AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1385570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385570 MtrunA17_Chr4g0037811 99.670 303 1 0 265 567 143 445 0.0 645
Msa1385570 MtrunA17_Chr4g0037811 99.296 142 1 0 1 142 1 142 9.10e-93 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1385570 AT3G19820.2 80.319 564 107 2 1 563 1 561 0.0 959
Msa1385570 AT3G19820.1 80.319 564 107 2 1 563 1 561 0.0 959
Msa1385570 AT3G19820.3 80.319 564 107 2 1 563 1 561 0.0 959

Find 215 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTGATCTTTCTGCTTTC+AGG 0.122233 tig0020757:+76879 Msa1385570:CDS
TAACTTCATGTACTCCTTAA+TGG 0.180078 tig0020757:-77245 None:intergenic
ATGCCTGTGCAATATCTTTC+AGG 0.192669 tig0020757:-77291 None:intergenic
GCATCTATAAAGTTCCTTTC+TGG 0.204155 tig0020757:-78978 None:intergenic
ATTGTCCTGGTCCCCATCTC+TGG 0.205729 tig0020757:-77332 None:intergenic
TATCTTATTCCCCTTCTTCT+TGG 0.210815 tig0020757:-77446 None:intergenic
GGTACCAACAACTGGTTTAT+AGG 0.242029 tig0020757:-77269 None:intergenic
TTGCTGATCAATGGTGGTTT+AGG 0.262363 tig0020757:+77620 Msa1385570:CDS
ACCCAAATCTTCTTCCTCTT+AGG 0.291716 tig0020757:-76584 None:intergenic
ACCGTTGGTGGCCTCATAAA+TGG 0.294869 tig0020757:+77031 Msa1385570:CDS
GATCAAGCTTATACCCATTA+AGG 0.299055 tig0020757:+77231 Msa1385570:CDS
TTCCTTCTGCCGCGTCTTGA+AGG 0.306504 tig0020757:-76717 None:intergenic
TGCAGCTCAAAGCCTGCTTC+CGG 0.316520 tig0020757:-78262 None:intergenic
GCCCTAAGAGGAAGAAGATT+TGG 0.321771 tig0020757:+76582 Msa1385570:CDS
AGCTTCACGCACCTCCTTCT+CGG 0.323950 tig0020757:-78578 None:intergenic
GGATGGATGGACACAGGTTT+AGG 0.339196 tig0020757:+78933 Msa1385570:three_prime_UTR
AAAATAAAGTGTGAAGGAAA+TGG 0.340562 tig0020757:-76657 None:intergenic
AACTTCATGTACTCCTTAAT+GGG 0.343574 tig0020757:-77244 None:intergenic
AACTGAATGAGAAAAGCTTC+TGG 0.349335 tig0020757:+78455 Msa1385570:CDS
CTTTCTGGCAAAGGATCGTT+TGG 0.351471 tig0020757:-78963 None:intergenic
ATAAATGGTTATGGGATAGA+AGG 0.354097 tig0020757:+77046 Msa1385570:CDS
TTAACCGTTTGAGACTGATA+TGG 0.358527 tig0020757:+78825 Msa1385570:three_prime_UTR
ATGCACCAGGTCCTGTGTTA+AGG 0.363892 tig0020757:+78341 Msa1385570:CDS
GGTGGCCTCATAAATGGTTA+TGG 0.368242 tig0020757:+77037 Msa1385570:CDS
CTGGTCTATATGAGCATTGT+AGG 0.368765 tig0020757:+78491 Msa1385570:CDS
CAGGCTTTGAGCTGCAACGC+AGG 0.375137 tig0020757:+78269 Msa1385570:CDS
TTACGCTATTCCGTGGTCTC+AGG 0.376933 tig0020757:+77180 Msa1385570:CDS
ACGGTTAAAATCACCATGTT+AGG 0.377799 tig0020757:-78810 None:intergenic
CCCTAAGAGGAAGAAGATTT+GGG 0.379452 tig0020757:+76583 Msa1385570:CDS
CCGTGGTCTCAGGGAACACT+TGG 0.380984 tig0020757:+77190 Msa1385570:CDS
GAGCATTGTAGGAGGAAGTA+TGG 0.383337 tig0020757:+78502 Msa1385570:CDS
GAAGGGAGTTCCCACAAATA+TGG 0.386755 tig0020757:+77064 Msa1385570:CDS
TGTGGCCTTCGAAATTGTTC+TGG 0.388234 tig0020757:+77105 Msa1385570:CDS
TTAAGGGGTGAGGTGTTTGA+TGG 0.390138 tig0020757:+78358 Msa1385570:CDS
TGAGAAATGTTGACTATAAG+AGG 0.392610 tig0020757:+76843 Msa1385570:CDS
TGCACCAGGTCCTGTGTTAA+GGG 0.394470 tig0020757:+78342 Msa1385570:CDS
CCCAAATCTTCTTCCTCTTA+GGG 0.403561 tig0020757:-76583 None:intergenic
CCTGGATAACATGCATTTCA+TGG 0.407151 tig0020757:-77720 None:intergenic
CAAGTTGCCAGTCAAAACTA+TGG 0.409506 tig0020757:+78234 Msa1385570:CDS
ACTTGCTGTGGTTGCTGAGC+TGG 0.410845 tig0020757:+77000 Msa1385570:CDS
GGCACACAAGATGTTTGTAT+TGG 0.410878 tig0020757:+77575 Msa1385570:CDS
CTTTGAGCTGCAACGCAGGC+AGG 0.413552 tig0020757:+78273 Msa1385570:CDS
ACAATGCATATCCCCATGTT+TGG 0.415530 tig0020757:+78912 Msa1385570:three_prime_UTR
TTGTAGTGATAGTGAGCTGC+TGG 0.418846 tig0020757:-75339 None:intergenic
TCAACATGGGGCAGATTACC+AGG 0.420055 tig0020757:+76954 Msa1385570:CDS
GCAGCTCAAAGCCTGCTTCC+GGG 0.423109 tig0020757:-78261 None:intergenic
CAAACGATCCTTTGCCAGAA+AGG 0.424662 tig0020757:+78964 Msa1385570:three_prime_UTR
TCCTCCCATTTGCTGATCAA+TGG 0.428047 tig0020757:+77611 Msa1385570:CDS
CTATCCCATAACCATTTATG+AGG 0.428256 tig0020757:-77042 None:intergenic
ACACGAGCTGTGTGCATGAC+AGG 0.431460 tig0020757:+77400 Msa1385570:CDS
GGTTTAGGTTTCTGTTTGGC+TGG 0.432107 tig0020757:+77635 Msa1385570:CDS
GCACACAAGATGTTTGTATT+GGG 0.432787 tig0020757:+77576 Msa1385570:CDS
AAGGAACTTTATAGATGCAT+TGG 0.433745 tig0020757:+78983 Msa1385570:three_prime_UTR
TCTTTCAGGGTACCAACAAC+TGG 0.438314 tig0020757:-77277 None:intergenic
CTGTGCGTAGATTGGAGAAC+TGG 0.442494 tig0020757:+78389 Msa1385570:CDS
AAATAAAGTGTGAAGGAAAT+GGG 0.442624 tig0020757:-76656 None:intergenic
CCATGAAATGCATGTTATCC+AGG 0.442794 tig0020757:+77720 Msa1385570:CDS
CTCTGCATGTTGGTAGAACC+AGG 0.442971 tig0020757:-77494 None:intergenic
TGCATATGCAGTTTCAAGGT+GGG 0.443614 tig0020757:-78608 None:intergenic
TTCGAAATTGTTCTGGCAGA+TGG 0.443717 tig0020757:+77112 Msa1385570:CDS
ACAGCAAGTGCAAGATTCAT+AGG 0.446972 tig0020757:-76986 None:intergenic
AACCACCATTGATCAGCAAA+TGG 0.447819 tig0020757:-77616 None:intergenic
GCCTTGAGCAGAGAAACCTT+GGG 0.447957 tig0020757:-77667 None:intergenic
ATCATAGTTTCAACGAAGTC+GGG 0.449537 tig0020757:-77367 None:intergenic
