Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515110 | XP_003601956.1 | 99.666 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515110 | G7J3S2 | 99.666 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 0.0 | 603 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0515110 | 0.802806 | 4.711384e-49 | -8.615850e-47 |
| Msa0016440 | Msa0515110 | 0.810726 | 9.986260e-51 | -8.615850e-47 |
| Msa0045620 | Msa0515110 | 0.821362 | 4.203939e-53 | -8.615850e-47 |
| Msa0050530 | Msa0515110 | 0.807801 | 4.232372e-50 | -8.615850e-47 |
| Msa0055880 | Msa0515110 | 0.823700 | 1.202786e-53 | -8.615850e-47 |
| Msa0056000 | Msa0515110 | 0.821123 | 4.772469e-53 | -8.615850e-47 |
| Msa0086160 | Msa0515110 | 0.832718 | 8.057617e-56 | -8.615850e-47 |
| Msa0089540 | Msa0515110 | 0.801152 | 1.030387e-48 | -8.615850e-47 |
| Msa0100600 | Msa0515110 | 0.804685 | 1.918512e-49 | -8.615850e-47 |
| Msa0100890 | Msa0515110 | 0.815734 | 7.942493e-52 | -8.615850e-47 |
| Msa0132460 | Msa0515110 | 0.816019 | 6.862770e-52 | -8.615850e-47 |
| Msa0153510 | Msa0515110 | 0.825570 | 4.361277e-54 | -8.615850e-47 |
| Msa0182050 | Msa0515110 | 0.817618 | 3.003488e-52 | -8.615850e-47 |
| Msa0182100 | Msa0515110 | 0.813589 | 2.371118e-51 | -8.615850e-47 |
| Msa0188740 | Msa0515110 | 0.815539 | 8.779709e-52 | -8.615850e-47 |
| Msa0192300 | Msa0515110 | 0.822050 | 2.914349e-53 | -8.615850e-47 |
| Msa0219930 | Msa0515110 | 0.812563 | 3.981862e-51 | -8.615850e-47 |
| Msa0374050 | Msa0515110 | 0.948774 | 4.833728e-107 | -8.615850e-47 |
| Msa0388520 | Msa0515110 | 0.801735 | 7.825776e-49 | -8.615850e-47 |
| Msa0398410 | Msa0515110 | 0.827118 | 1.866358e-54 | -8.615850e-47 |
| Msa0416210 | Msa0515110 | 0.808029 | 3.784529e-50 | -8.615850e-47 |
| Msa0423230 | Msa0515110 | 0.948268 | 1.321771e-106 | -8.615850e-47 |
| Msa0467250 | Msa0515110 | 0.814528 | 1.471865e-51 | -8.615850e-47 |
| Msa0469430 | Msa0515110 | 0.984439 | 1.451345e-160 | -8.615850e-47 |
| Msa0469740 | Msa0515110 | 0.800447 | 1.435402e-48 | -8.615850e-47 |
| Msa0476540 | Msa0515110 | 0.807861 | 4.110044e-50 | -8.615850e-47 |
| Msa0270160 | Msa0515110 | 0.834074 | 3.698090e-56 | -8.615850e-47 |
| Msa0301250 | Msa0515110 | 0.821622 | 3.661405e-53 | -8.615850e-47 |
| Msa0313060 | Msa0515110 | 0.816207 | 6.227235e-52 | -8.615850e-47 |
| Msa0334380 | Msa0515110 | 0.817982 | 2.485813e-52 | -8.615850e-47 |
| Msa0495620 | Msa0515110 | 0.800678 | 1.287452e-48 | -8.615850e-47 |
| Msa0515110 | Msa0515560 | 0.806809 | 6.867203e-50 | -8.615850e-47 |
| Msa0515110 | Msa0530660 | 0.810675 | 1.024410e-50 | -8.615850e-47 |
| Msa0515110 | Msa0552570 | 0.835230 | 1.893473e-56 | -8.615850e-47 |
| Msa0515110 | Msa0556620 | 0.825849 | 3.745921e-54 | -8.615850e-47 |
| Msa0515110 | Msa0563540 | 0.801792 | 7.618691e-49 | -8.615850e-47 |
| Msa0515110 | Msa0573550 | 0.802243 | 6.154775e-49 | -8.615850e-47 |
| Msa0515110 | Msa0587180 | 0.823672 | 1.221278e-53 | -8.615850e-47 |
| Msa0515110 | Msa0623310 | 0.816231 | 6.153047e-52 | -8.615850e-47 |
| Msa0515110 | Msa0626980 | 0.806641 | 7.453333e-50 | -8.615850e-47 |
| Msa0515110 | Msa0627360 | 0.801959 | 7.038589e-49 | -8.615850e-47 |
| Msa0515110 | Msa0673940 | 0.816427 | 5.561042e-52 | -8.615850e-47 |
| Msa0515110 | Msa0687370 | 0.852184 | 5.453096e-61 | -8.615850e-47 |
| Msa0515110 | Msa0708630 | 0.818566 | 1.833059e-52 | -8.615850e-47 |
| Msa0515110 | Msa0718560 | 0.816796 | 4.598196e-52 | -8.615850e-47 |
| Msa0515110 | Msa0751720 | 0.810909 | 9.118259e-51 | -8.615850e-47 |
| Msa0515110 | Msa0831820 | 0.801188 | 1.013142e-48 | -8.615850e-47 |
| Msa0515110 | Msa0926760 | 0.826702 | 2.346969e-54 | -8.615850e-47 |
| Msa0515110 | Msa0930100 | 0.802851 | 4.610932e-49 | -8.615850e-47 |
| Msa0515110 | Msa1001620 | 0.814946 | 1.188902e-51 | -8.615850e-47 |
| Msa0515110 | Msa1008850 | 0.806820 | 6.831271e-50 | -8.615850e-47 |
| Msa0515110 | Msa1025200 | 0.834385 | 3.089742e-56 | -8.615850e-47 |
| Msa0515110 | Msa1025220 | 0.836441 | 9.342635e-57 | -8.615850e-47 |
| Msa0515110 | Msa1026710 | 0.842310 | 2.796459e-58 | -8.615850e-47 |
| Msa0515110 | Msa1078080 | 0.802948 | 4.403026e-49 | -8.615850e-47 |
| Msa0515110 | Msa1126690 | 0.806634 | 7.477526e-50 | -8.615850e-47 |
| Msa0515110 | Msa1180840 | 0.814411 | 1.561896e-51 | -8.615850e-47 |
| Msa0515110 | Msa1244920 | 0.815569 | 8.644709e-52 | -8.615850e-47 |
| Msa0515110 | Msa1255830 | 0.805955 | 1.039845e-49 | -8.615850e-47 |
