AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0521890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521890 MtrunA17_Chr3g0140191 99.198 998 6 1 1 996 1 998 0.0 2039
Msa0521890 MtrunA17_Chr1g0211851 57.143 973 384 8 25 996 13 953 0.0 1130
Msa0521890 MtrunA17_Chr1g0168251 38.944 1004 545 15 37 995 53 1033 0.0 703
Msa0521890 MtrunA17_Chr1g0186391 38.038 999 565 13 37 995 31 1015 0.0 683
Msa0521890 MtrunA17_Chr6g0467051 37.293 968 568 11 58 995 188 1146 0.0 664
Msa0521890 MtrunA17_Chr8g0353581 31.073 988 583 18 36 994 181 1099 4.62e-135 434
Msa0521890 MtrunA17_Chr1g0211771 50.000 134 67 0 186 319 1 134 5.80e-43 152
Msa0521890 MtrunA17_Chr1g0211761 56.757 74 32 0 333 406 1 74 5.74e-21 89.4
Msa0521890 MtrunA17_Chr1g0211751 55.738 61 27 0 473 533 3 63 2.45e-15 71.6
Msa0521890 MtrunA17_Chr1g0211741 58.491 53 22 0 587 639 2 54 5.93e-15 70.1
Msa0521890 MtrunA17_Chr1g0211731 47.458 59 31 0 659 717 6 64 2.80e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521890 AT2G25800.1 71.314 997 272 11 3 996 2 987 0.0 1442
Msa0521890 AT2G20010.2 58.653 965 379 10 37 996 2 951 0.0 1159
Msa0521890 AT2G20010.1 60.714 840 320 7 160 996 1 833 0.0 1076
Msa0521890 AT2G33420.1 39.924 1047 558 19 11 995 1 1038 0.0 767
Msa0521890 AT1G04470.1 39.118 1020 551 18 38 995 23 1034 0.0 719
Msa0521890 AT5G06970.1 33.830 872 512 15 155 994 260 1098 1.75e-146 465
Msa0521890 AT4G11670.4 26.808 899 557 21 152 993 227 1081 2.40e-88 307
Msa0521890 AT4G11670.1 26.357 903 564 21 148 993 218 1076 8.21e-86 300
Msa0521890 AT4G11670.3 26.327 923 563 23 152 993 227 1113 2.89e-83 293
Msa0521890 AT4G11670.2 25.824 941 557 23 152 993 227 1125 2.67e-81 288

Find 293 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTGTTAAAGTTTCTT+AGG 0.168547 3_4:-74924090 None:intergenic
CAACATTGAGAACCAGTTAT+TGG 0.181600 3_4:+74924105 Msa0521890:three_prime_UTR
TTCTACATTGACTTCGATAT+TGG 0.198334 3_4:+74921337 Msa0521890:CDS
CAATGTAGAACTCAAAATTT+TGG 0.201505 3_4:-74921324 None:intergenic
GGCTCAAAATTTCAAGGCTT+TGG 0.212670 3_4:+74923226 Msa0521890:CDS
AAAACACGTAATAATGTATT+TGG 0.217025 3_4:-74924012 None:intergenic
ATGGAGGGCATTGTCTCTTT+AGG 0.233555 3_4:+74921422 Msa0521890:CDS
ACAAATGGGGATAGCTCTTT+TGG 0.238042 3_4:+74923301 Msa0521890:CDS
AAGAGTCCTGGTTCTGGTTC+TGG 0.246271 3_4:+74919906 Msa0521890:CDS
TCTGGTTCTGCTTCCGGTTC+GGG 0.251397 3_4:+74919924 Msa0521890:CDS
TTCTGCTTCCGGTTCGGGTC+AGG 0.255582 3_4:+74919929 Msa0521890:CDS
GGTTTGAAATCTCCTGGTTC+TGG 0.266567 3_4:+74919876 Msa0521890:CDS
TCTGGTTCTGGTTCTGCTTC+CGG 0.272315 3_4:+74919918 Msa0521890:CDS
TTCTTGTTTGTATTGCTTGC+TGG 0.274899 3_4:+74923715 Msa0521890:CDS
TTGCGAATCTCGTGAAAATA+TGG 0.276207 3_4:+74922486 Msa0521890:CDS
GAATTGAAGCAATTCATTTC+AGG 0.278627 3_4:+74922305 Msa0521890:CDS
TTTGGAATACTCGGAATCTT+TGG 0.280205 3_4:-74921306 None:intergenic
CATGGACTCGTTATTCTTCC+CGG 0.286039 3_4:-74920934 None:intergenic
CAGGATTGATCCGTTTCTTC+AGG 0.286621 3_4:+74923597 Msa0521890:CDS
CAGTCTGTCTATTCTAGTCT+TGG 0.288410 3_4:-74922510 None:intergenic
GAGTTTCTCTTCTGAGAATT+TGG 0.289177 3_4:-74923268 None:intergenic
TTGGAGATCCCTCATCTTCC+AGG 0.293760 3_4:+74923578 Msa0521890:CDS
TTCTGGTTCTGCTTCCGGTT+CGG 0.295949 3_4:+74919923 Msa0521890:CDS
GCCGCATGTCGAACCTCTTC+TGG 0.301195 3_4:+74919714 Msa0521890:CDS
GTTCATACTAGTGATAAATA+AGG 0.302707 3_4:-74924563 None:intergenic
TGGAGGGCATTGTCTCTTTA+GGG 0.304365 3_4:+74921423 Msa0521890:CDS
ATAATGAGAGCTTCCTTTGA+TGG 0.306004 3_4:+74923691 Msa0521890:CDS
CAGCTTGCCATTCCAATAAC+TGG 0.314588 3_4:-74924117 None:intergenic
CTCGTCAGTGCCGGCATTGT+TGG 0.318661 3_4:-74923193 None:intergenic
CTATGATTTGTGAATCCTTC+CGG 0.327209 3_4:-74923759 None:intergenic
AAGTTCTAAAGGAGCTGTTT+TGG 0.333586 3_4:+74923794 Msa0521890:CDS
ATAAGCTCCCCAACCGTTAA+CGG 0.334980 3_4:-74919966 None:intergenic
AGTAAGGTTAAGAAGGCTTT+TGG 0.339002 3_4:+74919855 Msa0521890:CDS
GAAGAGGACTCTCAAGGTTC+TGG 0.339762 3_4:+74920806 Msa0521890:CDS
CCTGGGTGAATTTGATGTTC+TGG 0.342448 3_4:+74923366 Msa0521890:CDS
TGCCACTGGCCAGATGGATT+TGG 0.344716 3_4:+74921226 Msa0521890:CDS
TGTATACTAATAAACAAATA+AGG 0.345368 3_4:-74924642 None:intergenic
AGAAAGAGTCAAGAAGAGTA+TGG 0.354095 3_4:-74919467 None:intergenic
TCTGCTTCCGGTTCGGGTCA+GGG 0.357622 3_4:+74919930 Msa0521890:CDS
TTCCACGATCAAAAGTTTCA+TGG 0.359783 3_4:-74921388 None:intergenic
AACTCGCAGGTTGCAACAAA+TGG 0.362002 3_4:+74923286 Msa0521890:CDS
TCTACATTGACTTCGATATT+GGG 0.363206 3_4:+74921338 Msa0521890:CDS
GCTCAAAATTTCAAGGCTTT+GGG 0.363933 3_4:+74923227 Msa0521890:CDS
GAAGATCTCGTAGGCAGTTA+AGG 0.364153 3_4:-74919688 None:intergenic
CTTAAAACTTGAACAGCATC+AGG 0.366499 3_4:-74922344 None:intergenic
CTGTCATGTCTCTTGCAAAT+AGG 0.366778 3_4:+74920973 Msa0521890:CDS
TTTGCATCCTTACATACCTT+TGG 0.368824 3_4:+74920842 Msa0521890:CDS
GTTATTCTTCCCGGTTTCGA+TGG 0.369414 3_4:-74920925 None:intergenic
AAATACTTTGCAGTGGATCC+TGG 0.374692 3_4:+74923348 Msa0521890:CDS
TATGATTTGTGAATCCTTCC+GGG 0.375343 3_4:-74923758 None:intergenic
TGTACGTTTCAATTCTTTCT+CGG 0.375733 3_4:-74921523 None:intergenic
TCTAAGAAGAGTCCTGGTTC+TGG 0.378612 3_4:+74919900 Msa0521890:CDS
TTGGATAGGCCCATCGAAAC+CGG 0.381362 3_4:+74920915 Msa0521890:CDS
GCCTACATCCTTTGCAAGAA+TGG 0.382078 3_4:-74922177 None:intergenic
GGCCAAGGGCTTGGTGCTAC+TGG 0.383544 3_4:+74924271 Msa0521890:three_prime_UTR
TGCTTGCTGGAGGCCCCTCT+CGG 0.388086 3_4:+74923728 Msa0521890:CDS
TCGTGGAAACGTTGAAACTA+TGG 0.390886 3_4:+74921403 Msa0521890:CDS
TGTTGTTGAATCTCTTCTCT+TGG 0.391006 3_4:-74919562 None:intergenic
GAAATTGAAACGACCGTTAA+CGG 0.392100 3_4:+74919953 Msa0521890:CDS
CAGCCGCTGCGCAGCAGAGT+TGG 0.396522 3_4:-74920871 None:intergenic
CTCTTTAGAGACCTTTCATT+AGG 0.397046 3_4:+74919534 Msa0521890:CDS
AGAATGACTATTATTGTTGT+TGG 0.398818 3_4:-74919772 None:intergenic
GCAGATTATTCATGCTGCTT+TGG 0.399117 3_4:+74920896 Msa0521890:CDS
TTGGAGTCCACAAGCAAATC+AGG 0.401211 3_4:+74922881 Msa0521890:CDS
CTCTGTGTCGGTCCTGAAAA+GGG 0.409212 3_4:-74923884 None:intergenic
CAATTTCCCCTGACCCGAAC+CGG 0.409836 3_4:-74919937 None:intergenic
AACTTCTACGGCTGCTAGTA+AGG 0.411095 3_4:+74919839 Msa0521890:CDS
ACTATTGGCTCAAAATTTCA+AGG 0.411689 3_4:+74923220 Msa0521890:CDS
TTGAATCTCTTCTCTTGGAA+TGG 0.413001 3_4:-74919557 None:intergenic
TCTCCAGCCGCGTGTCTTGA+AGG 0.414172 3_4:+74923475 Msa0521890:CDS
ACTCTCAAGGTTCTGGAGGC+TGG 0.416060 3_4:+74920813 Msa0521890:CDS
GTAGAAGCATTTCATAAATC+CGG 0.416656 3_4:-74921055 None:intergenic
ATTCCATTACCTCCAACTTC+CGG 0.419659 3_4:+74923970 Msa0521890:CDS
CGCTCAAGTTCCTGAAGAAA+CGG 0.420917 3_4:-74923607 None:intergenic
ACTATTATTGTTGTTGGAAG+AGG 0.421777 3_4:-74919766 None:intergenic
TAACGGTTGGGGAGCTTATG+AGG 0.423194 3_4:+74919970 Msa0521890:CDS
CTCTCACTGATTCATGTCAC+TGG 0.423710 3_4:+74921009 Msa0521890:CDS
TGAAACGACCGTTAACGGTT+GGG 0.425777 3_4:+74919958 Msa0521890:CDS
AAGAAGACCTGGGGAATACT+TGG 0.427059 3_4:+74921146 Msa0521890:CDS
AGATCGTCGGCGGTAGGCGG+TGG 0.427261 3_4:-74919615 None:intergenic
TCTACGCCATGCATCACTTC+AGG 0.428363 3_4:-74923002 None:intergenic
GTACGTTTCAATTCTTTCTC+GGG 0.431558 3_4:-74921522 None:intergenic
GAGAACATTGGCCAAGGGCT+TGG 0.432311 3_4:+74924262 Msa0521890:three_prime_UTR
