AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423230 MtrunA17_Chr3g0124021 99.666 299 1 0 1 299 1 299 0.0 603
Msa0423230 MtrunA17_Chr3g0115701 59.344 305 96 7 3 299 4 288 9.01e-108 315
Msa0423230 MtrunA17_Chr8g0382291 50.321 312 115 6 5 296 4 295 2.60e-89 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423230 AT4G39860.3 62.963 297 109 1 3 299 4 299 5.49e-127 364
Msa0423230 AT4G39860.4 62.963 297 109 1 3 299 4 299 5.49e-127 364
Msa0423230 AT4G39860.1 62.963 297 109 1 3 299 4 299 5.49e-127 364
Msa0423230 AT4G39860.2 62.626 297 109 2 3 299 4 298 2.72e-124 357
Msa0423230 AT1G78150.1 52.508 299 112 5 3 299 4 274 1.59e-90 271
Msa0423230 AT1G78150.2 52.508 299 112 5 3 299 4 274 1.59e-90 271
Msa0423230 AT1G35780.1 50.980 306 118 7 3 299 4 286 6.96e-87 262
Msa0423230 AT1G78150.3 47.866 328 112 6 3 299 4 303 3.24e-84 255
Msa0423230 AT2G22270.1 44.615 325 140 11 10 299 9 328 1.40e-69 219
Msa0423230 AT2G22270.2 45.423 284 116 10 51 299 10 289 2.99e-59 191
Msa0423230 AT1G35780.2 49.367 237 87 7 71 299 1 212 1.08e-58 187
Msa0423230 AT1G35780.4 49.367 237 87 7 71 299 1 212 1.08e-58 187
Msa0423230 AT1G35780.3 49.367 237 87 7 71 299 1 212 1.08e-58 187

Find 95 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGATGTCCTCAAATTTC+TGG 0.079733 3_2:-72976741 None:intergenic
TTAACAGGGTCTTTGATTTC+TGG 0.136628 3_2:-72977985 None:intergenic
CAGAAGTTTGCAGAGCTTTC+AGG 0.210481 3_2:+72977856 Msa0423230:CDS
GGGCAAAGTAATATCTTATT+TGG 0.218414 3_2:+72977793 Msa0423230:CDS
CTCTCAGCTTTGCCCTGCTC+AGG 0.267205 3_2:-72977927 None:intergenic
GAAATCAAAGACCCTGTTAA+AGG 0.278225 3_2:+72977988 Msa0423230:CDS
GGTATAGAGGTAGGCTTCTT+AGG 0.279404 3_2:-72976515 None:intergenic
CTCACTGGAAATGATATATT+TGG 0.293153 3_2:+72976632 Msa0423230:CDS
GGTTTGCGGGCACCTTTAAC+AGG 0.293722 3_2:-72978000 None:intergenic
TTCTTTGATGTCTTCTCAAC+AGG 0.305067 3_2:-72977823 None:intergenic
ATGGAACGCGGTACAATTTC+AGG 0.309840 3_2:-72976662 None:intergenic
TCCAGTGAGCTCCTTGGTCT+TGG 0.319341 3_2:-72976618 None:intergenic
GCATCTCAGCAAGCAATAAA+TGG 0.332847 3_2:+72976452 Msa0423230:intron
AATTCCGTGTGAACATTAGT+AGG 0.335907 3_2:+72978109 Msa0423230:three_prime_UTR
CTGAAAGCTCTGCAAACTTC+TGG 0.342314 3_2:-72977855 None:intergenic
CTTAGGACTAACACTTTCTT+CGG 0.378680 3_2:-72976498 None:intergenic
AACTAGCATACGCATATATC+AGG 0.379428 3_2:+72976298 Msa0423230:CDS
CATGGCAGCTGCACGAACTT+TGG 0.379756 3_2:+72976682 Msa0423230:CDS
ACCGATGTCCTCAAATTTCT+GGG 0.398231 3_2:-72976740 None:intergenic
ATGTTCAATTATCAGCATCT+AGG 0.418088 3_2:+72978138 Msa0423230:three_prime_UTR
TTCCTGTAATTGTAGCCTGC+TGG 0.421397 3_2:+72977769 Msa0423230:intron
TATTAACATGAAATCTCAAC+TGG 0.433636 3_2:+72978239 Msa0423230:three_prime_UTR
ACTTTCAGCAAGCCATGCTC+AGG 0.438294 3_2:+72976188 Msa0423230:intron
TGGGACTTTGCAAACTGACT+TGG 0.443269 3_2:+72976565 Msa0423230:CDS
TTCACACTCAAAACAACAAT+GGG 0.456072 3_2:+72975134 Msa0423230:exon
TCTCAGCTTTGCCCTGCTCA+GGG 0.467139 3_2:-72977926 None:intergenic
GAGCTTCTTCTTCAGTGAGC+TGG 0.469415 3_2:-72975301 None:intergenic
CTTTGCTACCTCAGGTATAG+AGG 0.474305 3_2:-72976528 None:intergenic
GTCCTCAAATTTCTGGGAAG+AGG 0.478841 3_2:-72976734 None:intergenic
TCACGCTGCTTTGCTACCTC+AGG 0.479040 3_2:-72976536 None:intergenic
GCAATGCTGCTGTCTCCACC+AGG 0.480965 3_2:-72978024 None:intergenic
ATCAGAAGGCTGACGAGAGC+GGG 0.481733 3_2:-72975252 None:intergenic