| Msa0515110 | Msa1255850 | 0.807248 | 5.545690e-50 | -8.615850e-47 |
| Msa0515110 | Msa1278030 | 0.837271 | 5.735537e-57 | -8.615850e-47 |
| Msa0515110 | Msa1296090 | 0.832169 | 1.102249e-55 | -8.615850e-47 |
| Msa0515110 | Msa1334560 | 0.801209 | 1.003243e-48 | -8.615850e-47 |
| Msa0515110 | Msa1347610 | 0.837757 | 4.305936e-57 | -8.615850e-47 |
| Msa0515110 | Msa1368170 | 0.867824 | 1.029401e-65 | -8.615850e-47 |
| Msa0515110 | Msa1371800 | 0.807527 | 4.840514e-50 | -8.615850e-47 |
| Msa0515110 | Msa1376310 | 0.809412 | 1.916847e-50 | -8.615850e-47 |
| Msa0515110 | Msa1385570 | 0.877132 | 8.026376e-69 | -8.615850e-47 |
| Msa0515110 | Msa1403520 | 0.845189 | 4.743247e-59 | -8.615850e-47 |
| Msa0515110 | Msa1420830 | 0.843597 | 1.270728e-58 | -8.615850e-47 |
| Msa0515110 | Msa1424570 | 0.817895 | 2.600762e-52 | -8.615850e-47 |
| Msa0515110 | Msa1460970 | 0.804729 | 1.878582e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515110 | MtrunA17_Chr3g0124021 | 99.666 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 0.0 | 603 |
| Msa0515110 | MtrunA17_Chr3g0115701 | 59.344 | 305 | 96 | 7 | 3 | 299 | 4 | 288 | 9.01e-108 | 315 |
| Msa0515110 | MtrunA17_Chr8g0382291 | 50.321 | 312 | 115 | 6 | 5 | 296 | 4 | 295 | 2.60e-89 | 270 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515110 | AT4G39860.3 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.49e-127 | 364 |
| Msa0515110 | AT4G39860.4 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.49e-127 | 364 |
| Msa0515110 | AT4G39860.1 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.49e-127 | 364 |
| Msa0515110 | AT4G39860.2 | 62.626 | 297 | 109 | 2 | 3 | 299 | 4 | 298 | 2.72e-124 | 357 |
| Msa0515110 | AT1G78150.1 | 52.508 | 299 | 112 | 5 | 3 | 299 | 4 | 274 | 1.59e-90 | 271 |
| Msa0515110 | AT1G78150.2 | 52.508 | 299 | 112 | 5 | 3 | 299 | 4 | 274 | 1.59e-90 | 271 |
| Msa0515110 | AT1G35780.1 | 50.980 | 306 | 118 | 7 | 3 | 299 | 4 | 286 | 6.96e-87 | 262 |
| Msa0515110 | AT1G78150.3 | 47.866 | 328 | 112 | 6 | 3 | 299 | 4 | 303 | 3.24e-84 | 255 |
| Msa0515110 | AT2G22270.1 | 44.615 | 325 | 140 | 11 | 10 | 299 | 9 | 328 | 1.40e-69 | 219 |
| Msa0515110 | AT2G22270.2 | 45.423 | 284 | 116 | 10 | 51 | 299 | 10 | 289 | 2.99e-59 | 191 |
| Msa0515110 | AT1G35780.2 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.08e-58 | 187 |
| Msa0515110 | AT1G35780.4 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.08e-58 | 187 |
| Msa0515110 | AT1G35780.3 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.08e-58 | 187 |
Find 93 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGATGTCCTCAAATTTC+TGG | 0.079733 | 3_4:+66157666 | None:intergenic |
| TTAACAGGGTCTTTGATTTC+TGG | 0.136628 | 3_4:+66156424 | None:intergenic |
| CAGAAGTTTGCAGAGCTTTC+AGG | 0.210481 | 3_4:-66156553 | Msa0515110:CDS |
| GGGCAAAGTAATATCTTATT+TGG | 0.218414 | 3_4:-66156616 | Msa0515110:CDS |
| CTCTCAGCTTTGCCCTGCTC+AGG | 0.267205 | 3_4:+66156482 | None:intergenic |
| GAAATCAAAGACCCTGTTAA+AGG | 0.278225 | 3_4:-66156421 | Msa0515110:CDS |
| GGTATAGAGGTAGGCTTCTT+AGG | 0.279404 | 3_4:+66157892 | None:intergenic |
| CTCACTGGAAATGATATATT+TGG | 0.293153 | 3_4:-66157775 | Msa0515110:CDS |
| GGTTTGCGGGCACCTTTAAC+AGG | 0.293722 | 3_4:+66156409 | None:intergenic |
| TTCTTTGATGTCTTCTCAAC+AGG | 0.305067 | 3_4:+66156586 | None:intergenic |
| ATGGAACGCGGTACAATTTC+AGG | 0.309840 | 3_4:+66157745 | None:intergenic |
| TCCAGTGAGCTCCTTGGTCT+TGG | 0.319341 | 3_4:+66157789 | None:intergenic |
| GCATCTCAGCAAGCAATAAA+TGG | 0.332847 | 3_4:-66157955 | Msa0515110:intron |
| AATTCCGTGTGAACATTAGT+AGG | 0.335907 | 3_4:-66156300 | Msa0515110:three_prime_UTR |
| CTGAAAGCTCTGCAAACTTC+TGG | 0.342314 | 3_4:+66156554 | None:intergenic |
| CTTAGGACTAACACTTTCTT+CGG | 0.378680 | 3_4:+66157909 | None:intergenic |
| AACTAGCATACGCATATATC+AGG | 0.379428 | 3_4:-66158109 | Msa0515110:intron |
| CATGGCAGCTGCACGAACTT+TGG | 0.379756 | 3_4:-66157725 | Msa0515110:CDS |
| ACCGATGTCCTCAAATTTCT+GGG | 0.398231 | 3_4:+66157667 | None:intergenic |
| TTCCTGTAATTGTAGCCTGC+TGG | 0.421397 | 3_4:-66156640 | Msa0515110:intron |
| TATTAACATGAAATCTCAAC+TGG | 0.433636 | 3_4:-66156170 | Msa0515110:three_prime_UTR |
| ACTTTCAGCAAGCCATGCTC+AGG | 0.438294 | 3_4:-66158219 | Msa0515110:intron |
| TGGGACTTTGCAAACTGACT+TGG | 0.452037 | 3_4:-66157842 | Msa0515110:CDS |
| TTCACACTCAAAACAACAAT+GGG | 0.456072 | 3_4:-66159269 | Msa0515110:exon |
| TGTTTAAATCAGATCAGATA+TGG | 0.457702 | 3_4:+66159409 | None:intergenic |
