AlfalfaGEDB | Msa0425310

M. sativa cultivar zhongmu-4 / Msa0425310

KEGG: -
GO: GO:0003674 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0019867 GO:0019899 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0038023 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051716 GO:0060089 GO:0065007 GO:0098588 GO:0098805
PFAM: PF05631.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0425310	XP_003602305.1	99.346	459	3	0	1	459	1	459	0.0	930

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0425310	sp\|Q6N075\|MFSD5_HUMAN	35.294	459	270	11	6	456	6	445	5.42e-73	239

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0425310	G7J858	99.346	459	3	0	1	459	1	459	0.0	930

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0287640	Msa0425310	0.801574	8.443933e-49	-8.615850e-47
Msa0383660	Msa0425310	0.807606	4.657117e-50	-8.615850e-47
Msa0425310	Msa0427760	0.801204	1.005209e-48	-8.615850e-47
Msa0425310	Msa0427950	0.800412	1.458739e-48	-8.615850e-47
Msa0425310	Msa0521890	0.825013	5.909238e-54	-8.615850e-47
Msa0425310	Msa0558720	0.840854	6.767367e-58	-8.615850e-47
Msa0425310	Msa0748740	0.813019	3.163761e-51	-8.615850e-47
Msa0425310	Msa0799450	0.803841	2.874825e-49	-8.615850e-47
Msa0425310	Msa1215930	0.812894	3.369872e-51	-8.615850e-47
Msa0425310	Msa1257720	0.801050	1.080959e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0425310	MtrunA17_Chr3g0127341	99.346	459	3	0	1	459	1	459	0.0	930
Msa0425310	MtrunA17_Chr5g0401471	27.078	373	240	7	32	397	47	394	1.59e-32	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0425310	AT4G27720.1	85.000	460	68	1	1	459	1	460	0.0	818
Msa0425310	AT3G49310.1	81.739	460	83	1	1	459	1	460	0.0	793
Msa0425310	AT1G64650.1	81.345	461	83	2	1	458	1	461	0.0	790
Msa0425310	AT1G64650.2	81.068	412	75	2	50	458	9	420	0.0	704
Msa0425310	AT2G23093.1	25.517	435	273	13	30	446	46	447	4.06e-21	95.9
Msa0425310	AT2G23093.2	25.250	400	248	13	65	446	14	380	3.74e-19	89.4

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Find 138 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGCAGCAGCGTCAA+AGG	0.480550	3_2:+75701328	None:intergenic
AAACCTGCAGCAGCGTCAAA+GGG	0.457365	3_2:+75701329	None:intergenic
AAAGTTCATGATGGTGCTCC+TGG	0.400456	3_2:+75700403	None:intergenic
AAAGTTGTGTTGGCATATTC+TGG	0.280683	3_2:-75700469	Msa0425310:CDS
AAATGTCCTTGTTGATACAT+TGG	0.532054	3_2:-75701369	Msa0425310:CDS
AACAGAAGATTGGCAACTCA+AGG	0.548096	3_2:-75699399	Msa0425310:CDS
AACATCAAGACTCTGTATTG+AGG	0.584283	3_2:+75702586	None:intergenic
AACCTGCAGCAGCGTCAAAG+GGG	0.643247	3_2:+75701330	None:intergenic
AACTCCTTCACTTGGTTGGT+GGG	0.364271	3_2:+75699233	None:intergenic
AACTCTTCATTGCTGGATTT+GGG	0.263781	3_2:-75702813	Msa0425310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTAAGATTTGTGTGAGA+TGG	+	chr3_2:75699128-75699147	None:intergenic	30.0%
GAGAAGATAATTGTTCTTGA+AGG	+	chr3_2:75699325-75699344	None:intergenic	30.0%
TCTCATTTATTCTCTCATGA+TGG	-	chr3_2:75699341-75699360	Msa0425310:three_prime_UTR	30.0%
CTCATTTATTCTCTCATGAT+GGG	-	chr3_2:75699342-75699361	Msa0425310:three_prime_UTR	30.0%
GAGTAAAAATCACAACTTCA+AGG	+	chr3_2:75699693-75699712	None:intergenic	30.0%
CTGTATAGGTAGTAAACATA+TGG	+	chr3_2:75700121-75700140	None:intergenic	30.0%
AAAATGCTACGACATATGTA+TGG	+	chr3_2:75700281-75700300	None:intergenic	30.0%
TATGATTACTTTATACACGC+AGG	-	chr3_2:75700561-75700580	Msa0425310:intron	30.0%
TAGTTATTATAAGTACCACG+AGG	-	chr3_2:75700664-75700683	Msa0425310:intron	30.0%
AGATGTGGATCATTATGTTT+AGG	-	chr3_2:75700873-75700892	Msa0425310:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	75698925	75704083	75698925	ID=Msa0425310;Name=Msa0425310
chr3_2	mRNA	75698925	75704083	75698925	ID=Msa0425310-mRNA-1;Parent=Msa0425310;Name=Msa0425310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=288\|1\|1\|1\|1\|1\|8\|439\|459
chr3_2	exon	75698925	75699422	75698925	ID=Msa0425310-mRNA-1:exon:19447;Parent=Msa0425310-mRNA-1
chr3_2	exon	75699925	75700027	75699925	ID=Msa0425310-mRNA-1:exon:19446;Parent=Msa0425310-mRNA-1
chr3_2	exon	75700358	75700573	75700358	ID=Msa0425310-mRNA-1:exon:19445;Parent=Msa0425310-mRNA-1
chr3_2	exon	75700673	75700938	75700673	ID=Msa0425310-mRNA-1:exon:19444;Parent=Msa0425310-mRNA-1
chr3_2	exon	75701213	75701483	75701213	ID=Msa0425310-mRNA-1:exon:19443;Parent=Msa0425310-mRNA-1
chr3_2	exon	75702507	75702675	75702507	ID=Msa0425310-mRNA-1:exon:19442;Parent=Msa0425310-mRNA-1
chr3_2	exon	75702766	75702910	75702766	ID=Msa0425310-mRNA-1:exon:19441;Parent=Msa0425310-mRNA-1
chr3_2	exon	75703645	75704083	75703645	ID=Msa0425310-mRNA-1:exon:19440;Parent=Msa0425310-mRNA-1
chr3_2	five_prime_UTR	75703796	75704083	75703796	ID=Msa0425310-mRNA-1:five_prime_utr;Parent=Msa0425310-mRNA-1
chr3_2	CDS	75703645	75703795	75703645	ID=Msa0425310-mRNA-1:cds;Parent=Msa0425310-mRNA-1
chr3_2	CDS	75702766	75702910	75702766	ID=Msa0425310-mRNA-1:cds;Parent=Msa0425310-mRNA-1
chr3_2	CDS	75702507	75702675	75702507	ID=Msa0425310-mRNA-1:cds;Parent=Msa0425310-mRNA-1
chr3_2	CDS	75701213	75701483	75701213	ID=Msa0425310-mRNA-1:cds;Parent=Msa0425310-mRNA-1
chr3_2	CDS	75700673	75700938	75700673	ID=Msa0425310-mRNA-1:cds;Parent=Msa0425310-mRNA-1
chr3_2	CDS	75700358	75700573	75700358	ID=Msa0425310-mRNA-1:cds;Parent=Msa0425310-mRNA-1
chr3_2	CDS	75699925	75700027	75699925	ID=Msa0425310-mRNA-1:cds;Parent=Msa0425310-mRNA-1
chr3_2	CDS	75699364	75699422	75699364	ID=Msa0425310-mRNA-1:cds;Parent=Msa0425310-mRNA-1
chr3_2	three_prime_UTR	75698925	75699363	75698925	ID=Msa0425310-mRNA-1:three_prime_utr;Parent=Msa0425310-mRNA-1