GCAGACAAGGCCATCCTTTG+AGG 0.452680 tig0020757:-76789 None:intergenic
GTGGCCTCATAAATGGTTAT+GGG 0.459653 tig0020757:+77038 Msa1385570:CDS
TGCCTTGAGCAGAGAAACCT+TGG 0.460485 tig0020757:-77668 None:intergenic
CGTAAGCCGTGGATCGCTGT+TGG 0.463167 tig0020757:+76818 Msa1385570:CDS
AGGAACTTTATAGATGCATT+GGG 0.465996 tig0020757:+78984 Msa1385570:three_prime_UTR
CTTCTGCATATGCAGTTTCA+AGG 0.467078 tig0020757:-78612 None:intergenic
CGGAAAAGAGGCCATATTTG+TGG 0.470653 tig0020757:-77075 None:intergenic
TTGTCCTGGTCCCCATCTCT+GGG 0.472488 tig0020757:-77331 None:intergenic
GTAAGCCGTGGATCGCTGTT+GGG 0.474322 tig0020757:+76819 Msa1385570:CDS
TTAACCTATAAACCAGTTGT+TGG 0.474861 tig0020757:+77265 Msa1385570:CDS
TGCAGATGCTGTGCGTAGAT+TGG 0.477605 tig0020757:+78381 Msa1385570:CDS
AGGTGGGAGATGCACTAGAA+TGG 0.479151 tig0020757:+77764 Msa1385570:CDS
TCTTCTTCCTCTTAGGGCGC+AGG 0.481487 tig0020757:-76577 None:intergenic
TTCTGGAGGATGTTTGATGC+TGG 0.485214 tig0020757:+78472 Msa1385570:CDS
AGAATTTCAAATCAGTCTGC+TGG 0.485554 tig0020757:-78643 None:intergenic
TGGTGGTTTAGGTTTCTGTT+TGG 0.486503 tig0020757:+77631 Msa1385570:CDS
TGAAATTCTGATTTATCTGA+TGG 0.491599 tig0020757:+78657 Msa1385570:three_prime_UTR
AGAATGGGTTGACCGTGAAA+TGG 0.491720 tig0020757:+77780 Msa1385570:CDS
TATCCCCATGTTTGGATGGA+TGG 0.491928 tig0020757:+78920 Msa1385570:three_prime_UTR
CCAAGTGTTCCCTGAGACCA+CGG 0.493362 tig0020757:-77190 None:intergenic
TGCTCCCAGAGATGGGGACC+AGG 0.494088 tig0020757:+77327 Msa1385570:CDS
ATAAAGTTCCTTTCTGGCAA+AGG 0.498865 tig0020757:-78972 None:intergenic
AGGCTCCCCTGCGCCCTAAG+AGG 0.499822 tig0020757:+76570 Msa1385570:CDS
AATCATAGTTTCAACGAAGT+CGG 0.503377 tig0020757:-77368 None:intergenic
GAAAGAAGAGGCCAAGAAGA+AGG 0.504062 tig0020757:+77435 Msa1385570:CDS
TGTGTACTACAAATCAAAGA+AGG 0.504519 tig0020757:+78546 Msa1385570:CDS
AGGTCCTGTGTTAAGGGGTG+AGG 0.504591 tig0020757:+78348 Msa1385570:CDS
GGTAGAGCCCCTTGTCAACA+TGG 0.505052 tig0020757:+76940 Msa1385570:CDS
TACGCTATTCCGTGGTCTCA+GGG 0.506036 tig0020757:+77181 Msa1385570:CDS
ACTATGGTTTACCCGGAAGC+AGG 0.507054 tig0020757:+78250 Msa1385570:CDS
GAACCTTCTCATCATTGTCC+TGG 0.510778 tig0020757:-77345 None:intergenic
GGAAAAGAGGCCATATTTGT+GGG 0.513523 tig0020757:-77074 None:intergenic
CTGGACGATCTTACCGTTGG+TGG 0.514224 tig0020757:+77019 Msa1385570:CDS
AGAGTACTCATTGTCCTTGG+TGG 0.515091 tig0020757:-77149 None:intergenic
CAGACAAGGCCATCCTTTGA+GGG 0.518053 tig0020757:-76788 None:intergenic
GGTGGGAGATGCACTAGAAT+GGG 0.518452 tig0020757:+77765 Msa1385570:CDS
AGGAGGAAGTATGGAGCTGT+TGG 0.519209 tig0020757:+78511 Msa1385570:CDS
TGCCTGTGCAATATCTTTCA+GGG 0.520680 tig0020757:-77290 None:intergenic
CTTCTTCCTCTTAGGGCGCA+GGG 0.523602 tig0020757:-76576 None:intergenic
ACAAAGAGAGAATGATTGCT+AGG 0.523767 tig0020757:+76918 Msa1385570:CDS
CTGAGCAATGTCGGATCTTG+AGG 0.524921 tig0020757:+76550 Msa1385570:exon
CCCCAAGGTTTCTCTGCTCA+AGG 0.527182 tig0020757:+77666 Msa1385570:CDS
ATCAGAGTACTCATTGTCCT+TGG 0.528456 tig0020757:-77152 None:intergenic
TCCCATTTGCTGATCAATGG+TGG 0.530260 tig0020757:+77614 Msa1385570:CDS
CATACTTGTTCCATTGTACA+AGG 0.532528 tig0020757:+77744 Msa1385570:CDS
CACAAGATGTTTGTATTGGG+AGG 0.533101 tig0020757:+77579 Msa1385570:CDS
TTTGAGCTGCAACGCAGGCA+GGG 0.534260 tig0020757:+78274 Msa1385570:CDS
ACCACCATTGATCAGCAAAT+GGG 0.535910 tig0020757:-77615 None:intergenic
AAAGAAGAGGCCAAGAAGAA+GGG 0.540838 tig0020757:+77436 Msa1385570:CDS
TTCGAAGGCCACAACAGTAT+CGG 0.540909 tig0020757:-77095 None:intergenic
TTTAACAACCTTCTCAACAT+TGG 0.541123 tig0020757:-76747 None:intergenic
GCATCTCCCACCTTGTACAA+TGG 0.541928 tig0020757:-77754 None:intergenic
TGCAGAGACAGCACTCAAGA+AGG 0.544521 tig0020757:+77510 Msa1385570:CDS
GTGCCTGTGATAATATTCTC+TGG 0.544851 tig0020757:-77557 None:intergenic
AAAAGTGTACCTCCATTTCA+CGG 0.546091 tig0020757:-77792 None:intergenic
GATGGACACAGGTTTAGGCT+TGG 0.546649 tig0020757:+78938 Msa1385570:three_prime_UTR
ACTACAAATCAAAGAAGGGC+AGG 0.551021 tig0020757:+78551 Msa1385570:CDS
TTAATTATGTGGACCTAACA+TGG 0.551481 tig0020757:+78797 Msa1385570:three_prime_UTR
CCACAACAGTATCGGAAAAG+AGG 0.551694 tig0020757:-77087 None:intergenic
TGTGTCCATCCATCCAAACA+TGG 0.551936 tig0020757:-78925 None:intergenic
GTCCTTCAAGACGCGGCAGA+AGG 0.553756 tig0020757:+76715 Msa1385570:CDS
GGAGGAAGTATGGAGCTGTT+GGG 0.553976 tig0020757:+78512 Msa1385570:CDS
TGCATATCCCCATGTTTGGA+TGG 0.555061 tig0020757:+78916 Msa1385570:three_prime_UTR
CTCATCCCAACAGCGATCCA+CGG 0.556306 tig0020757:-76824 None:intergenic
TAATCTGCCCCATGTTGACA+AGG 0.556764 tig0020757:-76949 None:intergenic
TGAGTGCTGTCTCTGCATGT+TGG 0.556997 tig0020757:-77504 None:intergenic
TAGGATGGTGGTACAAAACC+TGG 0.558047 tig0020757:+77476 Msa1385570:CDS
TCAGATCTTTAGCTTCAGAT+CGG 0.562889 tig0020757:+78733 Msa1385570:three_prime_UTR
TATGAATCTTGCACTTGCTG+TGG 0.564180 tig0020757:+76988 Msa1385570:CDS
ATAAGATAAACAGTGTAGGA+TGG 0.564845 tig0020757:+77461 Msa1385570:CDS
ACAATGGAACAAGTATGTCC+TGG 0.569876 tig0020757:-77738 None:intergenic
