Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207680 | KEH37969.1 | 99.413 | 511 | 3 | 0 | 11 | 521 | 1 | 511 | 0.0 | 1055 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207680 | sp|O48780|KCS11_ARATH | 82.515 | 509 | 88 | 1 | 13 | 521 | 2 | 509 | 0.0 | 898 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207680 | A0A072V7F7 | 99.413 | 511 | 3 | 0 | 11 | 521 | 1 | 511 | 0.0 | 1055 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0207680 | 0.805200 | 1.497434e-49 | -8.615850e-47 |
| Msa0046200 | Msa0207680 | 0.804676 | 1.927189e-49 | -8.615850e-47 |
| Msa0091090 | Msa0207680 | -0.800760 | 1.238877e-48 | -8.615850e-47 |
| Msa0092220 | Msa0207680 | 0.803079 | 4.136894e-49 | -8.615850e-47 |
| Msa0163960 | Msa0207680 | -0.811037 | 8.554134e-51 | -8.615850e-47 |
| Msa0183200 | Msa0207680 | -0.804969 | 1.673282e-49 | -8.615850e-47 |
| Msa0192470 | Msa0207680 | 0.819585 | 1.074922e-52 | -8.615850e-47 |
| Msa0198210 | Msa0207680 | 0.824021 | 1.011359e-53 | -8.615850e-47 |
| Msa0207680 | Msa0207690 | 0.959479 | 1.732766e-117 | -8.615850e-47 |
| Msa0207680 | Msa0209360 | 0.925581 | 1.510862e-90 | -8.615850e-47 |
| Msa0207680 | Msa0216360 | 0.827189 | 1.795296e-54 | -8.615850e-47 |
| Msa0207680 | Msa0236940 | 0.829849 | 4.089863e-55 | -8.615850e-47 |
| Msa0207680 | Msa0242820 | 0.849712 | 2.712527e-60 | -8.615850e-47 |
| Msa0207680 | Msa0256550 | 0.810414 | 1.166218e-50 | -8.615850e-47 |
| Msa0207680 | Msa0267400 | 0.805303 | 1.424511e-49 | -8.615850e-47 |
| Msa0207680 | Msa0272840 | 0.817594 | 3.041030e-52 | -8.615850e-47 |
| Msa0207680 | Msa0287640 | 0.862853 | 3.776458e-64 | -8.615850e-47 |
| Msa0207680 | Msa0287660 | 0.862149 | 6.218531e-64 | -8.615850e-47 |
| Msa0207680 | Msa0295680 | 0.829062 | 6.350849e-55 | -8.615850e-47 |
| Msa0207680 | Msa0373050 | 0.836458 | 9.249204e-57 | -8.615850e-47 |
| Msa0207680 | Msa0373060 | 0.849093 | 4.034490e-60 | -8.615850e-47 |
| Msa0207680 | Msa0380980 | 0.823861 | 1.102601e-53 | -8.615850e-47 |
| Msa0207680 | Msa0381100 | 0.800112 | 1.679417e-48 | -8.615850e-47 |
| Msa0207680 | Msa0382860 | 0.845477 | 3.963465e-59 | -8.615850e-47 |
| Msa0207680 | Msa0383660 | 0.807075 | 6.033584e-50 | -8.615850e-47 |
| Msa0207680 | Msa0386880 | 0.825851 | 3.741099e-54 | -8.615850e-47 |
| Msa0207680 | Msa0421580 | 0.843073 | 1.753318e-58 | -8.615850e-47 |
| Msa0207680 | Msa0432940 | 0.833767 | 4.414939e-56 | -8.615850e-47 |
| Msa0207680 | Msa0432970 | 0.839255 | 1.767352e-57 | -8.615850e-47 |
| Msa0207680 | Msa0467600 | 0.826103 | 3.259520e-54 | -8.615850e-47 |
| Msa0207680 | Msa0476960 | 0.808141 | 3.583801e-50 | -8.615850e-47 |
| Msa0207680 | Msa0477030 | 0.837538 | 4.900766e-57 | -8.615850e-47 |
| Msa0207680 | Msa0510120 | 0.828114 | 1.075973e-54 | -8.615850e-47 |
| Msa0207680 | Msa0521890 | 0.821127 | 4.762912e-53 | -8.615850e-47 |
| Msa0207680 | Msa0545820 | 0.837229 | 5.880668e-57 | -8.615850e-47 |
| Msa0207680 | Msa0559460 | 0.837119 | 6.271884e-57 | -8.615850e-47 |
| Msa0207680 | Msa0559660 | 0.858897 | 6.009519e-63 | -8.615850e-47 |
| Msa0207680 | Msa0575380 | 0.853793 | 1.888724e-61 | -8.615850e-47 |
| Msa0207680 | Msa0576180 | 0.870042 | 1.967181e-66 | -8.615850e-47 |
| Msa0207680 | Msa0581370 | 0.829382 | 5.312426e-55 | -8.615850e-47 |
| Msa0207680 | Msa0581380 | 0.803775 | 2.967128e-49 | -8.615850e-47 |
| Msa0207680 | Msa0597700 | 0.823982 | 1.032918e-53 | -8.615850e-47 |
| Msa0207680 | Msa0608050 | 0.814190 | 1.747999e-51 | -8.615850e-47 |
| Msa0207680 | Msa0608060 | 0.847783 | 9.292513e-60 | -8.615850e-47 |
| Msa0207680 | Msa0608820 | 0.800541 | 1.373172e-48 | -8.615850e-47 |
| Msa0207680 | Msa0610700 | -0.813668 | 2.277677e-51 | -8.615850e-47 |
| Msa0207680 | Msa0627580 | 0.844916 | 5.622016e-59 | -8.615850e-47 |
| Msa0207680 | Msa0641960 | 0.812828 | 3.482531e-51 | -8.615850e-47 |
| Msa0207680 | Msa0647320 | 0.853052 | 3.083033e-61 | -8.615850e-47 |
| Msa0207680 | Msa0648440 | 0.841641 | 4.201255e-58 | -8.615850e-47 |
| Msa0207680 | Msa0654420 | 0.865427 | 5.952389e-65 | -8.615850e-47 |
| Msa0207680 | Msa0654480 | 0.874834 | 4.954025e-68 | -8.615850e-47 |
| Msa0207680 | Msa0690190 | 0.819712 | 1.005511e-52 | -8.615850e-47 |