CTGACGAGAGCGGGTGGCGG+AGG 0.484128 3_2:-72975243 None:intergenic
GAATCAACAACAACGGGAGG+AGG 0.485353 3_2:-72975221 None:intergenic
CAAAGTTCGTGCAGCTGCCA+TGG 0.485787 3_2:-72976681 None:intergenic
CTTACTTAACAGTTAGAAGA+TGG 0.487759 3_2:+72978216 Msa0423230:three_prime_UTR
CGCGGTACAATTTCAGGAGG+AGG 0.490011 3_2:-72976656 None:intergenic
GCGGAGGAATCAACAACAAC+GGG 0.491550 3_2:-72975227 None:intergenic
CTGTAATTGTAGCCTGCTGG+TGG 0.494796 3_2:+72977772 Msa0423230:intron
TTCCATGGAGATGTTCCAGC+AGG 0.495508 3_2:+72977889 Msa0423230:CDS
GCAAAGCTGAGAGAAATAAC+TGG 0.502572 3_2:+72977937 Msa0423230:CDS
AATGCTGCTGTCTCCACCAG+GGG 0.506313 3_2:-72978022 None:intergenic
AACCTCTTCCCAGAAATTTG+AGG 0.507551 3_2:+72976732 Msa0423230:CDS
TGCACGAACTTTGGAATCAA+AGG 0.509149 3_2:+72976691 Msa0423230:CDS
AAGCTCAATCTCTCTCCAAA+AGG 0.514977 3_2:+72975318 Msa0423230:CDS
GCCAAGACCAAGGAGCTCAC+TGG 0.521289 3_2:+72976617 Msa0423230:CDS
AATGTTTAAATCAGATCAGA+TGG 0.524790 3_2:-72974992 None:intergenic
ATATTACTTTGCCCACCAGC+AGG 0.525761 3_2:-72977784 None:intergenic
AGGCTGACGAGAGCGGGTGG+CGG 0.529442 3_2:-72975246 None:intergenic
ATCATTTCCAGTGAGCTCCT+TGG 0.534478 3_2:-72976624 None:intergenic
TGAATGAATGAATGAATGAA+TGG 0.540632 3_2:-72975115 None:intergenic
TGAAATTGTACCGCGTTCCA+TGG 0.543593 3_2:+72976664 Msa0423230:CDS
TCAACAACAACGGGAGGAGG+AGG 0.546104 3_2:-72975218 None:intergenic
ATTCACACTCAAAACAACAA+TGG 0.547288 3_2:+72975133 Msa0423230:exon
ATCAAAGGAAAGCAAGGACA+TGG 0.548897 3_2:+72976706 Msa0423230:CDS
GTTTGCGGGCACCTTTAACA+GGG 0.549073 3_2:-72977999 None:intergenic
GAAGATTCTGCATCAGAAGC+CGG 0.549556 3_2:+72976260 Msa0423230:CDS
GCAAAGCAGCGTGAACTCAG+TGG 0.573236 3_2:+72976545 Msa0423230:CDS
TTGGTGTGTGTCTTTCTCAC+CGG 0.575218 3_2:-72975164 None:intergenic
ACACTTCCGATCTCCTCACT+TGG 0.577893 3_2:+72975186 Msa0423230:CDS
TTTGGAATCAAAGGAAAGCA+AGG 0.578160 3_2:+72976700 Msa0423230:CDS
TCCCAGAAATTTGAGGACAT+CGG 0.579400 3_2:+72976739 Msa0423230:CDS
ATCCTGCTGGAACATCTCCA+TGG 0.579980 3_2:-72977891 None:intergenic
GGCAGTGACATATTTGCTGA+TGG 0.581577 3_2:+72977958 Msa0423230:CDS
GCTACCTCAGGTATAGAGGT+AGG 0.582241 3_2:-72976524 None:intergenic
AAATATCATAATTTAGAGCA+AGG 0.582571 3_2:-72978046 None:intergenic
ATGAAAGAGATGAGTGGACA+TGG 0.583015 3_2:+72976218 Msa0423230:CDS
AGTGAGGAGATCGGAAGTGT+TGG 0.589898 3_2:-72975183 None:intergenic
ATTCCGTGTGAACATTAGTA+GGG 0.590764 3_2:+72978110 Msa0423230:three_prime_UTR
TTCCGATCTCCTCACTTGGT+CGG 0.594758 3_2:+72975190 Msa0423230:CDS
CAATGCTGCTGTCTCCACCA+GGG 0.594808 3_2:-72978023 None:intergenic
TTCCGACCAAGTGAGGAGAT+CGG 0.598387 3_2:-72975192 None:intergenic
CGTGCAGCTGCCATGGAACG+CGG 0.599947 3_2:-72976674 None:intergenic
AACAACAATGGGAAGCACTC+CGG 0.604363 3_2:+72975145 Msa0423230:exon
TATAAAATGAAAGAGATGAG+TGG 0.604599 3_2:+72976212 Msa0423230:CDS
CAAAGCAGCGTGAACTCAGT+GGG 0.607370 3_2:+72976546 Msa0423230:CDS
ACCTTGCTGATTCTATCAGA+AGG 0.610704 3_2:-72975266 None:intergenic
AGAAGGCTGACGAGAGCGGG+TGG 0.616356 3_2:-72975249 None:intergenic
AAGTGAAGGAACAACGTGGA+TGG 0.619054 3_2:-72975091 None:intergenic
TATCAGAAGGCTGACGAGAG+CGG 0.623249 3_2:-72975253 None:intergenic
GAGGAATCAACAACAACGGG+AGG 0.627908 3_2:-72975224 None:intergenic
GAGGAACTTCCGACCAAGTG+AGG 0.628730 3_2:-72975199 None:intergenic
ATGCTGCTGTCTCCACCAGG+GGG 0.629578 3_2:-72978021 None:intergenic
TTACCCTACTAATGTTCACA+CGG 0.631075 3_2:-72978113 None:intergenic
