AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383660 MtrunA17_Chr3g0140191 98.998 998 6 1 1 994 1 998 0.0 2033
Msa0383660 MtrunA17_Chr1g0211851 57.261 971 384 8 25 994 13 953 0.0 1130
Msa0383660 MtrunA17_Chr1g0168251 38.944 1004 543 15 37 993 53 1033 0.0 702
Msa0383660 MtrunA17_Chr1g0186391 38.338 999 560 15 37 993 31 1015 0.0 682
Msa0383660 MtrunA17_Chr6g0467051 37.190 968 567 11 58 993 188 1146 0.0 663
Msa0383660 MtrunA17_Chr8g0353581 31.136 986 583 18 36 992 181 1099 2.29e-135 435
Msa0383660 MtrunA17_Chr1g0211771 50.000 134 67 0 184 317 1 134 5.79e-43 152
Msa0383660 MtrunA17_Chr1g0211761 56.757 74 32 0 331 404 1 74 6.07e-21 89.4
Msa0383660 MtrunA17_Chr1g0211751 55.738 61 27 0 471 531 3 63 2.45e-15 71.6
Msa0383660 MtrunA17_Chr1g0211741 58.491 53 22 0 585 637 2 54 5.91e-15 70.1
Msa0383660 MtrunA17_Chr1g0211731 47.458 59 31 0 657 715 6 64 2.79e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383660 AT2G25800.1 71.457 995 272 10 3 994 2 987 0.0 1447
Msa0383660 AT2G20010.2 58.628 962 382 10 37 994 2 951 0.0 1158
Msa0383660 AT2G20010.1 60.714 840 320 7 158 994 1 833 0.0 1076
Msa0383660 AT2G33420.1 39.771 1046 559 18 11 993 1 1038 0.0 766
Msa0383660 AT1G04470.1 38.824 1020 552 17 38 993 23 1034 0.0 719
Msa0383660 AT5G06970.1 33.830 872 512 15 153 992 260 1098 1.70e-146 465
Msa0383660 AT4G11670.4 26.808 899 557 21 150 991 227 1081 2.26e-88 307
Msa0383660 AT4G11670.1 26.357 903 564 21 146 991 218 1076 1.10e-85 300
Msa0383660 AT4G11670.3 26.327 923 563 23 150 991 227 1113 2.97e-83 293
Msa0383660 AT4G11670.2 25.824 941 557 23 150 991 227 1125 2.67e-81 288

Find 298 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTGTTAAAGTTTCTT+AGG 0.168547 3_1:-86659157 None:intergenic
CAACATTGAGAACCAGTTAT+TGG 0.181600 3_1:+86659172 Msa0383660:three_prime_UTR
TTCTACATTGACTTCGATAT+TGG 0.198334 3_1:+86656406 Msa0383660:CDS
CAATGTAGAACTCAAAATTT+TGG 0.201505 3_1:-86656393 None:intergenic
GGCTCAAAATTTCAAGGCTT+TGG 0.212670 3_1:+86658293 Msa0383660:CDS
AAAACACGTAATAATGTATT+TGG 0.217025 3_1:-86659079 None:intergenic
ATGGAGGGCATTGTCTCTTT+AGG 0.233555 3_1:+86656491 Msa0383660:CDS
ACAAATGGGGATAGCTCTTT+TGG 0.238042 3_1:+86658368 Msa0383660:CDS
CCTGGTTCTGGTTCTGCTTC+CGG 0.244028 3_1:+86655003 Msa0383660:CDS
TCTGGTTCTGCTTCCGGTTC+CGG 0.264298 3_1:+86655009 Msa0383660:CDS
GGTTTGAAATCTCCTGGTTC+TGG 0.266567 3_1:+86654967 Msa0383660:CDS
TTCTTGTTTGTATTGCTTGC+TGG 0.274899 3_1:+86658782 Msa0383660:CDS
TTGCGAATCTCGTGAAAATA+TGG 0.276207 3_1:+86657553 Msa0383660:CDS
GAGTTGAAGCAATTCATTTC+AGG 0.278627 3_1:+86657372 Msa0383660:CDS
TTTGGAATACTCGGAATCTT+TGG 0.280205 3_1:-86656375 None:intergenic
CATGGACTCGTTATTCTTCC+CGG 0.286039 3_1:-86656003 None:intergenic
CAGGATTGATCCGTTTCTTC+AGG 0.286621 3_1:+86658664 Msa0383660:CDS
CAGTCTGTCTATTCTAGTCT+TGG 0.288410 3_1:-86657577 None:intergenic
GAGTTTCTCTTCTGAGAATT+TGG 0.289177 3_1:-86658335 None:intergenic
TTGGAGATCCCTCATCTTCC+AGG 0.293760 3_1:+86658645 Msa0383660:CDS
GCCGCATGTCGAACCTCTTC+TGG 0.301195 3_1:+86654805 Msa0383660:CDS
GTTCATACTAGTGATAAATA+AGG 0.302707 3_1:-86659630 None:intergenic
TGGAGGGCATTGTCTCTTTA+GGG 0.304365 3_1:+86656492 Msa0383660:CDS
TTCTGCTTCCGGTTCCGGTC+AGG 0.305029 3_1:+86655014 Msa0383660:CDS
ATAATGAGAGCTTCCTTTGA+TGG 0.306004 3_1:+86658758 Msa0383660:CDS
CAGCTTGCCATTCCAATAAC+TGG 0.314588 3_1:-86659184 None:intergenic
CTCGTCAGTGCCGGCATTGT+TGG 0.318661 3_1:-86658260 None:intergenic
CTATGATTTGTGAATCCTTC+CGG 0.327209 3_1:-86658826 None:intergenic
AAGTTCTAAAGGAGCTGTTT+TGG 0.333586 3_1:+86658861 Msa0383660:CDS
ATAAGCTCCCCAACCGTTAA+CGG 0.334980 3_1:-86655051 None:intergenic
AGTAAGGTTAAGAAGGCTTT+TGG 0.339002 3_1:+86654946 Msa0383660:CDS
GAAGAGGACTCTCAAGGTTC+TGG 0.339762 3_1:+86655875 Msa0383660:CDS
CCTGGGTGAATTTGATGTTC+TGG 0.342448 3_1:+86658433 Msa0383660:CDS
TGCCACTGGCCAGATGGATT+TGG 0.344716 3_1:+86656295 Msa0383660:CDS
TTCCACGATCAAAAGTTTCA+TGG 0.359783 3_1:-86656457 None:intergenic
AACTCGCAGGTTGCAACAAA+TGG 0.362002 3_1:+86658353 Msa0383660:CDS
TCTACATTGACTTCGATATT+GGG 0.363206 3_1:+86656407 Msa0383660:CDS
GCTCAAAATTTCAAGGCTTT+GGG 0.363933 3_1:+86658294 Msa0383660:CDS
GAAGATCTCGTAGGCAGTTA+AGG 0.364153 3_1:-86654779 None:intergenic
CAATTTCCCCTGACCGGAAC+CGG 0.365221 3_1:-86655022 None:intergenic
CTTAAAACTTGAACAGCATC+AGG 0.366499 3_1:-86657411 None:intergenic
CTGTCATGTCTCTTGCAAAT+AGG 0.366778 3_1:+86656042 Msa0383660:CDS
TTTGCATCCTTACATACCTT+TGG 0.368824 3_1:+86655911 Msa0383660:CDS
GTTATTCTTCCCGGTTTCGA+TGG 0.369414 3_1:-86655994 None:intergenic
AAATACTTTGCAGTGGATCC+TGG 0.374692 3_1:+86658415 Msa0383660:CDS
TATGATTTGTGAATCCTTCC+GGG 0.375343 3_1:-86658825 None:intergenic
TGTACGTTTCAATTCTTTCT+CGG 0.375733 3_1:-86656592 None:intergenic
TCTAAGAAGAGTCCTGGTTC+TGG 0.378612 3_1:+86654991 Msa0383660:CDS
TTGGATAGGCCCATCGAAAC+CGG 0.381362 3_1:+86655984 Msa0383660:CDS
GCCTACATCCTTTGCAAGAA+TGG 0.382078 3_1:-86657244 None:intergenic
GGCCAAGGGCTTGGTGCTAC+TGG 0.383544 3_1:+86659338 Msa0383660:three_prime_UTR
TGCTTGCTGGAGGCCCCTCT+CGG 0.388086 3_1:+86658795 Msa0383660:CDS
TCGTGGAAACGTTGAAACTA+TGG 0.390886 3_1:+86656472 Msa0383660:CDS
TGTTGTTGAATCTCTTCTCT+TGG 0.391006 3_1:-86654653 None:intergenic
GAAATTGAAACGACCGTTAA+CGG 0.392100 3_1:+86655038 Msa0383660:CDS
TCTGCTTCCGGTTCCGGTCA+GGG 0.394873 3_1:+86655015 Msa0383660:CDS
CAGCCGCTGCGCAGCAGAGT+TGG 0.396522 3_1:-86655940 None:intergenic
AGAATGACTATTATTGTTGT+TGG 0.398818 3_1:-86654863 None:intergenic
GCAGATTATTCATGCTGCTT+TGG 0.399117 3_1:+86655965 Msa0383660:CDS
TTGGAGTCCACAAGCAAATC+AGG 0.401211 3_1:+86657948 Msa0383660:CDS
CTCTGTGTCGGTCCTGAAAA+GGG 0.409212 3_1:-86658951 None:intergenic
AACTTCTACGGCTGCTAGTA+AGG 0.411095 3_1:+86654930 Msa0383660:CDS
ACTATTGGCTCAAAATTTCA+AGG 0.411689 3_1:+86658287 Msa0383660:CDS
TTGAATCTCTTCTCTTGGAA+TGG 0.413001 3_1:-86654648 None:intergenic
TCTCCAGCCGCGTGTCTTGA+AGG 0.414172 3_1:+86658542 Msa0383660:CDS
ACTCTCAAGGTTCTGGAGGC+TGG 0.416060 3_1:+86655882 Msa0383660:CDS
GTAGAAGCATTTCATAAATC+CGG 0.416656 3_1:-86656124 None:intergenic
ATTCCATTACCTCCAACTTC+CGG 0.419659 3_1:+86659037 Msa0383660:CDS
CGCTCAAGTTCCTGAAGAAA+CGG 0.420917 3_1:-86658674 None:intergenic
ACTATTATTGTTGTTGGAAG+AGG 0.421777 3_1:-86654857 None:intergenic
TAACGGTTGGGGAGCTTATG+AGG 0.423194 3_1:+86655055 Msa0383660:CDS
CTCTCACTGATTCATGTCAC+TGG 0.423710 3_1:+86656078 Msa0383660:CDS
TGAAACGACCGTTAACGGTT+GGG 0.425777 3_1:+86655043 Msa0383660:CDS
AAGAAAGAGTCAAGAAGAGT+TGG 0.426849 3_1:-86654577 None:intergenic
AAGAAGACCTGGGGAATACT+TGG 0.427059 3_1:+86656215 Msa0383660:CDS
AGATCGTCGGCGGTAGGCGG+TGG 0.427261 3_1:-86654706 None:intergenic
TCTACGCCATGCATCACTTC+AGG 0.428363 3_1:-86658069 None:intergenic
GTACGTTTCAATTCTTTCTC+GGG 0.431558 3_1:-86656591 None:intergenic
GAGAACATTGGCCAAGGGCT+TGG 0.432311 3_1:+86659329 Msa0383660:three_prime_UTR
ACTCTGCTGCGCAGCGGCTG+CGG 0.433323 3_1:+86655943 Msa0383660:CDS
TCGTCGGCGGTAGGCGGTGG+TGG 0.434640 3_1:-86654703 None:intergenic
CAGTTATTGGAATGGCAAGC+TGG 0.435210 3_1:+86659185 Msa0383660:three_prime_UTR
TCTCTGTGTCGGTCCTGAAA+AGG 0.436618 3_1:-86658952 None:intergenic
CTTTGGCCACGTAATATTGA+AGG 0.438511 3_1:-86658098 None:intergenic
TGTCCGGAAGTTGGAGGTAA+TGG 0.440626 3_1:-86659040 None:intergenic