| Msa0207680 | Msa0690930 | 0.862042 | 6.706853e-64 | -8.615850e-47 |
| Msa0207680 | Msa0719740 | 0.876604 | 1.223762e-68 | -8.615850e-47 |
| Msa0207680 | Msa0758400 | 0.824341 | 8.506784e-54 | -8.615850e-47 |
| Msa0207680 | Msa0802750 | 0.879763 | 9.557314e-70 | -8.615850e-47 |
| Msa0207680 | Msa0841060 | 0.863114 | 3.135550e-64 | -8.615850e-47 |
| Msa0207680 | Msa0887100 | -0.862885 | 3.689628e-64 | -8.615850e-47 |
| Msa0207680 | Msa0913140 | -0.852429 | 4.642361e-61 | -8.615850e-47 |
| Msa0207680 | Msa0930210 | 0.891192 | 4.972154e-74 | -8.615850e-47 |
| Msa0207680 | Msa0932140 | 0.811223 | 7.793243e-51 | -8.615850e-47 |
| Msa0207680 | Msa0950470 | -0.841911 | 3.565355e-58 | -8.615850e-47 |
| Msa0207680 | Msa0950570 | -0.838285 | 3.150038e-57 | -8.615850e-47 |
| Msa0207680 | Msa1024570 | 0.827903 | 1.209851e-54 | -8.615850e-47 |
| Msa0207680 | Msa1026770 | 0.804347 | 2.256420e-49 | -8.615850e-47 |
| Msa0207680 | Msa1026800 | 0.800789 | 1.222126e-48 | -8.615850e-47 |
| Msa0207680 | Msa1031180 | 0.871065 | 9.078305e-67 | -8.615850e-47 |
| Msa0207680 | Msa1070360 | 0.862789 | 3.951612e-64 | -8.615850e-47 |
| Msa0207680 | Msa1075320 | 0.800217 | 1.598183e-48 | -8.615850e-47 |
| Msa0207680 | Msa1088150 | 0.813809 | 2.120460e-51 | -8.615850e-47 |
| Msa0207680 | Msa1088160 | 0.856441 | 3.211064e-62 | -8.615850e-47 |
| Msa0207680 | Msa1111770 | 0.813888 | 2.038091e-51 | -8.615850e-47 |
| Msa0207680 | Msa1119430 | 0.870228 | 1.709758e-66 | -8.615850e-47 |
| Msa0207680 | Msa1127910 | 0.807968 | 3.900098e-50 | -8.615850e-47 |
| Msa0207680 | Msa1158200 | 0.823774 | 1.155766e-53 | -8.615850e-47 |
| Msa0207680 | Msa1162750 | 0.828442 | 8.971404e-55 | -8.615850e-47 |
| Msa0207680 | Msa1175380 | 0.816783 | 4.628207e-52 | -8.615850e-47 |
| Msa0207680 | Msa1190350 | -0.802039 | 6.779252e-49 | -8.615850e-47 |
| Msa0207680 | Msa1200270 | 0.818443 | 1.954913e-52 | -8.615850e-47 |
| Msa0207680 | Msa1200290 | 0.808242 | 3.410621e-50 | -8.615850e-47 |
| Msa0207680 | Msa1209160 | -0.814771 | 1.299978e-51 | -8.615850e-47 |
| Msa0207680 | Msa1221290 | 0.823012 | 1.741986e-53 | -8.615850e-47 |
| Msa0207680 | Msa1235470 | 0.821522 | 3.860445e-53 | -8.615850e-47 |
| Msa0207680 | Msa1236860 | -0.863587 | 2.238685e-64 | -8.615850e-47 |
| Msa0207680 | Msa1255020 | -0.809997 | 1.434689e-50 | -8.615850e-47 |
| Msa0207680 | Msa1277350 | 0.803358 | 3.620790e-49 | -8.615850e-47 |
| Msa0207680 | Msa1295470 | -0.811404 | 7.121137e-51 | -8.615850e-47 |
| Msa0207680 | Msa1303760 | -0.804260 | 2.352183e-49 | -8.615850e-47 |
| Msa0207680 | Msa1303820 | -0.810662 | 1.031074e-50 | -8.615850e-47 |
| Msa0207680 | Msa1315760 | 0.834148 | 3.542912e-56 | -8.615850e-47 |
| Msa0207680 | Msa1317240 | -0.848887 | 4.600759e-60 | -8.615850e-47 |
| Msa0207680 | Msa1332690 | -0.803944 | 2.737062e-49 | -8.615850e-47 |
| Msa0207680 | Msa1333210 | 0.804574 | 2.023765e-49 | -8.615850e-47 |
| Msa0207680 | Msa1337450 | 0.865744 | 4.727818e-65 | -8.615850e-47 |
| Msa0207680 | Msa1363070 | -0.813920 | 2.004698e-51 | -8.615850e-47 |
| Msa0207680 | Msa1371300 | 0.835311 | 1.807006e-56 | -8.615850e-47 |
| Msa0207680 | Msa1375130 | 0.806584 | 7.664281e-50 | -8.615850e-47 |
| Msa0207680 | Msa1404680 | 0.809224 | 2.103349e-50 | -8.615850e-47 |
| Msa0207680 | Msa1412500 | 0.806501 | 7.978690e-50 | -8.615850e-47 |
| Msa0207680 | Msa1455400 | 0.823485 | 1.350787e-53 | -8.615850e-47 |
| Msa0207680 | Msa1457770 | 0.800908 | 1.155959e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207680 | MtrunA17_Chr4g0063011 | 89.558 | 498 | 52 | 0 | 24 | 521 | 3 | 500 | 0.0 | 939 |
| Msa0207680 | MtrunA17_Chr1g0188051 | 75.692 | 506 | 123 | 0 | 16 | 521 | 7 | 512 | 0.0 | 823 |
| Msa0207680 | MtrunA17_Chr1g0166191 | 77.688 | 493 | 110 | 0 | 29 | 521 | 26 | 518 | 0.0 | 818 |
| Msa0207680 | MtrunA17_Chr2g0306781 | 98.933 | 375 | 4 | 0 | 147 | 521 | 31 | 405 | 0.0 | 776 |
| Msa0207680 | MtrunA17_Chr4g0035081 | 68.635 | 491 | 153 | 1 | 25 | 515 | 13 | 502 | 0.0 | 712 |
| Msa0207680 | MtrunA17_Chr7g0276251 | 65.737 | 502 | 157 | 6 | 27 | 516 | 31 | 529 | 0.0 | 667 |
| Msa0207680 | MtrunA17_Chr1g0209881 | 63.136 | 491 | 180 | 1 | 28 | 518 | 4 | 493 | 0.0 | 637 |