GCGGTACAATTTCAGGAGGA+GGG 0.631603 3_2:-72976655 None:intergenic
AATGAATGAATGGAAAGTGA+AGG 0.637482 3_2:-72975105 None:intergenic
GCCTTCTGATAGAATCAGCA+AGG 0.638816 3_2:+72975265 Msa0423230:CDS
TGTAATTGTAGCCTGCTGGT+GGG 0.644942 3_2:+72977773 Msa0423230:intron
CTTTCAGCAAGCCATGCTCA+GGG 0.644956 3_2:+72976189 Msa0423230:intron
AATATCAAATGCCAAGACCA+AGG 0.645109 3_2:+72976607 Msa0423230:CDS
GGCGGAGGAATCAACAACAA+CGG 0.655351 3_2:-72975228 None:intergenic
TCAAAGGAAAGCAAGGACAT+GGG 0.665351 3_2:+72976707 Msa0423230:CDS
GAAGCCTACCTCTATACCTG+AGG 0.688793 3_2:+72976520 Msa0423230:CDS
GAACGCGGTACAATTTCAGG+AGG 0.704954 3_2:-72976659 None:intergenic
TGGAAAGTGAAGGAACAACG+TGG 0.826765 3_2:-72975095 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTCAAATTGAAAATAAA+CGG - chr3_2:72975572-72975591 None:intergenic 15.0%
!!! TCAAAATCTACTTTTAAATT+TGG + chr3_2:72975688-72975707 Msa0423230:intron 15.0%
!!! TATAATATTTTCTTATGACA+TGG + chr3_2:72976864-72976883 Msa0423230:intron 15.0%
!!! ACTCTTCATTTTTATTTTTT+TGG + chr3_2:72977032-72977051 Msa0423230:intron 15.0%
!!! CTCTTCATTTTTATTTTTTT+GGG + chr3_2:72977033-72977052 Msa0423230:intron 15.0%
!!! TCTTCATTTTTATTTTTTTG+GGG + chr3_2:72977034-72977053 Msa0423230:intron 15.0%
!!! TAAAATTTAAGTCTGTTTTT+GGG + chr3_2:72977342-72977361 Msa0423230:intron 15.0%
!!! ATCTGTTTCTTAATTTGAAA+TGG + chr3_2:72975459-72975478 Msa0423230:intron 20.0%
!!! AAAAAAATCACTTTTTTGTG+TGG - chr3_2:72975913-72975932 None:intergenic 20.0%
!!! ATTAGCTTTTTTCAAATACA+AGG - chr3_2:72975975-72975994 None:intergenic 20.0%
!! TCATATTTAAGTGTTTGTTT+AGG - chr3_2:72976062-72976081 None:intergenic 20.0%
!!! AGAAAAAAATCTGAAACAAA+CGG + chr3_2:72976099-72976118 Msa0423230:intron 20.0%
!!! ATTCACAATTTTCATAACAA+AGG - chr3_2:72976127-72976146 None:intergenic 20.0%
!! TCAATTTGATGTTTGAAAAA+TGG - chr3_2:72976375-72976394 None:intergenic 20.0%
!!! ATATTTAAATTTTGCATTCC+AGG - chr3_2:72977006-72977025 None:intergenic 20.0%
!!! GTAAAATTTAAGTCTGTTTT+TGG + chr3_2:72977341-72977360 Msa0423230:intron 20.0%
!! AAACACATAAAAGAAACAAA+TGG - chr3_2:72977579-72977598 None:intergenic 20.0%
!!! AAATATCATAATTTAGAGCA+AGG - chr3_2:72978049-72978068 None:intergenic 20.0%
!! ATAAAAATCCTACATCAAAA+GGG - chr3_2:72978089-72978108 None:intergenic 20.0%
!! TATAAAAATCCTACATCAAA+AGG - chr3_2:72978090-72978109 None:intergenic 20.0%
! AATGTTTAAATCAGATCAGA+TGG - chr3_2:72974995-72975014 None:intergenic 25.0%
! TGAATGAATGAATGAATGAA+TGG - chr3_2:72975118-72975137 None:intergenic 25.0%
! AATTAAGAAACAGATCTATG+CGG - chr3_2:72975454-72975473 None:intergenic 25.0%
!!! GAATTAAAGAAAGTGTTTTC+AGG + chr3_2:72975541-72975560 Msa0423230:intron 25.0%
! TTTAGTTGAATCAAGATTAG+TGG + chr3_2:72975616-72975635 Msa0423230:intron 25.0%
!!! CTCTAAAATGAAAAGCTATA+AGG - chr3_2:72975998-72976017 None:intergenic 25.0%
!! GAAAAAAATCTGAAACAAAC+GGG + chr3_2:72976100-72976119 Msa0423230:intron 25.0%
!! AAAAAAATCTGAAACAAACG+GGG + chr3_2:72976101-72976120 Msa0423230:intron 25.0%
! TATAAAATGAAAGAGATGAG+TGG + chr3_2:72976212-72976231 Msa0423230:CDS 25.0%
!! AGTTTTTGAATTAACAGAAC+CGG - chr3_2:72976282-72976301 None:intergenic 25.0%
! GCATATATCAGGTTTATATT+TGG + chr3_2:72976309-72976328 Msa0423230:intron 25.0%
! ATGTTTGAAAAATGGCTATA+AGG - chr3_2:72976367-72976386 None:intergenic 25.0%
! TTCAAACATCAAATTGAACT+CGG + chr3_2:72976378-72976397 Msa0423230:intron 25.0%
!!! TCATTTTTATTTTTTTGGGG+TGG + chr3_2:72977037-72977056 Msa0423230:intron 25.0%