ACTCTGCTGCGCAGCGGCTG+CGG 0.433323 3_4:+74920874 Msa0521890:CDS
TCGTCGGCGGTAGGCGGTGG+TGG 0.434640 3_4:-74919612 None:intergenic
CTGCTTCCGGTTCGGGTCAG+GGG 0.434703 3_4:+74919931 Msa0521890:CDS
CAGTTATTGGAATGGCAAGC+TGG 0.435210 3_4:+74924118 Msa0521890:three_prime_UTR
TCTCTGTGTCGGTCCTGAAA+AGG 0.436618 3_4:-74923885 None:intergenic
CTTTGGCCACGTAATATTGA+AGG 0.438511 3_4:-74923031 None:intergenic
TGTCCGGAAGTTGGAGGTAA+TGG 0.440626 3_4:-74923973 None:intergenic
ACCACAGCCAGATTTAGCTT+TGG 0.442738 3_4:-74923048 None:intergenic
CTTCATTGCAGGTTGGAAGA+AGG 0.444714 3_4:+74920697 Msa0521890:intron
ACTCGCAGGTTGCAACAAAT+GGG 0.445481 3_4:+74923287 Msa0521890:CDS
CTGAAGAAACGGATCAATCC+TGG 0.445795 3_4:-74923596 None:intergenic
TACGTGGCCAAAGCTAAATC+TGG 0.448308 3_4:+74923041 Msa0521890:CDS
GCACTGACGAGATGCACTAT+TGG 0.452098 3_4:+74923205 Msa0521890:CDS
GCTCAGAATTTCTGCTGGAC+AGG 0.452501 3_4:+74920043 Msa0521890:CDS
TTATTCTTCCCGGTTTCGAT+GGG 0.452779 3_4:-74920924 None:intergenic
AGTATGAACTGCAGTTATAC+AGG 0.453782 3_4:+74924577 Msa0521890:three_prime_UTR
GAATAGACAGACTGAAAGAC+TGG 0.454811 3_4:+74922519 Msa0521890:CDS
ATGCATTCTGCTCAAATGTC+TGG 0.456198 3_4:+74924144 Msa0521890:three_prime_UTR
AGAGAAGCTAAACATAGAAT+AGG 0.457214 3_4:-74924427 None:intergenic
GGATGATTTCAAAGTTCTAA+AGG 0.458797 3_4:+74923783 Msa0521890:CDS
GACTTATCCAAAGGTATGTA+AGG 0.460142 3_4:-74920849 None:intergenic
ATAAAACATGGCTTAGATCA+TGG 0.460701 3_4:-74923540 None:intergenic
CGCAGAACTTCAACAGAAGA+TGG 0.462658 3_4:-74922915 None:intergenic
GCACAAGGTCTTTCTCCAAC+TGG 0.462711 3_4:-74922376 None:intergenic
AGAGTCAAGAAGAGTATGGA+TGG 0.473582 3_4:-74919463 None:intergenic
GAGGTATTCATCGGAGAGAT+TGG 0.474537 3_4:-74919664 None:intergenic
ACTCAAGAGATGGCATCCTT+TGG 0.474605 3_4:+74922238 Msa0521890:CDS
TTTCATCGATTTGTTGCCAC+TGG 0.477890 3_4:+74921212 Msa0521890:CDS
ATGGGATTCCTCTGAATCTC+CGG 0.480843 3_4:+74921036 Msa0521890:CDS
TGTCGATCAAGCTTTACTAC+TGG 0.483725 3_4:+74924216 Msa0521890:three_prime_UTR
TACATTTATTCCAACAATGC+CGG 0.483907 3_4:+74923183 Msa0521890:CDS
GAAACGACCGTTAACGGTTG+GGG 0.484963 3_4:+74919959 Msa0521890:CDS
ATCAGATGGACCCCACTGTC+CGG 0.485545 3_4:-74923989 None:intergenic
GCTTGCTGGAGGCCCCTCTC+GGG 0.487224 3_4:+74923729 Msa0521890:CDS
ATCACTTCAGGAAGCAATGC+AGG 0.488114 3_4:-74922990 None:intergenic
CGGATCAATCCTGGAAGATG+AGG 0.488330 3_4:-74923587 None:intergenic
ACCTCCAACTTCCGGACAGT+GGG 0.488634 3_4:+74923978 Msa0521890:CDS
GATTCATGTCACTGGGCAGA+TGG 0.489380 3_4:+74921017 Msa0521890:CDS
CCTCCTTGCCATTCTTGCAA+AGG 0.490097 3_4:+74922169 Msa0521890:CDS
TTCATACTAGTGATAAATAA+GGG 0.491060 3_4:-74924562 None:intergenic
GGACCCCACTGTCCGGAAGT+TGG 0.491064 3_4:-74923982 None:intergenic
AATGCAGCAACTCAAGGCTT+CGG 0.492178 3_4:+74920749 Msa0521890:CDS
TTAGTACGACCTTGCCCAGC+AGG 0.492465 3_4:+74924179 Msa0521890:three_prime_UTR
AATGTTGTTAAAGTTTCTTA+GGG 0.492562 3_4:-74924089 None:intergenic
AAAGAATTGAAACGTACATC+AGG 0.492897 3_4:+74921528 Msa0521890:CDS
TCTGTATCCGATCGATGTTA+TGG 0.494029 3_4:+74919409 Msa0521890:five_prime_UTR
TGCCTTCTGAAATAATAGAC+AGG 0.494168 3_4:+74923833 Msa0521890:CDS
AAAAGAGGGATAATAAAGAA+AGG 0.497499 3_4:+74919356 Msa0521890:five_prime_UTR
GCGTTGCTCAGAATTTCTGC+TGG 0.499189 3_4:+74920038 Msa0521890:CDS
GGATGCCATCTCTTGAGTAT+TGG 0.499480 3_4:-74922233 None:intergenic
TATCCTTCCTGATTTGCTTG+TGG 0.499773 3_4:-74922888 None:intergenic
TCAGAGATCGTTAACTTCTA+CGG 0.500517 3_4:+74919827 Msa0521890:CDS
AATGCAGGATGCATTGGTAT+TGG 0.500944 3_4:-74922975 None:intergenic
AGATGGCATCCTTTGGCAGC+AGG 0.503176 3_4:+74922245 Msa0521890:CDS
TTTAAGAGCTGCAGACCAGT+TGG 0.503301 3_4:+74922361 Msa0521890:CDS
ATTCGTTTCCATAGCATGCA+TGG 0.505085 3_4:-74922286 None:intergenic
TTGAAACGACCGTTAACGGT+TGG 0.505234 3_4:+74919957 Msa0521890:CDS
GGCAAGGTCGTACTAAATAC+AGG 0.506147 3_4:-74924172 None:intergenic
TTATTCATGCTGCTTTGGAT+AGG 0.506168 3_4:+74920901 Msa0521890:CDS
ATCAACAAGAATACAGTGAA+TGG 0.506366 3_4:+74920781 Msa0521890:CDS
GGCTGCTAGTAAGGTTAAGA+AGG 0.508957 3_4:+74919848 Msa0521890:CDS
CTTTGCAAGAATGGCAAGGA+GGG 0.509853 3_4:-74922168 None:intergenic
GCTACCCTCCATGCATGCTA+TGG 0.509945 3_4:+74922278 Msa0521890:CDS
ATCTTTAACGAAGGTGGTGA+TGG 0.510021 3_4:-74919585 None:intergenic
TATTGGGATGGGCAGAGAAA+AGG 0.510276 3_4:+74921354 Msa0521890:CDS
AGTTGCTGCATTAGCTCAAG+TGG 0.511277 3_4:-74920738 None:intergenic
GAGCTTCTGTCTGATGCTGA+TGG 0.511404 3_4:+74921248 Msa0521890:CDS
ATTCCTTCAAGACACGCGGC+TGG 0.512629 3_4:-74923478 None:intergenic
GGAAGCAATGCAGGATGCAT+TGG 0.513711 3_4:-74922981 None:intergenic
GGAGGGCATTGTCTCTTTAG+GGG 0.514556 3_4:+74921424 Msa0521890:CDS
CATTTATTCTTGCCTCACTT+CGG 0.517397 3_4:-74924309 None:intergenic
AACAGAGATTATGATACGTC+TGG 0.518236 3_4:-74921175 None:intergenic
GTGAGGCAAGAATAAATGTT+GGG 0.520078 3_4:+74924314 Msa0521890:three_prime_UTR
GCCATTCTTGCAAAGGATGT+AGG 0.520093 3_4:+74922176 Msa0521890:CDS
TGGAGAAAGCAGACTCAAGC+AGG 0.520288 3_4:+74922114 Msa0521890:CDS
TGCCAGTAGCACCAAGCCCT+TGG 0.520380 3_4:-74924273 None:intergenic
ACAGAAGCTCCAAATCCATC+TGG 0.522010 3_4:-74921235 None:intergenic
TCTGGTTCTAAGAAGAGTCC+TGG 0.522127 3_4:+74919894 Msa0521890:CDS
AAAGGGGAAGGATAGACCTC+AGG 0.522716 3_4:-74923867 None:intergenic
TGCAAAGGATGTAGGCAGCC+TGG 0.523674 3_4:+74922184 Msa0521890:CDS
AACCTGTCTATTATTTCAGA+AGG 0.523873 3_4:-74923835 None:intergenic
AATAATGTATTTGGATCAGA+TGG 0.524578 3_4:-74924003 None:intergenic
AATGCAGATAAATTACCTGC+TGG 0.526178 3_4:-74924194 None:intergenic
CTTGCAAATAGGTCGTATGA+TGG 0.527450 3_4:+74920984 Msa0521890:CDS
GAAAGTTGACCGAGTGGAGA+AGG 0.529436 3_4:-74919639 None:intergenic
ATTAGTATACATGCAAAACC+CGG 0.531592 3_4:+74924654 Msa0521890:three_prime_UTR
CCTTGTGCAGATAGCTGTTG+AGG 0.535897 3_4:+74922391 Msa0521890:CDS
ATTTGTTGCCACTGGCCAGA+TGG 0.538861 3_4:+74921220 Msa0521890:CDS
ACGTCTCACACGCGAATCCA+TGG 0.540350 3_4:-74920015 None:intergenic
AATACTTTGCAGTGGATCCT+GGG 0.540872 3_4:+74923349 Msa0521890:CDS
CCGAGTCAGAACTCGCCGCT+TGG 0.541782 3_4:+74919801 Msa0521890:CDS
GATGAGGGTTTCTGAAGCCA+TGG 0.541906 3_4:+74919998 Msa0521890:CDS
CTCAATGAGGCTCTCTGTGT+CGG 0.542053 3_4:-74923896 None:intergenic
AGTTATTGGAATGGCAAGCT+GGG 0.542402 3_4:+74924119 Msa0521890:three_prime_UTR
GGCATTATCTTTAACGAAGG+TGG 0.543436 3_4:-74919591 None:intergenic
CATTGACTTCGATATTGGGA+TGG 0.544223 3_4:+74921342 Msa0521890:CDS
TGGAACAAATCAAGAAGACC+TGG 0.545660 3_4:+74921135 Msa0521890:CDS
TTATGGGATAGTTTGTATGT+TGG 0.550276 3_4:+74923559 Msa0521890:CDS
TCTTGGAATGGCCTAATGAA+AGG 0.551434 3_4:-74919545 None:intergenic
GCACCTTCTGCTTCGTAAGG+AGG 0.551903 3_4:-74922461 None:intergenic
TCAAGAAGAGTATGGATGGA+TGG 0.554654 3_4:-74919459 None:intergenic
CTCTTCTTAGAACCAGAACC+AGG 0.557153 3_4:-74919888 None:intergenic
GCAGAACCAGAACCAGAACC+AGG 0.560315 3_4:-74919912 None:intergenic
ATTGCACCTTCTGCTTCGTA+AGG 0.562101 3_4:-74922464 None:intergenic
TTCTCAGAAGAGAAACTCGC+AGG 0.563521 3_4:+74923273 Msa0521890:CDS
GAAGGAAGATCGTCGGCGGT+AGG 0.565173 3_4:-74919621 None:intergenic
TGAGCTAATGCAGCAACTCA+AGG 0.568356 3_4:+74920743 Msa0521890:CDS
ATTCATGTCACTGGGCAGAT+GGG 0.568585 3_4:+74921018 Msa0521890:CDS
GAAGCTGAAAGAATGCATCC+AGG 0.568789 3_4:-74922953 None:intergenic