ACCACAGCCAGATTTAGCTT+TGG 0.442738 3_1:-86658115 None:intergenic
CTTCATTGCAGGTTGGAAGA+AGG 0.444714 3_1:+86655766 Msa0383660:intron
ACTCGCAGGTTGCAACAAAT+GGG 0.445481 3_1:+86658354 Msa0383660:CDS
CTGAAGAAACGGATCAATCC+TGG 0.445795 3_1:-86658663 None:intergenic
TACGTGGCCAAAGCTAAATC+TGG 0.448308 3_1:+86658108 Msa0383660:CDS
GCACTGACGAGATGCACTAT+TGG 0.452098 3_1:+86658272 Msa0383660:CDS
GCTCAGAATTTCTGCTGGAC+AGG 0.452501 3_1:+86655128 Msa0383660:CDS
TTATTCTTCCCGGTTTCGAT+GGG 0.452779 3_1:-86655993 None:intergenic
AGTATGAACTGCAGTTATAC+AGG 0.453782 3_1:+86659644 Msa0383660:three_prime_UTR
GAATAGACAGACTGAAAGAC+TGG 0.454811 3_1:+86657586 Msa0383660:CDS
ATGCATTCTGCTCAAATGTC+TGG 0.456198 3_1:+86659211 Msa0383660:three_prime_UTR
GGATGATTTCAAAGTTCTAA+AGG 0.458797 3_1:+86658850 Msa0383660:CDS
GACTTATCCAAAGGTATGTA+AGG 0.460142 3_1:-86655918 None:intergenic
ATAAAACATGGCTTAGATCA+TGG 0.460701 3_1:-86658607 None:intergenic
CGCAGAACTTCAACAGAAGA+TGG 0.462658 3_1:-86657982 None:intergenic
GCACAAGGTCTTTCTCCAAC+TGG 0.462711 3_1:-86657443 None:intergenic
GAGGTATTCATCGGAGAGAT+TGG 0.474537 3_1:-86654755 None:intergenic
ACTCAAGAGATGGCATCCTT+TGG 0.474605 3_1:+86657305 Msa0383660:CDS
TTTCATCGATTTGTTGCCAC+TGG 0.477890 3_1:+86656281 Msa0383660:CDS
CTCTTTAGAGACCTTTCCTT+AGG 0.480652 3_1:+86654625 Msa0383660:CDS
ATGGGATTCCTCTGAATCTC+CGG 0.480843 3_1:+86656105 Msa0383660:CDS
TGTCGATCAAGCTTTACTAC+TGG 0.483725 3_1:+86659283 Msa0383660:three_prime_UTR
TACATTTATTCCAACAATGC+CGG 0.483907 3_1:+86658250 Msa0383660:CDS
GAAACGACCGTTAACGGTTG+GGG 0.484963 3_1:+86655044 Msa0383660:CDS
CAAAAGGTAAAAGGATGAAA+AGG 0.484984 3_1:-86659515 None:intergenic
ATCAGATGGACCCCACTGTC+CGG 0.485545 3_1:-86659056 None:intergenic
GCTTGCTGGAGGCCCCTCTC+GGG 0.487224 3_1:+86658796 Msa0383660:CDS
ATCACTTCAGGAAGCAATGC+AGG 0.488114 3_1:-86658057 None:intergenic
CGGATCAATCCTGGAAGATG+AGG 0.488330 3_1:-86658654 None:intergenic
ACCTCCAACTTCCGGACAGT+GGG 0.488634 3_1:+86659045 Msa0383660:CDS
GATTCATGTCACTGGGCAGA+TGG 0.489380 3_1:+86656086 Msa0383660:CDS
CCTCCTTGCCATTCTTGCAA+AGG 0.490097 3_1:+86657236 Msa0383660:CDS
TTCATACTAGTGATAAATAA+GGG 0.491060 3_1:-86659629 None:intergenic
GGACCCCACTGTCCGGAAGT+TGG 0.491064 3_1:-86659049 None:intergenic
AATGCAGCAACTCAAGGCTT+CGG 0.492178 3_1:+86655818 Msa0383660:CDS
TTAGTACGACCTTGCCCAGC+AGG 0.492465 3_1:+86659246 Msa0383660:three_prime_UTR
AATGTTGTTAAAGTTTCTTA+GGG 0.492562 3_1:-86659156 None:intergenic
AAAGAATTGAAACGTACATC+AGG 0.492897 3_1:+86656597 Msa0383660:CDS
TCTGTATCCGATCGATGTTA+TGG 0.494029 3_1:+86654519 Msa0383660:five_prime_UTR
TGCCTTCTGAAATAATAGAC+AGG 0.494168 3_1:+86658900 Msa0383660:CDS
TACACAAATGTTAAAATCCC+GGG 0.495816 3_1:-86659739 None:intergenic
AAAAGAGGGATAATAAAGAA+AGG 0.497499 3_1:+86654466 Msa0383660:five_prime_UTR
GCGTTGCTCAGAATTTCTGC+TGG 0.499189 3_1:+86655123 Msa0383660:CDS
GGATGCCATCTCTTGAGTAT+TGG 0.499480 3_1:-86657300 None:intergenic
TATCCTTCCTGATTTGCTTG+TGG 0.499773 3_1:-86657955 None:intergenic
CTGCTTCCGGTTCCGGTCAG+GGG 0.499825 3_1:+86655016 Msa0383660:CDS
TCAGAGATCGTTAACTTCTA+CGG 0.500517 3_1:+86654918 Msa0383660:CDS
AATGCAGGATGCATTGGTAT+TGG 0.500944 3_1:-86658042 None:intergenic
AGATGGCATCCTTTGGCAGC+AGG 0.503176 3_1:+86657312 Msa0383660:CDS
TTTAAGAGCTGCAGACCAGT+TGG 0.503301 3_1:+86657428 Msa0383660:CDS
TTGAAACGACCGTTAACGGT+TGG 0.505234 3_1:+86655042 Msa0383660:CDS
GGCAAGGTCGTACTAAATAC+AGG 0.506147 3_1:-86659239 None:intergenic
TTATTCATGCTGCTTTGGAT+AGG 0.506168 3_1:+86655970 Msa0383660:CDS
ATCAACAAGAATACAGTGAA+TGG 0.506366 3_1:+86655850 Msa0383660:CDS
ATACACAAATGTTAAAATCC+CGG 0.506834 3_1:-86659740 None:intergenic
GGCTGCTAGTAAGGTTAAGA+AGG 0.508957 3_1:+86654939 Msa0383660:CDS
GAGGGAAGATCGTCGGCGGT+AGG 0.509837 3_1:-86654712 None:intergenic
CTTTGCAAGAATGGCAAGGA+GGG 0.509853 3_1:-86657235 None:intergenic
GCTACCCTCCATGCATGCTA+TGG 0.509945 3_1:+86657345 Msa0383660:CDS
ATCTTTAACGAAGGTGGTGA+TGG 0.510021 3_1:-86654676 None:intergenic
TATTGGGATGGGCAGAGAAA+AGG 0.510276 3_1:+86656423 Msa0383660:CDS
AGTTGCTGCATTAGCTCAAG+TGG 0.511277 3_1:-86655807 None:intergenic
GAGCTTCTGTCTGATGCTGA+TGG 0.511404 3_1:+86656317 Msa0383660:CDS
ATTCCTTCAAGACACGCGGC+TGG 0.512629 3_1:-86658545 None:intergenic
GGAAGCAATGCAGGATGCAT+TGG 0.513711 3_1:-86658048 None:intergenic
GGAGGGCATTGTCTCTTTAG+GGG 0.514556 3_1:+86656493 Msa0383660:CDS
CATTTATTCTTGCCTCACTT+CGG 0.517397 3_1:-86659376 None:intergenic
AACAGAGATTATGATACGTC+TGG 0.518236 3_1:-86656244 None:intergenic
GTGAGGCAAGAATAAATGTT+GGG 0.520078 3_1:+86659381 Msa0383660:three_prime_UTR
GCCATTCTTGCAAAGGATGT+AGG 0.520093 3_1:+86657243 Msa0383660:CDS
TGGAGAAAGCAGACTCAAGC+AGG 0.520288 3_1:+86657181 Msa0383660:CDS
TGCCAGTAGCACCAAGCCCT+TGG 0.520380 3_1:-86659340 None:intergenic
TCTTCTCTTGGAATGGCCTA+AGG 0.521382 3_1:-86654641 None:intergenic
ACAGAAGCTCCAAATCCATC+TGG 0.522010 3_1:-86656304 None:intergenic
TCTGGTTCTAAGAAGAGTCC+TGG 0.522127 3_1:+86654985 Msa0383660:CDS
AAAGGGGAAGGATAGACCTC+AGG 0.522716 3_1:-86658934 None:intergenic
TGCAAAGGATGTAGGCAGCC+TGG 0.523674 3_1:+86657251 Msa0383660:CDS
AACCTGTCTATTATTTCAGA+AGG 0.523873 3_1:-86658902 None:intergenic
AATAATGTATTTGGATCAGA+TGG 0.524578 3_1:-86659070 None:intergenic
GGAAGATCGTCGGCGGTAGG+CGG 0.525507 3_1:-86654709 None:intergenic
AATGCAGATAAATTACCTGC+TGG 0.526178 3_1:-86659261 None:intergenic
CTTGCAAATAGGTCGTATGA+TGG 0.527450 3_1:+86656053 Msa0383660:CDS
ATTAGTATACATGCAAAACC+CGG 0.531592 3_1:+86659721 Msa0383660:three_prime_UTR
TCGTTTCAATTTCCCCTGAC+CGG 0.532155 3_1:-86655028 None:intergenic
GTCAAGAAGAGTTGGATGGA+TGG 0.535054 3_1:-86654569 None:intergenic
GAAAGTTGACCGAGTGGGGA+GGG 0.535613 3_1:-86654730 None:intergenic
CCTTGTGCAGATAGCTGTTG+AGG 0.535897 3_1:+86657458 Msa0383660:CDS
ACTCGTTTCCATAGCATGCA+TGG 0.536398 3_1:-86657353 None:intergenic
ATTTGTTGCCACTGGCCAGA+TGG 0.538861 3_1:+86656289 Msa0383660:CDS
GACGATCTTCCCTCCCCACT+CGG 0.540231 3_1:+86654721 Msa0383660:CDS
CCGGAAGCAGAACCAGAACC+AGG 0.540336 3_1:-86655003 None:intergenic
ACGTCTCACACGCGAATCCA+TGG 0.540350 3_1:-86655100 None:intergenic
AATACTTTGCAGTGGATCCT+GGG 0.540872 3_1:+86658416 Msa0383660:CDS
CCGAGTCAGAACTCGCCGCT+TGG 0.541782 3_1:+86654892 Msa0383660:CDS
GATGAGGGTTTCTGAAGCCA+TGG 0.541906 3_1:+86655083 Msa0383660:CDS
CTCAATGAGGCTCTCTGTGT+CGG 0.542053 3_1:-86658963 None:intergenic
AGTTATTGGAATGGCAAGCT+GGG 0.542402 3_1:+86659186 Msa0383660:three_prime_UTR
AAGAGTCAAGAAGAGTTGGA+TGG 0.543093 3_1:-86654573 None:intergenic
GGCATTATCTTTAACGAAGG+TGG 0.543436 3_1:-86654682 None:intergenic
CATTGACTTCGATATTGGGA+TGG 0.544223 3_1:+86656411 Msa0383660:CDS
TGGAACAAATCAAGAAGACC+TGG 0.545660 3_1:+86656204 Msa0383660:CDS
TTATGGGATAGTTTGTATGT+TGG 0.550276 3_1:+86658626 Msa0383660:CDS
GCACCTTCTGCTTCGTAAGG+AGG 0.551903 3_1:-86657528 None:intergenic
CTCTTCTTAGAACCAGAACC+AGG 0.557153 3_1:-86654979 None:intergenic
ATTGCACCTTCTGCTTCGTA+AGG 0.562101 3_1:-86657531 None:intergenic
TTCTCAGAAGAGAAACTCGC+AGG 0.563521 3_1:+86658340 Msa0383660:CDS
TGAGCTAATGCAGCAACTCA+AGG 0.568356 3_1:+86655812 Msa0383660:CDS
ATTCATGTCACTGGGCAGAT+GGG 0.568585 3_1:+86656087 Msa0383660:CDS
GAAGCTGAAAGAATGCATCC+AGG 0.568789 3_1:-86658020 None:intergenic
AGACATATAAATCTTCTGCC+AGG 0.568965 3_1:+86659008 Msa0383660:CDS