!!! CATTTTTATTTTTTTGGGGT+GGG + chr3_2:72977038-72977057 Msa0423230:intron 25.0%
!!! ATTTTTATTTTTTTGGGGTG+GGG + chr3_2:72977039-72977058 Msa0423230:intron 25.0%
!!! TGTCTTTGAAATTTCTATGA+TGG + chr3_2:72977297-72977316 Msa0423230:intron 25.0%
! AAAGAAACAAATGGACAAAT+GGG - chr3_2:72977570-72977589 None:intergenic 25.0%
! AAAAGAAACAAATGGACAAA+TGG - chr3_2:72977571-72977590 None:intergenic 25.0%
!! AAAACTATTTTCTCACAAAC+TGG - chr3_2:72977684-72977703 None:intergenic 25.0%
! AACTCGTAAGTCATAAATAT+GGG - chr3_2:72977726-72977745 None:intergenic 25.0%
! TAACTCGTAAGTCATAAATA+TGG - chr3_2:72977727-72977746 None:intergenic 25.0%
! TAAAAATCCTACATCAAAAG+GGG - chr3_2:72978088-72978107 None:intergenic 25.0%
! TATTAACATGAAATCTCAAC+TGG + chr3_2:72978239-72978258 Msa0423230:three_prime_UTR 25.0%
AATGAATGAATGGAAAGTGA+AGG - chr3_2:72975108-72975127 None:intergenic 30.0%
ATTCACACTCAAAACAACAA+TGG + chr3_2:72975133-72975152 Msa0423230:exon 30.0%
TTCACACTCAAAACAACAAT+GGG + chr3_2:72975134-72975153 Msa0423230:exon 30.0%
!! AAATGAAAGTACGTACCTTT+TGG - chr3_2:72975336-72975355 None:intergenic 30.0%
GTAAAAGATCTGATCTGAAA+AGG - chr3_2:72975370-72975389 None:intergenic 30.0%
!!! AGCTTTTTTCAAATACAAGG+AGG - chr3_2:72975972-72975991 None:intergenic 30.0%
GAAAATTGTGAATCTAAGCT+AGG + chr3_2:72976134-72976153 Msa0423230:intron 30.0%
CTCACTGGAAATGATATATT+TGG + chr3_2:72976632-72976651 Msa0423230:CDS 30.0%
TTCTAATGTAAGTGTCTTCT+AGG + chr3_2:72976769-72976788 Msa0423230:intron 30.0%
TTATCGATATGAATTGAGCT+AGG + chr3_2:72976887-72976906 Msa0423230:intron 30.0%
AAGATTCAGGTAGTTGTTAA+TGG - chr3_2:72976932-72976951 None:intergenic 30.0%
!!! TTTTTATTTTTTTGGGGTGG+GGG + chr3_2:72977040-72977059 Msa0423230:intron 30.0%
!! TGGCTTCAATTTAATTTGAC+AGG - chr3_2:72977232-72977251 None:intergenic 30.0%
AAGACAATGTAACAAACTGA+TGG - chr3_2:72977283-72977302 None:intergenic 30.0%
TAAGATGTGTGTGTTATGTT+TGG + chr3_2:72977411-72977430 Msa0423230:intron 30.0%
! ATTTGGCAAAAGCTACATTT+TGG - chr3_2:72977489-72977508 None:intergenic 30.0%
ACTCGTAAGTCATAAATATG+GGG - chr3_2:72977725-72977744 None:intergenic 30.0%
GGGCAAAGTAATATCTTATT+TGG + chr3_2:72977793-72977812 Msa0423230:CDS 30.0%
! TCAGGCAATAATATTTTCCA+TGG + chr3_2:72977874-72977893 Msa0423230:CDS 30.0%
ATGTTCAATTATCAGCATCT+AGG + chr3_2:72978138-72978157 Msa0423230:three_prime_UTR 30.0%
CTTACTTAACAGTTAGAAGA+TGG + chr3_2:72978216-72978235 Msa0423230:three_prime_UTR 30.0%
GATCGAAGAACGATCAAAAA+AGG - chr3_2:72975406-72975425 None:intergenic 35.0%
ATGCAATCTGCAATCTTATG+TGG + chr3_2:72975593-72975612 Msa0423230:intron 35.0%
ACACATTCACGTAGTTAACA+TGG - chr3_2:72975743-72975762 None:intergenic 35.0%
! TTCATTTTATACCCTGAGCA+TGG - chr3_2:72976203-72976222 None:intergenic 35.0%
! GAGTGGACATGGTATATTTT+CGG + chr3_2:72976229-72976248 Msa0423230:CDS 35.0%
! CATGGTATATTTTCGGACAA+TGG + chr3_2:72976236-72976255 Msa0423230:CDS 35.0%
AACTAGCATACGCATATATC+AGG + chr3_2:72976298-72976317 Msa0423230:CDS 35.0%
CTTAGGACTAACACTTTCTT+CGG - chr3_2:72976501-72976520 None:intergenic 35.0%
AATATCAAATGCCAAGACCA+AGG + chr3_2:72976607-72976626 Msa0423230:CDS 35.0%
! TTTGGAATCAAAGGAAAGCA+AGG + chr3_2:72976700-72976719 Msa0423230:CDS 35.0%
AACAACTACCTGAATCTTAG+TGG + chr3_2:72976934-72976953 Msa0423230:intron 35.0%
!!! TAGGGGGTAAGATTTTAGTT+TGG + chr3_2:72977064-72977083 Msa0423230:intron 35.0%