TGTAGTGATAGTGAGCTGCT+GGG 0.571174 tig0020757:-75338 None:intergenic
CTTGTTCCATTGTACAAGGT+GGG 0.572279 tig0020757:+77748 Msa1385570:CDS
GCTTACGAGCGGTGCAGACA+AGG 0.572892 tig0020757:-76802 None:intergenic
ATTTGTGTGGACAGAGCCAA+AGG 0.577401 tig0020757:-78207 None:intergenic
GGGCAGGAAAACCGAGAAGG+AGG 0.579702 tig0020757:+78567 Msa1385570:CDS
CAGAGGAATCCCTCAAAGGA+TGG 0.580415 tig0020757:+76779 Msa1385570:CDS
GGCAACTTGTACAATTTGTG+TGG 0.580853 tig0020757:-78220 None:intergenic
TAAATGGTTATGGGATAGAA+GGG 0.581513 tig0020757:+77047 Msa1385570:CDS
TCTGCACCGCTCGTAAGCCG+TGG 0.581740 tig0020757:+76807 Msa1385570:CDS
AATGGGTATAAGCTTGATCT+CGG 0.583090 tig0020757:-77227 None:intergenic
GGGAATAAGATAAACAGTGT+AGG 0.583093 tig0020757:+77457 Msa1385570:CDS
TTTGTAGTACACACTCATGA+AGG 0.583475 tig0020757:-78536 None:intergenic
GTAGAGCCCCTTGTCAACAT+GGG 0.583539 tig0020757:+76941 Msa1385570:CDS
ATGTTTGGATGGATGGACAC+AGG 0.586560 tig0020757:+78927 Msa1385570:three_prime_UTR
GTGTCCATCCATCCAAACAT+GGG 0.586901 tig0020757:-78924 None:intergenic
ACAAGATGTTTGTATTGGGA+GGG 0.589194 tig0020757:+77580 Msa1385570:CDS
TGTGAGAAAATAAAGTGTGA+AGG 0.590523 tig0020757:-76663 None:intergenic
GGACGGTTTAAGATGAGAGT+GGG 0.591903 tig0020757:+75243 Msa1385570:five_prime_UTR
CTGTGATAATATTCTCTGGT+GGG 0.593410 tig0020757:-77553 None:intergenic
CGTGGTCTCAGGGAACACTT+GGG 0.593768 tig0020757:+77191 Msa1385570:CDS
CTGCATATGCAGTTTCAAGG+TGG 0.595101 tig0020757:-78609 None:intergenic
CACGAGCTGTGTGCATGACA+GGG 0.595145 tig0020757:+77401 Msa1385570:CDS
TCTCTGCTCAAGGCAACTCA+AGG 0.597619 tig0020757:+77676 Msa1385570:CDS
GTCATGCACACAGCTCGTGT+TGG 0.600280 tig0020757:-77397 None:intergenic
GAGCTGGACGATCTTACCGT+TGG 0.600852 tig0020757:+77016 Msa1385570:CDS
TTTGTGTGGACAGAGCCAAA+GGG 0.601704 tig0020757:-78206 None:intergenic
ATAGCCATATCAGTCTCAAA+CGG 0.602404 tig0020757:-78829 None:intergenic
TTCTTCCTCTTAGGGCGCAG+GGG 0.604740 tig0020757:-76575 None:intergenic
CAAAGAGAGAATGATTGCTA+GGG 0.605431 tig0020757:+76919 Msa1385570:CDS
TCACCCCTTAACACAGGACC+TGG 0.606936 tig0020757:-78346 None:intergenic
ACCATTTATGAGGCCACCAA+CGG 0.607260 tig0020757:-77032 None:intergenic
GTCTATATGAGCATTGTAGG+AGG 0.608973 tig0020757:+78494 Msa1385570:CDS
ACTCTCTCTCGCTCTCACTC+AGG 0.609621 tig0020757:+75385 Msa1385570:five_prime_UTR
GAGGTATGCTTCGAAAGAAG+AGG 0.610183 tig0020757:+77423 Msa1385570:CDS
TTGTTAAACGTCTCAAACAG+AGG 0.610205 tig0020757:+76762 Msa1385570:CDS
GTAGTGATAGTGAGCTGCTG+GGG 0.610843 tig0020757:-75337 None:intergenic
CAAACAGAGGAATCCCTCAA+AGG 0.611223 tig0020757:+76775 Msa1385570:CDS
AAGAAGAGGCCAAGAAGAAG+GGG 0.611230 tig0020757:+77437 Msa1385570:CDS
CGGACGGTTTAAGATGAGAG+TGG 0.611836 tig0020757:+75242 Msa1385570:five_prime_UTR
GCAGAGACAGCACTCAAGAA+GGG 0.611871 tig0020757:+77511 Msa1385570:CDS
ACATAATTAATAAAAGACAC+TGG 0.611993 tig0020757:-78784 None:intergenic
TACCCTGAAAGATATTGCAC+AGG 0.613826 tig0020757:+77288 Msa1385570:CDS
ATTCATAGGCACAGTCACCC+TGG 0.614144 tig0020757:-76972 None:intergenic
ACACGATGCCAATGTTGAGA+AGG 0.614178 tig0020757:+76739 Msa1385570:CDS
AAGACAAAAGAAGGCACGGA+CGG 0.614873 tig0020757:+75226 Msa1385570:five_prime_UTR
ATCTGCCAGAACAATTTCGA+AGG 0.615777 tig0020757:-77110 None:intergenic
GAAGGGCAGGAAAACCGAGA+AGG 0.616478 tig0020757:+78564 Msa1385570:CDS
GTGTACTACAAATCAAAGAA+GGG 0.617792 tig0020757:+78547 Msa1385570:CDS
GCTCAAATGTTCACAGACGT+TGG 0.618493 tig0020757:+78310 Msa1385570:CDS
AATCTGCCCCATGTTGACAA+GGG 0.619059 tig0020757:-76948 None:intergenic
CCACCAGAGAATATTATCAC+AGG 0.620417 tig0020757:+77554 Msa1385570:CDS
GGACCAGGACAATGATGAGA+AGG 0.621081 tig0020757:+77342 Msa1385570:CDS
GAGAAATGTTGACTATAAGA+GGG 0.622561 tig0020757:+76844 Msa1385570:CDS
ATCTGCCCCATGTTGACAAG+GGG 0.624488 tig0020757:-76947 None:intergenic
GTTGGAGTTTACTATGCACC+AGG 0.625636 tig0020757:+78328 Msa1385570:CDS
GCACCAGGTCCTGTGTTAAG+GGG 0.625785 tig0020757:+78343 Msa1385570:CDS
TGAATGAGAAAAGCTTCTGG+AGG 0.626733 tig0020757:+78458 Msa1385570:CDS
AGTCAAAACTATGGTTTACC+CGG 0.628391 tig0020757:+78243 Msa1385570:CDS
CAATAAATTCAGAAACAACA+AGG 0.637374 tig0020757:-78694 None:intergenic
ACTTGTTCCATTGTACAAGG+TGG 0.646015 tig0020757:+77747 Msa1385570:CDS
CCTGTGATAATATTCTCTGG+TGG 0.646613 tig0020757:-77554 None:intergenic
TTCTCTTGTTAAAGCCACCA+AGG 0.648409 tig0020757:+77135 Msa1385570:CDS
ACCATTGATCAGCAAATGGG+AGG 0.651120 tig0020757:-77612 None:intergenic
AGCGATCCACGGCTTACGAG+CGG 0.651614 tig0020757:-76813 None:intergenic
ATGGGTTGACCGTGAAATGG+AGG 0.651686 tig0020757:+77783 Msa1385570:CDS
CCTTGAGCAGAGAAACCTTG+GGG 0.652575 tig0020757:-77666 None:intergenic
AACACCTCACCCCTTAACAC+AGG 0.657021 tig0020757:-78352 None:intergenic
AGATAAACAGTGTAGGATGG+TGG 0.658759 tig0020757:+77464 Msa1385570:CDS
TTGTGTGGACAGAGCCAAAG+GGG 0.665600 tig0020757:-78205 None:intergenic
TAGAGCCCCTTGTCAACATG+GGG 0.667503 tig0020757:+76942 Msa1385570:CDS
AGTTCAGACACAGCGTACTG+TGG 0.672226 tig0020757:-78436 None:intergenic
TGTCCATCCATCCAAACATG+GGG 0.683672 tig0020757:-78923 None:intergenic