ATAGTGCATCTCGTCAGTGC+CGG 0.569024 3_1:-86658269 None:intergenic
TTGAGAACCAGTTATTGGAA+TGG 0.570303 3_1:+86659177 Msa0383660:three_prime_UTR
TTGCAAGAATGGCAAGGAGG+GGG 0.571275 3_1:-86657233 None:intergenic
TTGTTTGTATTGCTTGCTGG+AGG 0.576276 3_1:+86658785 Msa0383660:CDS
GCCTCATTGAGCAGTTTAGA+CGG 0.577385 3_1:+86658975 Msa0383660:CDS
AATACAGTGAATGGCAGAAG+AGG 0.578035 3_1:+86655859 Msa0383660:CDS
ATTGACTTCGATATTGGGAT+GGG 0.578379 3_1:+86656412 Msa0383660:CDS
GGAAAGTTGACCGAGTGGGG+AGG 0.578684 3_1:-86654731 None:intergenic
AGTGAGGCAAGAATAAATGT+TGG 0.578710 3_1:+86659380 Msa0383660:three_prime_UTR
TCATAAATCCGGAGATTCAG+AGG 0.580170 3_1:-86656113 None:intergenic
GAAGAATAACGAGTCCATGC+AGG 0.580172 3_1:+86656007 Msa0383660:CDS
TCTTGGAATGGCCTAAGGAA+AGG 0.581203 3_1:-86654636 None:intergenic
ATGCAGATAAATTACCTGCT+GGG 0.581915 3_1:-86659260 None:intergenic
GATTCAGTGGACAGTGATGA+TGG 0.583618 3_1:+86657480 Msa0383660:CDS
TTCGCATAAATACTTTGCAG+TGG 0.584932 3_1:+86658408 Msa0383660:CDS
TGGATAGGCCCATCGAAACC+GGG 0.585233 3_1:+86655985 Msa0383660:CDS
TTTCACTACACTGAGAACAT+TGG 0.585773 3_1:+86659317 Msa0383660:three_prime_UTR
GATAAATTACCTGCTGGGCA+AGG 0.587039 3_1:-86659255 None:intergenic
TACAAACAAGAATCCATCAA+AGG 0.587937 3_1:-86658771 None:intergenic
TACACTGAGAACATTGGCCA+AGG 0.588292 3_1:+86659323 Msa0383660:three_prime_UTR
TCTCACTGATTCATGTCACT+GGG 0.588827 3_1:+86656079 Msa0383660:CDS
TGGTGGAAAGTTGACCGAGT+GGG 0.590747 3_1:-86654735 None:intergenic
AAGGGGAAGGATAGACCTCA+GGG 0.591323 3_1:-86658933 None:intergenic
GCGAATCATAAATGAAACCC+TGG 0.591476 3_1:+86658002 Msa0383660:CDS
GCCAAAGCTAAATCTGGCTG+TGG 0.591978 3_1:+86658114 Msa0383660:CDS
GGTGGCATTATCTTTAACGA+AGG 0.592180 3_1:-86654685 None:intergenic
GATAGCTGTTGAGGATTCAG+TGG 0.593196 3_1:+86657467 Msa0383660:CDS
GTTCAATCCAAGTATTCCCC+AGG 0.593786 3_1:-86656222 None:intergenic
GAGTGGGGAGGGAAGATCGT+CGG 0.597777 3_1:-86654719 None:intergenic
GGAACAAATCAAGAAGACCT+GGG 0.600803 3_1:+86656205 Msa0383660:CDS
TGGAAGAAGGATTGAGTCTG+TGG 0.601665 3_1:+86655779 Msa0383660:CDS
GTATTCATCGGAGAGATTGG+TGG 0.602433 3_1:-86654752 None:intergenic
CCAGAACATCAAATTCACCC+AGG 0.604022 3_1:-86658433 None:intergenic
ACCAGAAGAGGTTCGACATG+CGG 0.604617 3_1:-86654806 None:intergenic
TTAAAACTTGAACAGCATCA+GGG 0.605982 3_1:-86657410 None:intergenic
AGCTTATGAGGAATCAGATG+AGG 0.607480 3_1:+86655067 Msa0383660:CDS
TCTGTGTCGGTCCTGAAAAG+GGG 0.608220 3_1:-86658950 None:intergenic
CCCCACTGTCCGGAAGTTGG+AGG 0.609288 3_1:-86659046 None:intergenic
AAGCTGAAAGAATGCATCCA+GGG 0.609415 3_1:-86658019 None:intergenic
ACTGAGAGGCTTACCAGAAG+AGG 0.611640 3_1:-86654818 None:intergenic
GGTGGAAAGTTGACCGAGTG+GGG 0.612431 3_1:-86654734 None:intergenic
ACAGCAAGACCTGCTGCCAA+AGG 0.613633 3_1:-86657321 None:intergenic
CCAAGCGGCGAGTTCTGACT+CGG 0.613768 3_1:-86654892 None:intergenic
TGGAAACGTTGAAACTATGG+AGG 0.615215 3_1:+86656475 Msa0383660:CDS
TTTGGCAGCAGGTCTTGCTG+TGG 0.615431 3_1:+86657323 Msa0383660:CDS
AGTTAAGGTGAGGTATTCAT+CGG 0.619093 3_1:-86654764 None:intergenic
TCAGTCCAATACTCAAGAGA+TGG 0.621303 3_1:+86657295 Msa0383660:CDS
TACCTCCAACTTCCGGACAG+TGG 0.623157 3_1:+86659044 Msa0383660:CDS
TTTGCAAGAATGGCAAGGAG+GGG 0.623362 3_1:-86657234 None:intergenic
GCTGCTACCATAACATCGAT+CGG 0.624338 3_1:-86654526 None:intergenic
GAAGGATTCACAAATCATAG+AGG 0.624526 3_1:+86658829 Msa0383660:CDS
GGATCAATCCTGGAAGATGA+GGG 0.625391 3_1:-86658653 None:intergenic
CTCCAAATCCATCTGGCCAG+TGG 0.625417 3_1:-86656297 None:intergenic
GAAAGCAGACTCAAGCAGGA+GGG 0.626703 3_1:+86657185 Msa0383660:CDS
TGTCGGTCCTGAAAAGGGGA+AGG 0.627708 3_1:-86658946 None:intergenic
TTTATGCGAACACAGAGTTG+TGG 0.627937 3_1:-86658395 None:intergenic
CCTTTGCAAGAATGGCAAGG+AGG 0.631775 3_1:-86657236 None:intergenic
TGATAGAAATCTGCAGCAAG+AGG 0.632292 3_1:+86657611 Msa0383660:CDS
ATGCCTCCTTACGAAGCAGA+AGG 0.634351 3_1:+86657525 Msa0383660:CDS
CCTCAACAGCTATCTGCACA+AGG 0.635306 3_1:-86657458 None:intergenic
TCCGTCTAAACTGCTCAATG+AGG 0.636700 3_1:-86658976 None:intergenic
GAGGACTCTCAAGGTTCTGG+AGG 0.638648 3_1:+86655878 Msa0383660:CDS
GCTTATGAGGAATCAGATGA+GGG 0.638968 3_1:+86655068 Msa0383660:CDS
TAAAACTTGAACAGCATCAG+GGG 0.639874 3_1:-86657409 None:intergenic
AGCGGCTAAGATATTGCTTG+AGG 0.639941 3_1:+86656520 Msa0383660:CDS
CTCGCAGGTTGCAACAAATG+GGG 0.641472 3_1:+86658355 Msa0383660:CDS
TTAGTATACATGCAAAACCC+GGG 0.641619 3_1:+86659722 Msa0383660:three_prime_UTR
GTTTCCATAGCATGCATGGA+GGG 0.644542 3_1:-86657349 None:intergenic
ACAAACTATCCCATAAAACA+TGG 0.645581 3_1:-86658619 None:intergenic
TTGCTTCCTGAAGTGATGCA+TGG 0.649727 3_1:+86658063 Msa0383660:CDS
CATCCTTTGCAAGAATGGCA+AGG 0.651566 3_1:-86657239 None:intergenic
TAAGGGACAACACAATCCAA+AGG 0.652202 3_1:-86659612 None:intergenic
AGAAAGCAGACTCAAGCAGG+AGG 0.652723 3_1:+86657184 Msa0383660:CDS
AGAACTACGAAGAACCTGCA+TGG 0.652762 3_1:-86656021 None:intergenic
TTTCTTTCGAGTCCGAAGTG+AGG 0.656193 3_1:+86659364 Msa0383660:three_prime_UTR
ATATATCTAATGAATATCGT+CGG 0.658453 3_1:+86656543 Msa0383660:CDS
TGTCTCTTTAGGGGTAGCAG+CGG 0.659641 3_1:+86656502 Msa0383660:CDS
TCAAGCTTTACTACTGGACA+TGG 0.660720 3_1:+86659289 Msa0383660:three_prime_UTR
ATGGCAGAAGAGGACTCTCA+AGG 0.662747 3_1:+86655869 Msa0383660:CDS
GCAGAGTTGGACTTATCCAA+AGG 0.663196 3_1:-86655927 None:intergenic
TGGGGAGGGAAGATCGTCGG+CGG 0.664820 3_1:-86654716 None:intergenic
CGTTTCCATAGCATGCATGG+AGG 0.666154 3_1:-86657350 None:intergenic
ACACTGAGAACATTGGCCAA+GGG 0.667900 3_1:+86659324 Msa0383660:three_prime_UTR
TCTCGTAGGCAGTTAAGGTG+AGG 0.668289 3_1:-86654774 None:intergenic
CTGAATTCCTTCAAGACACG+CGG 0.671823 3_1:-86658549 None:intergenic
TTGGTGGAAAGTTGACCGAG+TGG 0.672351 3_1:-86654736 None:intergenic
AATAGACAGACTGAAAGACT+GGG 0.674683 3_1:+86657587 Msa0383660:CDS
GGAAACGTTGAAACTATGGA+GGG 0.678419 3_1:+86656476 Msa0383660:CDS
GAAGATTAGAGATGTCTCTG+TGG 0.679006 3_1:+86659471 Msa0383660:three_prime_UTR
AGGAATTCAGCAGCTATGTG+AGG 0.683434 3_1:+86658562 Msa0383660:CDS
AGGTAATGGAATTCTAGACC+TGG 0.684017 3_1:-86659026 None:intergenic
TATCTAATGAATATCGTCGG+AGG 0.690045 3_1:+86656546 Msa0383660:CDS
AACGATCTCTGAATACCAAG+CGG 0.693612 3_1:-86654907 None:intergenic
TTAGCAATTGATGAACTGAG+AGG 0.694391 3_1:-86654832 None:intergenic
GAACAAATCAAGAAGACCTG+GGG 0.694702 3_1:+86656206 Msa0383660:CDS
AGTCCACAAGCAAATCAGGA+AGG 0.695524 3_1:+86657952 Msa0383660:CDS
TGTATACTAATAAACAAACA+AGG 0.701476 3_1:-86659709 None:intergenic
AGTCCAACTCTGCTGCGCAG+CGG 0.703256 3_1:+86655937 Msa0383660:CDS
TGCGGCGACGAAGATCTCGT+AGG 0.722455 3_1:-86654788 None:intergenic
ACAGGTTTGCAACTACCCTG+AGG 0.728126 3_1:+86658918 Msa0383660:CDS
TAGATGCCTTCAATATTACG+TGG 0.734258 3_1:+86658092 Msa0383660:CDS
CCTCCAACTTCCGGACAGTG+GGG 0.745165 3_1:+86659046 Msa0383660:CDS
TCAGTGGACAGTGATGATGG+TGG 0.776008 3_1:+86657483 Msa0383660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTCAATATTCAATTAT+TGG + chr3_1:86655240-86655259 Msa0383660:intron 10.0%
!! TTTAATTATTCTTTAGTAAA+AGG + chr3_1:86656672-86656691 Msa0383660:intron 10.0%
!! TAAAATAAAAAAATCTCAAA+AGG - chr3_1:86659534-86659553 None:intergenic 10.0%
!! TGTAAACCAAAAAATTTAAT+TGG - chr3_1:86656931-86656950 None:intergenic 15.0%
!!! ATTAAATTTTTTGGTTTACA+AGG + chr3_1:86656931-86656950 Msa0383660:intron 15.0%