| Msa0207680 | MtrunA17_Chr5g0423521 | 60.081 | 491 | 195 | 1 | 28 | 518 | 4 | 493 | 0.0 | 616 |
| Msa0207680 | MtrunA17_Chr7g0250661 | 98.644 | 295 | 4 | 0 | 227 | 521 | 1 | 295 | 0.0 | 610 |
| Msa0207680 | MtrunA17_Chr6g0480561 | 60.699 | 458 | 174 | 2 | 66 | 517 | 13 | 470 | 0.0 | 576 |
| Msa0207680 | MtrunA17_Chr3g0136561 | 57.050 | 461 | 187 | 3 | 66 | 515 | 443 | 903 | 0.0 | 573 |
| Msa0207680 | MtrunA17_Chr2g0282281 | 53.734 | 482 | 209 | 5 | 29 | 507 | 33 | 503 | 3.09e-171 | 493 |
| Msa0207680 | MtrunA17_Chr2g0295781 | 49.890 | 455 | 210 | 7 | 73 | 515 | 3 | 451 | 3.69e-157 | 455 |
| Msa0207680 | MtrunA17_Chr2g0277841 | 52.683 | 410 | 191 | 3 | 108 | 516 | 45 | 452 | 8.54e-157 | 454 |
| Msa0207680 | MtrunA17_Chr7g0276241 | 65.052 | 289 | 94 | 2 | 227 | 513 | 1 | 284 | 2.80e-139 | 404 |
| Msa0207680 | MtrunA17_Chr1g0204301 | 47.059 | 408 | 215 | 1 | 107 | 513 | 77 | 484 | 4.65e-135 | 400 |
| Msa0207680 | MtrunA17_Chr7g0250651 | 98.925 | 186 | 2 | 0 | 11 | 196 | 1 | 186 | 6.82e-131 | 378 |
| Msa0207680 | MtrunA17_Chr3g0115021 | 46.472 | 411 | 218 | 2 | 104 | 513 | 74 | 483 | 3.59e-130 | 387 |
| Msa0207680 | MtrunA17_Chr3g0115041 | 46.472 | 411 | 218 | 2 | 104 | 513 | 74 | 483 | 4.00e-130 | 387 |
| Msa0207680 | MtrunA17_Chr6g0469631 | 46.535 | 404 | 214 | 2 | 111 | 513 | 80 | 482 | 1.13e-121 | 365 |
| Msa0207680 | MtrunA17_Chr6g0461631 | 63.922 | 255 | 92 | 0 | 262 | 516 | 3 | 257 | 1.13e-119 | 352 |
| Msa0207680 | MtrunA17_Chr4g0026871 | 68.142 | 226 | 71 | 1 | 291 | 515 | 2 | 227 | 1.25e-109 | 325 |
| Msa0207680 | MtrunA17_Chr1g0212951 | 39.954 | 433 | 227 | 7 | 108 | 514 | 28 | 453 | 9.61e-109 | 332 |
| Msa0207680 | MtrunA17_Chr4g0030601 | 39.817 | 437 | 245 | 6 | 86 | 512 | 5 | 433 | 1.11e-106 | 326 |
| Msa0207680 | MtrunA17_Chr4g0030591 | 38.170 | 448 | 250 | 5 | 82 | 512 | 5 | 442 | 5.83e-106 | 325 |
| Msa0207680 | MtrunA17_Chr2g0327721 | 39.813 | 427 | 226 | 6 | 108 | 512 | 27 | 444 | 3.73e-104 | 320 |
| Msa0207680 | MtrunA17_Chr4g0030581 | 38.288 | 444 | 254 | 4 | 82 | 512 | 5 | 441 | 4.36e-102 | 315 |
| Msa0207680 | MtrunA17_Chr4g0026791 | 62.360 | 178 | 66 | 1 | 291 | 467 | 2 | 179 | 1.64e-74 | 233 |
| Msa0207680 | MtrunA17_Chr4g0026721 | 67.296 | 159 | 52 | 0 | 357 | 515 | 1 | 159 | 1.34e-73 | 230 |
| Msa0207680 | MtrunA17_Chr6g0461621 | 49.145 | 234 | 111 | 4 | 43 | 274 | 2 | 229 | 7.92e-68 | 218 |
| Msa0207680 | MtrunA17_Chr4g0026861 | 49.519 | 208 | 99 | 2 | 63 | 265 | 9 | 215 | 3.51e-65 | 210 |
| Msa0207680 | MtrunA17_Chr4g0026801 | 47.967 | 123 | 64 | 0 | 86 | 208 | 36 | 158 | 5.88e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207680 | AT2G26640.1 | 82.515 | 509 | 88 | 1 | 13 | 521 | 2 | 509 | 0.0 | 898 |
| Msa0207680 | AT1G04220.1 | 71.881 | 505 | 133 | 5 | 25 | 521 | 18 | 521 | 0.0 | 763 |
| Msa0207680 | AT5G43760.1 | 74.037 | 493 | 122 | 3 | 35 | 521 | 34 | 526 | 0.0 | 734 |
| Msa0207680 | AT1G19440.1 | 68.712 | 489 | 152 | 1 | 25 | 513 | 25 | 512 | 0.0 | 714 |
| Msa0207680 | AT2G16280.1 | 67.894 | 489 | 156 | 1 | 27 | 515 | 23 | 510 | 0.0 | 704 |
| Msa0207680 | AT1G01120.1 | 62.828 | 495 | 178 | 3 | 27 | 515 | 32 | 526 | 0.0 | 659 |
| Msa0207680 | AT1G68530.1 | 61.837 | 490 | 186 | 1 | 29 | 518 | 6 | 494 | 0.0 | 644 |
| Msa0207680 | AT4G34510.1 | 63.312 | 477 | 168 | 3 | 40 | 515 | 15 | 485 | 0.0 | 636 |
| Msa0207680 | AT1G25450.1 | 61.224 | 490 | 189 | 1 | 29 | 518 | 1 | 489 | 0.0 | 627 |
| Msa0207680 | AT2G26250.1 | 54.962 | 524 | 205 | 4 | 18 | 513 | 28 | 548 | 0.0 | 599 |
| Msa0207680 | AT4G34520.1 | 57.819 | 486 | 193 | 3 | 41 | 515 | 6 | 490 | 0.0 | 572 |
| Msa0207680 | AT4G34250.1 | 57.851 | 484 | 197 | 3 | 38 | 515 | 5 | 487 | 0.0 | 572 |
| Msa0207680 | AT2G15090.1 | 58.511 | 470 | 184 | 5 | 55 | 515 | 12 | 479 | 0.0 | 557 |
| Msa0207680 | AT2G46720.1 | 60.142 | 424 | 164 | 2 | 97 | 515 | 42 | 465 | 0.0 | 552 |
| Msa0207680 | AT3G10280.1 | 58.962 | 424 | 162 | 3 | 97 | 515 | 42 | 458 | 0.0 | 533 |
| Msa0207680 | AT1G71160.1 | 50.943 | 424 | 204 | 4 | 92 | 513 | 25 | 446 | 6.21e-158 | 457 |
| Msa0207680 | AT1G68530.2 | 57.849 | 344 | 145 | 0 | 29 | 372 | 6 | 349 | 1.19e-145 | 423 |