AGACATATAAATCTTCTGCC+AGG 0.568965 3_4:+74923941 Msa0521890:CDS
ATAGTGCATCTCGTCAGTGC+CGG 0.569024 3_4:-74923202 None:intergenic
TTGAGAACCAGTTATTGGAA+TGG 0.570303 3_4:+74924110 Msa0521890:three_prime_UTR
TTGCAAGAATGGCAAGGAGG+GGG 0.571275 3_4:-74922166 None:intergenic
GACGATCTTCCTTCTCCACT+CGG 0.573451 3_4:+74919630 Msa0521890:CDS
TTGTTTGTATTGCTTGCTGG+AGG 0.576276 3_4:+74923718 Msa0521890:CDS
GCCTCATTGAGCAGTTTAGA+CGG 0.577385 3_4:+74923908 Msa0521890:CDS
AATACAGTGAATGGCAGAAG+AGG 0.578035 3_4:+74920790 Msa0521890:CDS
ATTGACTTCGATATTGGGAT+GGG 0.578379 3_4:+74921343 Msa0521890:CDS
AGTGAGGCAAGAATAAATGT+TGG 0.578710 3_4:+74924313 Msa0521890:three_prime_UTR
TCATAAATCCGGAGATTCAG+AGG 0.580170 3_4:-74921044 None:intergenic
GAAGAATAACGAGTCCATGC+AGG 0.580172 3_4:+74920938 Msa0521890:CDS
ATGCAGATAAATTACCTGCT+GGG 0.581915 3_4:-74924193 None:intergenic
GATTCAGTGGACAGTGATGA+TGG 0.583618 3_4:+74922413 Msa0521890:CDS
TTCGCATAAATACTTTGCAG+TGG 0.584932 3_4:+74923341 Msa0521890:CDS
TGGATAGGCCCATCGAAACC+GGG 0.585233 3_4:+74920916 Msa0521890:CDS
TTTCACTACACTGAGAACAT+TGG 0.585773 3_4:+74924250 Msa0521890:three_prime_UTR
GATAAATTACCTGCTGGGCA+AGG 0.587039 3_4:-74924188 None:intergenic
TACAAACAAGAATCCATCAA+AGG 0.587937 3_4:-74923704 None:intergenic
TACACTGAGAACATTGGCCA+AGG 0.588292 3_4:+74924256 Msa0521890:three_prime_UTR
TCTCACTGATTCATGTCACT+GGG 0.588827 3_4:+74921010 Msa0521890:CDS
AAGGGGAAGGATAGACCTCA+GGG 0.591323 3_4:-74923866 None:intergenic
GCGAATCATAAATGAAACCC+TGG 0.591476 3_4:+74922935 Msa0521890:CDS
GCCAAAGCTAAATCTGGCTG+TGG 0.591978 3_4:+74923047 Msa0521890:CDS
GGTGGCATTATCTTTAACGA+AGG 0.592180 3_4:-74919594 None:intergenic
GATAGCTGTTGAGGATTCAG+TGG 0.593196 3_4:+74922400 Msa0521890:CDS
GTTCAATCCAAGTATTCCCC+AGG 0.593786 3_4:-74921153 None:intergenic
GGAACAAATCAAGAAGACCT+GGG 0.600803 3_4:+74921136 Msa0521890:CDS
TGGAAGAAGGATTGAGTCTG+TGG 0.601665 3_4:+74920710 Msa0521890:CDS
GTATTCATCGGAGAGATTGG+TGG 0.602433 3_4:-74919661 None:intergenic
CCAGAACATCAAATTCACCC+AGG 0.604022 3_4:-74923366 None:intergenic
ACCAGAAGAGGTTCGACATG+CGG 0.604617 3_4:-74919715 None:intergenic
TTAAAACTTGAACAGCATCA+GGG 0.605982 3_4:-74922343 None:intergenic
AGCTTATGAGGAATCAGATG+AGG 0.607480 3_4:+74919982 Msa0521890:CDS
TCTGTGTCGGTCCTGAAAAG+GGG 0.608220 3_4:-74923883 None:intergenic
CCCCACTGTCCGGAAGTTGG+AGG 0.609288 3_4:-74923979 None:intergenic
AAGCTGAAAGAATGCATCCA+GGG 0.609415 3_4:-74922952 None:intergenic
ACTGAGAGGCTTACCAGAAG+AGG 0.611640 3_4:-74919727 None:intergenic
ACAGCAAGACCTGCTGCCAA+AGG 0.613633 3_4:-74922254 None:intergenic
CCAAGCGGCGAGTTCTGACT+CGG 0.613768 3_4:-74919801 None:intergenic
TGGAAACGTTGAAACTATGG+AGG 0.615215 3_4:+74921406 Msa0521890:CDS
TTTGGCAGCAGGTCTTGCTG+TGG 0.615431 3_4:+74922256 Msa0521890:CDS
GGAAGATCGTCGGCGGTAGG+CGG 0.615592 3_4:-74919618 None:intergenic
AGTTAAGGTGAGGTATTCAT+CGG 0.619093 3_4:-74919673 None:intergenic
TCAGTCCAATACTCAAGAGA+TGG 0.621303 3_4:+74922228 Msa0521890:CDS
TACCTCCAACTTCCGGACAG+TGG 0.623157 3_4:+74923977 Msa0521890:CDS
TTTGCAAGAATGGCAAGGAG+GGG 0.623362 3_4:-74922167 None:intergenic
GCTGCTACCATAACATCGAT+CGG 0.624338 3_4:-74919416 None:intergenic
GAAGGATTCACAAATCATAG+AGG 0.624526 3_4:+74923762 Msa0521890:CDS
GTTTCCATAGCATGCATGGA+GGG 0.624701 3_4:-74922282 None:intergenic
GGATCAATCCTGGAAGATGA+GGG 0.625391 3_4:-74923586 None:intergenic
CTCCAAATCCATCTGGCCAG+TGG 0.625417 3_4:-74921228 None:intergenic
GAAAGCAGACTCAAGCAGGA+GGG 0.626703 3_4:+74922118 Msa0521890:CDS
TGTCGGTCCTGAAAAGGGGA+AGG 0.627708 3_4:-74923879 None:intergenic
TTTATGCGAACACAGAGTTG+TGG 0.627937 3_4:-74923328 None:intergenic
CCTTTGCAAGAATGGCAAGG+AGG 0.631775 3_4:-74922169 None:intergenic
TGATAGAAATCTGCAGCAAG+AGG 0.632292 3_4:+74922544 Msa0521890:CDS
ATGCCTCCTTACGAAGCAGA+AGG 0.634351 3_4:+74922458 Msa0521890:CDS
CCTCAACAGCTATCTGCACA+AGG 0.635306 3_4:-74922391 None:intergenic
TCCGTCTAAACTGCTCAATG+AGG 0.636700 3_4:-74923909 None:intergenic
GAGGACTCTCAAGGTTCTGG+AGG 0.638648 3_4:+74920809 Msa0521890:CDS
GCTTATGAGGAATCAGATGA+GGG 0.638968 3_4:+74919983 Msa0521890:CDS
TAAAACTTGAACAGCATCAG+GGG 0.639874 3_4:-74922342 None:intergenic
AGCGGCTAAGATATTGCTTG+AGG 0.639941 3_4:+74921451 Msa0521890:CDS
CTCGCAGGTTGCAACAAATG+GGG 0.641472 3_4:+74923288 Msa0521890:CDS
TTAGTATACATGCAAAACCC+GGG 0.641619 3_4:+74924655 Msa0521890:three_prime_UTR
ACAAACTATCCCATAAAACA+TGG 0.645581 3_4:-74923552 None:intergenic
TTGCTTCCTGAAGTGATGCA+TGG 0.649727 3_4:+74922996 Msa0521890:CDS
GAGTGGAGAAGGAAGATCGT+CGG 0.649957 3_4:-74919628 None:intergenic
CATCCTTTGCAAGAATGGCA+AGG 0.651566 3_4:-74922172 None:intergenic
AGAAAGCAGACTCAAGCAGG+AGG 0.652723 3_4:+74922117 Msa0521890:CDS
AGAACTACGAAGAACCTGCA+TGG 0.652762 3_4:-74920952 None:intergenic
CGTTTCCATAGCATGCATGG+AGG 0.655003 3_4:-74922283 None:intergenic
TTTCTTTCGAGTCCGAAGTG+AGG 0.656193 3_4:+74924297 Msa0521890:three_prime_UTR
ATATATCTAATGAATATCGT+CGG 0.658453 3_4:+74921474 Msa0521890:CDS
TGTCTCTTTAGGGGTAGCAG+CGG 0.659641 3_4:+74921433 Msa0521890:CDS
TAAGGGACAACGCAATCCAG+AGG 0.660062 3_4:-74924545 None:intergenic
TCAAGCTTTACTACTGGACA+TGG 0.660720 3_4:+74924222 Msa0521890:three_prime_UTR
ATGGCAGAAGAGGACTCTCA+AGG 0.662747 3_4:+74920800 Msa0521890:CDS
GCAGAGTTGGACTTATCCAA+AGG 0.663196 3_4:-74920858 None:intergenic
ACACTGAGAACATTGGCCAA+GGG 0.667900 3_4:+74924257 Msa0521890:three_prime_UTR
TCTCGTAGGCAGTTAAGGTG+AGG 0.668289 3_4:-74919683 None:intergenic
CTGAATTCCTTCAAGACACG+CGG 0.671823 3_4:-74923482 None:intergenic
AATAGACAGACTGAAAGACT+GGG 0.674683 3_4:+74922520 Msa0521890:CDS
GGAAACGTTGAAACTATGGA+GGG 0.678419 3_4:+74921407 Msa0521890:CDS
TTGGTGGAAAGTTGACCGAG+TGG 0.679788 3_4:-74919645 None:intergenic
AGGAATTCAGCAGCTATGTG+AGG 0.683434 3_4:+74923495 Msa0521890:CDS
AGGTAATGGAATTCTAGACC+TGG 0.684017 3_4:-74923959 None:intergenic
TATCTAATGAATATCGTCGG+AGG 0.690045 3_4:+74921477 Msa0521890:CDS
AACGATCTCTGAATACCAAG+CGG 0.693612 3_4:-74919816 None:intergenic
TTAGCAATTGATGAACTGAG+AGG 0.694391 3_4:-74919741 None:intergenic
GAACAAATCAAGAAGACCTG+GGG 0.694702 3_4:+74921137 Msa0521890:CDS
AGTCCACAAGCAAATCAGGA+AGG 0.695524 3_4:+74922885 Msa0521890:CDS
AGTCCAACTCTGCTGCGCAG+CGG 0.703256 3_4:+74920868 Msa0521890:CDS
GAAGATTAGAGATGTCTCTG+TGG 0.716359 3_4:+74924404 Msa0521890:three_prime_UTR
TGCGGCGACGAAGATCTCGT+AGG 0.722455 3_4:-74919697 None:intergenic
ACAGGTTTGCAACTACCCTG+AGG 0.728126 3_4:+74923851 Msa0521890:CDS
TGGAGAAGGAAGATCGTCGG+CGG 0.730872 3_4:-74919625 None:intergenic
TAGATGCCTTCAATATTACG+TGG 0.734258 3_4:+74923025 Msa0521890:CDS
CCTCCAACTTCCGGACAGTG+GGG 0.745165 3_4:+74923979 Msa0521890:CDS
TCAGTGGACAGTGATGATGG+TGG 0.776008 3_4:+74922416 Msa0521890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTATTCTTTAGTAAA+AGG + chr3_4:74921603-74921622 Msa0521890:intron 10.0%
!! TATAAACCAAAAAATTTAAT+TGG - chr3_4:74921862-74921881 None:intergenic 10.0%
!!! ATTAAATTTTTTGGTTTATA+AGG + chr3_4:74921862-74921881 Msa0521890:intron 10.0%
!! TAAAATAAAAAAATCTCAAA+AGG - chr3_4:74924467-74924486 None:intergenic 10.0%
!! AAAATTCAACATTCAATTAT+TGG + chr3_4:74920167-74920186 Msa0521890:intron 15.0%
!!! TTGTTATTTGAAAAAATGTT+AGG + chr3_4:74922620-74922639 Msa0521890:intron 15.0%