!!! AGGGGGTAAGATTTTAGTTT+GGG + chr3_2:72977065-72977084 Msa0423230:intron 35.0%
!!! TAAGATTTTAGTTTGGGGGT+TGG + chr3_2:72977071-72977090 Msa0423230:intron 35.0%
!!! AAGATTTTAGTTTGGGGGTT+GGG + chr3_2:72977072-72977091 Msa0423230:intron 35.0%
!!! TTAAGTCTGTTTTTGGGTGT+TGG + chr3_2:72977348-72977367 Msa0423230:intron 35.0%
!!! TAAGTCTGTTTTTGGGTGTT+GGG + chr3_2:72977349-72977368 Msa0423230:intron 35.0%
GTGTGTTATGTTTGGATTGA+CGG + chr3_2:72977419-72977438 Msa0423230:intron 35.0%
! TGTAGCTTTTGCCAAATTCT+TGG + chr3_2:72977492-72977511 Msa0423230:intron 35.0%
GAGATTGACGAAATCACAAT+TGG - chr3_2:72977521-72977540 None:intergenic 35.0%
ATAAGCAGTAGGTACTTTGT+AGG - chr3_2:72977628-72977647 None:intergenic 35.0%
TGTTGAGCTAAATAAGCAGT+AGG - chr3_2:72977639-72977658 None:intergenic 35.0%
! CTATTTTCTCACAAACTGGA+CGG - chr3_2:72977680-72977699 None:intergenic 35.0%
CTACAATTACAGGAAAAGGA+AGG - chr3_2:72977764-72977783 None:intergenic 35.0%
TTCTTTGATGTCTTCTCAAC+AGG - chr3_2:72977826-72977845 None:intergenic 35.0%
! TTAACAGGGTCTTTGATTTC+TGG - chr3_2:72977988-72978007 None:intergenic 35.0%
GAAATCAAAGACCCTGTTAA+AGG + chr3_2:72977988-72978007 Msa0423230:CDS 35.0%
AATTCCGTGTGAACATTAGT+AGG + chr3_2:72978109-72978128 Msa0423230:three_prime_UTR 35.0%
ATTCCGTGTGAACATTAGTA+GGG + chr3_2:72978110-72978129 Msa0423230:three_prime_UTR 35.0%
TTACCCTACTAATGTTCACA+CGG - chr3_2:72978116-72978135 None:intergenic 35.0%
!! ACCTTGCTGATTCTATCAGA+AGG - chr3_2:72975269-72975288 None:intergenic 40.0%
AAGCTCAATCTCTCTCCAAA+AGG + chr3_2:72975318-72975337 Msa0423230:CDS 40.0%
ATCGTTGGATTGAGATCAGA+CGG - chr3_2:72975715-72975734 None:intergenic 40.0%
GTTAACATGGATGTGATCGT+TGG - chr3_2:72975730-72975749 None:intergenic 40.0%
TGTGAATCTAAGCTAGGAGA+TGG + chr3_2:72976140-72976159 Msa0423230:intron 40.0%
ATGAAAGAGATGAGTGGACA+TGG + chr3_2:72976218-72976237 Msa0423230:CDS 40.0%
TCAAACTGGACTCAAGATCA+AGG - chr3_2:72976342-72976361 None:intergenic 40.0%
ATGGCTATAAGGTCTCAAAC+TGG - chr3_2:72976356-72976375 None:intergenic 40.0%
GCATCTCAGCAAGCAATAAA+TGG + chr3_2:72976452-72976471 Msa0423230:intron 40.0%
!! TGCACGAACTTTGGAATCAA+AGG + chr3_2:72976691-72976710 Msa0423230:CDS 40.0%
ATCAAAGGAAAGCAAGGACA+TGG + chr3_2:72976706-72976725 Msa0423230:CDS 40.0%
TCAAAGGAAAGCAAGGACAT+GGG + chr3_2:72976707-72976726 Msa0423230:CDS 40.0%
AACCTCTTCCCAGAAATTTG+AGG + chr3_2:72976732-72976751 Msa0423230:CDS 40.0%
TCCCAGAAATTTGAGGACAT+CGG + chr3_2:72976739-72976758 Msa0423230:CDS 40.0%
ACCGATGTCCTCAAATTTCT+GGG - chr3_2:72976743-72976762 None:intergenic 40.0%
ATTCATCGCCACTAAGATTC+AGG - chr3_2:72976945-72976964 None:intergenic 40.0%
! GAAAGCATAAGGTAAACTGG+TGG - chr3_2:72976984-72977003 None:intergenic 40.0%
! CAGGAAAGCATAAGGTAAAC+TGG - chr3_2:72976987-72977006 None:intergenic 40.0%
CAGTTTACCTTATGCTTTCC+TGG + chr3_2:72976985-72977004 Msa0423230:intron 40.0%
! TTGCATTCCAGGAAAGCATA+AGG - chr3_2:72976995-72977014 None:intergenic 40.0%
!!! GGGGGTAAGATTTTAGTTTG+GGG + chr3_2:72977066-72977085 Msa0423230:intron 40.0%
!!! GGGGTAAGATTTTAGTTTGG+GGG + chr3_2:72977067-72977086 Msa0423230:intron 40.0%
!!! AGATTTTAGTTTGGGGGTTG+GGG + chr3_2:72977073-72977092 Msa0423230:intron 40.0%
TAATACTGTTGCAGCACATG+AGG + chr3_2:72977145-72977164 Msa0423230:intron 40.0%
GTGTAAGATGTCCACAAGAT+TGG - chr3_2:72977172-72977191 None:intergenic 40.0%
! TAACAAACTGATGGACCTTC+CGG - chr3_2:72977274-72977293 None:intergenic 40.0%