| TCTCAGCTTTGCCCTGCTCA+GGG | 0.467139 | 3_4:+66156483 | None:intergenic |
| GAGCTTCTTCTTCAGTGAGC+TGG | 0.469415 | 3_4:+66159102 | None:intergenic |
| CTTTGCTACCTCAGGTATAG+AGG | 0.474305 | 3_4:+66157879 | None:intergenic |
| GTCCTCAAATTTCTGGGAAG+AGG | 0.478841 | 3_4:+66157673 | None:intergenic |
| TCACGCTGCTTTGCTACCTC+AGG | 0.479040 | 3_4:+66157871 | None:intergenic |
| GCAATGCTGCTGTCTCCACC+AGG | 0.480965 | 3_4:+66156385 | None:intergenic |
| ATCAGAAGGCTGACGAGAGC+GGG | 0.481733 | 3_4:+66159151 | None:intergenic |
| CTGACGAGAGCGGGTGGCGG+AGG | 0.484128 | 3_4:+66159160 | None:intergenic |
| GAATCAACAACAACGGGAGG+AGG | 0.485353 | 3_4:+66159182 | None:intergenic |
| CAAAGTTCGTGCAGCTGCCA+TGG | 0.485787 | 3_4:+66157726 | None:intergenic |
| CTTACTTAACAGTTAGAAGA+TGG | 0.487759 | 3_4:-66156193 | Msa0515110:three_prime_UTR |
| CGCGGTACAATTTCAGGAGG+AGG | 0.490011 | 3_4:+66157751 | None:intergenic |
| GCGGAGGAATCAACAACAAC+GGG | 0.491550 | 3_4:+66159176 | None:intergenic |
| CTGTAATTGTAGCCTGCTGG+TGG | 0.494796 | 3_4:-66156637 | Msa0515110:intron |
| TTCCATGGAGATGTTCCAGC+AGG | 0.495508 | 3_4:-66156520 | Msa0515110:CDS |
| GCAAAGCTGAGAGAAATAAC+TGG | 0.502572 | 3_4:-66156472 | Msa0515110:CDS |
| AATGCTGCTGTCTCCACCAG+GGG | 0.506313 | 3_4:+66156387 | None:intergenic |
| AACCTCTTCCCAGAAATTTG+AGG | 0.507551 | 3_4:-66157675 | Msa0515110:CDS |
| TGCACGAACTTTGGAATCAA+AGG | 0.509149 | 3_4:-66157716 | Msa0515110:CDS |
| AAGCTCAATCTCTCTCCAAA+AGG | 0.514977 | 3_4:-66159085 | Msa0515110:intron |
| GCCAAGACCAAGGAGCTCAC+TGG | 0.521289 | 3_4:-66157790 | Msa0515110:CDS |
| ATATTACTTTGCCCACCAGC+AGG | 0.525761 | 3_4:+66156625 | None:intergenic |
| AATGAATGAATGGAAGTTGA+AGG | 0.528065 | 3_4:+66159298 | None:intergenic |
| AGGCTGACGAGAGCGGGTGG+CGG | 0.529442 | 3_4:+66159157 | None:intergenic |
| ATCATTTCCAGTGAGCTCCT+TGG | 0.534478 | 3_4:+66157783 | None:intergenic |
| TGAAATTGTACCGCGTTCCA+TGG | 0.543593 | 3_4:-66157743 | Msa0515110:CDS |
| TGAATGAATGAATGAATGAA+TGG | 0.544283 | 3_4:+66159288 | None:intergenic |
| TCAACAACAACGGGAGGAGG+AGG | 0.546104 | 3_4:+66159185 | None:intergenic |
| ATTCACACTCAAAACAACAA+TGG | 0.547288 | 3_4:-66159270 | Msa0515110:exon |
| ATCAAAGGAAAGCAAGGACA+TGG | 0.548897 | 3_4:-66157701 | Msa0515110:CDS |
| GTTTGCGGGCACCTTTAACA+GGG | 0.549073 | 3_4:+66156410 | None:intergenic |
| GAAGATTCTGCATCAGAAGC+CGG | 0.549556 | 3_4:-66158147 | Msa0515110:CDS |
| GCAAAGCAGCGTGAACTGAG+TGG | 0.567625 | 3_4:-66157862 | Msa0515110:CDS |
| TTGGTGTGTGTCTTTCTCAC+CGG | 0.575218 | 3_4:+66159239 | None:intergenic |
| ACACTTCCGATCTCCTCACT+TGG | 0.577893 | 3_4:-66159217 | Msa0515110:CDS |
| TTTGGAATCAAAGGAAAGCA+AGG | 0.578160 | 3_4:-66157707 | Msa0515110:CDS |
| TCCCAGAAATTTGAGGACAT+CGG | 0.579400 | 3_4:-66157668 | Msa0515110:CDS |
| ATCCTGCTGGAACATCTCCA+TGG | 0.579980 | 3_4:+66156518 | None:intergenic |
| GGCAGTGACATATTTGCTGA+TGG | 0.581577 | 3_4:-66156451 | Msa0515110:CDS |
| GCTACCTCAGGTATAGAGGT+AGG | 0.582241 | 3_4:+66157883 | None:intergenic |
| AAATATCATAATTTAGAGCA+AGG | 0.582571 | 3_4:+66156363 | None:intergenic |
| ATGAAAGAGATGAGTGGACA+TGG | 0.583015 | 3_4:-66158189 | Msa0515110:CDS |
| AGTGAGGAGATCGGAAGTGT+TGG | 0.589898 | 3_4:+66159220 | None:intergenic |
| ATTCCGTGTGAACATTAGTA+GGG | 0.590764 | 3_4:-66156299 | Msa0515110:three_prime_UTR |
| TTCCGATCTCCTCACTTGGT+CGG | 0.594758 | 3_4:-66159213 | Msa0515110:CDS |
| CAATGCTGCTGTCTCCACCA+GGG | 0.594808 | 3_4:+66156386 | None:intergenic |
| TTCCGACCAAGTGAGGAGAT+CGG | 0.598387 | 3_4:+66159211 | None:intergenic |
| CGTGCAGCTGCCATGGAACG+CGG | 0.599947 | 3_4:+66157733 | None:intergenic |
| AACAACAATGGGAAGCACTC+CGG | 0.604363 | 3_4:-66159258 | Msa0515110:exon |
| TATAAAATGAAAGAGATGAG+TGG | 0.604599 | 3_4:-66158195 | Msa0515110:CDS |
| CAAAGCAGCGTGAACTGAGT+GGG | 0.604931 | 3_4:-66157861 | Msa0515110:CDS |
| ACCTTGCTGATTCTATCAGA+AGG | 0.610704 | 3_4:+66159137 | None:intergenic |
| AGAAGGCTGACGAGAGCGGG+TGG | 0.616356 | 3_4:+66159154 | None:intergenic |
| TATCAGAAGGCTGACGAGAG+CGG | 0.623249 | 3_4:+66159150 | None:intergenic |
| GAGGAATCAACAACAACGGG+AGG | 0.627908 | 3_4:+66159179 | None:intergenic |
| GAGGAACTTCCGACCAAGTG+AGG | 0.628730 | 3_4:+66159204 | None:intergenic |
| ATGCTGCTGTCTCCACCAGG+GGG | 0.629578 | 3_4:+66156388 | None:intergenic |
| TTACCCTACTAATGTTCACA+CGG | 0.631075 | 3_4:+66156296 | None:intergenic |
| GCGGTACAATTTCAGGAGGA+GGG | 0.631603 | 3_4:+66157752 | None:intergenic |
| GCCTTCTGATAGAATCAGCA+AGG | 0.638816 | 3_4:-66159138 | Msa0515110:CDS |