!!! AATATTCTTTTAGTTGATTA+GGG + chr3_1:86657816-86657835 Msa0383660:intron 15.0%
!!! AAAGAATAATTACTCTTTTA+CGG + chr3_1:86658459-86658478 Msa0383660:CDS 15.0%
!!! ATTTTCGATTCATTAATTTT+TGG + chr3_1:86659449-86659468 Msa0383660:three_prime_UTR 15.0%
!!! GATGATTTTTCGTTTTTATT+TGG + chr3_1:86655207-86655226 Msa0383660:intron 20.0%
!!! TCAAAAGCTCTAATTAATTT+TGG - chr3_1:86655452-86655471 None:intergenic 20.0%
!!! TTTTACTTTTTAGTTGAACA+TGG + chr3_1:86655719-86655738 Msa0383660:intron 20.0%
!! ATATATCTAATGAATATCGT+CGG + chr3_1:86656543-86656562 Msa0383660:CDS 20.0%
!!! TGCATAGATTTTACTTATAA+AGG + chr3_1:86656824-86656843 Msa0383660:intron 20.0%
!! ATTTAATTGGCATGTAAATA+TGG - chr3_1:86656918-86656937 None:intergenic 20.0%
!!! TACATGCCAATTAAATTTTT+TGG + chr3_1:86656922-86656941 Msa0383660:intron 20.0%
!!! TTGTTACTTGAAAAAATGTT+AGG + chr3_1:86657687-86657706 Msa0383660:intron 20.0%
!!! TGTTACTTGAAAAAATGTTA+GGG + chr3_1:86657688-86657707 Msa0383660:intron 20.0%
!!! CAATATTCTTTTAGTTGATT+AGG + chr3_1:86657815-86657834 Msa0383660:intron 20.0%
!!! AATAGTTTAGCTCTTATATA+TGG + chr3_1:86658155-86658174 Msa0383660:intron 20.0%
!! ATCTTTAATAACTGTATATG+TGG + chr3_1:86658179-86658198 Msa0383660:intron 20.0%
!!! TGTTTTTTATTCCAATATTC+AGG + chr3_1:86658218-86658237 Msa0383660:intron 20.0%
!! AAAACACGTAATAATGTATT+TGG - chr3_1:86659082-86659101 None:intergenic 20.0%
!! AATGTTGTTAAAGTTTCTTA+GGG - chr3_1:86659159-86659178 None:intergenic 20.0%
!! AAAAAATCTCAAAAGGTAAA+AGG - chr3_1:86659527-86659546 None:intergenic 20.0%
!! TTCATACTAGTGATAAATAA+GGG - chr3_1:86659632-86659651 None:intergenic 20.0%
!!! TACTTTTTCAATCAACAAAT+AGG - chr3_1:86659680-86659699 None:intergenic 20.0%
!! TGTATACTAATAAACAAACA+AGG - chr3_1:86659712-86659731 None:intergenic 20.0%
! AAAAGAGGGATAATAAAGAA+AGG + chr3_1:86654466-86654485 Msa0383660:five_prime_UTR 25.0%
!! TTTCTTCTTCTTTTCTTCAA+TGG + chr3_1:86654594-86654613 Msa0383660:exon 25.0%
! AGAATGACTATTATTGTTGT+TGG - chr3_1:86654866-86654885 None:intergenic 25.0%
! GAAAAATCATCAACAAATTC+TGG - chr3_1:86655198-86655217 None:intergenic 25.0%
! ATTTCAACAAACAGTATCAT+TGG - chr3_1:86655342-86655361 None:intergenic 25.0%
! AGTCAAACAACAAATTTGAA+TGG - chr3_1:86655492-86655511 None:intergenic 25.0%
! AATGTAAAGTAATTCATGCT+TGG - chr3_1:86655534-86655553 None:intergenic 25.0%
!!! GATTTTGAGTGAATTGATTA+AGG - chr3_1:86655571-86655590 None:intergenic 25.0%
! AATAAACATTTACACAGACA+AGG - chr3_1:86655634-86655653 None:intergenic 25.0%
! ATTTGCATTGGAATTGAAAA+GGG + chr3_1:86655679-86655698 Msa0383660:intron 25.0%
!! ATCATAATCTCTGTTTTACT+TGG + chr3_1:86656252-86656271 Msa0383660:CDS 25.0%
!! TCATAATCTCTGTTTTACTT+GGG + chr3_1:86656253-86656272 Msa0383660:CDS 25.0%
!!! ACTCAAAATTTTGGAATACT+CGG - chr3_1:86656387-86656406 None:intergenic 25.0%
!! CAATGTAGAACTCAAAATTT+TGG - chr3_1:86656396-86656415 None:intergenic 25.0%
!!! TTGGAATTTGCTTTTAACTT+TGG + chr3_1:86656752-86656771 Msa0383660:intron 25.0%
!! TGCTTTACAAACTAGAATTT+TGG + chr3_1:86656863-86656882 Msa0383660:intron 25.0%
!! GCTTTACAAACTAGAATTTT+GGG + chr3_1:86656864-86656883 Msa0383660:intron 25.0%
! ATAAATAACATGCTATTGCA+CGG - chr3_1:86657029-86657048 None:intergenic 25.0%
!! TGCAATAGCATGTTATTTAT+GGG + chr3_1:86657029-86657048 Msa0383660:intron 25.0%
! TCACAATGAATATCATCAAT+GGG - chr3_1:86657665-86657684 None:intergenic 25.0%
! GATTAGGGATAATATGTTTA+TGG + chr3_1:86657831-86657850 Msa0383660:intron 25.0%
! TGATTAATTTCTGTGTATTC+TGG + chr3_1:86657863-86657882 Msa0383660:intron 25.0%
!!! AGAGAAGAAGATTTTTCAAA+CGG + chr3_1:86658497-86658516 Msa0383660:CDS 25.0%
! AATAATGTATTTGGATCAGA+TGG - chr3_1:86659073-86659092 None:intergenic 25.0%
! CAATGTTGTTAAAGTTTCTT+AGG - chr3_1:86659160-86659179 None:intergenic 25.0%
!!! TTAACCACCTTTTTTCAAAT+AGG - chr3_1:86659424-86659443 None:intergenic 25.0%
!! ATTCTTTTGATGAATTCCTT+TGG + chr3_1:86659596-86659615 Msa0383660:three_prime_UTR 25.0%
! GTTCATACTAGTGATAAATA+AGG - chr3_1:86659633-86659652 None:intergenic 25.0%
! ACTATTATTGTTGTTGGAAG+AGG - chr3_1:86654860-86654879 None:intergenic 30.0%
ACAGTATCATTGGATTAAAG+TGG - chr3_1:86655332-86655351 None:intergenic 30.0%
TTGACTAGATTCATTCCATA+AGG + chr3_1:86655366-86655385 Msa0383660:intron 30.0%
TGTGTAAGTAAGTGTATGAT+TGG + chr3_1:86655409-86655428 Msa0383660:intron 30.0%
!!! AATTTTGGCTACTCAAAAAG+TGG - chr3_1:86655437-86655456 None:intergenic 30.0%
AGTGAATTGATTAAGGCTAA+AGG - chr3_1:86655564-86655583 None:intergenic 30.0%
GATTTGCATTGGAATTGAAA+AGG + chr3_1:86655678-86655697 Msa0383660:intron 30.0%
ATCAACAAGAATACAGTGAA+TGG + chr3_1:86655850-86655869 Msa0383660:CDS 30.0%
!! GTAGAAGCATTTCATAAATC+CGG - chr3_1:86656127-86656146 None:intergenic 30.0%
!! TGAAGATTTTGATGAGCTAA+TGG + chr3_1:86656184-86656203 Msa0383660:CDS 30.0%
!! TTCTACATTGACTTCGATAT+TGG + chr3_1:86656406-86656425 Msa0383660:CDS 30.0%
!! TCTACATTGACTTCGATATT+GGG + chr3_1:86656407-86656426 Msa0383660:CDS 30.0%
TGTACGTTTCAATTCTTTCT+CGG - chr3_1:86656595-86656614 None:intergenic 30.0%
AAAGAATTGAAACGTACATC+AGG + chr3_1:86656597-86656616 Msa0383660:CDS 30.0%
GAATGCTAAGAGATGTTTAA+AGG - chr3_1:86656778-86656797 None:intergenic 30.0%
! GTGCAATAGCATGTTATTTA+TGG + chr3_1:86657028-86657047 Msa0383660:intron 30.0%
TTAAAACTTGAACAGCATCA+GGG - chr3_1:86657413-86657432 None:intergenic 30.0%
GTCACAATGAATATCATCAA+TGG - chr3_1:86657666-86657685 None:intergenic 30.0%
ATTAAGTCATTGCAAACTGT+GGG + chr3_1:86657763-86657782 Msa0383660:intron 30.0%
ACTATGTTAGTTCCACATAA+AGG - chr3_1:86657909-86657928 None:intergenic 30.0%
TATTTCGAGATCCTGAATAT+TGG - chr3_1:86658232-86658251 None:intergenic 30.0%
TACATTTATTCCAACAATGC+CGG + chr3_1:86658250-86658269 Msa0383660:CDS 30.0%
!! ACTATTGGCTCAAAATTTCA+AGG + chr3_1:86658287-86658306 Msa0383660:CDS 30.0%
GTTTGAAAAATCTTCTTCTC+TGG - chr3_1:86658498-86658517 None:intergenic 30.0%
ATAAAACATGGCTTAGATCA+TGG - chr3_1:86658610-86658629 None:intergenic 30.0%
! ATGATCTAAGCCATGTTTTA+TGG + chr3_1:86658609-86658628 Msa0383660:CDS 30.0%
! TGATCTAAGCCATGTTTTAT+GGG + chr3_1:86658610-86658629 Msa0383660:CDS 30.0%
ACAAACTATCCCATAAAACA+TGG - chr3_1:86658622-86658641 None:intergenic 30.0%
! TTATGGGATAGTTTGTATGT+TGG + chr3_1:86658626-86658645 Msa0383660:CDS 30.0%
TACAAACAAGAATCCATCAA+AGG - chr3_1:86658774-86658793 None:intergenic 30.0%
! GGATGATTTCAAAGTTCTAA+AGG + chr3_1:86658850-86658869 Msa0383660:CDS 30.0%
AACCTGTCTATTATTTCAGA+AGG - chr3_1:86658905-86658924 None:intergenic 30.0%
ACACAAGCCTATTTGAAAAA+AGG + chr3_1:86659414-86659433 Msa0383660:three_prime_UTR 30.0%
CAAAAGGTAAAAGGATGAAA+AGG - chr3_1:86659518-86659537 None:intergenic 30.0%
ATTAGTATACATGCAAAACC+CGG + chr3_1:86659721-86659740 Msa0383660:three_prime_UTR 30.0%
AAGAAAGAGTCAAGAAGAGT+TGG - chr3_1:86654580-86654599 None:intergenic 35.0%
TTGAATCTCTTCTCTTGGAA+TGG - chr3_1:86654651-86654670 None:intergenic 35.0%
TGTTGTTGAATCTCTTCTCT+TGG - chr3_1:86654656-86654675 None:intergenic 35.0%
! AGTTAAGGTGAGGTATTCAT+CGG - chr3_1:86654767-86654786 None:intergenic 35.0%
TTAGCAATTGATGAACTGAG+AGG - chr3_1:86654835-86654854 None:intergenic 35.0%
TCAGAGATCGTTAACTTCTA+CGG + chr3_1:86654918-86654937 Msa0383660:CDS 35.0%
! AGTAAGGTTAAGAAGGCTTT+TGG + chr3_1:86654946-86654965 Msa0383660:CDS 35.0%