CTTGAGCAGAGAAACCTTGG+GGG 0.692352 tig0020757:-77665 None:intergenic
CAACATGGGGCAGATTACCA+GGG 0.696657 tig0020757:+76955 Msa1385570:CDS
AGTGGAAGTCCTTCAAGACG+CGG 0.706174 tig0020757:+76708 Msa1385570:CDS
TTGAGCAGAGAAACCTTGGG+GGG 0.708905 tig0020757:-77664 None:intergenic
GAGCTGTGTGCATGACAGGG+AGG 0.732610 tig0020757:+77404 Msa1385570:CDS
TGTGTGGACAGAGCCAAAGG+GGG 0.739581 tig0020757:-78204 None:intergenic
ACTCAGATCTCACATCACCA+AGG 0.755020 tig0020757:-76688 None:intergenic
TTGGTGATGTGAGATCTGAG+TGG 0.784388 tig0020757:+76690 Msa1385570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAACTAAAACATTATTA+AGG - tig0020757:77829-77848 None:intergenic 15.0%
!! ATTGAAACTTAAACTTTAAA+TGG - tig0020757:77892-77911 None:intergenic 15.0%
!!! AATTTTTTTTTTGAGGTTTA+AGG - tig0020757:78881-78900 None:intergenic 15.0%
!! TTAAGTCCAAAATCATTTAT+AGG + tig0020757:76184-76203 Msa1385570:intron 20.0%
!!! CTAAAACCTATAAATGATTT+TGG - tig0020757:76193-76212 None:intergenic 20.0%
!!! GATTTAATTCACTTTTTGAT+TGG + tig0020757:76293-76312 Msa1385570:intron 20.0%
!! ACATAATTAATAAAAGACAC+TGG - tig0020757:78787-78806 None:intergenic 20.0%
!!! AGTGTCTTTTATTAATTATG+TGG + tig0020757:78786-78805 Msa1385570:three_prime_UTR 20.0%
!!! TAAGGCAAATTTTTTTTTTG+AGG - tig0020757:78888-78907 None:intergenic 20.0%
! AGAAATGAATGAATGAATGA+TGG - tig0020757:75520-75539 None:intergenic 25.0%
!! GTTTGATTCCATTGATTAAA+AGG + tig0020757:75601-75620 Msa1385570:intron 25.0%
!!! TTTGGGTTTTTCTCTTTTAT+CGG + tig0020757:75647-75666 Msa1385570:intron 25.0%
! TAAGTAAAGAAGCTAACTAA+GGG - tig0020757:75685-75704 None:intergenic 25.0%
! TTAAGTAAAGAAGCTAACTA+AGG - tig0020757:75686-75705 None:intergenic 25.0%
! TCTCTTTACAAGTTTAGTTA+AGG + tig0020757:75848-75867 Msa1385570:intron 25.0%
! CTCTTTACAAGTTTAGTTAA+GGG + tig0020757:75849-75868 Msa1385570:intron 25.0%
!! TTTTGGACTTAACCAAATTA+GGG - tig0020757:76176-76195 None:intergenic 25.0%
!! ATTTTGGACTTAACCAAATT+AGG - tig0020757:76177-76196 None:intergenic 25.0%
!!! TAACAGTTTTGTTTAAACCT+TGG - tig0020757:76348-76367 None:intergenic 25.0%
! AAGGTTTAAACAAAACTGTT+AGG + tig0020757:76347-76366 Msa1385570:intron 25.0%
!! TTTTATAATCTGAGCAATGT+CGG + tig0020757:76541-76560 Msa1385570:exon 25.0%
! AAATAAAGTGTGAAGGAAAT+GGG - tig0020757:76659-76678 None:intergenic 25.0%
! AAAATAAAGTGTGAAGGAAA+TGG - tig0020757:76660-76679 None:intergenic 25.0%
! AATCACAAGAAACTAAACTA+GGG + tig0020757:77909-77928 Msa1385570:intron 25.0%
! CTGTTAAGATCTATAGTAAT+TGG + tig0020757:77985-78004 Msa1385570:intron 25.0%
! TGAAATTCTGATTTATCTGA+TGG + tig0020757:78657-78676 Msa1385570:three_prime_UTR 25.0%
! CAATAAATTCAGAAACAACA+AGG - tig0020757:78697-78716 None:intergenic 25.0%
TGAATGAATGATGGTAAATG+TGG - tig0020757:75511-75530 None:intergenic 30.0%
! AGAATCTGCCTTTTAATCAA+TGG - tig0020757:75612-75631 None:intergenic 30.0%
! TCTCATAGTGTTGTTAGATT+TGG + tig0020757:75629-75648 Msa1385570:intron 30.0%
! CTCATAGTGTTGTTAGATTT+GGG + tig0020757:75630-75649 Msa1385570:intron 30.0%
TTTGGACTTAACCAAATTAG+GGG - tig0020757:76175-76194 None:intergenic 30.0%
! TTTTGAATCTTCTCATTCAC+TGG + tig0020757:76238-76257 Msa1385570:intron 30.0%
GAGTTAATTATTCACACTAG+TGG - tig0020757:76452-76471 None:intergenic 30.0%
CTGTAGTTGTGAAATTTCAA+AGG + tig0020757:76480-76499 Msa1385570:intron 30.0%
! ACTATTTTGTTCAGTTTCGA+TGG + tig0020757:76609-76628 Msa1385570:CDS 30.0%
!!! ATGGATCCTTGTTATTTTTG+TGG + tig0020757:76628-76647 Msa1385570:CDS 30.0%
GAAGAACCACAAAAATAACA+AGG - tig0020757:76637-76656 None:intergenic 30.0%
TGTGAGAAAATAAAGTGTGA+AGG - tig0020757:76666-76685 None:intergenic 30.0%
!!! CTTTATTTTCTCACATACCT+TGG + tig0020757:76671-76690 Msa1385570:CDS 30.0%
TTTAACAACCTTCTCAACAT+TGG - tig0020757:76750-76769 None:intergenic 30.0%
! TGAGAAATGTTGACTATAAG+AGG + tig0020757:76843-76862 Msa1385570:CDS 30.0%
! GAGAAATGTTGACTATAAGA+GGG + tig0020757:76844-76863 Msa1385570:CDS 30.0%
ATAAATGGTTATGGGATAGA+AGG + tig0020757:77046-77065 Msa1385570:CDS 30.0%
TAAATGGTTATGGGATAGAA+GGG + tig0020757:77047-77066 Msa1385570:CDS 30.0%
AACTTCATGTACTCCTTAAT+GGG - tig0020757:77247-77266 None:intergenic 30.0%
TAACTTCATGTACTCCTTAA+TGG - tig0020757:77248-77267 None:intergenic 30.0%
TTAACCTATAAACCAGTTGT+TGG + tig0020757:77265-77284 Msa1385570:CDS 30.0%
AATCATAGTTTCAACGAAGT+CGG - tig0020757:77371-77390 None:intergenic 30.0%
ATAAGATAAACAGTGTAGGA+TGG + tig0020757:77461-77480 Msa1385570:CDS 30.0%
!! TTTTTCAGACTGTTTCATTC+AGG + tig0020757:77853-77872 Msa1385570:intron 30.0%
! TTTTCAGACTGTTTCATTCA+GGG + tig0020757:77854-77873 Msa1385570:intron 30.0%
CAATCACAAGAAACTAAACT+AGG + tig0020757:77908-77927 Msa1385570:intron 30.0%
ATCACAAGAAACTAAACTAG+GGG + tig0020757:77910-77929 Msa1385570:intron 30.0%
TCTTAACAGACAAAGGAAAT+GGG - tig0020757:77974-77993 None:intergenic 30.0%
ATCTTAACAGACAAAGGAAA+TGG - tig0020757:77975-77994 None:intergenic 30.0%
CTATAGATCTTAACAGACAA+AGG - tig0020757:77981-78000 None:intergenic 30.0%
TGTGTACTACAAATCAAAGA+AGG + tig0020757:78546-78565 Msa1385570:CDS 30.0%