| Msa0207680 | AT5G49070.1 | 49.412 | 425 | 207 | 4 | 97 | 516 | 35 | 456 | 2.96e-144 | 423 |
| Msa0207680 | AT3G52160.1 | 44.969 | 487 | 197 | 5 | 30 | 504 | 22 | 449 | 2.61e-141 | 415 |
| Msa0207680 | AT3G52160.2 | 50.959 | 365 | 148 | 2 | 140 | 504 | 3 | 336 | 1.34e-130 | 384 |
| Msa0207680 | AT5G04530.1 | 39.623 | 424 | 245 | 5 | 97 | 512 | 17 | 437 | 1.48e-106 | 327 |
| Msa0207680 | AT2G28630.2 | 40.515 | 427 | 225 | 7 | 108 | 512 | 27 | 446 | 2.22e-106 | 326 |
| Msa0207680 | AT2G28630.1 | 40.515 | 427 | 225 | 7 | 108 | 512 | 27 | 446 | 2.22e-106 | 326 |
| Msa0207680 | AT1G07720.1 | 40.758 | 422 | 232 | 4 | 108 | 512 | 27 | 447 | 2.69e-105 | 323 |
| Msa0207680 | AT1G07720.2 | 40.758 | 422 | 232 | 4 | 108 | 512 | 70 | 490 | 3.86e-105 | 325 |
| Msa0207680 | AT5G49070.2 | 44.444 | 279 | 154 | 1 | 97 | 374 | 35 | 313 | 6.52e-80 | 253 |
| Msa0207680 | AT4G34850.2 | 25.483 | 259 | 149 | 10 | 246 | 492 | 91 | 317 | 3.49e-12 | 68.2 |
| Msa0207680 | AT4G34850.1 | 25.483 | 259 | 149 | 10 | 246 | 492 | 164 | 390 | 7.61e-12 | 67.8 |
Find 157 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGATATCTATGATATC+TGG | 0.226248 | 2_1:-40313355 | Msa0207680:CDS |
| ATGCACTAAGAGGATATTTA+TGG | 0.261715 | 2_1:-40313192 | Msa0207680:CDS |
| AGAATGACGCTTTATCGTTT+TGG | 0.265103 | 2_1:-40312255 | Msa0207680:CDS |
| TACTTTATCAAAAGATCTTA+TGG | 0.267099 | 2_1:-40312523 | Msa0207680:CDS |
| GGTGGGATGGGATGCAGTGC+TGG | 0.280642 | 2_1:-40312843 | Msa0207680:CDS |
| CGATGAGATCCACCAGTTTC+CGG | 0.286351 | 2_1:-40312058 | Msa0207680:CDS |
| TTCCTAGCTTCTTTCATTGA+AGG | 0.317480 | 2_1:+40313044 | None:intergenic |
| ATTTAGATGGCAGAAATTCT+TGG | 0.321018 | 2_1:+40312027 | None:intergenic |
| ATCAGAATTCCAATGTCTTT+AGG | 0.328553 | 2_1:+40312960 | None:intergenic |
| AGCTTGAAATCCGGAATATA+AGG | 0.330746 | 2_1:+40312375 | None:intergenic |
| GGTGTGGACCAATTGGTATT+TGG | 0.335798 | 2_1:+40312626 | None:intergenic |
| TGGCAAATAGCATTTGGTTC+TGG | 0.340846 | 2_1:-40312153 | Msa0207680:CDS |
| AAAACAAACATTACCACGTT+GGG | 0.342115 | 2_1:-40312480 | Msa0207680:CDS |
| GTGCATTTGCGAGACTCTTC+CGG | 0.354359 | 2_1:+40313209 | None:intergenic |
| CAAGTTCTGGTCTTGAGGTT+TGG | 0.356478 | 2_1:-40311878 | Msa0207680:three_prime_UTR |
| TCCTTTCTTGATCCTTCCCT+TGG | 0.368172 | 2_1:+40312185 | None:intergenic |
| CTGCAATTCTACTTTCCAAC+AGG | 0.368912 | 2_1:-40312668 | Msa0207680:CDS |
| AAAGATCTTATGGCCGTTGC+AGG | 0.375775 | 2_1:-40312513 | Msa0207680:CDS |
| TTCGAATTGTTTGTTCCGTA+TGG | 0.380907 | 2_1:-40312697 | Msa0207680:CDS |
| AGCTTCTTTCATTGAAGGAT+TGG | 0.386247 | 2_1:+40313049 | None:intergenic |
| ACACATTCTTTCTATTGAAA+TGG | 0.387431 | 2_1:-40311751 | Msa0207680:three_prime_UTR |
| ATTCTGATATAGTCAAGTTC+TGG | 0.388584 | 2_1:-40311891 | Msa0207680:three_prime_UTR |
| AGCTGTTGAACTGGTGGAAC+TGG | 0.396378 | 2_1:-40311956 | Msa0207680:three_prime_UTR |
| TTTAAACTACATCATTTAGA+TGG | 0.399579 | 2_1:+40312014 | None:intergenic |
| TTTGCTTTGAAAGTTAGATT+TGG | 0.400269 | 2_1:-40311917 | Msa0207680:three_prime_UTR |
| ACAACCAACGCATACGAGTT+AGG | 0.410167 | 2_1:+40312777 | None:intergenic |
| AAGCTTGGATCGATCGTTCC+CGG | 0.410332 | 2_1:+40312722 | None:intergenic |
| AGGACGAGTCATAAAGTAAA+AGG | 0.410912 | 2_1:+40313268 | None:intergenic |
| GCTTCTTTCATTGAAGGATT+GGG | 0.411634 | 2_1:+40313050 | None:intergenic |
| CTGTTCTTCGGTACGTTAGT+TGG | 0.413011 | 2_1:-40312426 | Msa0207680:CDS |
| TTGGAACATCGACCGGAAAC+TGG | 0.414672 | 2_1:+40312046 | None:intergenic |
| GAAGATAAAGCCTTATATTC+CGG | 0.417524 | 2_1:-40312385 | Msa0207680:CDS |
| GCGCAGTATGGAAGGCTCTA+AGG | 0.417809 | 2_1:-40312116 | Msa0207680:CDS |
| AGAACATGGCAAATAGCATT+TGG | 0.419756 | 2_1:-40312159 | Msa0207680:CDS |
| GAAGCGGAGGCAGTTATGTT+TGG | 0.419896 | 2_1:-40313020 | Msa0207680:CDS |
| TCAAGTGCAACAGCGCAGTA+TGG | 0.422431 | 2_1:-40312128 | Msa0207680:CDS |
| GGAATGCTTAGAACAGCTTC+TGG | 0.428265 | 2_1:+40313074 | None:intergenic |
| TGGAGAACATCACGTTGAAT+TGG | 0.436866 | 2_1:-40312749 | Msa0207680:CDS |
| ATCCTTGAGAGATCTGGTCT+TGG | 0.439851 | 2_1:-40313113 | Msa0207680:CDS |
| CGAAAGATCCTTGAGAGATC+TGG | 0.441571 | 2_1:-40313119 | Msa0207680:CDS |
| TGCGAACGGTGTGGACCAAT+TGG | 0.448066 | 2_1:+40312619 | None:intergenic |