!!! TGTTATTTGAAAAAATGTTA+GGG + chr3_4:74922621-74922640 Msa0521890:intron 15.0%
!!! AATATTCTTTTAGTTGATTA+GGG + chr3_4:74922749-74922768 Msa0521890:intron 15.0%
!!! AAAGAATAATTACTCTTTTA+CGG + chr3_4:74923392-74923411 Msa0521890:CDS 15.0%
!!! ATTTTCGATTCATTAATTTT+TGG + chr3_4:74924382-74924401 Msa0521890:three_prime_UTR 15.0%
!! TGTATACTAATAAACAAATA+AGG - chr3_4:74924645-74924664 None:intergenic 15.0%
!!! GATGATTTTTCGTTTTTATT+TGG + chr3_4:74920134-74920153 Msa0521890:intron 20.0%
!!! TCAAAAGCTCTAATTAATTT+TGG - chr3_4:74920383-74920402 None:intergenic 20.0%
!! AGTTAAACAACAAATTTGAA+TGG - chr3_4:74920423-74920442 None:intergenic 20.0%
!!! TTTTACTTTTTAGTTGAACA+TGG + chr3_4:74920650-74920669 Msa0521890:intron 20.0%
!! ATATATCTAATGAATATCGT+CGG + chr3_4:74921474-74921493 Msa0521890:CDS 20.0%
!!! TGCATAGATTTTACTTATAA+AGG + chr3_4:74921755-74921774 Msa0521890:intron 20.0%
!! ATTTAATTGGCATGTAAATA+TGG - chr3_4:74921849-74921868 None:intergenic 20.0%
!!! TACATGCCAATTAAATTTTT+TGG + chr3_4:74921853-74921872 Msa0521890:intron 20.0%
!!! CAATATTCTTTTAGTTGATT+AGG + chr3_4:74922748-74922767 Msa0521890:intron 20.0%
!!! AATAGTTTAGCTCTTATATA+TGG + chr3_4:74923088-74923107 Msa0521890:intron 20.0%
!! ATCTTTAATAACTGTATATG+TGG + chr3_4:74923112-74923131 Msa0521890:intron 20.0%
!!! TGTTTTTTATTCCAATATTC+AGG + chr3_4:74923151-74923170 Msa0521890:intron 20.0%
!! AAAACACGTAATAATGTATT+TGG - chr3_4:74924015-74924034 None:intergenic 20.0%
!! AATGTTGTTAAAGTTTCTTA+GGG - chr3_4:74924092-74924111 None:intergenic 20.0%
!! AAAAAATCTCAAAAGGTAAA+AGG - chr3_4:74924460-74924479 None:intergenic 20.0%
!! TTCATACTAGTGATAAATAA+GGG - chr3_4:74924565-74924584 None:intergenic 20.0%
!!! TACTTTTTCAATCAACAAAT+AGG - chr3_4:74924613-74924632 None:intergenic 20.0%
! AAAAGAGGGATAATAAAGAA+AGG + chr3_4:74919356-74919375 Msa0521890:five_prime_UTR 25.0%
! AGAATGACTATTATTGTTGT+TGG - chr3_4:74919775-74919794 None:intergenic 25.0%
! GAAAAATCATCAACAAAATC+TGG - chr3_4:74920125-74920144 None:intergenic 25.0%
! AATGTAAAGTAATTCATGCT+TGG - chr3_4:74920465-74920484 None:intergenic 25.0%
!!! GATTTTGAGTGAATTGATTA+AGG - chr3_4:74920502-74920521 None:intergenic 25.0%
! AATAAACATTTACACAGACA+AGG - chr3_4:74920565-74920584 None:intergenic 25.0%
!! ATCATAATCTCTGTTTTACT+TGG + chr3_4:74921183-74921202 Msa0521890:CDS 25.0%
!! TCATAATCTCTGTTTTACTT+GGG + chr3_4:74921184-74921203 Msa0521890:CDS 25.0%
!!! ACTCAAAATTTTGGAATACT+CGG - chr3_4:74921318-74921337 None:intergenic 25.0%
!! CAATGTAGAACTCAAAATTT+TGG - chr3_4:74921327-74921346 None:intergenic 25.0%
!!! TTGGAATTTGCTTTTAACTT+TGG + chr3_4:74921683-74921702 Msa0521890:intron 25.0%
!! TGCTTTACAAACTAGAATTT+TGG + chr3_4:74921794-74921813 Msa0521890:intron 25.0%
!! GCTTTACAAACTAGAATTTT+GGG + chr3_4:74921795-74921814 Msa0521890:intron 25.0%
! ATAAATAACATGCTATTGCA+CGG - chr3_4:74921960-74921979 None:intergenic 25.0%
!! TGCAATAGCATGTTATTTAT+GGG + chr3_4:74921960-74921979 Msa0521890:intron 25.0%
! TCACAATGAATATCATCAAT+GGG - chr3_4:74922598-74922617 None:intergenic 25.0%
! TGATTAATTTCTGTGTATTC+TGG + chr3_4:74922796-74922815 Msa0521890:intron 25.0%
!!! AGAGAAGAAGATTTTTCAAA+CGG + chr3_4:74923430-74923449 Msa0521890:CDS 25.0%
! AATAATGTATTTGGATCAGA+TGG - chr3_4:74924006-74924025 None:intergenic 25.0%
! CAATGTTGTTAAAGTTTCTT+AGG - chr3_4:74924093-74924112 None:intergenic 25.0%
!!! TTAACCACCTTTTTTCAAAT+AGG - chr3_4:74924357-74924376 None:intergenic 25.0%
! GTTCATACTAGTGATAAATA+AGG - chr3_4:74924566-74924585 None:intergenic 25.0%
! CTTCTTCTTCTTTTCTTCAA+TGG + chr3_4:74919503-74919522 Msa0521890:exon 30.0%
! ACTATTATTGTTGTTGGAAG+AGG - chr3_4:74919769-74919788 None:intergenic 30.0%
ATTTCAACAAACACTAGCAT+TGG - chr3_4:74920269-74920288 None:intergenic 30.0%
TTGACTAGATTCATTCCATA+AGG + chr3_4:74920293-74920312 Msa0521890:intron 30.0%
ACTTAAAGCAAGTGTATGTT+TGG + chr3_4:74920340-74920359 Msa0521890:intron 30.0%
!!! AATTTTGGCTACTCAAAAAG+TGG - chr3_4:74920368-74920387 None:intergenic 30.0%
AGTGAATTGATTAAGGCTAA+AGG - chr3_4:74920495-74920514 None:intergenic 30.0%
ATTCGCATTGGAATTGAAAA+GGG + chr3_4:74920610-74920629 Msa0521890:intron 30.0%
ATCAACAAGAATACAGTGAA+TGG + chr3_4:74920781-74920800 Msa0521890:CDS 30.0%
!! GTAGAAGCATTTCATAAATC+CGG - chr3_4:74921058-74921077 None:intergenic 30.0%
!! TGAAGATTTTGATGAGCTAA+TGG + chr3_4:74921115-74921134 Msa0521890:CDS 30.0%
!! TTCTACATTGACTTCGATAT+TGG + chr3_4:74921337-74921356 Msa0521890:CDS 30.0%
!! TCTACATTGACTTCGATATT+GGG + chr3_4:74921338-74921357 Msa0521890:CDS 30.0%
TGTACGTTTCAATTCTTTCT+CGG - chr3_4:74921526-74921545 None:intergenic 30.0%
AAAGAATTGAAACGTACATC+AGG + chr3_4:74921528-74921547 Msa0521890:CDS 30.0%
GAATGCTAAGAGATGTTTAA+AGG - chr3_4:74921709-74921728 None:intergenic 30.0%
! GTGCAATAGCATGTTATTTA+TGG + chr3_4:74921959-74921978 Msa0521890:intron 30.0%
GAATTGAAGCAATTCATTTC+AGG + chr3_4:74922305-74922324 Msa0521890:CDS 30.0%
TTAAAACTTGAACAGCATCA+GGG - chr3_4:74922346-74922365 None:intergenic 30.0%
GTCACAATGAATATCATCAA+TGG - chr3_4:74922599-74922618 None:intergenic 30.0%
ATTAAGTCATTGCAAACTGT+GGG + chr3_4:74922696-74922715 Msa0521890:intron 30.0%
GATTAGGGATAACATGTTTA+TGG + chr3_4:74922764-74922783 Msa0521890:intron 30.0%
TATTTCGAGATCCTGAATAT+TGG - chr3_4:74923165-74923184 None:intergenic 30.0%
TACATTTATTCCAACAATGC+CGG + chr3_4:74923183-74923202 Msa0521890:CDS 30.0%
!! ACTATTGGCTCAAAATTTCA+AGG + chr3_4:74923220-74923239 Msa0521890:CDS 30.0%
GTTTGAAAAATCTTCTTCTC+TGG - chr3_4:74923431-74923450 None:intergenic 30.0%
ATAAAACATGGCTTAGATCA+TGG - chr3_4:74923543-74923562 None:intergenic 30.0%
! ATGATCTAAGCCATGTTTTA+TGG + chr3_4:74923542-74923561 Msa0521890:CDS 30.0%
! TGATCTAAGCCATGTTTTAT+GGG + chr3_4:74923543-74923562 Msa0521890:CDS 30.0%
ACAAACTATCCCATAAAACA+TGG - chr3_4:74923555-74923574 None:intergenic 30.0%
! TTATGGGATAGTTTGTATGT+TGG + chr3_4:74923559-74923578 Msa0521890:CDS 30.0%
TACAAACAAGAATCCATCAA+AGG - chr3_4:74923707-74923726 None:intergenic 30.0%
! GGATGATTTCAAAGTTCTAA+AGG + chr3_4:74923783-74923802 Msa0521890:CDS 30.0%
AACCTGTCTATTATTTCAGA+AGG - chr3_4:74923838-74923857 None:intergenic 30.0%
ACACAAGCCTATTTGAAAAA+AGG + chr3_4:74924347-74924366 Msa0521890:three_prime_UTR 30.0%
AGAGAAGCTAAACATAGAAT+AGG - chr3_4:74924430-74924449 None:intergenic 30.0%
! ATTCTTTTGATGAATTCCTC+TGG + chr3_4:74924529-74924548 Msa0521890:three_prime_UTR 30.0%
ATTAGTATACATGCAAAACC+CGG + chr3_4:74924654-74924673 Msa0521890:three_prime_UTR 30.0%
AGAAAGAGTCAAGAAGAGTA+TGG - chr3_4:74919470-74919489 None:intergenic 35.0%
! CTCTTTAGAGACCTTTCATT+AGG + chr3_4:74919534-74919553 Msa0521890:CDS 35.0%
TTGAATCTCTTCTCTTGGAA+TGG - chr3_4:74919560-74919579 None:intergenic 35.0%
TGTTGTTGAATCTCTTCTCT+TGG - chr3_4:74919565-74919584 None:intergenic 35.0%
! AGTTAAGGTGAGGTATTCAT+CGG - chr3_4:74919676-74919695 None:intergenic 35.0%
TTAGCAATTGATGAACTGAG+AGG - chr3_4:74919744-74919763 None:intergenic 35.0%
TCAGAGATCGTTAACTTCTA+CGG + chr3_4:74919827-74919846 Msa0521890:CDS 35.0%
! AGTAAGGTTAAGAAGGCTTT+TGG + chr3_4:74919855-74919874 Msa0521890:CDS 35.0%
GAAATTGAAACGACCGTTAA+CGG + chr3_4:74919953-74919972 Msa0521890:CDS 35.0%