| TGTAATTGTAGCCTGCTGGT+GGG | 0.644942 | 3_4:-66156636 | Msa0515110:intron |
| CTTTCAGCAAGCCATGCTCA+GGG | 0.644956 | 3_4:-66158218 | Msa0515110:intron |
| AATATCAAATGCCAAGACCA+AGG | 0.645109 | 3_4:-66157800 | Msa0515110:CDS |
| GGCGGAGGAATCAACAACAA+CGG | 0.655351 | 3_4:+66159175 | None:intergenic |
| TCAAAGGAAAGCAAGGACAT+GGG | 0.665351 | 3_4:-66157700 | Msa0515110:CDS |
| GAAGCCTACCTCTATACCTG+AGG | 0.688793 | 3_4:-66157887 | Msa0515110:CDS |
| GAACGCGGTACAATTTCAGG+AGG | 0.704954 | 3_4:+66157748 | None:intergenic |
| TGGAAGTTGAAGGAACAACG+TGG | 0.784347 | 3_4:+66159308 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCAAATTGAAAATAAA+CGG | + | chr3_4:66156748-66156767 | None:intergenic | 15.0% |
| !!! | TATAATATTTTCTTATGACA+TGG | - | chr3_4:66158046-66158065 | Msa0515110:intron | 15.0% |
| !! | AAAAAATAAAAATGAAGAGT+TGG | + | chr3_4:66158214-66158233 | None:intergenic | 15.0% |
| !!! | ACTCTTCATTTTTATTTTTT+TGG | - | chr3_4:66158214-66158233 | Msa0515110:CDS | 15.0% |
| !!! | CTCTTCATTTTTATTTTTTT+GGG | - | chr3_4:66158215-66158234 | Msa0515110:intron | 15.0% |
| !!! | TCTTCATTTTTATTTTTTTG+GGG | - | chr3_4:66158216-66158235 | Msa0515110:intron | 15.0% |
| !!! | TAAAATTTAAGTCTGTTTTT+GGG | - | chr3_4:66158524-66158543 | Msa0515110:intron | 15.0% |
| !!! | ATCTGTTTCTTAATTTGAAA+TGG | - | chr3_4:66156645-66156664 | Msa0515110:intron | 20.0% |
| !!! | TCAAACTCTACTTTTAAATT+TGG | - | chr3_4:66156870-66156889 | Msa0515110:intron | 20.0% |
| !!! | AAAAAAATCACTTTTTTGTG+TGG | + | chr3_4:66157094-66157113 | None:intergenic | 20.0% |
| !!! | ATTAGCTTTTTTCAAATACA+AGG | + | chr3_4:66157155-66157174 | None:intergenic | 20.0% |
| !! | TCATATTTAAGTGTTTGTTT+AGG | + | chr3_4:66157243-66157262 | None:intergenic | 20.0% |
| !!! | GAAAAAAAATCTGAAACAAA+CGG | - | chr3_4:66157281-66157300 | Msa0515110:intron | 20.0% |
| !!! | AAAAAAAATCTGAAACAAAC+GGG | - | chr3_4:66157282-66157301 | Msa0515110:intron | 20.0% |
| !!! | ATTCACAATTTTCATAACAA+AGG | + | chr3_4:66157309-66157328 | None:intergenic | 20.0% |
| !! | TCAATTTGATGTTTGAAAAA+TGG | + | chr3_4:66157557-66157576 | None:intergenic | 20.0% |
| !! | ATCATTATACATTGTATGAA+TGG | - | chr3_4:66157998-66158017 | Msa0515110:intron | 20.0% |
| !!! | ATATTTAAATTTTGCATTCC+AGG | + | chr3_4:66158188-66158207 | None:intergenic | 20.0% |
| !!! | GTAAAATTTAAGTCTGTTTT+TGG | - | chr3_4:66158523-66158542 | Msa0515110:intron | 20.0% |
| !! | AAACACATAAAAGAAACAAA+TGG | + | chr3_4:66158759-66158778 | None:intergenic | 20.0% |
| !!! | AAATATCATAATTTAGAGCA+AGG | + | chr3_4:66159229-66159248 | None:intergenic | 20.0% |
| !! | ATAAAAATCCTACATCAAAA+GGG | + | chr3_4:66159269-66159288 | None:intergenic | 20.0% |
| !! | TATAAAAATCCTACATCAAA+AGG | + | chr3_4:66159270-66159289 | None:intergenic | 20.0% |
| ! | TGTTTAAATCAGATCAGATA+TGG | + | chr3_4:66156183-66156202 | None:intergenic | 25.0% |
| ! | TGAATGAATGAATGAATGAA+TGG | + | chr3_4:66156304-66156323 | None:intergenic | 25.0% |
| ! | AATTAAGAAACAGATCTATG+CGG | + | chr3_4:66156640-66156659 | None:intergenic | 25.0% |
| ! | TTTAGTTGAATCAAGATTAG+TGG | - | chr3_4:66156792-66156811 | Msa0515110:intron | 25.0% |
| !!! | CTCTAAAATGAAAAGCTATA+AGG | + | chr3_4:66157178-66157197 | None:intergenic | 25.0% |
| !! | AAAAAAATCTGAAACAAACG+GGG | - | chr3_4:66157283-66157302 | Msa0515110:intron | 25.0% |
| ! | TATAAAATGAAAGAGATGAG+TGG | - | chr3_4:66157394-66157413 | Msa0515110:intron | 25.0% |
| !! | AGTTTTTGAATTAACAGAAC+CGG | + | chr3_4:66157464-66157483 | None:intergenic | 25.0% |
| ! | GCATATATCAGGTTTATATT+TGG | - | chr3_4:66157491-66157510 | Msa0515110:intron | 25.0% |
| ! | ATGTTTGAAAAATGGCTATA+AGG | + | chr3_4:66157549-66157568 | None:intergenic | 25.0% |
| ! | TTCAAACATCAAATTGAACT+CGG | - | chr3_4:66157560-66157579 | Msa0515110:intron | 25.0% |
| !!! | TCATTTTTATTTTTTTGGGG+TGG | - | chr3_4:66158219-66158238 | Msa0515110:intron | 25.0% |
| !!! | CATTTTTATTTTTTTGGGGT+GGG | - | chr3_4:66158220-66158239 | Msa0515110:intron | 25.0% |
| !!! | ATTTTTATTTTTTTGGGGTG+GGG | - | chr3_4:66158221-66158240 | Msa0515110:intron | 25.0% |
| !!! | TGTCTTTGAAATTTCTATGA+TGG | - | chr3_4:66158479-66158498 | Msa0515110:intron | 25.0% |
| ! | AATAAGATGTGTGTTATGTT+AGG | - | chr3_4:66158591-66158610 | Msa0515110:intron | 25.0% |
| !! | ATTTGGCAAAAGCTATATTT+TGG | + | chr3_4:66158669-66158688 | None:intergenic | 25.0% |
| ! | AAAGAAACAAATGGACAAAT+GGG | + | chr3_4:66158750-66158769 | None:intergenic | 25.0% |