GTGTACTACAAATCAAAGAA+GGG + tig0020757:78547-78566 Msa1385570:CDS 30.0%
TTAATTATGTGGACCTAACA+TGG + tig0020757:78797-78816 Msa1385570:three_prime_UTR 30.0%
!!! TTTTTTTGAGGTTTAAGGCA+AGG - tig0020757:78876-78895 None:intergenic 30.0%
! GGGATATGCATTGTATTTTA+AGG - tig0020757:78906-78925 None:intergenic 30.0%
AAGGAACTTTATAGATGCAT+TGG + tig0020757:78983-79002 Msa1385570:three_prime_UTR 30.0%
AGGAACTTTATAGATGCATT+GGG + tig0020757:78984-79003 Msa1385570:three_prime_UTR 30.0%
GAAAAAGACAAAAGAAGGCA+CGG + tig0020757:75222-75241 Msa1385570:five_prime_UTR 35.0%
TTCAAATTCAAAACACGCAC+AGG - tig0020757:75440-75459 None:intergenic 35.0%
CAAACTACATGCAGAAATTG+TGG - tig0020757:75586-75605 None:intergenic 35.0%
AAAGAAGCTAACTAAGGGTA+GGG - tig0020757:75680-75699 None:intergenic 35.0%
TAAAGAAGCTAACTAAGGGT+AGG - tig0020757:75681-75700 None:intergenic 35.0%
ATAACAAACTGCCCCTAATT+TGG + tig0020757:76161-76180 Msa1385570:intron 35.0%
TTGTTAAACGTCTCAAACAG+AGG + tig0020757:76762-76781 Msa1385570:CDS 35.0%
! AAGTTGATCTTTCTGCTTTC+AGG + tig0020757:76879-76898 Msa1385570:CDS 35.0%
ACAAAGAGAGAATGATTGCT+AGG + tig0020757:76918-76937 Msa1385570:CDS 35.0%
CAAAGAGAGAATGATTGCTA+GGG + tig0020757:76919-76938 Msa1385570:CDS 35.0%
CTATCCCATAACCATTTATG+AGG - tig0020757:77045-77064 None:intergenic 35.0%
! ATCTATTTTACGCTATTCCG+TGG + tig0020757:77173-77192 Msa1385570:CDS 35.0%
AATGGGTATAAGCTTGATCT+CGG - tig0020757:77230-77249 None:intergenic 35.0%
GATCAAGCTTATACCCATTA+AGG + tig0020757:77231-77250 Msa1385570:CDS 35.0%
ATCATAGTTTCAACGAAGTC+GGG - tig0020757:77370-77389 None:intergenic 35.0%
TATCTTATTCCCCTTCTTCT+TGG - tig0020757:77449-77468 None:intergenic 35.0%
GGGAATAAGATAAACAGTGT+AGG + tig0020757:77457-77476 Msa1385570:CDS 35.0%
CTGTGATAATATTCTCTGGT+GGG - tig0020757:77556-77575 None:intergenic 35.0%
GCACACAAGATGTTTGTATT+GGG + tig0020757:77576-77595 Msa1385570:CDS 35.0%
ACAAGATGTTTGTATTGGGA+GGG + tig0020757:77580-77599 Msa1385570:CDS 35.0%
CATACTTGTTCCATTGTACA+AGG + tig0020757:77744-77763 Msa1385570:CDS 35.0%
! AAAAGTGTACCTCCATTTCA+CGG - tig0020757:77795-77814 None:intergenic 35.0%
GAAGAAGCAGTAAACTTCAA+AGG - tig0020757:78030-78049 None:intergenic 35.0%
TCAATTCAAGCTGATATGTC+AGG + tig0020757:78106-78125 Msa1385570:intron 35.0%
AGTCAAAACTATGGTTTACC+CGG + tig0020757:78243-78262 Msa1385570:CDS 35.0%
AACTGAATGAGAAAAGCTTC+TGG + tig0020757:78455-78474 Msa1385570:CDS 35.0%
TTTGTAGTACACACTCATGA+AGG - tig0020757:78539-78558 None:intergenic 35.0%
AGAATTTCAAATCAGTCTGC+TGG - tig0020757:78646-78665 None:intergenic 35.0%
! TCAGATCTTTAGCTTCAGAT+CGG + tig0020757:78733-78752 Msa1385570:three_prime_UTR 35.0%
CAAAAACAGTATCAGCAACT+AGG - tig0020757:78759-78778 None:intergenic 35.0%
ACGGTTAAAATCACCATGTT+AGG - tig0020757:78813-78832 None:intergenic 35.0%
! TTAACCGTTTGAGACTGATA+TGG + tig0020757:78825-78844 Msa1385570:three_prime_UTR 35.0%
ATAGCCATATCAGTCTCAAA+CGG - tig0020757:78832-78851 None:intergenic 35.0%
! ATAAAGTTCCTTTCTGGCAA+AGG - tig0020757:78975-78994 None:intergenic 35.0%
GCATCTATAAAGTTCCTTTC+TGG - tig0020757:78981-79000 None:intergenic 35.0%
! AGAAGTGTGTTGTATAGCCA+AGG + tig0020757:76328-76347 Msa1385570:intron 40.0%
CCCAAATCTTCTTCCTCTTA+GGG - tig0020757:76586-76605 None:intergenic 40.0%
CCCTAAGAGGAAGAAGATTT+GGG + tig0020757:76583-76602 Msa1385570:CDS 40.0%
ACCCAAATCTTCTTCCTCTT+AGG - tig0020757:76587-76606 None:intergenic 40.0%
ACAGCAAGTGCAAGATTCAT+AGG - tig0020757:76989-77008 None:intergenic 40.0%
! TATGAATCTTGCACTTGCTG+TGG + tig0020757:76988-77007 Msa1385570:CDS 40.0%
GTGGCCTCATAAATGGTTAT+GGG + tig0020757:77038-77057 Msa1385570:CDS 40.0%
GGAAAAGAGGCCATATTTGT+GGG - tig0020757:77077-77096 None:intergenic 40.0%
ATCTGCCAGAACAATTTCGA+AGG - tig0020757:77113-77132 None:intergenic 40.0%
TTCGAAATTGTTCTGGCAGA+TGG + tig0020757:77112-77131 Msa1385570:CDS 40.0%
TTCTCTTGTTAAAGCCACCA+AGG + tig0020757:77135-77154 Msa1385570:CDS 40.0%
! ATCAGAGTACTCATTGTCCT+TGG - tig0020757:77155-77174 None:intergenic 40.0%
! GGTACCAACAACTGGTTTAT+AGG - tig0020757:77272-77291 None:intergenic 40.0%
TACCCTGAAAGATATTGCAC+AGG + tig0020757:77288-77307 Msa1385570:CDS 40.0%
TGCCTGTGCAATATCTTTCA+GGG - tig0020757:77293-77312 None:intergenic 40.0%
ATGCCTGTGCAATATCTTTC+AGG - tig0020757:77294-77313 None:intergenic 40.0%
! ATTCTTTTGCTCCCAGAGAT+GGG + tig0020757:77320-77339 Msa1385570:CDS 40.0%
AAAGAAGAGGCCAAGAAGAA+GGG + tig0020757:77436-77455 Msa1385570:CDS 40.0%
AGATAAACAGTGTAGGATGG+TGG + tig0020757:77464-77483 Msa1385570:CDS 40.0%
CCTGTGATAATATTCTCTGG+TGG - tig0020757:77557-77576 None:intergenic 40.0%
CCACCAGAGAATATTATCAC+AGG + tig0020757:77554-77573 Msa1385570:CDS 40.0%
GTGCCTGTGATAATATTCTC+TGG - tig0020757:77560-77579 None:intergenic 40.0%
GGCACACAAGATGTTTGTAT+TGG + tig0020757:77575-77594 Msa1385570:CDS 40.0%
CACAAGATGTTTGTATTGGG+AGG + tig0020757:77579-77598 Msa1385570:CDS 40.0%
ACCACCATTGATCAGCAAAT+GGG - tig0020757:77618-77637 None:intergenic 40.0%
AACCACCATTGATCAGCAAA+TGG - tig0020757:77619-77638 None:intergenic 40.0%