!!! CTGCTTTTTTGATCTGCTTT+TGG + chr3_4:74920200-74920219 Msa0521890:intron 35.0%
! ACACTAGCATTGGATTAAAG+TGG - chr3_4:74920259-74920278 None:intergenic 35.0%
ACAACTTAACGAACACCTTA+TGG - chr3_4:74920311-74920330 None:intergenic 35.0%
GGAATAATTAAGCGTGTGTT+TGG - chr3_4:74920544-74920563 None:intergenic 35.0%
GATTCGCATTGGAATTGAAA+AGG + chr3_4:74920609-74920628 Msa0521890:intron 35.0%
! TAACTTGTGAACTTCATTGC+AGG + chr3_4:74920686-74920705 Msa0521890:intron 35.0%
TTTGCATCCTTACATACCTT+TGG + chr3_4:74920842-74920861 Msa0521890:CDS 35.0%
! GACTTATCCAAAGGTATGTA+AGG - chr3_4:74920852-74920871 None:intergenic 35.0%
!! TTATTCATGCTGCTTTGGAT+AGG + chr3_4:74920901-74920920 Msa0521890:CDS 35.0%
AACAGAGATTATGATACGTC+TGG - chr3_4:74921178-74921197 None:intergenic 35.0%
! TTTGGAATACTCGGAATCTT+TGG - chr3_4:74921309-74921328 None:intergenic 35.0%
! ATTGACTTCGATATTGGGAT+GGG + chr3_4:74921343-74921362 Msa0521890:CDS 35.0%
! TACCATGAAACTTTTGATCG+TGG + chr3_4:74921386-74921405 Msa0521890:CDS 35.0%
TTCCACGATCAAAAGTTTCA+TGG - chr3_4:74921391-74921410 None:intergenic 35.0%
TATCTAATGAATATCGTCGG+AGG + chr3_4:74921477-74921496 Msa0521890:CDS 35.0%
GTACGTTTCAATTCTTTCTC+GGG - chr3_4:74921525-74921544 None:intergenic 35.0%
CAGACTATATAAACTTGCCT+GGG - chr3_4:74921576-74921595 None:intergenic 35.0%
ACAGACTATATAAACTTGCC+TGG - chr3_4:74921577-74921596 None:intergenic 35.0%
AGTGCTTAATGTGAGAGAAT+TGG + chr3_4:74921664-74921683 Msa0521890:intron 35.0%
! TAAGGCAAACAAGCTTTATC+AGG + chr3_4:74921880-74921899 Msa0521890:intron 35.0%
! TTGTTGAGTTGTGCAAGTAA+CGG + chr3_4:74921903-74921922 Msa0521890:intron 35.0%
GTTTGATCATGAACAAACCT+AGG + chr3_4:74921929-74921948 Msa0521890:intron 35.0%
! TTTTGCTGCTGCATAGATAA+TGG + chr3_4:74922094-74922113 Msa0521890:intron 35.0%
TAAAACTTGAACAGCATCAG+GGG - chr3_4:74922345-74922364 None:intergenic 35.0%
CTTAAAACTTGAACAGCATC+AGG - chr3_4:74922347-74922366 None:intergenic 35.0%
TTGCGAATCTCGTGAAAATA+TGG + chr3_4:74922486-74922505 Msa0521890:CDS 35.0%
AATAGACAGACTGAAAGACT+GGG + chr3_4:74922520-74922539 Msa0521890:CDS 35.0%
CATTAAGTCATTGCAAACTG+TGG + chr3_4:74922695-74922714 Msa0521890:intron 35.0%
GTCAATTGATTGCCTTTATG+TGG + chr3_4:74922827-74922846 Msa0521890:intron 35.0%
TTACTGTGATATCCTAGCTT+TGG + chr3_4:74922862-74922881 Msa0521890:intron 35.0%
TAGATGCCTTCAATATTACG+TGG + chr3_4:74923025-74923044 Msa0521890:CDS 35.0%
GCTCAAAATTTCAAGGCTTT+GGG + chr3_4:74923227-74923246 Msa0521890:CDS 35.0%
! GAGTTTCTCTTCTGAGAATT+TGG - chr3_4:74923271-74923290 None:intergenic 35.0%
TTCGCATAAATACTTTGCAG+TGG + chr3_4:74923341-74923360 Msa0521890:CDS 35.0%
ATAATGAGAGCTTCCTTTGA+TGG + chr3_4:74923691-74923710 Msa0521890:CDS 35.0%
! TTCTTGTTTGTATTGCTTGC+TGG + chr3_4:74923715-74923734 Msa0521890:CDS 35.0%
! TATGATTTGTGAATCCTTCC+GGG - chr3_4:74923761-74923780 None:intergenic 35.0%
! CTATGATTTGTGAATCCTTC+CGG - chr3_4:74923762-74923781 None:intergenic 35.0%
GAAGGATTCACAAATCATAG+AGG + chr3_4:74923762-74923781 Msa0521890:CDS 35.0%
!!! AAGTTCTAAAGGAGCTGTTT+TGG + chr3_4:74923794-74923813 Msa0521890:CDS 35.0%
!!! AGTTCTAAAGGAGCTGTTTT+GGG + chr3_4:74923795-74923814 Msa0521890:CDS 35.0%
!! TGCCTTCTGAAATAATAGAC+AGG + chr3_4:74923833-74923852 Msa0521890:CDS 35.0%
AGACATATAAATCTTCTGCC+AGG + chr3_4:74923941-74923960 Msa0521890:CDS 35.0%
CAACATTGAGAACCAGTTAT+TGG + chr3_4:74924105-74924124 Msa0521890:three_prime_UTR 35.0%
TTGAGAACCAGTTATTGGAA+TGG + chr3_4:74924110-74924129 Msa0521890:three_prime_UTR 35.0%
ATGCAGATAAATTACCTGCT+GGG - chr3_4:74924196-74924215 None:intergenic 35.0%
AATGCAGATAAATTACCTGC+TGG - chr3_4:74924197-74924216 None:intergenic 35.0%
TTTCACTACACTGAGAACAT+TGG + chr3_4:74924250-74924269 Msa0521890:three_prime_UTR 35.0%
CATTTATTCTTGCCTCACTT+CGG - chr3_4:74924312-74924331 None:intergenic 35.0%
AGTGAGGCAAGAATAAATGT+TGG + chr3_4:74924313-74924332 Msa0521890:three_prime_UTR 35.0%
GTGAGGCAAGAATAAATGTT+GGG + chr3_4:74924314-74924333 Msa0521890:three_prime_UTR 35.0%
CAAGCCTATTTGAAAAAAGG+TGG + chr3_4:74924350-74924369 Msa0521890:three_prime_UTR 35.0%
AGTATGAACTGCAGTTATAC+AGG + chr3_4:74924577-74924596 Msa0521890:three_prime_UTR 35.0%
TCTGTATCCGATCGATGTTA+TGG + chr3_4:74919409-74919428 Msa0521890:five_prime_UTR 40.0%
! TCAAGAAGAGTATGGATGGA+TGG - chr3_4:74919462-74919481 None:intergenic 40.0%
! AGAGTCAAGAAGAGTATGGA+TGG - chr3_4:74919466-74919485 None:intergenic 40.0%
TCTTGGAATGGCCTAATGAA+AGG - chr3_4:74919548-74919567 None:intergenic 40.0%
ATCTTTAACGAAGGTGGTGA+TGG - chr3_4:74919588-74919607 None:intergenic 40.0%
GGCATTATCTTTAACGAAGG+TGG - chr3_4:74919594-74919613 None:intergenic 40.0%
GGTGGCATTATCTTTAACGA+AGG - chr3_4:74919597-74919616 None:intergenic 40.0%
AACGATCTCTGAATACCAAG+CGG - chr3_4:74919819-74919838 None:intergenic 40.0%
!!! GCTTTTGGTTTGAAATCTCC+TGG + chr3_4:74919870-74919889 Msa0521890:CDS 40.0%
AGCTTATGAGGAATCAGATG+AGG + chr3_4:74919982-74920001 Msa0521890:CDS 40.0%
GCTTATGAGGAATCAGATGA+GGG + chr3_4:74919983-74920002 Msa0521890:CDS 40.0%
ATTCCAATGCATGTACAGTG+TGG + chr3_4:74920091-74920110 Msa0521890:intron 40.0%
!! TAAGCGTGTGTTTGGCTTTA+CGG - chr3_4:74920536-74920555 None:intergenic 40.0%
TGACTACACTAGATTCGCAT+TGG + chr3_4:74920598-74920617 Msa0521890:intron 40.0%
TTGTGAACTTCATTGCAGGT+TGG + chr3_4:74920690-74920709 Msa0521890:intron 40.0%
AATACAGTGAATGGCAGAAG+AGG + chr3_4:74920790-74920809 Msa0521890:CDS 40.0%
! GCAGATTATTCATGCTGCTT+TGG + chr3_4:74920896-74920915 Msa0521890:CDS 40.0%
TTATTCTTCCCGGTTTCGAT+GGG - chr3_4:74920927-74920946 None:intergenic 40.0%
CTGTCATGTCTCTTGCAAAT+AGG + chr3_4:74920973-74920992 Msa0521890:CDS 40.0%
CTTGCAAATAGGTCGTATGA+TGG + chr3_4:74920984-74921003 Msa0521890:CDS 40.0%
!! TCTCACTGATTCATGTCACT+GGG + chr3_4:74921010-74921029 Msa0521890:CDS 40.0%
TCATAAATCCGGAGATTCAG+AGG - chr3_4:74921047-74921066 None:intergenic 40.0%
TGGAACAAATCAAGAAGACC+TGG + chr3_4:74921135-74921154 Msa0521890:CDS 40.0%
GGAACAAATCAAGAAGACCT+GGG + chr3_4:74921136-74921155 Msa0521890:CDS 40.0%
GAACAAATCAAGAAGACCTG+GGG + chr3_4:74921137-74921156 Msa0521890:CDS 40.0%
!! TTTCATCGATTTGTTGCCAC+TGG + chr3_4:74921212-74921231 Msa0521890:CDS 40.0%
!! CATTGACTTCGATATTGGGA+TGG + chr3_4:74921342-74921361 Msa0521890:CDS 40.0%
TCGTGGAAACGTTGAAACTA+TGG + chr3_4:74921403-74921422 Msa0521890:CDS 40.0%
TGGAAACGTTGAAACTATGG+AGG + chr3_4:74921406-74921425 Msa0521890:CDS 40.0%
GGAAACGTTGAAACTATGGA+GGG + chr3_4:74921407-74921426 Msa0521890:CDS 40.0%
AGTAAAAGGTGACAAACTCG+AGG + chr3_4:74921617-74921636 Msa0521890:intron 40.0%
TTAAGCACTATTACCATCGC+AGG - chr3_4:74921653-74921672 None:intergenic 40.0%
!! ATTTTGGGTGACTAAGCAAG+TGG + chr3_4:74921810-74921829 Msa0521890:intron 40.0%
!! TTTTGGGTGACTAAGCAAGT+GGG + chr3_4:74921811-74921830 Msa0521890:intron 40.0%
! TGTTGAGTTGTGCAAGTAAC+GGG + chr3_4:74921904-74921923 Msa0521890:intron 40.0%
!! CTAGCTTTTCATTAACTGCC+AGG - chr3_4:74922205-74922224 None:intergenic 40.0%
TCAGTCCAATACTCAAGAGA+TGG + chr3_4:74922228-74922247 Msa0521890:CDS 40.0%
ATTCGTTTCCATAGCATGCA+TGG - chr3_4:74922289-74922308 None:intergenic 40.0%
CAGTCTGTCTATTCTAGTCT+TGG - chr3_4:74922513-74922532 None:intergenic 40.0%
GAATAGACAGACTGAAAGAC+TGG + chr3_4:74922519-74922538 Msa0521890:CDS 40.0%