| ! | AAAAGAAACAAATGGACAAA+TGG | + | chr3_4:66158751-66158770 | None:intergenic | 25.0% |
| !! | AAAACTATTTTCTCACAAAC+TGG | + | chr3_4:66158864-66158883 | None:intergenic | 25.0% |
| ! | AACTCGTAAGTCATAAATAT+GGG | + | chr3_4:66158906-66158925 | None:intergenic | 25.0% |
| ! | TAACTCGTAAGTCATAAATA+TGG | + | chr3_4:66158907-66158926 | None:intergenic | 25.0% |
| ! | TAAAAATCCTACATCAAAAG+GGG | + | chr3_4:66159268-66159287 | None:intergenic | 25.0% |
| !! | ATTTTCAATTATCAGCATCT+AGG | - | chr3_4:66159318-66159337 | Msa0515110:five_prime_UTR | 25.0% |
| ! | TATTAACATGAAATCTCAAC+TGG | - | chr3_4:66159419-66159438 | Msa0515110:five_prime_UTR | 25.0% |
| AATGAATGAATGGAAGTTGA+AGG | + | chr3_4:66156294-66156313 | None:intergenic | 30.0% | |
| ATTCACACTCAAAACAACAA+TGG | - | chr3_4:66156319-66156338 | Msa0515110:three_prime_UTR | 30.0% | |
| TTCACACTCAAAACAACAAT+GGG | - | chr3_4:66156320-66156339 | Msa0515110:three_prime_UTR | 30.0% | |
| !! | AAATGAAAGTACGTACCTTT+TGG | + | chr3_4:66156522-66156541 | None:intergenic | 30.0% |
| GTAAAAGATCTGATCTGAAA+AGG | + | chr3_4:66156556-66156575 | None:intergenic | 30.0% | |
| !!! | CGTTTAAAGAAAGTGTTTTC+AGG | - | chr3_4:66156717-66156736 | Msa0515110:intron | 30.0% |
| !!! | AGCTTTTTTCAAATACAAGG+AGG | + | chr3_4:66157152-66157171 | None:intergenic | 30.0% |
| GAAAATTGTGAATCTAAGCT+AGG | - | chr3_4:66157316-66157335 | Msa0515110:intron | 30.0% | |
| CTCACTGGAAATGATATATT+TGG | - | chr3_4:66157814-66157833 | Msa0515110:CDS | 30.0% | |
| TTCTAATGTAAGTGTCTTCT+AGG | - | chr3_4:66157951-66157970 | Msa0515110:intron | 30.0% | |
| AAGATTCAGGTAGTTGTTAA+TGG | + | chr3_4:66158114-66158133 | None:intergenic | 30.0% | |
| !!! | TTTTTATTTTTTTGGGGTGG+GGG | - | chr3_4:66158222-66158241 | Msa0515110:intron | 30.0% |
| !! | TGGCTTCAATTTAATTTGAC+AGG | + | chr3_4:66158414-66158433 | None:intergenic | 30.0% |
| AAGACAATGTAACAAACTGA+TGG | + | chr3_4:66158465-66158484 | None:intergenic | 30.0% | |
| ! | TATAGCTTTTGCCAAATTCT+TGG | - | chr3_4:66158672-66158691 | Msa0515110:intron | 30.0% |
| ACTCGTAAGTCATAAATATG+GGG | + | chr3_4:66158905-66158924 | None:intergenic | 30.0% | |
| GGGCAAAGTAATATCTTATT+TGG | - | chr3_4:66158973-66158992 | Msa0515110:intron | 30.0% | |
| ! | TCAGGCAATAATATTTTCCA+TGG | - | chr3_4:66159054-66159073 | Msa0515110:intron | 30.0% |
| CTTACTTAACAGTTAGAAGA+TGG | - | chr3_4:66159396-66159415 | Msa0515110:five_prime_UTR | 30.0% | |
| AAGATCTGATCTGAAAAGGA+AGG | + | chr3_4:66156552-66156571 | None:intergenic | 35.0% | |
| GATCGAAGAACGATCAAAAA+AGG | + | chr3_4:66156592-66156611 | None:intergenic | 35.0% | |
| ATGCAATCTGCAATCTTATG+TGG | - | chr3_4:66156769-66156788 | Msa0515110:intron | 35.0% | |
| ACACATTCACGTAGTTAACA+TGG | + | chr3_4:66156925-66156944 | None:intergenic | 35.0% | |
| ! | TTCATTTTATACCCTGAGCA+TGG | + | chr3_4:66157385-66157404 | None:intergenic | 35.0% |
| ! | GAGTGGACATGGTATATTTT+CGG | - | chr3_4:66157411-66157430 | Msa0515110:intron | 35.0% |
| ! | CATGGTATATTTTCGGACAA+TGG | - | chr3_4:66157418-66157437 | Msa0515110:intron | 35.0% |
| AACTAGCATACGCATATATC+AGG | - | chr3_4:66157480-66157499 | Msa0515110:intron | 35.0% | |
| CTTAGGACTAACACTTTCTT+CGG | + | chr3_4:66157683-66157702 | None:intergenic | 35.0% | |
| AATATCAAATGCCAAGACCA+AGG | - | chr3_4:66157789-66157808 | Msa0515110:CDS | 35.0% | |
| ! | TTTGGAATCAAAGGAAAGCA+AGG | - | chr3_4:66157882-66157901 | Msa0515110:CDS | 35.0% |
| AACAACTACCTGAATCTTAG+TGG | - | chr3_4:66158116-66158135 | Msa0515110:CDS | 35.0% | |
| !!! | TAGGGGGTAAGATTTTAGTT+TGG | - | chr3_4:66158246-66158265 | Msa0515110:intron | 35.0% |
| !!! | AGGGGGTAAGATTTTAGTTT+GGG | - | chr3_4:66158247-66158266 | Msa0515110:intron | 35.0% |
| !!! | TAAGATTTTAGTTTGGGGGT+TGG | - | chr3_4:66158253-66158272 | Msa0515110:intron | 35.0% |
| !!! | AAGATTTTAGTTTGGGGGTT+GGG | - | chr3_4:66158254-66158273 | Msa0515110:intron | 35.0% |
| !!! | TTAAGTCTGTTTTTGGGTGT+TGG | - | chr3_4:66158530-66158549 | Msa0515110:intron | 35.0% |
| !!! | TAAGTCTGTTTTTGGGTGTT+GGG | - | chr3_4:66158531-66158550 | Msa0515110:intron | 35.0% |
| GTGTGTTATGTTAGGATTGA+CGG | - | chr3_4:66158599-66158618 | Msa0515110:intron | 35.0% | |
| GAGATTGACGAAATCACAAT+TGG | + | chr3_4:66158701-66158720 | None:intergenic | 35.0% | |
| ATAAGCAGTAGGTACTTTGT+AGG | + | chr3_4:66158808-66158827 | None:intergenic | 35.0% | |
| TGTTGAGCTAAATAAGCAGT+AGG | + | chr3_4:66158819-66158838 | None:intergenic | 35.0% | |
| ! | CTATTTTCTCACAAACTGGA+CGG | + | chr3_4:66158860-66158879 | None:intergenic | 35.0% |