GAAATTGAAACGACCGTTAA+CGG + chr3_1:86655038-86655057 Msa0383660:CDS 35.0%
!!! CTGCTTTTTTGATCTGCTTT+TGG + chr3_1:86655273-86655292 Msa0383660:intron 35.0%
ACTTAACGAAGAACACCTTA+TGG - chr3_1:86655384-86655403 None:intergenic 35.0%
GGAATAATTAAGCGTGTGTT+TGG - chr3_1:86655613-86655632 None:intergenic 35.0%
TGACTACACTAGATTTGCAT+TGG + chr3_1:86655667-86655686 Msa0383660:intron 35.0%
! TAACTTGTGAACTTCATTGC+AGG + chr3_1:86655755-86655774 Msa0383660:intron 35.0%
TTTGCATCCTTACATACCTT+TGG + chr3_1:86655911-86655930 Msa0383660:CDS 35.0%
! GACTTATCCAAAGGTATGTA+AGG - chr3_1:86655921-86655940 None:intergenic 35.0%
!! TTATTCATGCTGCTTTGGAT+AGG + chr3_1:86655970-86655989 Msa0383660:CDS 35.0%
AACAGAGATTATGATACGTC+TGG - chr3_1:86656247-86656266 None:intergenic 35.0%
! TTTGGAATACTCGGAATCTT+TGG - chr3_1:86656378-86656397 None:intergenic 35.0%
! ATTGACTTCGATATTGGGAT+GGG + chr3_1:86656412-86656431 Msa0383660:CDS 35.0%
! TACCATGAAACTTTTGATCG+TGG + chr3_1:86656455-86656474 Msa0383660:CDS 35.0%
TTCCACGATCAAAAGTTTCA+TGG - chr3_1:86656460-86656479 None:intergenic 35.0%
TATCTAATGAATATCGTCGG+AGG + chr3_1:86656546-86656565 Msa0383660:CDS 35.0%
GTACGTTTCAATTCTTTCTC+GGG - chr3_1:86656594-86656613 None:intergenic 35.0%
CAGACTATATAAACTTGCCT+GGG - chr3_1:86656645-86656664 None:intergenic 35.0%
ACAGACTATATAAACTTGCC+TGG - chr3_1:86656646-86656665 None:intergenic 35.0%
AGTGCTTAATGTGAGAGAAT+TGG + chr3_1:86656733-86656752 Msa0383660:intron 35.0%
! TTGTTGAGTTGTGCAAGTAA+CGG + chr3_1:86656972-86656991 Msa0383660:intron 35.0%
GTTTGTTCATGAACAAACCT+AGG + chr3_1:86656998-86657017 Msa0383660:intron 35.0%
! TTTTGCTGCTGCATAGATAA+TGG + chr3_1:86657161-86657180 Msa0383660:intron 35.0%
GAGTTGAAGCAATTCATTTC+AGG + chr3_1:86657372-86657391 Msa0383660:CDS 35.0%
TAAAACTTGAACAGCATCAG+GGG - chr3_1:86657412-86657431 None:intergenic 35.0%
CTTAAAACTTGAACAGCATC+AGG - chr3_1:86657414-86657433 None:intergenic 35.0%
TTGCGAATCTCGTGAAAATA+TGG + chr3_1:86657553-86657572 Msa0383660:CDS 35.0%
AATAGACAGACTGAAAGACT+GGG + chr3_1:86657587-86657606 Msa0383660:CDS 35.0%
GTCTTATGTTCTCTTGAGTT+TGG - chr3_1:86657732-86657751 None:intergenic 35.0%
CATTAAGTCATTGCAAACTG+TGG + chr3_1:86657762-86657781 Msa0383660:intron 35.0%
GTCAATTGATTGCCTTTATG+TGG + chr3_1:86657894-86657913 Msa0383660:intron 35.0%
TTACTGTGATATCCTAGCTT+TGG + chr3_1:86657929-86657948 Msa0383660:intron 35.0%
TAGATGCCTTCAATATTACG+TGG + chr3_1:86658092-86658111 Msa0383660:CDS 35.0%
GCTCAAAATTTCAAGGCTTT+GGG + chr3_1:86658294-86658313 Msa0383660:CDS 35.0%
! GAGTTTCTCTTCTGAGAATT+TGG - chr3_1:86658338-86658357 None:intergenic 35.0%
TTCGCATAAATACTTTGCAG+TGG + chr3_1:86658408-86658427 Msa0383660:CDS 35.0%
ATAATGAGAGCTTCCTTTGA+TGG + chr3_1:86658758-86658777 Msa0383660:CDS 35.0%
! TTCTTGTTTGTATTGCTTGC+TGG + chr3_1:86658782-86658801 Msa0383660:CDS 35.0%
! TATGATTTGTGAATCCTTCC+GGG - chr3_1:86658828-86658847 None:intergenic 35.0%
! CTATGATTTGTGAATCCTTC+CGG - chr3_1:86658829-86658848 None:intergenic 35.0%
GAAGGATTCACAAATCATAG+AGG + chr3_1:86658829-86658848 Msa0383660:CDS 35.0%
!!! AAGTTCTAAAGGAGCTGTTT+TGG + chr3_1:86658861-86658880 Msa0383660:CDS 35.0%
!!! AGTTCTAAAGGAGCTGTTTT+GGG + chr3_1:86658862-86658881 Msa0383660:CDS 35.0%
!! TGCCTTCTGAAATAATAGAC+AGG + chr3_1:86658900-86658919 Msa0383660:CDS 35.0%
AGACATATAAATCTTCTGCC+AGG + chr3_1:86659008-86659027 Msa0383660:CDS 35.0%
CAACATTGAGAACCAGTTAT+TGG + chr3_1:86659172-86659191 Msa0383660:three_prime_UTR 35.0%
TTGAGAACCAGTTATTGGAA+TGG + chr3_1:86659177-86659196 Msa0383660:three_prime_UTR 35.0%
ATGCAGATAAATTACCTGCT+GGG - chr3_1:86659263-86659282 None:intergenic 35.0%
AATGCAGATAAATTACCTGC+TGG - chr3_1:86659264-86659283 None:intergenic 35.0%
TTTCACTACACTGAGAACAT+TGG + chr3_1:86659317-86659336 Msa0383660:three_prime_UTR 35.0%
CATTTATTCTTGCCTCACTT+CGG - chr3_1:86659379-86659398 None:intergenic 35.0%
AGTGAGGCAAGAATAAATGT+TGG + chr3_1:86659380-86659399 Msa0383660:three_prime_UTR 35.0%
GTGAGGCAAGAATAAATGTT+GGG + chr3_1:86659381-86659400 Msa0383660:three_prime_UTR 35.0%
CAAGCCTATTTGAAAAAAGG+TGG + chr3_1:86659417-86659436 Msa0383660:three_prime_UTR 35.0%
AGTATGAACTGCAGTTATAC+AGG + chr3_1:86659644-86659663 Msa0383660:three_prime_UTR 35.0%
TTAGTATACATGCAAAACCC+GGG + chr3_1:86659722-86659741 Msa0383660:three_prime_UTR 35.0%
TCTGTATCCGATCGATGTTA+TGG + chr3_1:86654519-86654538 Msa0383660:five_prime_UTR 40.0%
AAGAGTCAAGAAGAGTTGGA+TGG - chr3_1:86654576-86654595 None:intergenic 40.0%
! CTCTTTAGAGACCTTTCCTT+AGG + chr3_1:86654625-86654644 Msa0383660:CDS 40.0%
ATCTTTAACGAAGGTGGTGA+TGG - chr3_1:86654679-86654698 None:intergenic 40.0%
GGCATTATCTTTAACGAAGG+TGG - chr3_1:86654685-86654704 None:intergenic 40.0%
GGTGGCATTATCTTTAACGA+AGG - chr3_1:86654688-86654707 None:intergenic 40.0%
AACGATCTCTGAATACCAAG+CGG - chr3_1:86654910-86654929 None:intergenic 40.0%
!!! GCTTTTGGTTTGAAATCTCC+TGG + chr3_1:86654961-86654980 Msa0383660:CDS 40.0%
AGCTTATGAGGAATCAGATG+AGG + chr3_1:86655067-86655086 Msa0383660:CDS 40.0%
GCTTATGAGGAATCAGATGA+GGG + chr3_1:86655068-86655087 Msa0383660:CDS 40.0%
ATTCCAATGCATGTACAGTG+TGG + chr3_1:86655164-86655183 Msa0383660:intron 40.0%
!! TAAGCGTGTGTTTGGCTTTA+CGG - chr3_1:86655605-86655624 None:intergenic 40.0%
TTGTGAACTTCATTGCAGGT+TGG + chr3_1:86655759-86655778 Msa0383660:intron 40.0%
AATACAGTGAATGGCAGAAG+AGG + chr3_1:86655859-86655878 Msa0383660:CDS 40.0%
! GCAGATTATTCATGCTGCTT+TGG + chr3_1:86655965-86655984 Msa0383660:CDS 40.0%
TTATTCTTCCCGGTTTCGAT+GGG - chr3_1:86655996-86656015 None:intergenic 40.0%
CTGTCATGTCTCTTGCAAAT+AGG + chr3_1:86656042-86656061 Msa0383660:CDS 40.0%
CTTGCAAATAGGTCGTATGA+TGG + chr3_1:86656053-86656072 Msa0383660:CDS 40.0%
!! TCTCACTGATTCATGTCACT+GGG + chr3_1:86656079-86656098 Msa0383660:CDS 40.0%
TCATAAATCCGGAGATTCAG+AGG - chr3_1:86656116-86656135 None:intergenic 40.0%
TGGAACAAATCAAGAAGACC+TGG + chr3_1:86656204-86656223 Msa0383660:CDS 40.0%
GGAACAAATCAAGAAGACCT+GGG + chr3_1:86656205-86656224 Msa0383660:CDS 40.0%
GAACAAATCAAGAAGACCTG+GGG + chr3_1:86656206-86656225 Msa0383660:CDS 40.0%
!! TTTCATCGATTTGTTGCCAC+TGG + chr3_1:86656281-86656300 Msa0383660:CDS 40.0%
!! CATTGACTTCGATATTGGGA+TGG + chr3_1:86656411-86656430 Msa0383660:CDS 40.0%
TCGTGGAAACGTTGAAACTA+TGG + chr3_1:86656472-86656491 Msa0383660:CDS 40.0%
TGGAAACGTTGAAACTATGG+AGG + chr3_1:86656475-86656494 Msa0383660:CDS 40.0%
GGAAACGTTGAAACTATGGA+GGG + chr3_1:86656476-86656495 Msa0383660:CDS 40.0%
AGTAAAAGGTGACAAACTCG+AGG + chr3_1:86656686-86656705 Msa0383660:intron 40.0%
TTAAGCACTATTACCATCGC+AGG - chr3_1:86656722-86656741 None:intergenic 40.0%
!! ATTTTGGGTGACTAAGCAAG+TGG + chr3_1:86656879-86656898 Msa0383660:intron 40.0%
!! TTTTGGGTGACTAAGCAAGT+GGG + chr3_1:86656880-86656899 Msa0383660:intron 40.0%
! CAAGGCAAACAAGCTTTATC+AGG + chr3_1:86656949-86656968 Msa0383660:intron 40.0%
! TGTTGAGTTGTGCAAGTAAC+GGG + chr3_1:86656973-86656992 Msa0383660:intron 40.0%
!! CTAGCTTTTCATTAACTGCC+AGG - chr3_1:86657272-86657291 None:intergenic 40.0%
TCAGTCCAATACTCAAGAGA+TGG + chr3_1:86657295-86657314 Msa0383660:CDS 40.0%
CAGTCTGTCTATTCTAGTCT+TGG - chr3_1:86657580-86657599 None:intergenic 40.0%
GAATAGACAGACTGAAAGAC+TGG + chr3_1:86657586-86657605 Msa0383660:CDS 40.0%
TGATAGAAATCTGCAGCAAG+AGG + chr3_1:86657611-86657630 Msa0383660:CDS 40.0%