TGATAGAAATCTGCAGCAAG+AGG + chr3_4:74922544-74922563 Msa0521890:CDS 40.0%
!! TATCCTTCCTGATTTGCTTG+TGG - chr3_4:74922891-74922910 None:intergenic 40.0%
GCGAATCATAAATGAAACCC+TGG + chr3_4:74922935-74922954 Msa0521890:CDS 40.0%
AAGCTGAAAGAATGCATCCA+GGG - chr3_4:74922955-74922974 None:intergenic 40.0%
! AATGCAGGATGCATTGGTAT+TGG - chr3_4:74922978-74922997 None:intergenic 40.0%
CTTTGGCCACGTAATATTGA+AGG - chr3_4:74923034-74923053 None:intergenic 40.0%
GGCTCAAAATTTCAAGGCTT+TGG + chr3_4:74923226-74923245 Msa0521890:CDS 40.0%
! ACAAATGGGGATAGCTCTTT+TGG + chr3_4:74923301-74923320 Msa0521890:CDS 40.0%
! CAAATGGGGATAGCTCTTTT+GGG + chr3_4:74923302-74923321 Msa0521890:CDS 40.0%
TTTATGCGAACACAGAGTTG+TGG - chr3_4:74923331-74923350 None:intergenic 40.0%
AAATACTTTGCAGTGGATCC+TGG + chr3_4:74923348-74923367 Msa0521890:CDS 40.0%
AATACTTTGCAGTGGATCCT+GGG + chr3_4:74923349-74923368 Msa0521890:CDS 40.0%
! TTGTTTGTATTGCTTGCTGG+AGG + chr3_4:74923718-74923737 Msa0521890:CDS 40.0%
!! AGGTAATGGAATTCTAGACC+TGG - chr3_4:74923962-74923981 None:intergenic 40.0%
ATTCCATTACCTCCAACTTC+CGG + chr3_4:74923970-74923989 Msa0521890:CDS 40.0%
AGTTATTGGAATGGCAAGCT+GGG + chr3_4:74924119-74924138 Msa0521890:three_prime_UTR 40.0%
ATGCATTCTGCTCAAATGTC+TGG + chr3_4:74924144-74924163 Msa0521890:three_prime_UTR 40.0%
TGTCGATCAAGCTTTACTAC+TGG + chr3_4:74924216-74924235 Msa0521890:three_prime_UTR 40.0%
TCAAGCTTTACTACTGGACA+TGG + chr3_4:74924222-74924241 Msa0521890:three_prime_UTR 40.0%
GAAGATTAGAGATGTCTCTG+TGG + chr3_4:74924404-74924423 Msa0521890:three_prime_UTR 40.0%
GCTGCTACCATAACATCGAT+CGG - chr3_4:74919419-74919438 None:intergenic 45.0%
GTATTCATCGGAGAGATTGG+TGG - chr3_4:74919664-74919683 None:intergenic 45.0%
! GAGGTATTCATCGGAGAGAT+TGG - chr3_4:74919667-74919686 None:intergenic 45.0%
GAAGATCTCGTAGGCAGTTA+AGG - chr3_4:74919691-74919710 None:intergenic 45.0%
AACTTCTACGGCTGCTAGTA+AGG + chr3_4:74919839-74919858 Msa0521890:CDS 45.0%
GGCTGCTAGTAAGGTTAAGA+AGG + chr3_4:74919848-74919867 Msa0521890:CDS 45.0%
! GGTTTGAAATCTCCTGGTTC+TGG + chr3_4:74919876-74919895 Msa0521890:CDS 45.0%
CTCTTCTTAGAACCAGAACC+AGG - chr3_4:74919891-74919910 None:intergenic 45.0%
!! TCTGGTTCTAAGAAGAGTCC+TGG + chr3_4:74919894-74919913 Msa0521890:CDS 45.0%
TCTAAGAAGAGTCCTGGTTC+TGG + chr3_4:74919900-74919919 Msa0521890:CDS 45.0%
TTGAAACGACCGTTAACGGT+TGG + chr3_4:74919957-74919976 Msa0521890:CDS 45.0%
TGAAACGACCGTTAACGGTT+GGG + chr3_4:74919958-74919977 Msa0521890:CDS 45.0%
ATAAGCTCCCCAACCGTTAA+CGG - chr3_4:74919969-74919988 None:intergenic 45.0%
ACACCACACTGTACATGCAT+TGG - chr3_4:74920097-74920116 None:intergenic 45.0%
! CTTCATTGCAGGTTGGAAGA+AGG + chr3_4:74920697-74920716 Msa0521890:intron 45.0%
TGGAAGAAGGATTGAGTCTG+TGG + chr3_4:74920710-74920729 Msa0521890:CDS 45.0%
AGTTGCTGCATTAGCTCAAG+TGG - chr3_4:74920741-74920760 None:intergenic 45.0%
TGAGCTAATGCAGCAACTCA+AGG + chr3_4:74920743-74920762 Msa0521890:CDS 45.0%
AATGCAGCAACTCAAGGCTT+CGG + chr3_4:74920749-74920768 Msa0521890:CDS 45.0%
GCAGAGTTGGACTTATCCAA+AGG - chr3_4:74920861-74920880 None:intergenic 45.0%
GTTATTCTTCCCGGTTTCGA+TGG - chr3_4:74920928-74920947 None:intergenic 45.0%
CATGGACTCGTTATTCTTCC+CGG - chr3_4:74920937-74920956 None:intergenic 45.0%
GAAGAATAACGAGTCCATGC+AGG + chr3_4:74920938-74920957 Msa0521890:CDS 45.0%
AGAACTACGAAGAACCTGCA+TGG - chr3_4:74920955-74920974 None:intergenic 45.0%
!! CTCTCACTGATTCATGTCAC+TGG + chr3_4:74921009-74921028 Msa0521890:CDS 45.0%
ATTCATGTCACTGGGCAGAT+GGG + chr3_4:74921018-74921037 Msa0521890:CDS 45.0%
ATGGGATTCCTCTGAATCTC+CGG + chr3_4:74921036-74921055 Msa0521890:CDS 45.0%
AAGAAGACCTGGGGAATACT+TGG + chr3_4:74921146-74921165 Msa0521890:CDS 45.0%
GTTCAATCCAAGTATTCCCC+AGG - chr3_4:74921156-74921175 None:intergenic 45.0%
ACAGAAGCTCCAAATCCATC+TGG - chr3_4:74921238-74921257 None:intergenic 45.0%
! CTTTTGCAACTTCAGCTAGC+TGG - chr3_4:74921274-74921293 None:intergenic 45.0%
TATTGGGATGGGCAGAGAAA+AGG + chr3_4:74921354-74921373 Msa0521890:CDS 45.0%
!! ATGGAGGGCATTGTCTCTTT+AGG + chr3_4:74921422-74921441 Msa0521890:CDS 45.0%
!! TGGAGGGCATTGTCTCTTTA+GGG + chr3_4:74921423-74921442 Msa0521890:CDS 45.0%
AGCGGCTAAGATATTGCTTG+AGG + chr3_4:74921451-74921470 Msa0521890:CDS 45.0%
AGGTTTATCATCTCCTGCGA+TGG + chr3_4:74921637-74921656 Msa0521890:intron 45.0%
TTTGCAAGAATGGCAAGGAG+GGG - chr3_4:74922170-74922189 None:intergenic 45.0%
CTTTGCAAGAATGGCAAGGA+GGG - chr3_4:74922171-74922190 None:intergenic 45.0%
CATCCTTTGCAAGAATGGCA+AGG - chr3_4:74922175-74922194 None:intergenic 45.0%
GCCATTCTTGCAAAGGATGT+AGG + chr3_4:74922176-74922195 Msa0521890:CDS 45.0%
GCCTACATCCTTTGCAAGAA+TGG - chr3_4:74922180-74922199 None:intergenic 45.0%
GGATGCCATCTCTTGAGTAT+TGG - chr3_4:74922236-74922255 None:intergenic 45.0%
ACTCAAGAGATGGCATCCTT+TGG + chr3_4:74922238-74922257 Msa0521890:CDS 45.0%
GTTTCCATAGCATGCATGGA+GGG - chr3_4:74922285-74922304 None:intergenic 45.0%
TTTAAGAGCTGCAGACCAGT+TGG + chr3_4:74922361-74922380 Msa0521890:CDS 45.0%
GATAGCTGTTGAGGATTCAG+TGG + chr3_4:74922400-74922419 Msa0521890:CDS 45.0%
GATTCAGTGGACAGTGATGA+TGG + chr3_4:74922413-74922432 Msa0521890:CDS 45.0%
ATTGCACCTTCTGCTTCGTA+AGG - chr3_4:74922467-74922486 None:intergenic 45.0%
TTGGAGTCCACAAGCAAATC+AGG + chr3_4:74922881-74922900 Msa0521890:CDS 45.0%
AGTCCACAAGCAAATCAGGA+AGG + chr3_4:74922885-74922904 Msa0521890:CDS 45.0%
CGCAGAACTTCAACAGAAGA+TGG - chr3_4:74922918-74922937 None:intergenic 45.0%
GAAGCTGAAAGAATGCATCC+AGG - chr3_4:74922956-74922975 None:intergenic 45.0%
ATCACTTCAGGAAGCAATGC+AGG - chr3_4:74922993-74923012 None:intergenic 45.0%
TTGCTTCCTGAAGTGATGCA+TGG + chr3_4:74922996-74923015 Msa0521890:CDS 45.0%
TACGTGGCCAAAGCTAAATC+TGG + chr3_4:74923041-74923060 Msa0521890:CDS 45.0%
! ACCACAGCCAGATTTAGCTT+TGG - chr3_4:74923051-74923070 None:intergenic 45.0%
TTCTCAGAAGAGAAACTCGC+AGG + chr3_4:74923273-74923292 Msa0521890:CDS 45.0%
AACTCGCAGGTTGCAACAAA+TGG + chr3_4:74923286-74923305 Msa0521890:CDS 45.0%
ACTCGCAGGTTGCAACAAAT+GGG + chr3_4:74923287-74923306 Msa0521890:CDS 45.0%
CCAGAACATCAAATTCACCC+AGG - chr3_4:74923369-74923388 None:intergenic 45.0%
CCTGGGTGAATTTGATGTTC+TGG + chr3_4:74923366-74923385 Msa0521890:CDS 45.0%
CTGAATTCCTTCAAGACACG+CGG - chr3_4:74923485-74923504 None:intergenic 45.0%
AGGAATTCAGCAGCTATGTG+AGG + chr3_4:74923495-74923514 Msa0521890:CDS 45.0%
GGATCAATCCTGGAAGATGA+GGG - chr3_4:74923589-74923608 None:intergenic 45.0%
CTGAAGAAACGGATCAATCC+TGG - chr3_4:74923599-74923618 None:intergenic 45.0%
CAGGATTGATCCGTTTCTTC+AGG + chr3_4:74923597-74923616 Msa0521890:CDS 45.0%
CGCTCAAGTTCCTGAAGAAA+CGG - chr3_4:74923610-74923629 None:intergenic 45.0%
!! AAGGAGCTGTTTTGGGCAAA+TGG + chr3_4:74923802-74923821 Msa0521890:CDS 45.0%
!! AGGAGCTGTTTTGGGCAAAT+GGG + chr3_4:74923803-74923822 Msa0521890:CDS 45.0%
GCCTCATTGAGCAGTTTAGA+CGG + chr3_4:74923908-74923927 Msa0521890:CDS 45.0%
TCCGTCTAAACTGCTCAATG+AGG - chr3_4:74923912-74923931 None:intergenic 45.0%
CAGCTTGCCATTCCAATAAC+TGG - chr3_4:74924120-74924139 None:intergenic 45.0%
CAGTTATTGGAATGGCAAGC+TGG + chr3_4:74924118-74924137 Msa0521890:three_prime_UTR 45.0%
GGCAAGGTCGTACTAAATAC+AGG - chr3_4:74924175-74924194 None:intergenic 45.0%