| GAAGCTGTCTCCATGGCATA+TGG | 0.449190 | 2_1:-40312286 | Msa0207680:CDS |
| GGTACATGCCATGAGTGATT+AGG | 0.451469 | 2_1:+40313432 | None:intergenic |
| CAGTTCGCTTTGGTACGAAT+TGG | 0.453655 | 2_1:-40312220 | Msa0207680:CDS |
| GTGGGATGGGATGCAGTGCT+GGG | 0.466651 | 2_1:-40312842 | Msa0207680:CDS |
| ACACCTCGAGCAGTTCGCTT+TGG | 0.468976 | 2_1:-40312230 | Msa0207680:CDS |
| CCTCTTTCTTTCACCACTTG+TGG | 0.470663 | 2_1:-40313411 | Msa0207680:CDS |
| CGATAAAGCGTCATTCTTGA+CGG | 0.471823 | 2_1:+40312261 | None:intergenic |
| TCCGAACAGCTGCTGTTCTT+CGG | 0.473876 | 2_1:-40312438 | Msa0207680:CDS |
| CAATGATATCTATGATATCT+GGG | 0.474517 | 2_1:-40313354 | Msa0207680:CDS |
| CGACGACGATGGCGCTAACA+AGG | 0.474648 | 2_1:+40313517 | None:intergenic |
| GAGAAGATCCAAATACCAAT+TGG | 0.476259 | 2_1:-40312634 | Msa0207680:CDS |
| TCGAATTGTTTGTTCCGTAT+GGG | 0.486272 | 2_1:-40312696 | Msa0207680:CDS |
| ATCTCTCAAGGATCTTTCGT+TGG | 0.488205 | 2_1:+40313123 | None:intergenic |
| TTTACTTTATGACTCGTCCT+AGG | 0.488605 | 2_1:-40313265 | Msa0207680:CDS |
| ACCGAAGAACAGCAGCTGTT+CGG | 0.501657 | 2_1:+40312437 | None:intergenic |
| GAAGACGACAATGGCAAAGT+TGG | 0.504336 | 2_1:-40312549 | Msa0207680:CDS |
| ACGGGAAAATTTCAACTGAT+AGG | 0.508478 | 2_1:+40311676 | None:intergenic |
| AACATAATGAGTTACAATCT+TGG | 0.513615 | 2_1:-40312864 | Msa0207680:CDS |
| ATTGTTTGTTCCGTATGGGA+GGG | 0.513671 | 2_1:-40312692 | Msa0207680:CDS |
| TCAAAAGCTAGCTTGAAATC+CGG | 0.514010 | 2_1:+40312366 | None:intergenic |
| ATCTAAAACAGCTCTTCCAC+CGG | 0.515874 | 2_1:+40312326 | None:intergenic |
| GCCAAGGGAAGGATCAAGAA+AGG | 0.516116 | 2_1:-40312186 | Msa0207680:CDS |
| GAGTTACAATCTTGGTGGGA+TGG | 0.516163 | 2_1:-40312856 | Msa0207680:CDS |
| GAAATTCTTGGAACATCGAC+CGG | 0.516259 | 2_1:+40312039 | None:intergenic |
| ATCACGTTGAATTGGTATCC+CGG | 0.518078 | 2_1:-40312741 | Msa0207680:CDS |
| AGCTTGGATCGATCGTTCCC+GGG | 0.518481 | 2_1:+40312723 | None:intergenic |
| AAATCGACAATACATGTGAA+TGG | 0.518712 | 2_1:+40314135 | None:intergenic |
| AATGTAATCCATGATTTGCT+TGG | 0.519045 | 2_1:-40311795 | Msa0207680:three_prime_UTR |
| TTGTTTGTTCCGTATGGGAG+GGG | 0.520242 | 2_1:-40312691 | Msa0207680:CDS |
| CAAACAATTCGAAACAAGCT+TGG | 0.524897 | 2_1:+40312707 | None:intergenic |
| CTCCAAGACCAGATCTCTCA+AGG | 0.527098 | 2_1:+40313111 | None:intergenic |
| GTGCAACAGCGCAGTATGGA+AGG | 0.529765 | 2_1:-40312124 | Msa0207680:CDS |
| CCACACCGTTCGCACTAACA+AGG | 0.531499 | 2_1:-40312610 | Msa0207680:CDS |
| TCTCCTATCCGATCCCCTGT+TGG | 0.533862 | 2_1:+40312653 | None:intergenic |
| CTACAAAAGAGAAGAACCCT+TGG | 0.534529 | 2_1:-40312083 | Msa0207680:CDS |
| GAGGGCGAGTGGTTTCTTCA+CGG | 0.536357 | 2_1:-40313162 | Msa0207680:CDS |
| AGTCTCGCAAATGCACTAAG+AGG | 0.536367 | 2_1:-40313202 | Msa0207680:CDS |
| ATTGCAGAGAGTGACGGAGT+TGG | 0.537030 | 2_1:+40312915 | None:intergenic |
| TCTACTTTCCAACAGGGGAT+CGG | 0.537137 | 2_1:-40312661 | Msa0207680:CDS |
| AATTGTTTGTTCCGTATGGG+AGG | 0.537893 | 2_1:-40312693 | Msa0207680:CDS |
| TCTTGCTAAAGAGCTTCTCC+AGG | 0.541294 | 2_1:-40312805 | Msa0207680:CDS |
| TTAGGTGGTAGCTGTTGAAC+TGG | 0.541370 | 2_1:-40311965 | Msa0207680:three_prime_UTR |
| GTATGCGTTGGTTGTTAGCA+TGG | 0.541573 | 2_1:-40312769 | Msa0207680:CDS |
| GATATCATAGATATCATTGA+GGG | 0.541632 | 2_1:+40313358 | None:intergenic |
| ATAACGTACATCACTACCAC+AGG | 0.545447 | 2_1:+40311827 | None:intergenic |
| GCAGCTGTTCGGACGTTGGA+AGG | 0.548127 | 2_1:+40312448 | None:intergenic |
| TTTCAAGGCATCACCTGCAA+CGG | 0.548387 | 2_1:+40312500 | None:intergenic |
| CCACAAGTGGTGAAAGAAAG+AGG | 0.552043 | 2_1:+40313411 | None:intergenic |
| GAACATTTCTGCATTCATGC+CGG | 0.553989 | 2_1:-40312345 | Msa0207680:CDS |
| GAGAGTCGAGCAAATAATAA+CGG | 0.554120 | 2_1:+40313307 | None:intergenic |
| AGTTACAATCTTGGTGGGAT+GGG | 0.556990 | 2_1:-40312855 | Msa0207680:CDS |
| AGCACCCTTGTTAGTGCGAA+CGG | 0.557174 | 2_1:+40312605 | None:intergenic |
| TGGTGGATCTCATCGATCCA+AGG | 0.558878 | 2_1:+40312066 | None:intergenic |
| TTAACAAGGTAGACTGGCCT+AGG | 0.559143 | 2_1:+40313248 | None:intergenic |
| AATGGTTACCAAGCAAATCA+TGG | 0.560553 | 2_1:+40311787 | None:intergenic |
| TCATCCTAACTCGTATGCGT+TGG | 0.563252 | 2_1:-40312781 | Msa0207680:CDS |