TTGCTGATCAATGGTGGTTT+AGG + tig0020757:77620-77639 Msa1385570:CDS 40.0%
! TGGTGGTTTAGGTTTCTGTT+TGG + tig0020757:77631-77650 Msa1385570:CDS 40.0%
CCTGGATAACATGCATTTCA+TGG - tig0020757:77723-77742 None:intergenic 40.0%
CCATGAAATGCATGTTATCC+AGG + tig0020757:77720-77739 Msa1385570:CDS 40.0%
ACAATGGAACAAGTATGTCC+TGG - tig0020757:77741-77760 None:intergenic 40.0%
ACTTGTTCCATTGTACAAGG+TGG + tig0020757:77747-77766 Msa1385570:CDS 40.0%
CTTGTTCCATTGTACAAGGT+GGG + tig0020757:77748-77767 Msa1385570:CDS 40.0%
GGCAACTTGTACAATTTGTG+TGG - tig0020757:78223-78242 None:intergenic 40.0%
CAAGTTGCCAGTCAAAACTA+TGG + tig0020757:78234-78253 Msa1385570:CDS 40.0%
!!! GGGTAAACCATAGTTTTGAC+TGG - tig0020757:78244-78263 None:intergenic 40.0%
TGAATGAGAAAAGCTTCTGG+AGG + tig0020757:78458-78477 Msa1385570:CDS 40.0%
! CTGGTCTATATGAGCATTGT+AGG + tig0020757:78491-78510 Msa1385570:CDS 40.0%
! GTCTATATGAGCATTGTAGG+AGG + tig0020757:78494-78513 Msa1385570:CDS 40.0%
ACTACAAATCAAAGAAGGGC+AGG + tig0020757:78551-78570 Msa1385570:CDS 40.0%
TGCATATGCAGTTTCAAGGT+GGG - tig0020757:78611-78630 None:intergenic 40.0%
CTTCTGCATATGCAGTTTCA+AGG - tig0020757:78615-78634 None:intergenic 40.0%
ACAATGCATATCCCCATGTT+TGG + tig0020757:78912-78931 Msa1385570:three_prime_UTR 40.0%
! AAGACAAAAGAAGGCACGGA+CGG + tig0020757:75226-75245 Msa1385570:five_prime_UTR 45.0%
! GGACGGTTTAAGATGAGAGT+GGG + tig0020757:75243-75262 Msa1385570:five_prime_UTR 45.0%
! TGTAGTGATAGTGAGCTGCT+GGG - tig0020757:75341-75360 None:intergenic 45.0%
! TTGTAGTGATAGTGAGCTGC+TGG - tig0020757:75342-75361 None:intergenic 45.0%
CAGAATCGAGAAGATCGAGA+CGG - tig0020757:75485-75504 None:intergenic 45.0%
GCCCTAAGAGGAAGAAGATT+TGG + tig0020757:76582-76601 Msa1385570:CDS 45.0%
ACTCAGATCTCACATCACCA+AGG - tig0020757:76691-76710 None:intergenic 45.0%
!! TTGGTGATGTGAGATCTGAG+TGG + tig0020757:76690-76709 Msa1385570:CDS 45.0%
ACACGATGCCAATGTTGAGA+AGG + tig0020757:76739-76758 Msa1385570:CDS 45.0%
CAAACAGAGGAATCCCTCAA+AGG + tig0020757:76775-76794 Msa1385570:CDS 45.0%
AATCTGCCCCATGTTGACAA+GGG - tig0020757:76951-76970 None:intergenic 45.0%
TAATCTGCCCCATGTTGACA+AGG - tig0020757:76952-76971 None:intergenic 45.0%
ACCATTTATGAGGCCACCAA+CGG - tig0020757:77035-77054 None:intergenic 45.0%
GGTGGCCTCATAAATGGTTA+TGG + tig0020757:77037-77056 Msa1385570:CDS 45.0%
GAAGGGAGTTCCCACAAATA+TGG + tig0020757:77064-77083 Msa1385570:CDS 45.0%
CGGAAAAGAGGCCATATTTG+TGG - tig0020757:77078-77097 None:intergenic 45.0%
! CCACAACAGTATCGGAAAAG+AGG - tig0020757:77090-77109 None:intergenic 45.0%
! CCTCTTTTCCGATACTGTTG+TGG + tig0020757:77087-77106 Msa1385570:CDS 45.0%
TTCGAAGGCCACAACAGTAT+CGG - tig0020757:77098-77117 None:intergenic 45.0%
TGTGGCCTTCGAAATTGTTC+TGG + tig0020757:77105-77124 Msa1385570:CDS 45.0%
! AGAGTACTCATTGTCCTTGG+TGG - tig0020757:77152-77171 None:intergenic 45.0%
! TCTTTCAGGGTACCAACAAC+TGG - tig0020757:77280-77299 None:intergenic 45.0%
! GATTCTTTTGCTCCCAGAGA+TGG + tig0020757:77319-77338 Msa1385570:CDS 45.0%
! TTCTTTTGCTCCCAGAGATG+GGG + tig0020757:77321-77340 Msa1385570:CDS 45.0%
GAACCTTCTCATCATTGTCC+TGG - tig0020757:77348-77367 None:intergenic 45.0%
GAGGTATGCTTCGAAAGAAG+AGG + tig0020757:77423-77442 Msa1385570:CDS 45.0%
GAAAGAAGAGGCCAAGAAGA+AGG + tig0020757:77435-77454 Msa1385570:CDS 45.0%
AAGAAGAGGCCAAGAAGAAG+GGG + tig0020757:77437-77456 Msa1385570:CDS 45.0%
! TAGGATGGTGGTACAAAACC+TGG + tig0020757:77476-77495 Msa1385570:CDS 45.0%
! TCCTCCCATTTGCTGATCAA+TGG + tig0020757:77611-77630 Msa1385570:CDS 45.0%
ACCATTGATCAGCAAATGGG+AGG - tig0020757:77615-77634 None:intergenic 45.0%
! TCCCATTTGCTGATCAATGG+TGG + tig0020757:77614-77633 Msa1385570:CDS 45.0%
! GGTTTAGGTTTCTGTTTGGC+TGG + tig0020757:77635-77654 Msa1385570:CDS 45.0%
!! AGAATGGGTTGACCGTGAAA+TGG + tig0020757:77780-77799 Msa1385570:CDS 45.0%
AGACTGTTTCATTCAGGGTG+AGG + tig0020757:77859-77878 Msa1385570:intron 45.0%
CATAACAGATCTACCCCCTT+TGG + tig0020757:78191-78210 Msa1385570:intron 45.0%
TTTGTGTGGACAGAGCCAAA+GGG - tig0020757:78209-78228 None:intergenic 45.0%
ATTTGTGTGGACAGAGCCAA+AGG - tig0020757:78210-78229 None:intergenic 45.0%
GCTCAAATGTTCACAGACGT+TGG + tig0020757:78310-78329 Msa1385570:CDS 45.0%
GTTGGAGTTTACTATGCACC+AGG + tig0020757:78328-78347 Msa1385570:CDS 45.0%
! TTAAGGGGTGAGGTGTTTGA+TGG + tig0020757:78358-78377 Msa1385570:CDS 45.0%
! TTCTGGAGGATGTTTGATGC+TGG + tig0020757:78472-78491 Msa1385570:CDS 45.0%
! GAGCATTGTAGGAGGAAGTA+TGG + tig0020757:78502-78521 Msa1385570:CDS 45.0%
CTGCATATGCAGTTTCAAGG+TGG - tig0020757:78612-78631 None:intergenic 45.0%
TGCATATCCCCATGTTTGGA+TGG + tig0020757:78916-78935 Msa1385570:three_prime_UTR 45.0%
TATCCCCATGTTTGGATGGA+TGG + tig0020757:78920-78939 Msa1385570:three_prime_UTR 45.0%
TGTCCATCCATCCAAACATG+GGG - tig0020757:78926-78945 None:intergenic 45.0%
GTGTCCATCCATCCAAACAT+GGG - tig0020757:78927-78946 None:intergenic 45.0%
TGTGTCCATCCATCCAAACA+TGG - tig0020757:78928-78947 None:intergenic 45.0%
ATGTTTGGATGGATGGACAC+AGG + tig0020757:78927-78946 Msa1385570:three_prime_UTR 45.0%