GATAAATTACCTGCTGGGCA+AGG - chr3_4:74924191-74924210 None:intergenic 45.0%
TACACTGAGAACATTGGCCA+AGG + chr3_4:74924256-74924275 Msa0521890:three_prime_UTR 45.0%
ACACTGAGAACATTGGCCAA+GGG + chr3_4:74924257-74924276 Msa0521890:three_prime_UTR 45.0%
! TTTCTTTCGAGTCCGAAGTG+AGG + chr3_4:74924297-74924316 Msa0521890:three_prime_UTR 45.0%
GAGTGGAGAAGGAAGATCGT+CGG - chr3_4:74919631-74919650 None:intergenic 50.0%
GACGATCTTCCTTCTCCACT+CGG + chr3_4:74919630-74919649 Msa0521890:CDS 50.0%
GAAAGTTGACCGAGTGGAGA+AGG - chr3_4:74919642-74919661 None:intergenic 50.0%
TTGGTGGAAAGTTGACCGAG+TGG - chr3_4:74919648-74919667 None:intergenic 50.0%
TCTCGTAGGCAGTTAAGGTG+AGG - chr3_4:74919686-74919705 None:intergenic 50.0%
ACCAGAAGAGGTTCGACATG+CGG - chr3_4:74919718-74919737 None:intergenic 50.0%
ACTGAGAGGCTTACCAGAAG+AGG - chr3_4:74919730-74919749 None:intergenic 50.0%
!! AAGAGTCCTGGTTCTGGTTC+TGG + chr3_4:74919906-74919925 Msa0521890:CDS 50.0%
!! TCTGGTTCTGGTTCTGCTTC+CGG + chr3_4:74919918-74919937 Msa0521890:CDS 50.0%
!! TTCTGGTTCTGCTTCCGGTT+CGG + chr3_4:74919923-74919942 Msa0521890:CDS 50.0%
GAAACGACCGTTAACGGTTG+GGG + chr3_4:74919959-74919978 Msa0521890:CDS 50.0%
TAACGGTTGGGGAGCTTATG+AGG + chr3_4:74919970-74919989 Msa0521890:CDS 50.0%
!! GATGAGGGTTTCTGAAGCCA+TGG + chr3_4:74919998-74920017 Msa0521890:CDS 50.0%
GCGTTGCTCAGAATTTCTGC+TGG + chr3_4:74920038-74920057 Msa0521890:CDS 50.0%
GCTCAGAATTTCTGCTGGAC+AGG + chr3_4:74920043-74920062 Msa0521890:CDS 50.0%
ATGGCAGAAGAGGACTCTCA+AGG + chr3_4:74920800-74920819 Msa0521890:CDS 50.0%
GAAGAGGACTCTCAAGGTTC+TGG + chr3_4:74920806-74920825 Msa0521890:CDS 50.0%
TTGGATAGGCCCATCGAAAC+CGG + chr3_4:74920915-74920934 Msa0521890:CDS 50.0%
GATTCATGTCACTGGGCAGA+TGG + chr3_4:74921017-74921036 Msa0521890:CDS 50.0%
! ATTTGTTGCCACTGGCCAGA+TGG + chr3_4:74921220-74921239 Msa0521890:CDS 50.0%
GAGCTTCTGTCTGATGCTGA+TGG + chr3_4:74921248-74921267 Msa0521890:CDS 50.0%
!! GGAGGGCATTGTCTCTTTAG+GGG + chr3_4:74921424-74921443 Msa0521890:CDS 50.0%
! TGTCTCTTTAGGGGTAGCAG+CGG + chr3_4:74921433-74921452 Msa0521890:CDS 50.0%
!! TCTACGTACTGCTTTTGCCC+AGG + chr3_4:74921556-74921575 Msa0521890:CDS 50.0%
TGGAGAAAGCAGACTCAAGC+AGG + chr3_4:74922114-74922133 Msa0521890:CDS 50.0%
AGAAAGCAGACTCAAGCAGG+AGG + chr3_4:74922117-74922136 Msa0521890:CDS 50.0%
GAAAGCAGACTCAAGCAGGA+GGG + chr3_4:74922118-74922137 Msa0521890:CDS 50.0%
TTGCAAGAATGGCAAGGAGG+GGG - chr3_4:74922169-74922188 None:intergenic 50.0%
CCTTTGCAAGAATGGCAAGG+AGG - chr3_4:74922172-74922191 None:intergenic 50.0%
CCTCCTTGCCATTCTTGCAA+AGG + chr3_4:74922169-74922188 Msa0521890:CDS 50.0%
CGTTTCCATAGCATGCATGG+AGG - chr3_4:74922286-74922305 None:intergenic 50.0%
GCACAAGGTCTTTCTCCAAC+TGG - chr3_4:74922379-74922398 None:intergenic 50.0%
CCTCAACAGCTATCTGCACA+AGG - chr3_4:74922394-74922413 None:intergenic 50.0%
CCTTGTGCAGATAGCTGTTG+AGG + chr3_4:74922391-74922410 Msa0521890:CDS 50.0%
!! TCAGTGGACAGTGATGATGG+TGG + chr3_4:74922416-74922435 Msa0521890:CDS 50.0%
ATGCCTCCTTACGAAGCAGA+AGG + chr3_4:74922458-74922477 Msa0521890:CDS 50.0%
TGCTTGTGGACTCCAAAGCT+AGG - chr3_4:74922877-74922896 None:intergenic 50.0%
GGAAGCAATGCAGGATGCAT+TGG - chr3_4:74922984-74923003 None:intergenic 50.0%
TCTACGCCATGCATCACTTC+AGG - chr3_4:74923005-74923024 None:intergenic 50.0%
GCCAAAGCTAAATCTGGCTG+TGG + chr3_4:74923047-74923066 Msa0521890:CDS 50.0%
ATAGTGCATCTCGTCAGTGC+CGG - chr3_4:74923205-74923224 None:intergenic 50.0%
! GCACTGACGAGATGCACTAT+TGG + chr3_4:74923205-74923224 Msa0521890:CDS 50.0%
CTCGCAGGTTGCAACAAATG+GGG + chr3_4:74923288-74923307 Msa0521890:CDS 50.0%
TTGGAGATCCCTCATCTTCC+AGG + chr3_4:74923578-74923597 Msa0521890:CDS 50.0%
CGGATCAATCCTGGAAGATG+AGG - chr3_4:74923590-74923609 None:intergenic 50.0%
!! GGAGCTGTTTTGGGCAAATG+GGG + chr3_4:74923804-74923823 Msa0521890:CDS 50.0%
!! CTGTTTTGGGCAAATGGGGA+CGG + chr3_4:74923808-74923827 Msa0521890:CDS 50.0%
ACAGGTTTGCAACTACCCTG+AGG + chr3_4:74923851-74923870 Msa0521890:CDS 50.0%
AAGGGGAAGGATAGACCTCA+GGG - chr3_4:74923869-74923888 None:intergenic 50.0%
AAAGGGGAAGGATAGACCTC+AGG - chr3_4:74923870-74923889 None:intergenic 50.0%
! GGTCTATCCTTCCCCTTTTC+AGG + chr3_4:74923872-74923891 Msa0521890:CDS 50.0%
! TCTGTGTCGGTCCTGAAAAG+GGG - chr3_4:74923886-74923905 None:intergenic 50.0%
! CTCTGTGTCGGTCCTGAAAA+GGG - chr3_4:74923887-74923906 None:intergenic 50.0%
! TCTCTGTGTCGGTCCTGAAA+AGG - chr3_4:74923888-74923907 None:intergenic 50.0%
CTCAATGAGGCTCTCTGTGT+CGG - chr3_4:74923899-74923918 None:intergenic 50.0%
TGTCCGGAAGTTGGAGGTAA+TGG - chr3_4:74923976-74923995 None:intergenic 50.0%
TAAGGGACAACGCAATCCAG+AGG - chr3_4:74924548-74924567 None:intergenic 50.0%
TGGAGAAGGAAGATCGTCGG+CGG - chr3_4:74919628-74919647 None:intergenic 55.0%
GCAGAACCAGAACCAGAACC+AGG - chr3_4:74919915-74919934 None:intergenic 55.0%
!! TCTGGTTCTGCTTCCGGTTC+GGG + chr3_4:74919924-74919943 Msa0521890:CDS 55.0%
CAATTTCCCCTGACCCGAAC+CGG - chr3_4:74919940-74919959 None:intergenic 55.0%
ACGTCTCACACGCGAATCCA+TGG - chr3_4:74920018-74920037 None:intergenic 55.0%
! GAGGACTCTCAAGGTTCTGG+AGG + chr3_4:74920809-74920828 Msa0521890:CDS 55.0%
!! ACTCTCAAGGTTCTGGAGGC+TGG + chr3_4:74920813-74920832 Msa0521890:CDS 55.0%
TGGATAGGCCCATCGAAACC+GGG + chr3_4:74920916-74920935 Msa0521890:CDS 55.0%
! TGCCACTGGCCAGATGGATT+TGG + chr3_4:74921226-74921245 Msa0521890:CDS 55.0%
CTCCAAATCCATCTGGCCAG+TGG - chr3_4:74921231-74921250 None:intergenic 55.0%
GCTATTGCACGGATGCACCT+AGG - chr3_4:74921949-74921968 None:intergenic 55.0%
TGCAAAGGATGTAGGCAGCC+TGG + chr3_4:74922184-74922203 Msa0521890:CDS 55.0%
AGATGGCATCCTTTGGCAGC+AGG + chr3_4:74922245-74922264 Msa0521890:CDS 55.0%
ACAGCAAGACCTGCTGCCAA+AGG - chr3_4:74922257-74922276 None:intergenic 55.0%
TTTGGCAGCAGGTCTTGCTG+TGG + chr3_4:74922256-74922275 Msa0521890:CDS 55.0%
GCTACCCTCCATGCATGCTA+TGG + chr3_4:74922278-74922297 Msa0521890:CDS 55.0%
GCACCTTCTGCTTCGTAAGG+AGG - chr3_4:74922464-74922483 None:intergenic 55.0%
ATTCCTTCAAGACACGCGGC+TGG - chr3_4:74923481-74923500 None:intergenic 55.0%
TTCCGGGAAAAAGCCCGAGA+GGG - chr3_4:74923745-74923764 None:intergenic 55.0%
TGTCGGTCCTGAAAAGGGGA+AGG - chr3_4:74923882-74923901 None:intergenic 55.0%
TACCTCCAACTTCCGGACAG+TGG + chr3_4:74923977-74923996 Msa0521890:CDS 55.0%
ACCTCCAACTTCCGGACAGT+GGG + chr3_4:74923978-74923997 Msa0521890:CDS 55.0%
ATCAGATGGACCCCACTGTC+CGG - chr3_4:74923992-74924011 None:intergenic 55.0%
TTAGTACGACCTTGCCCAGC+AGG + chr3_4:74924179-74924198 Msa0521890:three_prime_UTR 55.0%
GAGAACATTGGCCAAGGGCT+TGG + chr3_4:74924262-74924281 Msa0521890:three_prime_UTR 55.0%
GAAGGAAGATCGTCGGCGGT+AGG - chr3_4:74919624-74919643 None:intergenic 60.0%
TGCGGCGACGAAGATCTCGT+AGG - chr3_4:74919700-74919719 None:intergenic 60.0%
GCCGCATGTCGAACCTCTTC+TGG + chr3_4:74919714-74919733 Msa0521890:CDS 60.0%
! CCAAGCGGCGAGTTCTGACT+CGG - chr3_4:74919804-74919823 None:intergenic 60.0%
!! TTCTGCTTCCGGTTCGGGTC+AGG + chr3_4:74919929-74919948 Msa0521890:CDS 60.0%
!! TCTGCTTCCGGTTCGGGTCA+GGG + chr3_4:74919930-74919949 Msa0521890:CDS 60.0%
AGTCCAACTCTGCTGCGCAG+CGG + chr3_4:74920868-74920887 Msa0521890:CDS 60.0%
!! GCAAGGAGGGGGAGAGCATT+TGG - chr3_4:74922158-74922177 None:intergenic 60.0%