| AACAGCAGCTGTTCGGACGT+TGG | 0.563575 | 2_1:+40312444 | None:intergenic |
| ATTGGCTTACACGGAAGCCA+AGG | 0.568482 | 2_1:-40312202 | Msa0207680:CDS |
| AAAACTTGAAGCTGTCTCCA+TGG | 0.569815 | 2_1:-40312293 | Msa0207680:CDS |
| TTTCCAACAGGGGATCGGAT+AGG | 0.573244 | 2_1:-40312656 | Msa0207680:CDS |
| ATAGTCAAGTTCTGGTCTTG+AGG | 0.573571 | 2_1:-40311883 | Msa0207680:three_prime_UTR |
| AAATTGAAGTATGTGAAGCT+TGG | 0.574482 | 2_1:-40313464 | Msa0207680:CDS |
| GAATTGCAGCCCCTCCCATA+CGG | 0.574490 | 2_1:+40312682 | None:intergenic |
| GAAAACAAACATTACCACGT+TGG | 0.574589 | 2_1:-40312481 | Msa0207680:CDS |
| ACGGTAAAGCCTAAAGACAT+TGG | 0.576657 | 2_1:-40312969 | Msa0207680:CDS |
| GAGAAATTAACAAGGTAGAC+TGG | 0.577191 | 2_1:+40313242 | None:intergenic |
| CATACGAGTTAGGATGAACC+TGG | 0.577273 | 2_1:+40312787 | None:intergenic |
| TTGGTACGAATTGGCTTACA+CGG | 0.578204 | 2_1:-40312211 | Msa0207680:CDS |
| TCACGTTGAATTGGTATCCC+GGG | 0.579569 | 2_1:-40312740 | Msa0207680:CDS |
| TAATTTCTCGTGTTACAAGC+CGG | 0.580512 | 2_1:-40313228 | Msa0207680:CDS |
| TGGTCTTGAGGTTTGGTGTG+CGG | 0.584202 | 2_1:-40311871 | Msa0207680:three_prime_UTR |
| TATCATTACCTAATCACTCA+TGG | 0.585224 | 2_1:-40313440 | Msa0207680:CDS |
| GGAAGGATCCGCGACGACGA+TGG | 0.585504 | 2_1:+40313506 | None:intergenic |
| TCTTTCATTGAAGGATTGGG+AGG | 0.589318 | 2_1:+40313053 | None:intergenic |
| CATTTCTGCATTCATGCCGG+TGG | 0.590314 | 2_1:-40312342 | Msa0207680:CDS |
| ATCCTTCAATGAAAGAAGCT+AGG | 0.592042 | 2_1:-40313046 | Msa0207680:CDS |
| ATGGATCACTCGAGGGCGAG+TGG | 0.595528 | 2_1:-40313173 | Msa0207680:CDS |
| ATGATCATTGCAGAGAGTGA+CGG | 0.597131 | 2_1:+40312909 | None:intergenic |
| TGGAACTGGATGAGTGTAAG+AGG | 0.597719 | 2_1:-40311942 | Msa0207680:three_prime_UTR |
| GAACATCGACCGGAAACTGG+TGG | 0.598498 | 2_1:+40312049 | None:intergenic |
| GTACCAAAGCGAACTGCTCG+AGG | 0.599020 | 2_1:+40312227 | None:intergenic |
| ATAATGAGTTACAATCTTGG+TGG | 0.599058 | 2_1:-40312861 | Msa0207680:CDS |
| TAATGAGTTACAATCTTGGT+GGG | 0.599305 | 2_1:-40312860 | Msa0207680:CDS |
| TTGTATGTATCAACATTAGG+TGG | 0.610070 | 2_1:-40311980 | Msa0207680:three_prime_UTR |
| TGTGTAATGCATAGCTGCAA+TGG | 0.611086 | 2_1:+40311769 | None:intergenic |
| GGTGGATCTCATCGATCCAA+GGG | 0.617008 | 2_1:+40312067 | None:intergenic |
| TCTACCTACTGTCAATCAAG+TGG | 0.619920 | 2_1:+40311701 | None:intergenic |
| AGATATCATAGATATCATTG+AGG | 0.623017 | 2_1:+40313357 | None:intergenic |
| GCTGCAATTAACACCACAAG+TGG | 0.623028 | 2_1:+40313398 | None:intergenic |
| TGCTTAGAACAGCTTCTGGT+AGG | 0.624810 | 2_1:+40313078 | None:intergenic |
| GGATATTTATGGATCACTCG+AGG | 0.626023 | 2_1:-40313181 | Msa0207680:CDS |
| TTTCCCACTTGATTGACAGT+AGG | 0.627605 | 2_1:-40311705 | Msa0207680:three_prime_UTR |
| CCTTGTTAGTGCGAACGGTG+TGG | 0.627883 | 2_1:+40312610 | None:intergenic |
| CGCAGAAATTTATTTCCCTG+TGG | 0.627893 | 2_1:-40311843 | Msa0207680:three_prime_UTR |
| CTACCTACTGTCAATCAAGT+GGG | 0.633156 | 2_1:+40311702 | None:intergenic |
| TCAAGAAAGGAGATAGAACA+TGG | 0.636177 | 2_1:-40312173 | Msa0207680:CDS |
| AAACAAACATTACCACGTTG+GGG | 0.638025 | 2_1:-40312479 | Msa0207680:CDS |
| AGAAGCTAGGAAAGAAGCGG+AGG | 0.638732 | 2_1:-40313033 | Msa0207680:CDS |
| CTTGACGGCTCCATATGCCA+TGG | 0.639071 | 2_1:+40312276 | None:intergenic |
| TCGGACGTTGGAAGGACAAG+TGG | 0.640146 | 2_1:+40312456 | None:intergenic |
| GACGACGATGGCGCTAACAA+GGG | 0.641367 | 2_1:+40313518 | None:intergenic |
| TGCAATTCTACTTTCCAACA+GGG | 0.643744 | 2_1:-40312667 | Msa0207680:CDS |
| GATATTTATGGATCACTCGA+GGG | 0.648472 | 2_1:-40313180 | Msa0207680:CDS |
| TTGGCTTACACGGAAGCCAA+GGG | 0.648617 | 2_1:-40312201 | Msa0207680:CDS |
| CTTACACGGAAGCCAAGGGA+AGG | 0.652154 | 2_1:-40312197 | Msa0207680:CDS |
| GAAAGAAGCTAGGAAAGAAG+CGG | 0.654182 | 2_1:-40313036 | Msa0207680:CDS |
| GGTGGTAGCTGTTGAACTGG+TGG | 0.662600 | 2_1:-40311962 | Msa0207680:three_prime_UTR |
| ATCAATCACTATAAGCTGAG+AGG | 0.664913 | 2_1:-40312888 | Msa0207680:CDS |
| GCAATTCTACTTTCCAACAG+GGG | 0.671034 | 2_1:-40312666 | Msa0207680:CDS |
| TGTTAGCGCCATCGTCGTCG+CGG | 0.673997 | 2_1:-40313514 | Msa0207680:CDS |
| CACACCGTTCGCACTAACAA+GGG | 0.677053 | 2_1:-40312609 | Msa0207680:CDS |