| CTACAATTACAGGAAAAGGA+AGG | + | chr3_4:66158944-66158963 | None:intergenic | 35.0% | |
| TTCTTTGATGTCTTCTCAAC+AGG | + | chr3_4:66159006-66159025 | None:intergenic | 35.0% | |
| ! | TTAACAGGGTCTTTGATTTC+TGG | + | chr3_4:66159168-66159187 | None:intergenic | 35.0% |
| GAAATCAAAGACCCTGTTAA+AGG | - | chr3_4:66159168-66159187 | Msa0515110:CDS | 35.0% | |
| AATTCCGTGTGAACATTAGT+AGG | - | chr3_4:66159289-66159308 | Msa0515110:five_prime_UTR | 35.0% | |
| ATTCCGTGTGAACATTAGTA+GGG | - | chr3_4:66159290-66159309 | Msa0515110:five_prime_UTR | 35.0% | |
| TTACCCTACTAATGTTCACA+CGG | + | chr3_4:66159296-66159315 | None:intergenic | 35.0% | |
| !! | ACCTTGCTGATTCTATCAGA+AGG | + | chr3_4:66156455-66156474 | None:intergenic | 40.0% |
| AAGCTCAATCTCTCTCCAAA+AGG | - | chr3_4:66156504-66156523 | Msa0515110:CDS | 40.0% | |
| ATCGTTGGATTGAGATCAGA+CGG | + | chr3_4:66156897-66156916 | None:intergenic | 40.0% | |
| GTTAACATGGATGTGATCGT+TGG | + | chr3_4:66156912-66156931 | None:intergenic | 40.0% | |
| TGTGAATCTAAGCTAGGAGA+TGG | - | chr3_4:66157322-66157341 | Msa0515110:intron | 40.0% | |
| ATGAAAGAGATGAGTGGACA+TGG | - | chr3_4:66157400-66157419 | Msa0515110:intron | 40.0% | |
| TCAAACTGGACTCAAGATCA+AGG | + | chr3_4:66157524-66157543 | None:intergenic | 40.0% | |
| ATGGCTATAAGGTCTCAAAC+TGG | + | chr3_4:66157538-66157557 | None:intergenic | 40.0% | |
| GCATCTCAGCAAGCAATAAA+TGG | - | chr3_4:66157634-66157653 | Msa0515110:intron | 40.0% | |
| !! | TGCACGAACTTTGGAATCAA+AGG | - | chr3_4:66157873-66157892 | Msa0515110:CDS | 40.0% |
| ATCAAAGGAAAGCAAGGACA+TGG | - | chr3_4:66157888-66157907 | Msa0515110:CDS | 40.0% | |
| TCAAAGGAAAGCAAGGACAT+GGG | - | chr3_4:66157889-66157908 | Msa0515110:CDS | 40.0% | |
| AACCTCTTCCCAGAAATTTG+AGG | - | chr3_4:66157914-66157933 | Msa0515110:CDS | 40.0% | |
| TCCCAGAAATTTGAGGACAT+CGG | - | chr3_4:66157921-66157940 | Msa0515110:CDS | 40.0% | |
| ACCGATGTCCTCAAATTTCT+GGG | + | chr3_4:66157925-66157944 | None:intergenic | 40.0% | |
| ATTCATCGCCACTAAGATTC+AGG | + | chr3_4:66158127-66158146 | None:intergenic | 40.0% | |
| ! | GAAAGCATAAGGTAAACTGG+TGG | + | chr3_4:66158166-66158185 | None:intergenic | 40.0% |
| ! | CAGGAAAGCATAAGGTAAAC+TGG | + | chr3_4:66158169-66158188 | None:intergenic | 40.0% |
| CAGTTTACCTTATGCTTTCC+TGG | - | chr3_4:66158167-66158186 | Msa0515110:CDS | 40.0% | |
| ! | TTGCATTCCAGGAAAGCATA+AGG | + | chr3_4:66158177-66158196 | None:intergenic | 40.0% |
| !!! | GGGGGTAAGATTTTAGTTTG+GGG | - | chr3_4:66158248-66158267 | Msa0515110:intron | 40.0% |
| !!! | GGGGTAAGATTTTAGTTTGG+GGG | - | chr3_4:66158249-66158268 | Msa0515110:intron | 40.0% |
| !!! | AGATTTTAGTTTGGGGGTTG+GGG | - | chr3_4:66158255-66158274 | Msa0515110:intron | 40.0% |
| TAATACTGTTGCAGCACATG+AGG | - | chr3_4:66158327-66158346 | Msa0515110:intron | 40.0% | |
| GTGTAAGATGTCCACAAGAT+TGG | + | chr3_4:66158354-66158373 | None:intergenic | 40.0% | |
| ! | TAACAAACTGATGGACCTTC+CGG | + | chr3_4:66158456-66158475 | None:intergenic | 40.0% |
| !!! | AAGTCTGTTTTTGGGTGTTG+GGG | - | chr3_4:66158532-66158551 | Msa0515110:intron | 40.0% |
| CGGTGAGTTTGGTAAAATCA+CGG | - | chr3_4:66158619-66158638 | Msa0515110:intron | 40.0% | |
| ! | AGCTTTTGCCAAATTCTTGG+TGG | - | chr3_4:66158675-66158694 | Msa0515110:intron | 40.0% |
| ACAATTGGCCACCAAGAATT+TGG | + | chr3_4:66158686-66158705 | None:intergenic | 40.0% | |
| AATGGGACTGAGAACTTGAT+TGG | + | chr3_4:66158733-66158752 | None:intergenic | 40.0% | |
| CAGGCTACAATTACAGGAAA+AGG | + | chr3_4:66158948-66158967 | None:intergenic | 40.0% | |
| GCAAAGCTGAGAGAAATAAC+TGG | - | chr3_4:66159117-66159136 | Msa0515110:CDS | 40.0% | |
| ! | AAGCTTACCCCTTTTGATGT+AGG | - | chr3_4:66159258-66159277 | Msa0515110:exon | 40.0% |
| TGGAAGTTGAAGGAACAACG+TGG | + | chr3_4:66156284-66156303 | None:intergenic | 45.0% | |
| !! | AACAACAATGGGAAGCACTC+CGG | - | chr3_4:66156331-66156350 | Msa0515110:three_prime_UTR | 45.0% |
| TTGGTGTGTGTCTTTCTCAC+CGG | + | chr3_4:66156353-66156372 | None:intergenic | 45.0% | |
| GCCTTCTGATAGAATCAGCA+AGG | - | chr3_4:66156451-66156470 | Msa0515110:CDS | 45.0% | |
| GAAGATTCTGCATCAGAAGC+CGG | - | chr3_4:66157442-66157461 | Msa0515110:intron | 45.0% | |
| GGTATAGAGGTAGGCTTCTT+AGG | + | chr3_4:66157700-66157719 | None:intergenic | 45.0% | |
| CTTTGCTACCTCAGGTATAG+AGG | + | chr3_4:66157713-66157732 | None:intergenic | 45.0% | |
| TGGGACTTTGCAAACTGACT+TGG | - | chr3_4:66157747-66157766 | Msa0515110:CDS | 45.0% | |