!! CTCGTCAGTGCCGGCATTGT+TGG - chr3_4:74923196-74923215 None:intergenic 60.0%
TCTCCAGCCGCGTGTCTTGA+AGG + chr3_4:74923475-74923494 Msa0521890:CDS 60.0%
TCCGGGAAAAAGCCCGAGAG+GGG - chr3_4:74923744-74923763 None:intergenic 60.0%
CTTCCGGGAAAAAGCCCGAG+AGG - chr3_4:74923746-74923765 None:intergenic 60.0%
!! CTCTCGGGCTTTTTCCCGGA+AGG + chr3_4:74923744-74923763 Msa0521890:CDS 60.0%
CCTCCAACTTCCGGACAGTG+GGG + chr3_4:74923979-74923998 Msa0521890:CDS 60.0%
TGCCAGTAGCACCAAGCCCT+TGG - chr3_4:74924276-74924295 None:intergenic 60.0%
GGAAGATCGTCGGCGGTAGG+CGG - chr3_4:74919621-74919640 None:intergenic 65.0%
CCGAGTCAGAACTCGCCGCT+TGG + chr3_4:74919801-74919820 Msa0521890:CDS 65.0%
!! CTGCTTCCGGTTCGGGTCAG+GGG + chr3_4:74919931-74919950 Msa0521890:CDS 65.0%
!! GGAGGGGGAGAGCATTTGGC+TGG - chr3_4:74922154-74922173 None:intergenic 65.0%
! TGCTTGCTGGAGGCCCCTCT+CGG + chr3_4:74923728-74923747 Msa0521890:CDS 65.0%
!! GCCCCTCTCGGGCTTTTTCC+CGG + chr3_4:74923740-74923759 Msa0521890:CDS 65.0%
CCCCACTGTCCGGAAGTTGG+AGG - chr3_4:74923982-74924001 None:intergenic 65.0%
GGACCCCACTGTCCGGAAGT+TGG - chr3_4:74923985-74924004 None:intergenic 65.0%
!! GGCCAAGGGCTTGGTGCTAC+TGG + chr3_4:74924271-74924290 Msa0521890:three_prime_UTR 65.0%
AGATCGTCGGCGGTAGGCGG+TGG - chr3_4:74919618-74919637 None:intergenic 70.0%
CAGCCGCTGCGCAGCAGAGT+TGG - chr3_4:74920874-74920893 None:intergenic 70.0%
ACTCTGCTGCGCAGCGGCTG+CGG + chr3_4:74920874-74920893 Msa0521890:CDS 70.0%
! GCTTGCTGGAGGCCCCTCTC+GGG + chr3_4:74923729-74923748 Msa0521890:CDS 70.0%
TCGTCGGCGGTAGGCGGTGG+TGG - chr3_4:74919615-74919634 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 74919354 74924677 74919354 ID=Msa0521890;Name=Msa0521890
chr3_4 mRNA 74919354 74924677 74919354 ID=Msa0521890-mRNA-1;Parent=Msa0521890;Name=Msa0521890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=168|1|1|1|1|1|5|573|996
chr3_4 exon 74919354 74920064 74919354 ID=Msa0521890-mRNA-1:exon:21315;Parent=Msa0521890-mRNA-1
chr3_4 exon 74920708 74921577 74920708 ID=Msa0521890-mRNA-1:exon:21316;Parent=Msa0521890-mRNA-1
chr3_4 exon 74922110 74922565 74922110 ID=Msa0521890-mRNA-1:exon:21317;Parent=Msa0521890-mRNA-1
chr3_4 exon 74922879 74923068 74922879 ID=Msa0521890-mRNA-1:exon:21318;Parent=Msa0521890-mRNA-1
chr3_4 exon 74923173 74924677 74923173 ID=Msa0521890-mRNA-1:exon:21319;Parent=Msa0521890-mRNA-1
chr3_4 five_prime_UTR 74919354 74919521 74919354 ID=Msa0521890-mRNA-1:five_prime_utr;Parent=Msa0521890-mRNA-1
chr3_4 CDS 74919522 74920064 74919522 ID=Msa0521890-mRNA-1:cds;Parent=Msa0521890-mRNA-1
chr3_4 CDS 74920708 74921577 74920708 ID=Msa0521890-mRNA-1:cds;Parent=Msa0521890-mRNA-1
chr3_4 CDS 74922110 74922565 74922110 ID=Msa0521890-mRNA-1:cds;Parent=Msa0521890-mRNA-1
chr3_4 CDS 74922879 74923068 74922879 ID=Msa0521890-mRNA-1:cds;Parent=Msa0521890-mRNA-1
chr3_4 CDS 74923173 74924104 74923173 ID=Msa0521890-mRNA-1:cds;Parent=Msa0521890-mRNA-1
chr3_4 three_prime_UTR 74924105 74924677 74924105 ID=Msa0521890-mRNA-1:three_prime_utr;Parent=Msa0521890-mRNA-1
Gene Sequence

>Msa0521890

ATGGCTGCTCAACTCTTTAGAGACCTTTCATTAGGCCATTCCAAGAGAAGAGATTCAACAACACCATCACCACCTTCGTTAAAGATAATGCCACCACCGCCTACCGCCGACGATCTTCCTTCTCCACTCGGTCAACTTTCCACCAATCTCTCCGATGAATACCTCACCTTAACTGCCTACGAGATCTTCGTCGCCGCATGTCGAACCTCTTCTGGTAAGCCTCTCAGTTCATCAATTGCTAACTCCTCTTCCAACAACAATAATAGTCATTCTGACTCACCGAGTCAGAACTCGCCGCTTGGTATTCAGAGATCGTTAACTTCTACGGCTGCTAGTAAGGTTAAGAAGGCTTTTGGTTTGAAATCTCCTGGTTCTGGTTCTAAGAAGAGTCCTGGTTCTGGTTCTGGTTCTGCTTCCGGTTCGGGTCAGGGGAAATTGAAACGACCGTTAACGGTTGGGGAGCTTATGAGGAATCAGATGAGGGTTTCTGAAGCCATGGATTCGCGTGTGAGACGTGCGTTGCTCAGAATTTCTGCTGGACAGGTTGGAAGAAGGATTGAGTCTGTGGTTGTTCCACTTGAGCTAATGCAGCAACTCAAGGCTTCGGATTTTACTGATCAACAAGAATACAGTGAATGGCAGAAGAGGACTCTCAAGGTTCTGGAGGCTGGTCTAATTTTGCATCCTTACATACCTTTGGATAAGTCCAACTCTGCTGCGCAGCGGCTGCGGCAGATTATTCATGCTGCTTTGGATAGGCCCATCGAAACCGGGAAGAATAACGAGTCCATGCAGGTTCTTCGTAGTTCTGTCATGTCTCTTGCAAATAGGTCGTATGATGGATCTCTCACTGATTCATGTCACTGGGCAGATGGGATTCCTCTGAATCTCCGGATTTATGAAATGCTTCTACAATCTTGCTTTGATGTTAATGATGAATCGTCAATTATTGAAGATTTTGATGAGCTAATGGAACAAATCAAGAAGACCTGGGGAATACTTGGATTGAACCAGACGTATCATAATCTCTGTTTTACTTGGGTTTTATTTCATCGATTTGTTGCCACTGGCCAGATGGATTTGGAGCTTCTGTCTGATGCTGATGGCCAGCTAGCTGAAGTTGCAAAAGACGCAAAGACAACCAAAGATTCCGAGTATTCCAAAATTTTGAGTTCTACATTGACTTCGATATTGGGATGGGCAGAGAAAAGGCTTCTTGCATACCATGAAACTTTTGATCGTGGAAACGTTGAAACTATGGAGGGCATTGTCTCTTTAGGGGTAGCAGCGGCTAAGATATTGCTTGAGGATATATCTAATGAATATCGTCGGAGGAGAAGAAATGAAGTCAATGTTGCCCGAGAAAGAATTGAAACGTACATCAGGTCATCTCTACGTACTGCTTTTGCCCAGATAATGGAGAAAGCAGACTCAAGCAGGAGGGCATCAAGAAACCAGCCAAATGCTCTCCCCCTCCTTGCCATTCTTGCAAAGGATGTAGGCAGCCTGGCAGTTAATGAAAAGCTAGTGTTCAGTCCAATACTCAAGAGATGGCATCCTTTGGCAGCAGGTCTTGCTGTGGCTACCCTCCATGCATGCTATGGAAACGAATTGAAGCAATTCATTTCAGGTATCACAGAATTGACCCCTGATGCTGTTCAAGTTTTAAGAGCTGCAGACCAGTTGGAGAAAGACCTTGTGCAGATAGCTGTTGAGGATTCAGTGGACAGTGATGATGGTGGCAAAGCAATAATTCGCGAGATGCCTCCTTACGAAGCAGAAGGTGCAATTGCGAATCTCGTGAAAATATGGACCAAGACTAGAATAGACAGACTGAAAGACTGGGTTGATAGAAATCTGCAGCAAGAGCTTTGGAGTCCACAAGCAAATCAGGAAGGATACGCTCCATCTTCTGTTGAAGTTCTGCGAATCATAAATGAAACCCTGGATGCATTCTTTCAGCTTCCAATACCAATGCATCCTGCATTGCTTCCTGAAGTGATGCATGGCGTAGATAGATGCCTTCAATATTACGTGGCCAAAGCTAAATCTGGCTGTGGATCTCGAAATACATTTATTCCAACAATGCCGGCACTGACGAGATGCACTATTGGCTCAAAATTTCAAGGCTTTGGGAAGAAAAAAGATAAATCTCCAAATTCTCAGAAGAGAAACTCGCAGGTTGCAACAAATGGGGATAGCTCTTTTGGGATACCACAACTCTGTGTTCGCATAAATACTTTGCAGTGGATCCTGGGTGAATTTGATGTTCTGGAAAAAAGAATAATTACTCTTTTACGGAACTCAGAATCTGCCAGAGAAGAAGATTTTTCAAACGGATTAGCTAGTAAGTTTGAACTATCTCCAGCCGCGTGTCTTGAAGGAATTCAGCAGCTATGTGAGGCTGCAGCATATAGAATTGTCTTCCATGATCTAAGCCATGTTTTATGGGATAGTTTGTATGTTGGAGATCCCTCATCTTCCAGGATTGATCCGTTTCTTCAGGAACTTGAGCGAAACTTAATGTTCATTTCAGACAATGTTCATGAAAAAATTCGCACACGCATTATTACTGAAATAATGAGAGCTTCCTTTGATGGATTCTTGTTTGTATTGCTTGCTGGAGGCCCCTCTCGGGCTTTTTCCCGGAAGGATTCACAAATCATAGAGGATGATTTCAAAGTTCTAAAGGAGCTGTTTTGGGCAAATGGGGACGGCTTGCCTTCTGAAATAATAGACAGGTTTGCAACTACCCTGAGGTCTATCCTTCCCCTTTTCAGGACCGACACAGAGAGCCTCATTGAGCAGTTTAGACGGATAACAGTTGAGACATATAAATCTTCTGCCAGGTCTAGAATTCCATTACCTCCAACTTCCGGACAGTGGGGTCCATCTGATCCAAATACATTATTACGTGTTTTATGCTATAGAAATGATGAAGCAGCTTCAAAGTTTCTTAAAAAGACATATGATCTCCCTAAGAAACTTTAA
Protein sequence

>Msa0521890

MAAQLFRDLSLGHSKRRDSTTPSPPSLKIMPPPPTADDLPSPLGQLSTNLSDEYLTLTAYEIFVAACRTSSGKPLSSSIANSSSNNNNSHSDSPSQNSPLGIQRSLTSTAASKVKKAFGLKSPGSGSKKSPGSGSGSASGSGQGKLKRPLTVGELMRNQMRVSEAMDSRVRRALLRISAGQVGRRIESVVVPLELMQQLKASDFTDQQEYSEWQKRTLKVLEAGLILHPYIPLDKSNSAAQRLRQIIHAALDRPIETGKNNESMQVLRSSVMSLANRSYDGSLTDSCHWADGIPLNLRIYEMLLQSCFDVNDESSIIEDFDELMEQIKKTWGILGLNQTYHNLCFTWVLFHRFVATGQMDLELLSDADGQLAEVAKDAKTTKDSEYSKILSSTLTSILGWAEKRLLAYHETFDRGNVETMEGIVSLGVAAAKILLEDISNEYRRRRRNEVNVARERIETYIRSSLRTAFAQIMEKADSSRRASRNQPNALPLLAILAKDVGSLAVNEKLVFSPILKRWHPLAAGLAVATLHACYGNELKQFISGITELTPDAVQVLRAADQLEKDLVQIAVEDSVDSDDGGKAIIREMPPYEAEGAIANLVKIWTKTRIDRLKDWVDRNLQQELWSPQANQEGYAPSSVEVLRIINETLDAFFQLPIPMHPALLPEVMHGVDRCLQYYVAKAKSGCGSRNTFIPTMPALTRCTIGSKFQGFGKKKDKSPNSQKRNSQVATNGDSSFGIPQLCVRINTLQWILGEFDVLEKRIITLLRNSESAREEDFSNGLASKFELSPAACLEGIQQLCEAAAYRIVFHDLSHVLWDSLYVGDPSSSRIDPFLQELERNLMFISDNVHEKIRTRIITEIMRASFDGFLFVLLAGGPSRAFSRKDSQIIEDDFKVLKELFWANGDGLPSEIIDRFATTLRSILPLFRTDTESLIEQFRRITVETYKSSARSRIPLPPTSGQWGPSDPNTLLRVLCYRNDEAASKFLKKTYDLPKKL*