GCGAATCATAAATGAAACCC+TGG + chr3_1:86658002-86658021 Msa0383660:CDS 40.0%
AAGCTGAAAGAATGCATCCA+GGG - chr3_1:86658022-86658041 None:intergenic 40.0%
! AATGCAGGATGCATTGGTAT+TGG - chr3_1:86658045-86658064 None:intergenic 40.0%
CTTTGGCCACGTAATATTGA+AGG - chr3_1:86658101-86658120 None:intergenic 40.0%
GGCTCAAAATTTCAAGGCTT+TGG + chr3_1:86658293-86658312 Msa0383660:CDS 40.0%
! ACAAATGGGGATAGCTCTTT+TGG + chr3_1:86658368-86658387 Msa0383660:CDS 40.0%
! CAAATGGGGATAGCTCTTTT+GGG + chr3_1:86658369-86658388 Msa0383660:CDS 40.0%
TTTATGCGAACACAGAGTTG+TGG - chr3_1:86658398-86658417 None:intergenic 40.0%
AAATACTTTGCAGTGGATCC+TGG + chr3_1:86658415-86658434 Msa0383660:CDS 40.0%
AATACTTTGCAGTGGATCCT+GGG + chr3_1:86658416-86658435 Msa0383660:CDS 40.0%
! TTGTTTGTATTGCTTGCTGG+AGG + chr3_1:86658785-86658804 Msa0383660:CDS 40.0%
!! AGGTAATGGAATTCTAGACC+TGG - chr3_1:86659029-86659048 None:intergenic 40.0%
ATTCCATTACCTCCAACTTC+CGG + chr3_1:86659037-86659056 Msa0383660:CDS 40.0%
AGTTATTGGAATGGCAAGCT+GGG + chr3_1:86659186-86659205 Msa0383660:three_prime_UTR 40.0%
ATGCATTCTGCTCAAATGTC+TGG + chr3_1:86659211-86659230 Msa0383660:three_prime_UTR 40.0%
TGTCGATCAAGCTTTACTAC+TGG + chr3_1:86659283-86659302 Msa0383660:three_prime_UTR 40.0%
TCAAGCTTTACTACTGGACA+TGG + chr3_1:86659289-86659308 Msa0383660:three_prime_UTR 40.0%
GAAGATTAGAGATGTCTCTG+TGG + chr3_1:86659471-86659490 Msa0383660:three_prime_UTR 40.0%
TAAGGGACAACACAATCCAA+AGG - chr3_1:86659615-86659634 None:intergenic 40.0%
GCTGCTACCATAACATCGAT+CGG - chr3_1:86654529-86654548 None:intergenic 45.0%
GTCAAGAAGAGTTGGATGGA+TGG - chr3_1:86654572-86654591 None:intergenic 45.0%
TCTTGGAATGGCCTAAGGAA+AGG - chr3_1:86654639-86654658 None:intergenic 45.0%
TCTTCTCTTGGAATGGCCTA+AGG - chr3_1:86654644-86654663 None:intergenic 45.0%
GTATTCATCGGAGAGATTGG+TGG - chr3_1:86654755-86654774 None:intergenic 45.0%
! GAGGTATTCATCGGAGAGAT+TGG - chr3_1:86654758-86654777 None:intergenic 45.0%
GAAGATCTCGTAGGCAGTTA+AGG - chr3_1:86654782-86654801 None:intergenic 45.0%
AACTTCTACGGCTGCTAGTA+AGG + chr3_1:86654930-86654949 Msa0383660:CDS 45.0%
GGCTGCTAGTAAGGTTAAGA+AGG + chr3_1:86654939-86654958 Msa0383660:CDS 45.0%
! GGTTTGAAATCTCCTGGTTC+TGG + chr3_1:86654967-86654986 Msa0383660:CDS 45.0%
CTCTTCTTAGAACCAGAACC+AGG - chr3_1:86654982-86655001 None:intergenic 45.0%
!! TCTGGTTCTAAGAAGAGTCC+TGG + chr3_1:86654985-86655004 Msa0383660:CDS 45.0%
TCTAAGAAGAGTCCTGGTTC+TGG + chr3_1:86654991-86655010 Msa0383660:CDS 45.0%
TCGTTTCAATTTCCCCTGAC+CGG - chr3_1:86655031-86655050 None:intergenic 45.0%
TTGAAACGACCGTTAACGGT+TGG + chr3_1:86655042-86655061 Msa0383660:CDS 45.0%
TGAAACGACCGTTAACGGTT+GGG + chr3_1:86655043-86655062 Msa0383660:CDS 45.0%
ATAAGCTCCCCAACCGTTAA+CGG - chr3_1:86655054-86655073 None:intergenic 45.0%
ACACCACACTGTACATGCAT+TGG - chr3_1:86655170-86655189 None:intergenic 45.0%
! CTTCATTGCAGGTTGGAAGA+AGG + chr3_1:86655766-86655785 Msa0383660:intron 45.0%
TGGAAGAAGGATTGAGTCTG+TGG + chr3_1:86655779-86655798 Msa0383660:CDS 45.0%
AGTTGCTGCATTAGCTCAAG+TGG - chr3_1:86655810-86655829 None:intergenic 45.0%
TGAGCTAATGCAGCAACTCA+AGG + chr3_1:86655812-86655831 Msa0383660:CDS 45.0%
AATGCAGCAACTCAAGGCTT+CGG + chr3_1:86655818-86655837 Msa0383660:CDS 45.0%
GCAGAGTTGGACTTATCCAA+AGG - chr3_1:86655930-86655949 None:intergenic 45.0%
GTTATTCTTCCCGGTTTCGA+TGG - chr3_1:86655997-86656016 None:intergenic 45.0%
CATGGACTCGTTATTCTTCC+CGG - chr3_1:86656006-86656025 None:intergenic 45.0%
GAAGAATAACGAGTCCATGC+AGG + chr3_1:86656007-86656026 Msa0383660:CDS 45.0%
AGAACTACGAAGAACCTGCA+TGG - chr3_1:86656024-86656043 None:intergenic 45.0%
!! CTCTCACTGATTCATGTCAC+TGG + chr3_1:86656078-86656097 Msa0383660:CDS 45.0%
ATTCATGTCACTGGGCAGAT+GGG + chr3_1:86656087-86656106 Msa0383660:CDS 45.0%
ATGGGATTCCTCTGAATCTC+CGG + chr3_1:86656105-86656124 Msa0383660:CDS 45.0%
AAGAAGACCTGGGGAATACT+TGG + chr3_1:86656215-86656234 Msa0383660:CDS 45.0%
GTTCAATCCAAGTATTCCCC+AGG - chr3_1:86656225-86656244 None:intergenic 45.0%
ACAGAAGCTCCAAATCCATC+TGG - chr3_1:86656307-86656326 None:intergenic 45.0%
! CTTTTGCAACTTCAGCTAGC+TGG - chr3_1:86656343-86656362 None:intergenic 45.0%
TATTGGGATGGGCAGAGAAA+AGG + chr3_1:86656423-86656442 Msa0383660:CDS 45.0%
!! ATGGAGGGCATTGTCTCTTT+AGG + chr3_1:86656491-86656510 Msa0383660:CDS 45.0%
!! TGGAGGGCATTGTCTCTTTA+GGG + chr3_1:86656492-86656511 Msa0383660:CDS 45.0%
AGCGGCTAAGATATTGCTTG+AGG + chr3_1:86656520-86656539 Msa0383660:CDS 45.0%
AGGTTTATCATCTCCTGCGA+TGG + chr3_1:86656706-86656725 Msa0383660:intron 45.0%
TTTGCAAGAATGGCAAGGAG+GGG - chr3_1:86657237-86657256 None:intergenic 45.0%
CTTTGCAAGAATGGCAAGGA+GGG - chr3_1:86657238-86657257 None:intergenic 45.0%
CATCCTTTGCAAGAATGGCA+AGG - chr3_1:86657242-86657261 None:intergenic 45.0%
GCCATTCTTGCAAAGGATGT+AGG + chr3_1:86657243-86657262 Msa0383660:CDS 45.0%
GCCTACATCCTTTGCAAGAA+TGG - chr3_1:86657247-86657266 None:intergenic 45.0%
GGATGCCATCTCTTGAGTAT+TGG - chr3_1:86657303-86657322 None:intergenic 45.0%
ACTCAAGAGATGGCATCCTT+TGG + chr3_1:86657305-86657324 Msa0383660:CDS 45.0%
GTTTCCATAGCATGCATGGA+GGG - chr3_1:86657352-86657371 None:intergenic 45.0%
ACTCGTTTCCATAGCATGCA+TGG - chr3_1:86657356-86657375 None:intergenic 45.0%
TTTAAGAGCTGCAGACCAGT+TGG + chr3_1:86657428-86657447 Msa0383660:CDS 45.0%
GATAGCTGTTGAGGATTCAG+TGG + chr3_1:86657467-86657486 Msa0383660:CDS 45.0%
GATTCAGTGGACAGTGATGA+TGG + chr3_1:86657480-86657499 Msa0383660:CDS 45.0%
ATTGCACCTTCTGCTTCGTA+AGG - chr3_1:86657534-86657553 None:intergenic 45.0%
CGCAGAACTTCAACAGAAGA+TGG - chr3_1:86657985-86658004 None:intergenic 45.0%
GAAGCTGAAAGAATGCATCC+AGG - chr3_1:86658023-86658042 None:intergenic 45.0%
ATCACTTCAGGAAGCAATGC+AGG - chr3_1:86658060-86658079 None:intergenic 45.0%
TTGCTTCCTGAAGTGATGCA+TGG + chr3_1:86658063-86658082 Msa0383660:CDS 45.0%
TACGTGGCCAAAGCTAAATC+TGG + chr3_1:86658108-86658127 Msa0383660:CDS 45.0%
! ACCACAGCCAGATTTAGCTT+TGG - chr3_1:86658118-86658137 None:intergenic 45.0%
TTCTCAGAAGAGAAACTCGC+AGG + chr3_1:86658340-86658359 Msa0383660:CDS 45.0%
AACTCGCAGGTTGCAACAAA+TGG + chr3_1:86658353-86658372 Msa0383660:CDS 45.0%
ACTCGCAGGTTGCAACAAAT+GGG + chr3_1:86658354-86658373 Msa0383660:CDS 45.0%
CCAGAACATCAAATTCACCC+AGG - chr3_1:86658436-86658455 None:intergenic 45.0%
CCTGGGTGAATTTGATGTTC+TGG + chr3_1:86658433-86658452 Msa0383660:CDS 45.0%
CTGAATTCCTTCAAGACACG+CGG - chr3_1:86658552-86658571 None:intergenic 45.0%
AGGAATTCAGCAGCTATGTG+AGG + chr3_1:86658562-86658581 Msa0383660:CDS 45.0%
GGATCAATCCTGGAAGATGA+GGG - chr3_1:86658656-86658675 None:intergenic 45.0%
CTGAAGAAACGGATCAATCC+TGG - chr3_1:86658666-86658685 None:intergenic 45.0%
CAGGATTGATCCGTTTCTTC+AGG + chr3_1:86658664-86658683 Msa0383660:CDS 45.0%
CGCTCAAGTTCCTGAAGAAA+CGG - chr3_1:86658677-86658696 None:intergenic 45.0%
!! AAGGAGCTGTTTTGGGCAAA+TGG + chr3_1:86658869-86658888 Msa0383660:CDS 45.0%
!! AGGAGCTGTTTTGGGCAAAT+GGG + chr3_1:86658870-86658889 Msa0383660:CDS 45.0%
GCCTCATTGAGCAGTTTAGA+CGG + chr3_1:86658975-86658994 Msa0383660:CDS 45.0%
TCCGTCTAAACTGCTCAATG+AGG - chr3_1:86658979-86658998 None:intergenic 45.0%
CAGCTTGCCATTCCAATAAC+TGG - chr3_1:86659187-86659206 None:intergenic 45.0%