!!! AAGTCTGTTTTTGGGTGTTG+GGG + chr3_2:72977350-72977369 Msa0423230:intron 40.0%
CGGTGAGTTTGGTAAAATCA+CGG + chr3_2:72977439-72977458 Msa0423230:intron 40.0%
! AGCTTTTGCCAAATTCTTGG+TGG + chr3_2:72977495-72977514 Msa0423230:intron 40.0%
ACAATTGGCCACCAAGAATT+TGG - chr3_2:72977506-72977525 None:intergenic 40.0%
AATGGGACTGAGAACTTGAT+TGG - chr3_2:72977553-72977572 None:intergenic 40.0%
CAGGCTACAATTACAGGAAA+AGG - chr3_2:72977768-72977787 None:intergenic 40.0%
GCAAAGCTGAGAGAAATAAC+TGG + chr3_2:72977937-72977956 Msa0423230:CDS 40.0%
! AAGCTTACCCCTTTTGATGT+AGG + chr3_2:72978078-72978097 Msa0423230:three_prime_UTR 40.0%
AAGTGAAGGAACAACGTGGA+TGG - chr3_2:72975094-72975113 None:intergenic 45.0%
TGGAAAGTGAAGGAACAACG+TGG - chr3_2:72975098-72975117 None:intergenic 45.0%
!! AACAACAATGGGAAGCACTC+CGG + chr3_2:72975145-72975164 Msa0423230:exon 45.0%
TTGGTGTGTGTCTTTCTCAC+CGG - chr3_2:72975167-72975186 None:intergenic 45.0%
GCCTTCTGATAGAATCAGCA+AGG + chr3_2:72975265-72975284 Msa0423230:CDS 45.0%
GAAGATTCTGCATCAGAAGC+CGG + chr3_2:72976260-72976279 Msa0423230:CDS 45.0%
GGTATAGAGGTAGGCTTCTT+AGG - chr3_2:72976518-72976537 None:intergenic 45.0%
CTTTGCTACCTCAGGTATAG+AGG - chr3_2:72976531-72976550 None:intergenic 45.0%
TGGGACTTTGCAAACTGACT+TGG + chr3_2:72976565-72976584 Msa0423230:CDS 45.0%
ATCATTTCCAGTGAGCTCCT+TGG - chr3_2:72976627-72976646 None:intergenic 45.0%
ATGGAACGCGGTACAATTTC+AGG - chr3_2:72976665-72976684 None:intergenic 45.0%
TGAAATTGTACCGCGTTCCA+TGG + chr3_2:72976664-72976683 Msa0423230:CDS 45.0%
! GTCCTCAAATTTCTGGGAAG+AGG - chr3_2:72976737-72976756 None:intergenic 45.0%
CACCGATGTCCTCAAATTTC+TGG - chr3_2:72976744-72976763 None:intergenic 45.0%
! GTAAACTGGTGGATGGTCAA+GGG - chr3_2:72976973-72976992 None:intergenic 45.0%
GCATAAGGTAAACTGGTGGA+TGG - chr3_2:72976980-72976999 None:intergenic 45.0%
!!! ATTTTTTTGGGGTGGGGGTT+AGG + chr3_2:72977045-72977064 Msa0423230:intron 45.0%
!!! TTTTTTTGGGGTGGGGGTTA+GGG + chr3_2:72977046-72977065 Msa0423230:intron 45.0%
!!! GATTTTAGTTTGGGGGTTGG+GGG + chr3_2:72977074-72977093 Msa0423230:intron 45.0%
!!! ATTTTAGTTTGGGGGTTGGG+GGG + chr3_2:72977075-72977094 Msa0423230:intron 45.0%
GACAGGCACATGTTAAGAGA+AGG - chr3_2:72977215-72977234 None:intergenic 45.0%
GATGCAATGCATGTGCAGTT+TGG - chr3_2:72977252-72977271 None:intergenic 45.0%
AACTGCACATGCATTGCATC+CGG + chr3_2:72977252-72977271 Msa0423230:intron 45.0%
!!! AGTCTGTTTTTGGGTGTTGG+GGG + chr3_2:72977351-72977370 Msa0423230:intron 45.0%
GTTTGGATTGACGGTGAGTT+TGG + chr3_2:72977428-72977447 Msa0423230:intron 45.0%
CTCACAAACTGGACGGTTTA+AGG - chr3_2:72977673-72977692 None:intergenic 45.0%
CAGGAAAAGGAAGGTTAACC+TGG - chr3_2:72977755-72977774 None:intergenic 45.0%
TTCCTGTAATTGTAGCCTGC+TGG + chr3_2:72977769-72977788 Msa0423230:intron 45.0%
TGTAATTGTAGCCTGCTGGT+GGG + chr3_2:72977773-72977792 Msa0423230:intron 45.0%
ATATTACTTTGCCCACCAGC+AGG - chr3_2:72977787-72977806 None:intergenic 45.0%
CTGAAAGCTCTGCAAACTTC+TGG - chr3_2:72977858-72977877 None:intergenic 45.0%
CAGAAGTTTGCAGAGCTTTC+AGG + chr3_2:72977856-72977875 Msa0423230:CDS 45.0%
!! GATTTTTCAGCTGATCCTGC+TGG - chr3_2:72977907-72977926 None:intergenic 45.0%
AGCTGAAAAATCCCTGAGCA+GGG + chr3_2:72977915-72977934 Msa0423230:CDS 45.0%
! GGCAGTGACATATTTGCTGA+TGG + chr3_2:72977958-72977977 Msa0423230:CDS 45.0%
! AGTGAGGAGATCGGAAGTGT+TGG - chr3_2:72975186-72975205 None:intergenic 50.0%