| ATCATTTCCAGTGAGCTCCT+TGG | + | chr3_4:66157809-66157828 | None:intergenic | 45.0% | |
| ATGGAACGCGGTACAATTTC+AGG | + | chr3_4:66157847-66157866 | None:intergenic | 45.0% | |
| TGAAATTGTACCGCGTTCCA+TGG | - | chr3_4:66157846-66157865 | Msa0515110:CDS | 45.0% | |
| ! | GTCCTCAAATTTCTGGGAAG+AGG | + | chr3_4:66157919-66157938 | None:intergenic | 45.0% |
| CACCGATGTCCTCAAATTTC+TGG | + | chr3_4:66157926-66157945 | None:intergenic | 45.0% | |
| ! | GTAAACTGGTGGATGGTCAA+GGG | + | chr3_4:66158155-66158174 | None:intergenic | 45.0% |
| GCATAAGGTAAACTGGTGGA+TGG | + | chr3_4:66158162-66158181 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTGGGGTGGGGGTT+AGG | - | chr3_4:66158227-66158246 | Msa0515110:intron | 45.0% |
| !!! | TTTTTTTGGGGTGGGGGTTA+GGG | - | chr3_4:66158228-66158247 | Msa0515110:intron | 45.0% |
| !!! | GATTTTAGTTTGGGGGTTGG+GGG | - | chr3_4:66158256-66158275 | Msa0515110:intron | 45.0% |
| !!! | ATTTTAGTTTGGGGGTTGGG+GGG | - | chr3_4:66158257-66158276 | Msa0515110:intron | 45.0% |
| GACAGGCACATGTTAAGAGA+AGG | + | chr3_4:66158397-66158416 | None:intergenic | 45.0% | |
| GATGCAATGCATGTGCAGTT+TGG | + | chr3_4:66158434-66158453 | None:intergenic | 45.0% | |
| AACTGCACATGCATTGCATC+CGG | - | chr3_4:66158434-66158453 | Msa0515110:intron | 45.0% | |
| !!! | AGTCTGTTTTTGGGTGTTGG+GGG | - | chr3_4:66158533-66158552 | Msa0515110:intron | 45.0% |
| GTTAGGATTGACGGTGAGTT+TGG | - | chr3_4:66158608-66158627 | Msa0515110:intron | 45.0% | |
| CTCACAAACTGGACGGTTTA+AGG | + | chr3_4:66158853-66158872 | None:intergenic | 45.0% | |
| CAGGAAAAGGAAGGTTAACC+TGG | + | chr3_4:66158935-66158954 | None:intergenic | 45.0% | |
| TTCCTGTAATTGTAGCCTGC+TGG | - | chr3_4:66158949-66158968 | Msa0515110:intron | 45.0% | |
| TGTAATTGTAGCCTGCTGGT+GGG | - | chr3_4:66158953-66158972 | Msa0515110:intron | 45.0% | |
| ATATTACTTTGCCCACCAGC+AGG | + | chr3_4:66158967-66158986 | None:intergenic | 45.0% | |
| CTGAAAGCTCTGCAAACTTC+TGG | + | chr3_4:66159038-66159057 | None:intergenic | 45.0% | |
| CAGAAGTTTGCAGAGCTTTC+AGG | - | chr3_4:66159036-66159055 | Msa0515110:intron | 45.0% | |
| !! | GATTTTTCAGCTGATCCTGC+TGG | + | chr3_4:66159087-66159106 | None:intergenic | 45.0% |
| AGCTGAAAAATCCCTGAGCA+GGG | - | chr3_4:66159095-66159114 | Msa0515110:CDS | 45.0% | |
| ! | GGCAGTGACATATTTGCTGA+TGG | - | chr3_4:66159138-66159157 | Msa0515110:CDS | 45.0% |
| ! | AGTGAGGAGATCGGAAGTGT+TGG | + | chr3_4:66156372-66156391 | None:intergenic | 50.0% |
| ACACTTCCGATCTCCTCACT+TGG | - | chr3_4:66156372-66156391 | Msa0515110:exon | 50.0% | |
| TTCCGATCTCCTCACTTGGT+CGG | - | chr3_4:66156376-66156395 | Msa0515110:CDS | 50.0% | |
| TTCCGACCAAGTGAGGAGAT+CGG | + | chr3_4:66156381-66156400 | None:intergenic | 50.0% | |
| GAATCAACAACAACGGGAGG+AGG | + | chr3_4:66156410-66156429 | None:intergenic | 50.0% | |
| GAGGAATCAACAACAACGGG+AGG | + | chr3_4:66156413-66156432 | None:intergenic | 50.0% | |
| GCGGAGGAATCAACAACAAC+GGG | + | chr3_4:66156416-66156435 | None:intergenic | 50.0% | |
| GGCGGAGGAATCAACAACAA+CGG | + | chr3_4:66156417-66156436 | None:intergenic | 50.0% | |
| TATCAGAAGGCTGACGAGAG+CGG | + | chr3_4:66156442-66156461 | None:intergenic | 50.0% | |
| GAGCTTCTTCTTCAGTGAGC+TGG | + | chr3_4:66156490-66156509 | None:intergenic | 50.0% | |
| ACTTTCAGCAAGCCATGCTC+AGG | - | chr3_4:66157370-66157389 | Msa0515110:intron | 50.0% | |
| CTTTCAGCAAGCCATGCTCA+GGG | - | chr3_4:66157371-66157390 | Msa0515110:intron | 50.0% | |
| GAAGCCTACCTCTATACCTG+AGG | - | chr3_4:66157702-66157721 | Msa0515110:CDS | 50.0% | |
| GCTACCTCAGGTATAGAGGT+AGG | + | chr3_4:66157709-66157728 | None:intergenic | 50.0% | |
| CAAAGCAGCGTGAACTGAGT+GGG | - | chr3_4:66157728-66157747 | Msa0515110:CDS | 50.0% | |
| GCGGTACAATTTCAGGAGGA+GGG | + | chr3_4:66157840-66157859 | None:intergenic | 50.0% | |
| GAACGCGGTACAATTTCAGG+AGG | + | chr3_4:66157844-66157863 | None:intergenic | 50.0% | |
| ! | GGTAAACTGGTGGATGGTCA+AGG | + | chr3_4:66158156-66158175 | None:intergenic | 50.0% |
| !!! | TTTTTTGGGGTGGGGGTTAG+GGG | - | chr3_4:66158229-66158248 | Msa0515110:intron | 50.0% |
| GCACATGAGGACCAATCTTG+TGG | - | chr3_4:66158340-66158359 | Msa0515110:intron | 50.0% | |
| !!! | TGTTTTTGGGTGTTGGGGGT+GGG | - | chr3_4:66158537-66158556 | Msa0515110:intron | 50.0% |
| GACTTACGAGTTACGACTCC+AGG | - | chr3_4:66158914-66158933 | Msa0515110:intron | 50.0% | |
| CACCAGCAGGCTACAATTAC+AGG | + | chr3_4:66158954-66158973 | None:intergenic | 50.0% | |