CAGTTATTGGAATGGCAAGC+TGG + chr3_1:86659185-86659204 Msa0383660:three_prime_UTR 45.0%
GGCAAGGTCGTACTAAATAC+AGG - chr3_1:86659242-86659261 None:intergenic 45.0%
GATAAATTACCTGCTGGGCA+AGG - chr3_1:86659258-86659277 None:intergenic 45.0%
TACACTGAGAACATTGGCCA+AGG + chr3_1:86659323-86659342 Msa0383660:three_prime_UTR 45.0%
ACACTGAGAACATTGGCCAA+GGG + chr3_1:86659324-86659343 Msa0383660:three_prime_UTR 45.0%
! TTTCTTTCGAGTCCGAAGTG+AGG + chr3_1:86659364-86659383 Msa0383660:three_prime_UTR 45.0%
TGGTGGAAAGTTGACCGAGT+GGG - chr3_1:86654738-86654757 None:intergenic 50.0%
TTGGTGGAAAGTTGACCGAG+TGG - chr3_1:86654739-86654758 None:intergenic 50.0%
TCTCGTAGGCAGTTAAGGTG+AGG - chr3_1:86654777-86654796 None:intergenic 50.0%
ACCAGAAGAGGTTCGACATG+CGG - chr3_1:86654809-86654828 None:intergenic 50.0%
ACTGAGAGGCTTACCAGAAG+AGG - chr3_1:86654821-86654840 None:intergenic 50.0%
GAAACGACCGTTAACGGTTG+GGG + chr3_1:86655044-86655063 Msa0383660:CDS 50.0%
TAACGGTTGGGGAGCTTATG+AGG + chr3_1:86655055-86655074 Msa0383660:CDS 50.0%
!! GATGAGGGTTTCTGAAGCCA+TGG + chr3_1:86655083-86655102 Msa0383660:CDS 50.0%
GCGTTGCTCAGAATTTCTGC+TGG + chr3_1:86655123-86655142 Msa0383660:CDS 50.0%
GCTCAGAATTTCTGCTGGAC+AGG + chr3_1:86655128-86655147 Msa0383660:CDS 50.0%
ATGGCAGAAGAGGACTCTCA+AGG + chr3_1:86655869-86655888 Msa0383660:CDS 50.0%
GAAGAGGACTCTCAAGGTTC+TGG + chr3_1:86655875-86655894 Msa0383660:CDS 50.0%
TTGGATAGGCCCATCGAAAC+CGG + chr3_1:86655984-86656003 Msa0383660:CDS 50.0%
GATTCATGTCACTGGGCAGA+TGG + chr3_1:86656086-86656105 Msa0383660:CDS 50.0%
! ATTTGTTGCCACTGGCCAGA+TGG + chr3_1:86656289-86656308 Msa0383660:CDS 50.0%
GAGCTTCTGTCTGATGCTGA+TGG + chr3_1:86656317-86656336 Msa0383660:CDS 50.0%
!! GGAGGGCATTGTCTCTTTAG+GGG + chr3_1:86656493-86656512 Msa0383660:CDS 50.0%
! TGTCTCTTTAGGGGTAGCAG+CGG + chr3_1:86656502-86656521 Msa0383660:CDS 50.0%
!! TCTACGTACTGCTTTTGCCC+AGG + chr3_1:86656625-86656644 Msa0383660:CDS 50.0%
TGGAGAAAGCAGACTCAAGC+AGG + chr3_1:86657181-86657200 Msa0383660:CDS 50.0%
AGAAAGCAGACTCAAGCAGG+AGG + chr3_1:86657184-86657203 Msa0383660:CDS 50.0%
GAAAGCAGACTCAAGCAGGA+GGG + chr3_1:86657185-86657204 Msa0383660:CDS 50.0%
TTGCAAGAATGGCAAGGAGG+GGG - chr3_1:86657236-86657255 None:intergenic 50.0%
CCTTTGCAAGAATGGCAAGG+AGG - chr3_1:86657239-86657258 None:intergenic 50.0%
CCTCCTTGCCATTCTTGCAA+AGG + chr3_1:86657236-86657255 Msa0383660:CDS 50.0%
CGTTTCCATAGCATGCATGG+AGG - chr3_1:86657353-86657372 None:intergenic 50.0%
GCACAAGGTCTTTCTCCAAC+TGG - chr3_1:86657446-86657465 None:intergenic 50.0%
CCTCAACAGCTATCTGCACA+AGG - chr3_1:86657461-86657480 None:intergenic 50.0%
CCTTGTGCAGATAGCTGTTG+AGG + chr3_1:86657458-86657477 Msa0383660:CDS 50.0%
!! TCAGTGGACAGTGATGATGG+TGG + chr3_1:86657483-86657502 Msa0383660:CDS 50.0%
ATGCCTCCTTACGAAGCAGA+AGG + chr3_1:86657525-86657544 Msa0383660:CDS 50.0%
TGCTTGTGGACTCCAAAGCT+AGG - chr3_1:86657944-86657963 None:intergenic 50.0%
GGAAGCAATGCAGGATGCAT+TGG - chr3_1:86658051-86658070 None:intergenic 50.0%
TCTACGCCATGCATCACTTC+AGG - chr3_1:86658072-86658091 None:intergenic 50.0%
GCCAAAGCTAAATCTGGCTG+TGG + chr3_1:86658114-86658133 Msa0383660:CDS 50.0%
ATAGTGCATCTCGTCAGTGC+CGG - chr3_1:86658272-86658291 None:intergenic 50.0%
! GCACTGACGAGATGCACTAT+TGG + chr3_1:86658272-86658291 Msa0383660:CDS 50.0%
CTCGCAGGTTGCAACAAATG+GGG + chr3_1:86658355-86658374 Msa0383660:CDS 50.0%
TTGGAGATCCCTCATCTTCC+AGG + chr3_1:86658645-86658664 Msa0383660:CDS 50.0%
CGGATCAATCCTGGAAGATG+AGG - chr3_1:86658657-86658676 None:intergenic 50.0%
!! GGAGCTGTTTTGGGCAAATG+GGG + chr3_1:86658871-86658890 Msa0383660:CDS 50.0%
!! CTGTTTTGGGCAAATGGGGA+CGG + chr3_1:86658875-86658894 Msa0383660:CDS 50.0%
ACAGGTTTGCAACTACCCTG+AGG + chr3_1:86658918-86658937 Msa0383660:CDS 50.0%
AAGGGGAAGGATAGACCTCA+GGG - chr3_1:86658936-86658955 None:intergenic 50.0%
AAAGGGGAAGGATAGACCTC+AGG - chr3_1:86658937-86658956 None:intergenic 50.0%
! GGTCTATCCTTCCCCTTTTC+AGG + chr3_1:86658939-86658958 Msa0383660:CDS 50.0%
! TCTGTGTCGGTCCTGAAAAG+GGG - chr3_1:86658953-86658972 None:intergenic 50.0%
! CTCTGTGTCGGTCCTGAAAA+GGG - chr3_1:86658954-86658973 None:intergenic 50.0%
! TCTCTGTGTCGGTCCTGAAA+AGG - chr3_1:86658955-86658974 None:intergenic 50.0%
CTCAATGAGGCTCTCTGTGT+CGG - chr3_1:86658966-86658985 None:intergenic 50.0%
TGTCCGGAAGTTGGAGGTAA+TGG - chr3_1:86659043-86659062 None:intergenic 50.0%
GAAAGTTGACCGAGTGGGGA+GGG - chr3_1:86654733-86654752 None:intergenic 55.0%
GGTGGAAAGTTGACCGAGTG+GGG - chr3_1:86654737-86654756 None:intergenic 55.0%
!! CCTGGTTCTGGTTCTGCTTC+CGG + chr3_1:86655003-86655022 Msa0383660:CDS 55.0%
!! TCTGGTTCTGCTTCCGGTTC+CGG + chr3_1:86655009-86655028 Msa0383660:CDS 55.0%
CAATTTCCCCTGACCGGAAC+CGG - chr3_1:86655025-86655044 None:intergenic 55.0%
ACGTCTCACACGCGAATCCA+TGG - chr3_1:86655103-86655122 None:intergenic 55.0%
! GAGGACTCTCAAGGTTCTGG+AGG + chr3_1:86655878-86655897 Msa0383660:CDS 55.0%
!! ACTCTCAAGGTTCTGGAGGC+TGG + chr3_1:86655882-86655901 Msa0383660:CDS 55.0%
TGGATAGGCCCATCGAAACC+GGG + chr3_1:86655985-86656004 Msa0383660:CDS 55.0%
! TGCCACTGGCCAGATGGATT+TGG + chr3_1:86656295-86656314 Msa0383660:CDS 55.0%
CTCCAAATCCATCTGGCCAG+TGG - chr3_1:86656300-86656319 None:intergenic 55.0%
GCTATTGCACGGATGCACCT+AGG - chr3_1:86657018-86657037 None:intergenic 55.0%
TGCAAAGGATGTAGGCAGCC+TGG + chr3_1:86657251-86657270 Msa0383660:CDS 55.0%
AGATGGCATCCTTTGGCAGC+AGG + chr3_1:86657312-86657331 Msa0383660:CDS 55.0%
ACAGCAAGACCTGCTGCCAA+AGG - chr3_1:86657324-86657343 None:intergenic 55.0%
TTTGGCAGCAGGTCTTGCTG+TGG + chr3_1:86657323-86657342 Msa0383660:CDS 55.0%
GCTACCCTCCATGCATGCTA+TGG + chr3_1:86657345-86657364 Msa0383660:CDS 55.0%
GCACCTTCTGCTTCGTAAGG+AGG - chr3_1:86657531-86657550 None:intergenic 55.0%
ATTCCTTCAAGACACGCGGC+TGG - chr3_1:86658548-86658567 None:intergenic 55.0%
TTCCGGGAAAAAGCCCGAGA+GGG - chr3_1:86658812-86658831 None:intergenic 55.0%
TGTCGGTCCTGAAAAGGGGA+AGG - chr3_1:86658949-86658968 None:intergenic 55.0%
TACCTCCAACTTCCGGACAG+TGG + chr3_1:86659044-86659063 Msa0383660:CDS 55.0%
ACCTCCAACTTCCGGACAGT+GGG + chr3_1:86659045-86659064 Msa0383660:CDS 55.0%
ATCAGATGGACCCCACTGTC+CGG - chr3_1:86659059-86659078 None:intergenic 55.0%
TTAGTACGACCTTGCCCAGC+AGG + chr3_1:86659246-86659265 Msa0383660:three_prime_UTR 55.0%
GAGAACATTGGCCAAGGGCT+TGG + chr3_1:86659329-86659348 Msa0383660:three_prime_UTR 55.0%
GAGTGGGGAGGGAAGATCGT+CGG - chr3_1:86654722-86654741 None:intergenic 60.0%
GACGATCTTCCCTCCCCACT+CGG + chr3_1:86654721-86654740 Msa0383660:CDS 60.0%
GGAAAGTTGACCGAGTGGGG+AGG - chr3_1:86654734-86654753 None:intergenic 60.0%
TGCGGCGACGAAGATCTCGT+AGG - chr3_1:86654791-86654810 None:intergenic 60.0%
GCCGCATGTCGAACCTCTTC+TGG + chr3_1:86654805-86654824 Msa0383660:CDS 60.0%
! CCAAGCGGCGAGTTCTGACT+CGG - chr3_1:86654895-86654914 None:intergenic 60.0%
CCGGAAGCAGAACCAGAACC+AGG - chr3_1:86655006-86655025 None:intergenic 60.0%
TTCTGCTTCCGGTTCCGGTC+AGG + chr3_1:86655014-86655033 Msa0383660:CDS 60.0%
TCTGCTTCCGGTTCCGGTCA+GGG + chr3_1:86655015-86655034 Msa0383660:CDS 60.0%
AGTCCAACTCTGCTGCGCAG+CGG + chr3_1:86655937-86655956 Msa0383660:CDS 60.0%
!! GCAAGGAGGGGGAGAGCATT+TGG - chr3_1:86657225-86657244 None:intergenic 60.0%
!! CTCGTCAGTGCCGGCATTGT+TGG - chr3_1:86658263-86658282 None:intergenic 60.0%