ACACTTCCGATCTCCTCACT+TGG + chr3_2:72975186-72975205 Msa0423230:CDS 50.0%
TTCCGATCTCCTCACTTGGT+CGG + chr3_2:72975190-72975209 Msa0423230:CDS 50.0%
TTCCGACCAAGTGAGGAGAT+CGG - chr3_2:72975195-72975214 None:intergenic 50.0%
GAATCAACAACAACGGGAGG+AGG - chr3_2:72975224-72975243 None:intergenic 50.0%
GAGGAATCAACAACAACGGG+AGG - chr3_2:72975227-72975246 None:intergenic 50.0%
GCGGAGGAATCAACAACAAC+GGG - chr3_2:72975230-72975249 None:intergenic 50.0%
GGCGGAGGAATCAACAACAA+CGG - chr3_2:72975231-72975250 None:intergenic 50.0%
TATCAGAAGGCTGACGAGAG+CGG - chr3_2:72975256-72975275 None:intergenic 50.0%
GAGCTTCTTCTTCAGTGAGC+TGG - chr3_2:72975304-72975323 None:intergenic 50.0%
ACTTTCAGCAAGCCATGCTC+AGG + chr3_2:72976188-72976207 Msa0423230:intron 50.0%
CTTTCAGCAAGCCATGCTCA+GGG + chr3_2:72976189-72976208 Msa0423230:intron 50.0%
GAAGCCTACCTCTATACCTG+AGG + chr3_2:72976520-72976539 Msa0423230:CDS 50.0%
GCTACCTCAGGTATAGAGGT+AGG - chr3_2:72976527-72976546 None:intergenic 50.0%
CAAAGCAGCGTGAACTCAGT+GGG + chr3_2:72976546-72976565 Msa0423230:CDS 50.0%
GCGGTACAATTTCAGGAGGA+GGG - chr3_2:72976658-72976677 None:intergenic 50.0%
GAACGCGGTACAATTTCAGG+AGG - chr3_2:72976662-72976681 None:intergenic 50.0%
! GGTAAACTGGTGGATGGTCA+AGG - chr3_2:72976974-72976993 None:intergenic 50.0%
!!! TTTTTTGGGGTGGGGGTTAG+GGG + chr3_2:72977047-72977066 Msa0423230:intron 50.0%
GCACATGAGGACCAATCTTG+TGG + chr3_2:72977158-72977177 Msa0423230:intron 50.0%
!!! TGTTTTTGGGTGTTGGGGGT+GGG + chr3_2:72977355-72977374 Msa0423230:intron 50.0%
GACTTACGAGTTACGACTCC+AGG + chr3_2:72977734-72977753 Msa0423230:intron 50.0%
CACCAGCAGGCTACAATTAC+AGG - chr3_2:72977774-72977793 None:intergenic 50.0%
CTGTAATTGTAGCCTGCTGG+TGG + chr3_2:72977772-72977791 Msa0423230:intron 50.0%
TTCCATGGAGATGTTCCAGC+AGG + chr3_2:72977889-72977908 Msa0423230:CDS 50.0%
ATCCTGCTGGAACATCTCCA+TGG - chr3_2:72977894-72977913 None:intergenic 50.0%
CAGCTGAAAAATCCCTGAGC+AGG + chr3_2:72977914-72977933 Msa0423230:CDS 50.0%
GTTTGCGGGCACCTTTAACA+GGG - chr3_2:72978002-72978021 None:intergenic 50.0%
GAGGAACTTCCGACCAAGTG+AGG - chr3_2:72975202-72975221 None:intergenic 55.0%
TCAACAACAACGGGAGGAGG+AGG - chr3_2:72975221-72975240 None:intergenic 55.0%
ATCAGAAGGCTGACGAGAGC+GGG - chr3_2:72975255-72975274 None:intergenic 55.0%
! TCACGCTGCTTTGCTACCTC+AGG - chr3_2:72976539-72976558 None:intergenic 55.0%
GCAAAGCAGCGTGAACTCAG+TGG + chr3_2:72976545-72976564 Msa0423230:CDS 55.0%
TCCAGTGAGCTCCTTGGTCT+TGG - chr3_2:72976621-72976640 None:intergenic 55.0%
CGCGGTACAATTTCAGGAGG+AGG - chr3_2:72976659-72976678 None:intergenic 55.0%
CAAAGTTCGTGCAGCTGCCA+TGG - chr3_2:72976684-72976703 None:intergenic 55.0%
CATGGCAGCTGCACGAACTT+TGG + chr3_2:72976682-72976701 Msa0423230:CDS 55.0%
!!! TTTTTGGGGTGGGGGTTAGG+GGG + chr3_2:72977048-72977067 Msa0423230:intron 55.0%
GCACATGCATTGCATCCGGA+AGG + chr3_2:72977256-72977275 Msa0423230:intron 55.0%
!!! CTGTTTTTGGGTGTTGGGGG+TGG + chr3_2:72977354-72977373 Msa0423230:intron 55.0%
!!! GTTTTTGGGTGTTGGGGGTG+GGG + chr3_2:72977356-72977375 Msa0423230:intron 55.0%
TCTCAGCTTTGCCCTGCTCA+GGG - chr3_2:72977929-72977948 None:intergenic 55.0%
GGTTTGCGGGCACCTTTAAC+AGG - chr3_2:72978003-72978022 None:intergenic 55.0%
AATGCTGCTGTCTCCACCAG+GGG - chr3_2:72978025-72978044 None:intergenic 55.0%
CAATGCTGCTGTCTCCACCA+GGG - chr3_2:72978026-72978045 None:intergenic 55.0%
GCCAAGACCAAGGAGCTCAC+TGG + chr3_2:72976617-72976636 Msa0423230:CDS 60.0%