| ACACAAGAAGAAGACGACAA+TGG | 0.692603 | 2_1:-40312558 | Msa0207680:CDS |
| GGCGAGTGGTTTCTTCACGG+AGG | 0.715615 | 2_1:-40313159 | Msa0207680:CDS |
| TGTAACACGAGAAATTAACA+AGG | 0.752828 | 2_1:+40313234 | None:intergenic |
| TAACGTACATCACTACCACA+GGG | 0.758672 | 2_1:+40311828 | None:intergenic |
| AAGGACAAGTGGCCCCAACG+TGG | 0.761089 | 2_1:+40312467 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTGATTTTAAATTAAAAT+TGG | + | chr2_1:40311764-40311783 | None:intergenic | 10.0% |
| !! | CATTTAAAAATAAAAAACAT+AGG | + | chr2_1:40311905-40311924 | None:intergenic | 10.0% |
| !!! | CTATGTTTTTTATTTTTAAA+TGG | - | chr2_1:40311903-40311922 | Msa0207680:three_prime_UTR | 10.0% |
| !! | AAAAAAAACAAATTAAACTT+TGG | - | chr2_1:40312123-40312142 | Msa0207680:CDS | 10.0% |
| !!! | ATGTATTCAAAATTTTAAAC+AGG | - | chr2_1:40312258-40312277 | Msa0207680:CDS | 15.0% |
| !!! | TGTATTCAAAATTTTAAACA+GGG | - | chr2_1:40312259-40312278 | Msa0207680:CDS | 15.0% |
| !! | GATGTATACAAGAAATAAAA+AGG | - | chr2_1:40312044-40312063 | Msa0207680:CDS | 20.0% |
| !! | TAAGATCAACAAAATTGAAA+AGG | + | chr2_1:40312157-40312176 | None:intergenic | 20.0% |
| !! | TACTTTATCAAAAGATCTTA+TGG | - | chr2_1:40313305-40313324 | Msa0207680:CDS | 20.0% |
| !! | TTTAAACTACATCATTTAGA+TGG | + | chr2_1:40313817-40313836 | None:intergenic | 20.0% |
| !!! | TTTTTGTATGTATCAACATT+AGG | - | chr2_1:40313845-40313864 | Msa0207680:intron | 20.0% |
| !!! | GGAAATCACTTTTTTATTAA+TGG | + | chr2_1:40314108-40314127 | None:intergenic | 20.0% |
| ! | AATTTGAATAAGAGAGAGTT+AGG | + | chr2_1:40311882-40311901 | None:intergenic | 25.0% |
| ! | TTTCATATGAAATTCCTATC+TGG | - | chr2_1:40312016-40312035 | Msa0207680:exon | 25.0% |
| ! | TTCATATGAAATTCCTATCT+GGG | - | chr2_1:40312017-40312036 | Msa0207680:exon | 25.0% |
| ! | AAAGGACAAATTAAATAGAC+AGG | - | chr2_1:40312062-40312081 | Msa0207680:CDS | 25.0% |
| ! | AAGGACAAATTAAATAGACA+GGG | - | chr2_1:40312063-40312082 | Msa0207680:CDS | 25.0% |
| !!! | TTCACTGATTTTTTGAAATC+TGG | + | chr2_1:40312346-40312365 | None:intergenic | 25.0% |
| ! | GATATCATAGATATCATTGA+GGG | + | chr2_1:40312473-40312492 | None:intergenic | 25.0% |
| ! | AGATATCATAGATATCATTG+AGG | + | chr2_1:40312474-40312493 | None:intergenic | 25.0% |
| ! | TCAATGATATCTATGATATC+TGG | - | chr2_1:40312473-40312492 | Msa0207680:CDS | 25.0% |
| ! | CAATGATATCTATGATATCT+GGG | - | chr2_1:40312474-40312493 | Msa0207680:CDS | 25.0% |
| ! | AACATAATGAGTTACAATCT+TGG | - | chr2_1:40312964-40312983 | Msa0207680:CDS | 25.0% |
| !!! | TTTGCTTTGAAAGTTAGATT+TGG | - | chr2_1:40313911-40313930 | Msa0207680:intron | 25.0% |
| ! | ACACATTCTTTCTATTGAAA+TGG | - | chr2_1:40314077-40314096 | Msa0207680:intron | 25.0% |
| AAATCGACAATACATGTGAA+TGG | + | chr2_1:40311696-40311715 | None:intergenic | 30.0% | |
| GGAATAAGAGAGAAATGAAA+GGG | + | chr2_1:40311743-40311762 | None:intergenic | 30.0% | |
| TGGAATAAGAGAGAAATGAA+AGG | + | chr2_1:40311744-40311763 | None:intergenic | 30.0% | |
| GGGTTTAATAATCGCATAAA+AGG | - | chr2_1:40312083-40312102 | Msa0207680:CDS | 30.0% | |
| ATATATAGCACAGAGAACTA+TGG | + | chr2_1:40312199-40312218 | None:intergenic | 30.0% | |
| !!! | CTGATTTTTTGAAATCTGGA+AGG | + | chr2_1:40312342-40312361 | None:intergenic | 30.0% |
| AAATTGAAGTATGTGAAGCT+TGG | - | chr2_1:40312364-40312383 | Msa0207680:CDS | 30.0% | |
| TATCATTACCTAATCACTCA+TGG | - | chr2_1:40312388-40312407 | Msa0207680:CDS | 30.0% | |
| AAAAGGTCGATAAAAACACA+AGG | + | chr2_1:40312546-40312565 | None:intergenic | 30.0% | |
| TGTAACACGAGAAATTAACA+AGG | + | chr2_1:40312597-40312616 | None:intergenic | 30.0% | |
| ATGCACTAAGAGGATATTTA+TGG | - | chr2_1:40312636-40312655 | Msa0207680:CDS | 30.0% | |
| ATCAGAATTCCAATGTCTTT+AGG | + | chr2_1:40312871-40312890 | None:intergenic | 30.0% | |
| ATAATGAGTTACAATCTTGG+TGG | - | chr2_1:40312967-40312986 | Msa0207680:CDS | 30.0% | |
| TAATGAGTTACAATCTTGGT+GGG | - | chr2_1:40312968-40312987 | Msa0207680:CDS | 30.0% | |
| AAAACAAACATTACCACGTT+GGG | - | chr2_1:40313348-40313367 | Msa0207680:CDS | 30.0% | |
| ! | GAAGATAAAGCCTTATATTC+CGG | - | chr2_1:40313443-40313462 | Msa0207680:CDS | 30.0% |
| ATTTAGATGGCAGAAATTCT+TGG | + | chr2_1:40313804-40313823 | None:intergenic | 30.0% | |