! CTTTCTGGCAAAGGATCGTT+TGG - tig0020757:78966-78985 None:intergenic 45.0%
CAAACGATCCTTTGCCAGAA+AGG + tig0020757:78964-78983 Msa1385570:three_prime_UTR 45.0%
! CGGACGGTTTAAGATGAGAG+TGG + tig0020757:75242-75261 Msa1385570:five_prime_UTR 50.0%
! GTAGTGATAGTGAGCTGCTG+GGG - tig0020757:75340-75359 None:intergenic 50.0%
CTGAGCAATGTCGGATCTTG+AGG + tig0020757:76550-76569 Msa1385570:exon 50.0%
AGTGGAAGTCCTTCAAGACG+CGG + tig0020757:76708-76727 Msa1385570:CDS 50.0%
CAGAGGAATCCCTCAAAGGA+TGG + tig0020757:76779-76798 Msa1385570:CDS 50.0%
CAGACAAGGCCATCCTTTGA+GGG - tig0020757:76791-76810 None:intergenic 50.0%
GTAGAGCCCCTTGTCAACAT+GGG + tig0020757:76941-76960 Msa1385570:CDS 50.0%
TAGAGCCCCTTGTCAACATG+GGG + tig0020757:76942-76961 Msa1385570:CDS 50.0%
ATCTGCCCCATGTTGACAAG+GGG - tig0020757:76950-76969 None:intergenic 50.0%
TCAACATGGGGCAGATTACC+AGG + tig0020757:76954-76973 Msa1385570:CDS 50.0%
CAACATGGGGCAGATTACCA+GGG + tig0020757:76955-76974 Msa1385570:CDS 50.0%
ATTCATAGGCACAGTCACCC+TGG - tig0020757:76975-76994 None:intergenic 50.0%
!! ACCGTTGGTGGCCTCATAAA+TGG + tig0020757:77031-77050 Msa1385570:CDS 50.0%
TTACGCTATTCCGTGGTCTC+AGG + tig0020757:77180-77199 Msa1385570:CDS 50.0%
TACGCTATTCCGTGGTCTCA+GGG + tig0020757:77181-77200 Msa1385570:CDS 50.0%
GGACCAGGACAATGATGAGA+AGG + tig0020757:77342-77361 Msa1385570:CDS 50.0%
! CTCTGCATGTTGGTAGAACC+AGG - tig0020757:77497-77516 None:intergenic 50.0%
! TGAGTGCTGTCTCTGCATGT+TGG - tig0020757:77507-77526 None:intergenic 50.0%
TGCAGAGACAGCACTCAAGA+AGG + tig0020757:77510-77529 Msa1385570:CDS 50.0%
GCAGAGACAGCACTCAAGAA+GGG + tig0020757:77511-77530 Msa1385570:CDS 50.0%
TTGAGCAGAGAAACCTTGGG+GGG - tig0020757:77667-77686 None:intergenic 50.0%
CTTGAGCAGAGAAACCTTGG+GGG - tig0020757:77668-77687 None:intergenic 50.0%
CCTTGAGCAGAGAAACCTTG+GGG - tig0020757:77669-77688 None:intergenic 50.0%
GCCTTGAGCAGAGAAACCTT+GGG - tig0020757:77670-77689 None:intergenic 50.0%
TGCCTTGAGCAGAGAAACCT+TGG - tig0020757:77671-77690 None:intergenic 50.0%
TCTCTGCTCAAGGCAACTCA+AGG + tig0020757:77676-77695 Msa1385570:CDS 50.0%
GCATCTCCCACCTTGTACAA+TGG - tig0020757:77757-77776 None:intergenic 50.0%
AGGTGGGAGATGCACTAGAA+TGG + tig0020757:77764-77783 Msa1385570:CDS 50.0%
GGTGGGAGATGCACTAGAAT+GGG + tig0020757:77765-77784 Msa1385570:CDS 50.0%
! ATGGGTTGACCGTGAAATGG+AGG + tig0020757:77783-77802 Msa1385570:CDS 50.0%
CTGTTTCATTCAGGGTGAGG+TGG + tig0020757:77862-77881 Msa1385570:intron 50.0%
TTGTGTGGACAGAGCCAAAG+GGG - tig0020757:78208-78227 None:intergenic 50.0%
ACTATGGTTTACCCGGAAGC+AGG + tig0020757:78250-78269 Msa1385570:CDS 50.0%
ATGCACCAGGTCCTGTGTTA+AGG + tig0020757:78341-78360 Msa1385570:CDS 50.0%
TGCACCAGGTCCTGTGTTAA+GGG + tig0020757:78342-78361 Msa1385570:CDS 50.0%
AACACCTCACCCCTTAACAC+AGG - tig0020757:78355-78374 None:intergenic 50.0%
TGCAGATGCTGTGCGTAGAT+TGG + tig0020757:78381-78400 Msa1385570:CDS 50.0%
CTGTGCGTAGATTGGAGAAC+TGG + tig0020757:78389-78408 Msa1385570:CDS 50.0%
AGTTCAGACACAGCGTACTG+TGG - tig0020757:78439-78458 None:intergenic 50.0%
! AGGAGGAAGTATGGAGCTGT+TGG + tig0020757:78511-78530 Msa1385570:CDS 50.0%
! GGAGGAAGTATGGAGCTGTT+GGG + tig0020757:78512-78531 Msa1385570:CDS 50.0%
GGATGGATGGACACAGGTTT+AGG + tig0020757:78933-78952 Msa1385570:three_prime_UTR 50.0%
GATGGACACAGGTTTAGGCT+TGG + tig0020757:78938-78957 Msa1385570:three_prime_UTR 50.0%
ACTCTCTCTCGCTCTCACTC+AGG + tig0020757:75385-75404 Msa1385570:five_prime_UTR 55.0%
TTCTTCCTCTTAGGGCGCAG+GGG - tig0020757:76578-76597 None:intergenic 55.0%
CTTCTTCCTCTTAGGGCGCA+GGG - tig0020757:76579-76598 None:intergenic 55.0%
TCTTCTTCCTCTTAGGGCGC+AGG - tig0020757:76580-76599 None:intergenic 55.0%
TTCCTTCTGCCGCGTCTTGA+AGG - tig0020757:76720-76739 None:intergenic 55.0%
GCAGACAAGGCCATCCTTTG+AGG - tig0020757:76792-76811 None:intergenic 55.0%
GTAAGCCGTGGATCGCTGTT+GGG + tig0020757:76819-76838 Msa1385570:CDS 55.0%
CTCATCCCAACAGCGATCCA+CGG - tig0020757:76827-76846 None:intergenic 55.0%
GGTAGAGCCCCTTGTCAACA+TGG + tig0020757:76940-76959 Msa1385570:CDS 55.0%
!! ACTTGCTGTGGTTGCTGAGC+TGG + tig0020757:77000-77019 Msa1385570:CDS 55.0%
GAGCTGGACGATCTTACCGT+TGG + tig0020757:77016-77035 Msa1385570:CDS 55.0%
CTGGACGATCTTACCGTTGG+TGG + tig0020757:77019-77038 Msa1385570:CDS 55.0%
CCAAGTGTTCCCTGAGACCA+CGG - tig0020757:77193-77212 None:intergenic 55.0%
CGTGGTCTCAGGGAACACTT+GGG + tig0020757:77191-77210 Msa1385570:CDS 55.0%
TTGTCCTGGTCCCCATCTCT+GGG - tig0020757:77334-77353 None:intergenic 55.0%
ATTGTCCTGGTCCCCATCTC+TGG - tig0020757:77335-77354 None:intergenic 55.0%
GTCATGCACACAGCTCGTGT+TGG - tig0020757:77400-77419 None:intergenic 55.0%
ACACGAGCTGTGTGCATGAC+AGG + tig0020757:77400-77419 Msa1385570:CDS 55.0%
CACGAGCTGTGTGCATGACA+GGG + tig0020757:77401-77420 Msa1385570:CDS 55.0%
CCCCAAGGTTTCTCTGCTCA+AGG + tig0020757:77666-77685 Msa1385570:CDS 55.0%
CTAGGGGCTGAGCTTTCATG+TGG + tig0020757:77926-77945 Msa1385570:intron 55.0%
TGTGTGGACAGAGCCAAAGG+GGG - tig0020757:78207-78226 None:intergenic 55.0%