CTCTCAGCTTTGCCCTGCTC+AGG - chr3_2:72977930-72977949 None:intergenic 60.0%
TGTCTCCACCAGGGGGTTTG+CGG - chr3_2:72978017-72978036 None:intergenic 60.0%
ATGCTGCTGTCTCCACCAGG+GGG - chr3_2:72978024-72978043 None:intergenic 60.0%
GCAATGCTGCTGTCTCCACC+AGG - chr3_2:72978027-72978046 None:intergenic 60.0%
AGAAGGCTGACGAGAGCGGG+TGG - chr3_2:72975252-72975271 None:intergenic 65.0%
CGTGCAGCTGCCATGGAACG+CGG - chr3_2:72976677-72976696 None:intergenic 65.0%
!! AAAGGTGCCCGCAAACCCCC+TGG + chr3_2:72978006-72978025 Msa0423230:CDS 65.0%
GTCTCCACCAGGGGGTTTGC+GGG - chr3_2:72978016-72978035 None:intergenic 65.0%
AGGCTGACGAGAGCGGGTGG+CGG - chr3_2:72975249-72975268 None:intergenic 70.0%
! CTGACGAGAGCGGGTGGCGG+AGG - chr3_2:72975246-72975265 None:intergenic 75.0%
GGTGCCCGCAAACCCCCTGG+TGG + chr3_2:72978009-72978028 Msa0423230:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 72974944 72978299 72974944 ID=Msa0423230;Name=Msa0423230
chr3_2 mRNA 72974944 72978299 72974944 ID=Msa0423230-mRNA-1;Parent=Msa0423230;Name=Msa0423230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=208|1|1|1|1|1|4|243|299
chr3_2 exon 72974944 72975339 72974944 ID=Msa0423230-mRNA-1:exon:18070;Parent=Msa0423230-mRNA-1
chr3_2 exon 72976196 72976319 72976196 ID=Msa0423230-mRNA-1:exon:18071;Parent=Msa0423230-mRNA-1
chr3_2 exon 72976461 72976775 72976461 ID=Msa0423230-mRNA-1:exon:18072;Parent=Msa0423230-mRNA-1
chr3_2 exon 72977784 72978299 72977784 ID=Msa0423230-mRNA-1:exon:18073;Parent=Msa0423230-mRNA-1
chr3_2 five_prime_UTR 72974944 72975151 72974944 ID=Msa0423230-mRNA-1:five_prime_utr;Parent=Msa0423230-mRNA-1
chr3_2 CDS 72975152 72975339 72975152 ID=Msa0423230-mRNA-1:cds;Parent=Msa0423230-mRNA-1
chr3_2 CDS 72976196 72976319 72976196 ID=Msa0423230-mRNA-1:cds;Parent=Msa0423230-mRNA-1
chr3_2 CDS 72976461 72976775 72976461 ID=Msa0423230-mRNA-1:cds;Parent=Msa0423230-mRNA-1
chr3_2 CDS 72977784 72978056 72977784 ID=Msa0423230-mRNA-1:cds;Parent=Msa0423230-mRNA-1
chr3_2 three_prime_UTR 72978057 72978299 72978057 ID=Msa0423230-mRNA-1:three_prime_utr;Parent=Msa0423230-mRNA-1
Gene Sequence

>Msa0423230

ATGGGAAGCACTCCGGTGAGAAAGACACACACCAACACTTCCGATCTCCTCACTTGGTCGGAAGTTCCTCCTCCTCCCGTTGTTGTTGATTCCTCCGCCACCCGCTCTCGTCAGCCTTCTGATAGAATCAGCAAGGTTCTCAATAGTGACCAGCTCACTGAAGAAGAAGCTCAATCTCTCTCCAAAAGCAAGCCATGCTCAGGGTATAAAATGAAAGAGATGAGTGGACATGGTATATTTTCGGACAATGGTGAAGATTCTGCATCAGAAGCCGGTTCTGTTAATTCAAAAACTAGCATACGCATATATCAGCAAGCAATAAATGGAGTTAGTCAGATATCATTCAGCACCGAAGAAAGTGTTAGTCCTAAGAAGCCTACCTCTATACCTGAGGTAGCAAAGCAGCGTGAACTCAGTGGGACTTTGCAAACTGACTTGGACGCAAAGACTCAGAAGCAAATATCAAATGCCAAGACCAAGGAGCTCACTGGAAATGATATATTTGGCCCTCCTCCTGAAATTGTACCGCGTTCCATGGCAGCTGCACGAACTTTGGAATCAAAGGAAAGCAAGGACATGGGAGAACCTCTTCCCAGAAATTTGAGGACATCGGTGAAAGTTTCTAATCCTGCTGGTGGGCAAAGTAATATCTTATTTGGCGACGCACCTGTTGAGAAGACATCAAAGAAGATACATGACCAGAAGTTTGCAGAGCTTTCAGGCAATAATATTTTCCATGGAGATGTTCCAGCAGGATCAGCTGAAAAATCCCTGAGCAGGGCAAAGCTGAGAGAAATAACTGGCAGTGACATATTTGCTGATGGAAAACCAGAAATCAAAGACCCTGTTAAAGGTGCCCGCAAACCCCCTGGTGGAGACAGCAGCATTGCCTTGCTCTAA

Protein sequence

>Msa0423230

MGSTPVRKTHTNTSDLLTWSEVPPPPVVVDSSATRSRQPSDRISKVLNSDQLTEEEAQSLSKSKPCSGYKMKEMSGHGIFSDNGEDSASEAGSVNSKTSIRIYQQAINGVSQISFSTEESVSPKKPTSIPEVAKQRELSGTLQTDLDAKTQKQISNAKTKELTGNDIFGPPPEIVPRSMAAARTLESKESKDMGEPLPRNLRTSVKVSNPAGGQSNILFGDAPVEKTSKKIHDQKFAELSGNNIFHGDVPAGSAEKSLSRAKLREITGSDIFADGKPEIKDPVKGARKPPGGDSSIALL*