Gene Sequence

>Msa0425310

ATGGAGTTGTTCTTCTACCTTGTCTTCGGTGGATTAGCCGCTGTTGTTGCTGTTCTCGAGCTTAGCAAAAACAACAAAGATCGTATCAACACTTCTTCTGTTTTCAATTCCTTCAAGAACAATTATCTTCTCATTTATTCTCTCATGATGGCTGGTGATTGGTTACAAGGTCCATATGTTTACTACCTATACAGTACGTATGGATATGGAAAAGGGGAGATCGGACAACTCTTCATTGCTGGATTTGGGTCTTCGATGTTATTTGGAACAATTGTGGGATCTCTTGCTGACAAACAGGGCCGGAAGAGAGCTTGTGTGACTTACTGTATAACCTACATTGCAAGCTGCATCACCAAGCATTCTCCTCAATACAGAGTCTTGATGTTGGGCCGTATCTTGGGTGGCATTGCCACTTCACTTCTATTTTCGGCATTTGAGTCGTGGCTAGTTGCTGAGCATTTCAAGAGGGGCTTTGATCAGCAATGGCTATCATTAACATTCTCGAAGGCTATATTTCTTGGAAATGGTCTTGTTGCCATATTTTCTGGGCTGTTTGGAAATGTCCTTGTTGATACATTGGCTCTTGGACCAGTGGCCCCCTTTGACGCTGCTGCAGGTTTTCTTACAATTGGTATGATCGTGATATTATCTACATGGACAGAAAACTATGGAGATGCTTCTGAAAACAAGAGCTTGCTTGCCCAATTTAGGGGTGCTGCGGTGGCCATTGCTTCTGATGAAAAAATAGCTTTGCTTGGTGCCATACAGTCTCTCTTTGAAGGTTCAATGTATACCTTTGTGTTCCTATGGACTCCTGCATTGAGCCCAAATGATGAAGAGATCCCCCATGGTTTTATTTTTGCAACATTCATGTTATCTTCAATGTTGGGAAGCTCGCTTGCATCTAAGTTGATGGCTCGTTCATCATTCCGTGTGGAGAGCTACATGCAGATTGTTTTTGCAGTTTCTTCTGCTTCTCTAATGCTTCCCATTCTTACCACTTTTTTTGCAGTTCCTACTAAAGCAACAGGTGGTGGTCTCTCATTCGCCGGGTGCATTCAGCTTTTGGGTTTCTGTACTTTTGAAAGTTGTGTTGGCATATTCTGGCCATCCATTATGAAGATGAGATCTCAATACATTCCTGAGGAAGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTGAACATTTTTGTGTGTGTTGTGCTGTACAATGTTGATGCATTCCCTATCACTGTTATGTTTGGCATGTGCTCAATTTTCCTCTTCATGGCTAGTATCTTACAAAGGCGACTGCTCGTGATTGCGGATAAGCCAAAAACAGAAGATTGGCAACTCAAGGAAAGGGACACCGAGTCAGAGCCATTGAACCTGTAA

Protein sequence

>Msa0425310

MELFFYLVFGGLAAVVAVLELSKNNKDRINTSSVFNSFKNNYLLIYSLMMAGDWLQGPYVYYLYSTYGYGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYIASCITKHSPQYRVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFDQQWLSLTFSKAIFLGNGLVAIFSGLFGNVLVDTLALGPVAPFDAAAGFLTIGMIVILSTWTENYGDASENKSLLAQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLSSMLGSSLASKLMARSSFRVESYMQIVFAVSSASLMLPILTTFFAVPTKATGGGLSFAGCIQLLGFCTFESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLFMASILQRRLLVIADKPKTEDWQLKERDTESEPLNL*