TGCAGCTCAAAGCCTGCTTC+CGG - tig0020757:78265-78284 None:intergenic 55.0%
TTTGAGCTGCAACGCAGGCA+GGG + tig0020757:78274-78293 Msa1385570:CDS 55.0%
GCACCAGGTCCTGTGTTAAG+GGG + tig0020757:78343-78362 Msa1385570:CDS 55.0%
TCACCCCTTAACACAGGACC+TGG - tig0020757:78349-78368 None:intergenic 55.0%
AGGTCCTGTGTTAAGGGGTG+AGG + tig0020757:78348-78367 Msa1385570:CDS 55.0%
GAAGGGCAGGAAAACCGAGA+AGG + tig0020757:78564-78583 Msa1385570:CDS 55.0%
AGCTTCACGCACCTCCTTCT+CGG - tig0020757:78581-78600 None:intergenic 55.0%
GTCCTTCAAGACGCGGCAGA+AGG + tig0020757:76715-76734 Msa1385570:CDS 60.0%
GCTTACGAGCGGTGCAGACA+AGG - tig0020757:76805-76824 None:intergenic 60.0%
AGCGATCCACGGCTTACGAG+CGG - tig0020757:76816-76835 None:intergenic 60.0%
CGTAAGCCGTGGATCGCTGT+TGG + tig0020757:76818-76837 Msa1385570:CDS 60.0%
CCGTGGTCTCAGGGAACACT+TGG + tig0020757:77190-77209 Msa1385570:CDS 60.0%
GAGCTGTGTGCATGACAGGG+AGG + tig0020757:77404-77423 Msa1385570:CDS 60.0%
GCAGCTCAAAGCCTGCTTCC+GGG - tig0020757:78264-78283 None:intergenic 60.0%
!! CAGGCTTTGAGCTGCAACGC+AGG + tig0020757:78269-78288 Msa1385570:CDS 60.0%
CTTTGAGCTGCAACGCAGGC+AGG + tig0020757:78273-78292 Msa1385570:CDS 60.0%
GGGCAGGAAAACCGAGAAGG+AGG + tig0020757:78567-78586 Msa1385570:CDS 60.0%
TCTGCACCGCTCGTAAGCCG+TGG + tig0020757:76807-76826 Msa1385570:CDS 65.0%
TGCTCCCAGAGATGGGGACC+AGG + tig0020757:77327-77346 Msa1385570:CDS 65.0%
! TGGCTGGTTGATGCCCCCCA+AGG + tig0020757:77651-77670 Msa1385570:CDS 65.0%
AGGCTCCCCTGCGCCCTAAG+AGG + tig0020757:76570-76589 Msa1385570:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0020757 gene 75222 79020 75222 ID=Msa1385570;Name=Msa1385570
tig0020757 mRNA 75222 79020 75222 ID=Msa1385570-mRNA-1;Parent=Msa1385570;Name=Msa1385570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=212|1|1|1|0.5|0.33|3|366|567
tig0020757 exon 75222 75406 75222 ID=Msa1385570-mRNA-1:exon:9582;Parent=Msa1385570-mRNA-1
tig0020757 exon 76530 77804 76530 ID=Msa1385570-mRNA-1:exon:9583;Parent=Msa1385570-mRNA-1
tig0020757 exon 78199 79020 78199 ID=Msa1385570-mRNA-1:exon:9584;Parent=Msa1385570-mRNA-1
tig0020757 five_prime_UTR 75222 75406 75222 ID=Msa1385570-mRNA-1:five_prime_utr;Parent=Msa1385570-mRNA-1
tig0020757 five_prime_UTR 76530 76556 76530 ID=Msa1385570-mRNA-1:five_prime_utr;Parent=Msa1385570-mRNA-1
tig0020757 CDS 76557 77804 76557 ID=Msa1385570-mRNA-1:cds;Parent=Msa1385570-mRNA-1
tig0020757 CDS 78199 78654 78199 ID=Msa1385570-mRNA-1:cds;Parent=Msa1385570-mRNA-1
tig0020757 three_prime_UTR 78655 79020 78655 ID=Msa1385570-mRNA-1:three_prime_utr;Parent=Msa1385570-mRNA-1
Gene Sequence

>Msa1385570

ATGTCGGATCTTGAGGCTCCCCTGCGCCCTAAGAGGAAGAAGATTTGGGTTGACTATTTTGTTCAGTTTCGATGGATCCTTGTTATTTTTGTGGTTCTTCCCATTTCCTTCACACTTTATTTTCTCACATACCTTGGTGATGTGAGATCTGAGTGGAAGTCCTTCAAGACGCGGCAGAAGGAACACGATGCCAATGTTGAGAAGGTTGTTAAACGTCTCAAACAGAGGAATCCCTCAAAGGATGGCCTTGTCTGCACCGCTCGTAAGCCGTGGATCGCTGTTGGGATGAGAAATGTTGACTATAAGAGGGCTCGTCATTTTGAAGTTGATCTTTCTGCTTTCAGGAACGTTCTCAATATCGACAAAGAGAGAATGATTGCTAGGGTAGAGCCCCTTGTCAACATGGGGCAGATTACCAGGGTGACTGTGCCTATGAATCTTGCACTTGCTGTGGTTGCTGAGCTGGACGATCTTACCGTTGGTGGCCTCATAAATGGTTATGGGATAGAAGGGAGTTCCCACAAATATGGCCTCTTTTCCGATACTGTTGTGGCCTTCGAAATTGTTCTGGCAGATGGTTCTCTTGTTAAAGCCACCAAGGACAATGAGTACTCTGATCTATTTTACGCTATTCCGTGGTCTCAGGGAACACTTGGGCTTCTTGTTGCTGCCGAGATCAAGCTTATACCCATTAAGGAGTACATGAAGTTAACCTATAAACCAGTTGTTGGTACCCTGAAAGATATTGCACAGGCATATGCTGATTCTTTTGCTCCCAGAGATGGGGACCAGGACAATGATGAGAAGGTTCCCGACTTCGTTGAAACTATGATTTATTCGCCAACACGAGCTGTGTGCATGACAGGGAGGTATGCTTCGAAAGAAGAGGCCAAGAAGAAGGGGAATAAGATAAACAGTGTAGGATGGTGGTACAAAACCTGGTTCTACCAACATGCAGAGACAGCACTCAAGAAGGGACTGTTTGTAGAATACATTCCCACCAGAGAATATTATCACAGGCACACAAGATGTTTGTATTGGGAGGGAAAGCTTATCCTCCCATTTGCTGATCAATGGTGGTTTAGGTTTCTGTTTGGCTGGTTGATGCCCCCCAAGGTTTCTCTGCTCAAGGCAACTCAAGGTGAAGCTATTAGAAACTATTACCATGAAATGCATGTTATCCAGGACATACTTGTTCCATTGTACAAGGTGGGAGATGCACTAGAATGGGTTGACCGTGAAATGGAGATCTACCCCCTTTGGCTCTGTCCACACAAATTGTACAAGTTGCCAGTCAAAACTATGGTTTACCCGGAAGCAGGCTTTGAGCTGCAACGCAGGCAGGGAGACACACAAGATGCTCAAATGTTCACAGACGTTGGAGTTTACTATGCACCAGGTCCTGTGTTAAGGGGTGAGGTGTTTGATGGTGCAGATGCTGTGCGTAGATTGGAGAACTGGATGATTGAAAATCATTGTTTTCAGCCACAGTACGCTGTGTCTGAACTGAATGAGAAAAGCTTCTGGAGGATGTTTGATGCTGGTCTATATGAGCATTGTAGGAGGAAGTATGGAGCTGTTGGGACCTTCATGAGTGTGTACTACAAATCAAAGAAGGGCAGGAAAACCGAGAAGGAGGTGCGTGAAGCTGAGCAAGCCCACCTTGAAACTGCATATGCAGAAGTTGATCAACCAGCAGACTGA

Protein sequence

>Msa1385570

MSDLEAPLRPKRKKIWVDYFVQFRWILVIFVVLPISFTLYFLTYLGDVRSEWKSFKTRQKEHDANVEKVVKRLKQRNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNVLNIDKERMIARVEPLVNMGQITRVTVPMNLALAVVAELDDLTVGGLINGYGIEGSSHKYGLFSDTVVAFEIVLADGSLVKATKDNEYSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMKLTYKPVVGTLKDIAQAYADSFAPRDGDQDNDEKVPDFVETMIYSPTRAVCMTGRYASKEEAKKKGNKINSVGWWYKTWFYQHAETALKKGLFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRFLFGWLMPPKVSLLKATQGEAIRNYYHEMHVIQDILVPLYKVGDALEWVDREMEIYPLWLCPHKLYKLPVKTMVYPEAGFELQRRQGDTQDAQMFTDVGVYYAPGPVLRGEVFDGADAVRRLENWMIENHCFQPQYAVSELNEKSFWRMFDAGLYEHCRRKYGAVGTFMSVYYKSKKGRKTEKEVREAEQAHLETAYAEVDQPAD*