TCTCCAGCCGCGTGTCTTGA+AGG + chr3_1:86658542-86658561 Msa0383660:CDS 60.0%
TCCGGGAAAAAGCCCGAGAG+GGG - chr3_1:86658811-86658830 None:intergenic 60.0%
CTTCCGGGAAAAAGCCCGAG+AGG - chr3_1:86658813-86658832 None:intergenic 60.0%
!! CTCTCGGGCTTTTTCCCGGA+AGG + chr3_1:86658811-86658830 Msa0383660:CDS 60.0%
CCTCCAACTTCCGGACAGTG+GGG + chr3_1:86659046-86659065 Msa0383660:CDS 60.0%
TGCCAGTAGCACCAAGCCCT+TGG - chr3_1:86659343-86659362 None:intergenic 60.0%
GGAAGATCGTCGGCGGTAGG+CGG - chr3_1:86654712-86654731 None:intergenic 65.0%
GAGGGAAGATCGTCGGCGGT+AGG - chr3_1:86654715-86654734 None:intergenic 65.0%
TGGGGAGGGAAGATCGTCGG+CGG - chr3_1:86654719-86654738 None:intergenic 65.0%
CCGAGTCAGAACTCGCCGCT+TGG + chr3_1:86654892-86654911 Msa0383660:CDS 65.0%
CTGCTTCCGGTTCCGGTCAG+GGG + chr3_1:86655016-86655035 Msa0383660:CDS 65.0%
!! GGAGGGGGAGAGCATTTGGC+TGG - chr3_1:86657221-86657240 None:intergenic 65.0%
! TGCTTGCTGGAGGCCCCTCT+CGG + chr3_1:86658795-86658814 Msa0383660:CDS 65.0%
!! GCCCCTCTCGGGCTTTTTCC+CGG + chr3_1:86658807-86658826 Msa0383660:CDS 65.0%
CCCCACTGTCCGGAAGTTGG+AGG - chr3_1:86659049-86659068 None:intergenic 65.0%
GGACCCCACTGTCCGGAAGT+TGG - chr3_1:86659052-86659071 None:intergenic 65.0%
!! GGCCAAGGGCTTGGTGCTAC+TGG + chr3_1:86659338-86659357 Msa0383660:three_prime_UTR 65.0%
AGATCGTCGGCGGTAGGCGG+TGG - chr3_1:86654709-86654728 None:intergenic 70.0%
CAGCCGCTGCGCAGCAGAGT+TGG - chr3_1:86655943-86655962 None:intergenic 70.0%
ACTCTGCTGCGCAGCGGCTG+CGG + chr3_1:86655943-86655962 Msa0383660:CDS 70.0%
! GCTTGCTGGAGGCCCCTCTC+GGG + chr3_1:86658796-86658815 Msa0383660:CDS 70.0%
TCGTCGGCGGTAGGCGGTGG+TGG - chr3_1:86654706-86654725 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 86654464 86659759 86654464 ID=Msa0383660;Name=Msa0383660
chr3_1 mRNA 86654464 86659759 86654464 ID=Msa0383660-mRNA-1;Parent=Msa0383660;Name=Msa0383660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=149|1|1|1|1|1|5|588|994
chr3_1 exon 86654464 86655149 86654464 ID=Msa0383660-mRNA-1:exon:22941;Parent=Msa0383660-mRNA-1
chr3_1 exon 86655777 86656646 86655777 ID=Msa0383660-mRNA-1:exon:22942;Parent=Msa0383660-mRNA-1
chr3_1 exon 86657177 86657632 86657177 ID=Msa0383660-mRNA-1:exon:22943;Parent=Msa0383660-mRNA-1
chr3_1 exon 86657946 86658135 86657946 ID=Msa0383660-mRNA-1:exon:22944;Parent=Msa0383660-mRNA-1
chr3_1 exon 86658240 86659759 86658240 ID=Msa0383660-mRNA-1:exon:22945;Parent=Msa0383660-mRNA-1
chr3_1 five_prime_UTR 86654464 86654612 86654464 ID=Msa0383660-mRNA-1:five_prime_utr;Parent=Msa0383660-mRNA-1
chr3_1 CDS 86654613 86655149 86654613 ID=Msa0383660-mRNA-1:cds;Parent=Msa0383660-mRNA-1
chr3_1 CDS 86655777 86656646 86655777 ID=Msa0383660-mRNA-1:cds;Parent=Msa0383660-mRNA-1
chr3_1 CDS 86657177 86657632 86657177 ID=Msa0383660-mRNA-1:cds;Parent=Msa0383660-mRNA-1
chr3_1 CDS 86657946 86658135 86657946 ID=Msa0383660-mRNA-1:cds;Parent=Msa0383660-mRNA-1
chr3_1 CDS 86658240 86659171 86658240 ID=Msa0383660-mRNA-1:cds;Parent=Msa0383660-mRNA-1
chr3_1 three_prime_UTR 86659172 86659759 86659172 ID=Msa0383660-mRNA-1:three_prime_utr;Parent=Msa0383660-mRNA-1
Gene Sequence

>Msa0383660

ATGGCTGCTCAACTCTTTAGAGACCTTTCCTTAGGCCATTCCAAGAGAAGAGATTCAACAACACCATCACCACCTTCGTTAAAGATAATGCCACCACCGCCTACCGCCGACGATCTTCCCTCCCCACTCGGTCAACTTTCCACCAATCTCTCCGATGAATACCTCACCTTAACTGCCTACGAGATCTTCGTCGCCGCATGTCGAACCTCTTCTGGTAAGCCTCTCAGTTCATCAATTGCTAACTCCTCTTCCAACAACAATAATAGTCATTCTGACTCACCGAGTCAGAACTCGCCGCTTGGTATTCAGAGATCGTTAACTTCTACGGCTGCTAGTAAGGTTAAGAAGGCTTTTGGTTTGAAATCTCCTGGTTCTGGTTCTAAGAAGAGTCCTGGTTCTGGTTCTGCTTCCGGTTCCGGTCAGGGGAAATTGAAACGACCGTTAACGGTTGGGGAGCTTATGAGGAATCAGATGAGGGTTTCTGAAGCCATGGATTCGCGTGTGAGACGTGCGTTGCTCAGAATTTCTGCTGGACAGGTTGGAAGAAGGATTGAGTCTGTGGTTGTTCCACTTGAGCTAATGCAGCAACTCAAGGCTTCGGATTTTACTGATCAACAAGAATACAGTGAATGGCAGAAGAGGACTCTCAAGGTTCTGGAGGCTGGTCTAATTTTGCATCCTTACATACCTTTGGATAAGTCCAACTCTGCTGCGCAGCGGCTGCGGCAGATTATTCATGCTGCTTTGGATAGGCCCATCGAAACCGGGAAGAATAACGAGTCCATGCAGGTTCTTCGTAGTTCTGTCATGTCTCTTGCAAATAGGTCGTATGATGGATCTCTCACTGATTCATGTCACTGGGCAGATGGGATTCCTCTGAATCTCCGGATTTATGAAATGCTTCTACAATCTTGCTTTGATGTTAATGATGAATCGTCAATTATTGAAGATTTTGATGAGCTAATGGAACAAATCAAGAAGACCTGGGGAATACTTGGATTGAACCAGACGTATCATAATCTCTGTTTTACTTGGGTTTTATTTCATCGATTTGTTGCCACTGGCCAGATGGATTTGGAGCTTCTGTCTGATGCTGATGGCCAGCTAGCTGAAGTTGCAAAAGACGCAAAGACAACCAAAGATTCCGAGTATTCCAAAATTTTGAGTTCTACATTGACTTCGATATTGGGATGGGCAGAGAAAAGGCTTCTTGCATACCATGAAACTTTTGATCGTGGAAACGTTGAAACTATGGAGGGCATTGTCTCTTTAGGGGTAGCAGCGGCTAAGATATTGCTTGAGGATATATCTAATGAATATCGTCGGAGGAGAAGAAATGAAGTCAATGTTGCCCGAGAAAGAATTGAAACGTACATCAGGTCATCTCTACGTACTGCTTTTGCCCAGATAATGGAGAAAGCAGACTCAAGCAGGAGGGCATCAAGAAACCAGCCAAATGCTCTCCCCCTCCTTGCCATTCTTGCAAAGGATGTAGGCAGCCTGGCAGTTAATGAAAAGCTAGTGTTCAGTCCAATACTCAAGAGATGGCATCCTTTGGCAGCAGGTCTTGCTGTGGCTACCCTCCATGCATGCTATGGAAACGAGTTGAAGCAATTCATTTCAGGTATCACAGAATTGACCCCTGATGCTGTTCAAGTTTTAAGAGCTGCAGACCAGTTGGAGAAAGACCTTGTGCAGATAGCTGTTGAGGATTCAGTGGACAGTGATGATGGTGGCAAAGCAATAATTCGCGAGATGCCTCCTTACGAAGCAGAAGGTGCAATTGCGAATCTCGTGAAAATATGGACCAAGACTAGAATAGACAGACTGAAAGACTGGGTTGATAGAAATCTGCAGCAAGAGCTTTGGAGTCCACAAGCAAATCAGGAAGGATACGCTCCATCTTCTGTTGAAGTTCTGCGAATCATAAATGAAACCCTGGATGCATTCTTTCAGCTTCCAATACCAATGCATCCTGCATTGCTTCCTGAAGTGATGCATGGCGTAGATAGATGCCTTCAATATTACGTGGCCAAAGCTAAATCTGGCTGTGGATCTCGAAATACATTTATTCCAACAATGCCGGCACTGACGAGATGCACTATTGGCTCAAAATTTCAAGGCTTTGGGAAGAAAAAAGATAAATCTCCAAATTCTCAGAAGAGAAACTCGCAGGTTGCAACAAATGGGGATAGCTCTTTTGGGATACCACAACTCTGTGTTCGCATAAATACTTTGCAGTGGATCCTGGGTGAATTTGATGTTCTGGAAAAAAGAATAATTACTCTTTTACGGAACTCAGAATCTGCCAGAGAAGAAGATTTTTCAAACGGATTAGCTAGTAAGTTTGAACTATCTCCAGCCGCGTGTCTTGAAGGAATTCAGCAGCTATGTGAGGCTGCAGCATATAGAATTGTCTTCCATGATCTAAGCCATGTTTTATGGGATAGTTTGTATGTTGGAGATCCCTCATCTTCCAGGATTGATCCGTTTCTTCAGGAACTTGAGCGAAACTTAATGTTCATTTCAGACAATGTTCATGAAAAAATTCGCACACGCATTATTACTGAAATAATGAGAGCTTCCTTTGATGGATTCTTGTTTGTATTGCTTGCTGGAGGCCCCTCTCGGGCTTTTTCCCGGAAGGATTCACAAATCATAGAGGATGATTTCAAAGTTCTAAAGGAGCTGTTTTGGGCAAATGGGGACGGCTTGCCTTCTGAAATAATAGACAGGTTTGCAACTACCCTGAGGTCTATCCTTCCCCTTTTCAGGACCGACACAGAGAGCCTCATTGAGCAGTTTAGACGGATAACAGTTGAGACATATAAATCTTCTGCCAGGTCTAGAATTCCATTACCTCCAACTTCCGGACAGTGGGGTCCATCTGATCCAAATACATTATTACGTGTTTTATGCTATAGAAATGATGAAGCAGCTTCAAAGTTTCTTAAAAAGACATATGATCTCCCTAAGAAACTTTAA
Protein sequence

>Msa0383660

MAAQLFRDLSLGHSKRRDSTTPSPPSLKIMPPPPTADDLPSPLGQLSTNLSDEYLTLTAYEIFVAACRTSSGKPLSSSIANSSSNNNNSHSDSPSQNSPLGIQRSLTSTAASKVKKAFGLKSPGSGSKKSPGSGSASGSGQGKLKRPLTVGELMRNQMRVSEAMDSRVRRALLRISAGQVGRRIESVVVPLELMQQLKASDFTDQQEYSEWQKRTLKVLEAGLILHPYIPLDKSNSAAQRLRQIIHAALDRPIETGKNNESMQVLRSSVMSLANRSYDGSLTDSCHWADGIPLNLRIYEMLLQSCFDVNDESSIIEDFDELMEQIKKTWGILGLNQTYHNLCFTWVLFHRFVATGQMDLELLSDADGQLAEVAKDAKTTKDSEYSKILSSTLTSILGWAEKRLLAYHETFDRGNVETMEGIVSLGVAAAKILLEDISNEYRRRRRNEVNVARERIETYIRSSLRTAFAQIMEKADSSRRASRNQPNALPLLAILAKDVGSLAVNEKLVFSPILKRWHPLAAGLAVATLHACYGNELKQFISGITELTPDAVQVLRAADQLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKIWTKTRIDRLKDWVDRNLQQELWSPQANQEGYAPSSVEVLRIINETLDAFFQLPIPMHPALLPEVMHGVDRCLQYYVAKAKSGCGSRNTFIPTMPALTRCTIGSKFQGFGKKKDKSPNSQKRNSQVATNGDSSFGIPQLCVRINTLQWILGEFDVLEKRIITLLRNSESAREEDFSNGLASKFELSPAACLEGIQQLCEAAAYRIVFHDLSHVLWDSLYVGDPSSSRIDPFLQELERNLMFISDNVHEKIRTRIITEIMRASFDGFLFVLLAGGPSRAFSRKDSQIIEDDFKVLKELFWANGDGLPSEIIDRFATTLRSILPLFRTDTESLIEQFRRITVETYKSSARSRIPLPPTSGQWGPSDPNTLLRVLCYRNDEAASKFLKKTYDLPKKL*