| CTGTAATTGTAGCCTGCTGG+TGG | - | chr3_4:66158952-66158971 | Msa0515110:intron | 50.0% | |
| TTCCATGGAGATGTTCCAGC+AGG | - | chr3_4:66159069-66159088 | Msa0515110:intron | 50.0% | |
| ATCCTGCTGGAACATCTCCA+TGG | + | chr3_4:66159074-66159093 | None:intergenic | 50.0% | |
| CAGCTGAAAAATCCCTGAGC+AGG | - | chr3_4:66159094-66159113 | Msa0515110:CDS | 50.0% | |
| GTTTGCGGGCACCTTTAACA+GGG | + | chr3_4:66159182-66159201 | None:intergenic | 50.0% | |
| GAGGAACTTCCGACCAAGTG+AGG | + | chr3_4:66156388-66156407 | None:intergenic | 55.0% | |
| TCAACAACAACGGGAGGAGG+AGG | + | chr3_4:66156407-66156426 | None:intergenic | 55.0% | |
| ATCAGAAGGCTGACGAGAGC+GGG | + | chr3_4:66156441-66156460 | None:intergenic | 55.0% | |
| ! | TCACGCTGCTTTGCTACCTC+AGG | + | chr3_4:66157721-66157740 | None:intergenic | 55.0% |
| GCAAAGCAGCGTGAACTGAG+TGG | - | chr3_4:66157727-66157746 | Msa0515110:CDS | 55.0% | |
| TCCAGTGAGCTCCTTGGTCT+TGG | + | chr3_4:66157803-66157822 | None:intergenic | 55.0% | |
| CGCGGTACAATTTCAGGAGG+AGG | + | chr3_4:66157841-66157860 | None:intergenic | 55.0% | |
| CAAAGTTCGTGCAGCTGCCA+TGG | + | chr3_4:66157866-66157885 | None:intergenic | 55.0% | |
| CATGGCAGCTGCACGAACTT+TGG | - | chr3_4:66157864-66157883 | Msa0515110:CDS | 55.0% | |
| !!! | TTTTTGGGGTGGGGGTTAGG+GGG | - | chr3_4:66158230-66158249 | Msa0515110:intron | 55.0% |
| GCACATGCATTGCATCCGGA+AGG | - | chr3_4:66158438-66158457 | Msa0515110:intron | 55.0% | |
| !!! | CTGTTTTTGGGTGTTGGGGG+TGG | - | chr3_4:66158536-66158555 | Msa0515110:intron | 55.0% |
| !!! | GTTTTTGGGTGTTGGGGGTG+GGG | - | chr3_4:66158538-66158557 | Msa0515110:intron | 55.0% |
| TCTCAGCTTTGCCCTGCTCA+GGG | + | chr3_4:66159109-66159128 | None:intergenic | 55.0% | |
| GGTTTGCGGGCACCTTTAAC+AGG | + | chr3_4:66159183-66159202 | None:intergenic | 55.0% | |
| AATGCTGCTGTCTCCACCAG+GGG | + | chr3_4:66159205-66159224 | None:intergenic | 55.0% | |
| CAATGCTGCTGTCTCCACCA+GGG | + | chr3_4:66159206-66159225 | None:intergenic | 55.0% | |
| GCCAAGACCAAGGAGCTCAC+TGG | - | chr3_4:66157799-66157818 | Msa0515110:CDS | 60.0% | |
| CTCTCAGCTTTGCCCTGCTC+AGG | + | chr3_4:66159110-66159129 | None:intergenic | 60.0% | |
| TGTCTCCACCAGGGGGTTTG+CGG | + | chr3_4:66159197-66159216 | None:intergenic | 60.0% | |
| ATGCTGCTGTCTCCACCAGG+GGG | + | chr3_4:66159204-66159223 | None:intergenic | 60.0% | |
| GCAATGCTGCTGTCTCCACC+AGG | + | chr3_4:66159207-66159226 | None:intergenic | 60.0% | |
| AGAAGGCTGACGAGAGCGGG+TGG | + | chr3_4:66156438-66156457 | None:intergenic | 65.0% | |
| CGTGCAGCTGCCATGGAACG+CGG | + | chr3_4:66157859-66157878 | None:intergenic | 65.0% | |
| !! | AAAGGTGCCCGCAAACCCCC+TGG | - | chr3_4:66159186-66159205 | Msa0515110:CDS | 65.0% |
| GTCTCCACCAGGGGGTTTGC+GGG | + | chr3_4:66159196-66159215 | None:intergenic | 65.0% | |
| AGGCTGACGAGAGCGGGTGG+CGG | + | chr3_4:66156435-66156454 | None:intergenic | 70.0% | |
| ! | CTGACGAGAGCGGGTGGCGG+AGG | + | chr3_4:66156432-66156451 | None:intergenic | 75.0% |
| GGTGCCCGCAAACCCCCTGG+TGG | - | chr3_4:66159189-66159208 | Msa0515110:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 66156132 | 66159479 | 66156132 | ID=Msa0515110;Name=Msa0515110 |
| chr3_4 | mRNA | 66156132 | 66159479 | 66156132 | ID=Msa0515110-mRNA-1;Parent=Msa0515110;Name=Msa0515110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=206|1|1|1|1|1|4|243|299 |
| chr3_4 | exon | 66156132 | 66156647 | 66156132 | ID=Msa0515110-mRNA-1:exon:17016;Parent=Msa0515110-mRNA-1 |
| chr3_4 | exon | 66157654 | 66157968 | 66157654 | ID=Msa0515110-mRNA-1:exon:17015;Parent=Msa0515110-mRNA-1 |
| chr3_4 | exon | 66158110 | 66158233 | 66158110 | ID=Msa0515110-mRNA-1:exon:17014;Parent=Msa0515110-mRNA-1 |
| chr3_4 | exon | 66159086 | 66159479 | 66159086 | ID=Msa0515110-mRNA-1:exon:17013;Parent=Msa0515110-mRNA-1 |
| chr3_4 | five_prime_UTR | 66159274 | 66159479 | 66159274 | ID=Msa0515110-mRNA-1:five_prime_utr;Parent=Msa0515110-mRNA-1 |
| chr3_4 | CDS | 66159086 | 66159273 | 66159086 | ID=Msa0515110-mRNA-1:cds;Parent=Msa0515110-mRNA-1 |
| chr3_4 | CDS | 66158110 | 66158233 | 66158110 | ID=Msa0515110-mRNA-1:cds;Parent=Msa0515110-mRNA-1 |
| chr3_4 | CDS | 66157654 | 66157968 | 66157654 | ID=Msa0515110-mRNA-1:cds;Parent=Msa0515110-mRNA-1 |
| chr3_4 | CDS | 66156375 | 66156647 | 66156375 | ID=Msa0515110-mRNA-1:cds;Parent=Msa0515110-mRNA-1 |
| chr3_4 | three_prime_UTR | 66156132 | 66156374 | 66156132 | ID=Msa0515110-mRNA-1:three_prime_utr;Parent=Msa0515110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