| TTGTATGTATCAACATTAGG+TGG | - | chr2_1:40313848-40313867 | Msa0207680:intron | 30.0% | |
| ATTCTGATATAGTCAAGTTC+TGG | - | chr2_1:40313937-40313956 | Msa0207680:intron | 30.0% | |
| !! | AATGTAATCCATGATTTGCT+TGG | - | chr2_1:40314033-40314052 | Msa0207680:intron | 30.0% |
| GTATACATCAAAACCCAGAT+AGG | + | chr2_1:40312033-40312052 | None:intergenic | 35.0% | |
| GAGAGTCGAGCAAATAATAA+CGG | + | chr2_1:40312524-40312543 | None:intergenic | 35.0% | |
| AGGACGAGTCATAAAGTAAA+AGG | + | chr2_1:40312563-40312582 | None:intergenic | 35.0% | |
| TTTACTTTATGACTCGTCCT+AGG | - | chr2_1:40312563-40312582 | Msa0207680:CDS | 35.0% | |
| GAGAAATTAACAAGGTAGAC+TGG | + | chr2_1:40312589-40312608 | None:intergenic | 35.0% | |
| TAATTTCTCGTGTTACAAGC+CGG | - | chr2_1:40312600-40312619 | Msa0207680:CDS | 35.0% | |
| GATATTTATGGATCACTCGA+GGG | - | chr2_1:40312648-40312667 | Msa0207680:CDS | 35.0% | |
| GCTTCTTTCATTGAAGGATT+GGG | + | chr2_1:40312781-40312800 | None:intergenic | 35.0% | |
| AGCTTCTTTCATTGAAGGAT+TGG | + | chr2_1:40312782-40312801 | None:intergenic | 35.0% | |
| ATCCTTCAATGAAAGAAGCT+AGG | - | chr2_1:40312782-40312801 | Msa0207680:CDS | 35.0% | |
| TTCCTAGCTTCTTTCATTGA+AGG | + | chr2_1:40312787-40312806 | None:intergenic | 35.0% | |
| ATCAATCACTATAAGCTGAG+AGG | - | chr2_1:40312940-40312959 | Msa0207680:CDS | 35.0% | |
| CAAACAATTCGAAACAAGCT+TGG | + | chr2_1:40313124-40313143 | None:intergenic | 35.0% | |
| TTCGAATTGTTTGTTCCGTA+TGG | - | chr2_1:40313131-40313150 | Msa0207680:CDS | 35.0% | |
| TCGAATTGTTTGTTCCGTAT+GGG | - | chr2_1:40313132-40313151 | Msa0207680:CDS | 35.0% | |
| TGCAATTCTACTTTCCAACA+GGG | - | chr2_1:40313161-40313180 | Msa0207680:CDS | 35.0% | |
| GAGAAGATCCAAATACCAAT+TGG | - | chr2_1:40313194-40313213 | Msa0207680:CDS | 35.0% | |
| !! | CGTGGTAATGTTTGTTTTCA+AGG | + | chr2_1:40313346-40313365 | None:intergenic | 35.0% |
| GAAAACAAACATTACCACGT+TGG | - | chr2_1:40313347-40313366 | Msa0207680:CDS | 35.0% | |
| AAACAAACATTACCACGTTG+GGG | - | chr2_1:40313349-40313368 | Msa0207680:CDS | 35.0% | |
| AGCTTGAAATCCGGAATATA+AGG | + | chr2_1:40313456-40313475 | None:intergenic | 35.0% | |
| ! | TCAAAAGCTAGCTTGAAATC+CGG | + | chr2_1:40313465-40313484 | None:intergenic | 35.0% |
| ! | AGAATGACGCTTTATCGTTT+TGG | - | chr2_1:40313573-40313592 | Msa0207680:intron | 35.0% |
| TCAAGAAAGGAGATAGAACA+TGG | - | chr2_1:40313655-40313674 | Msa0207680:intron | 35.0% | |
| AGAACATGGCAAATAGCATT+TGG | - | chr2_1:40313669-40313688 | Msa0207680:intron | 35.0% | |
| AATGGTTACCAAGCAAATCA+TGG | + | chr2_1:40314044-40314063 | None:intergenic | 35.0% | |
| CAGAGAAGACACAGAAATGT+GGG | + | chr2_1:40311813-40311832 | None:intergenic | 40.0% | |
| GGATATTTATGGATCACTCG+AGG | - | chr2_1:40312647-40312666 | Msa0207680:CDS | 40.0% | |
| ATCTCTCAAGGATCTTTCGT+TGG | + | chr2_1:40312708-40312727 | None:intergenic | 40.0% | |
| TCTTTCATTGAAGGATTGGG+AGG | + | chr2_1:40312778-40312797 | None:intergenic | 40.0% | |
| GAAAGAAGCTAGGAAAGAAG+CGG | - | chr2_1:40312792-40312811 | Msa0207680:CDS | 40.0% | |
| !! | TGAGCTGTTTTCGAAGACAA+CGG | - | chr2_1:40312840-40312859 | Msa0207680:CDS | 40.0% |
| ACGGTAAAGCCTAAAGACAT+TGG | - | chr2_1:40312859-40312878 | Msa0207680:CDS | 40.0% | |
| ATGATCATTGCAGAGAGTGA+CGG | + | chr2_1:40312922-40312941 | None:intergenic | 40.0% | |
| AGTTACAATCTTGGTGGGAT+GGG | - | chr2_1:40312973-40312992 | Msa0207680:CDS | 40.0% | |
| TGGAGAACATCACGTTGAAT+TGG | - | chr2_1:40313079-40313098 | Msa0207680:CDS | 40.0% | |
| ATCACGTTGAATTGGTATCC+CGG | - | chr2_1:40313087-40313106 | Msa0207680:CDS | 40.0% | |
| AATTGTTTGTTCCGTATGGG+AGG | - | chr2_1:40313135-40313154 | Msa0207680:CDS | 40.0% | |
| ATTGTTTGTTCCGTATGGGA+GGG | - | chr2_1:40313136-40313155 | Msa0207680:CDS | 40.0% | |
| CTGCAATTCTACTTTCCAAC+AGG | - | chr2_1:40313160-40313179 | Msa0207680:CDS | 40.0% | |
| GCAATTCTACTTTCCAACAG+GGG | - | chr2_1:40313162-40313181 | Msa0207680:CDS | 40.0% | |
| ACACAAGAAGAAGACGACAA+TGG | - | chr2_1:40313270-40313289 | Msa0207680:CDS | 40.0% | |
| GAACATTTCTGCATTCATGC+CGG | - | chr2_1:40313483-40313502 | Msa0207680:CDS | 40.0% | |
| ! | ATCTAAAACAGCTCTTCCAC+CGG | + | chr2_1:40313505-40313524 | None:intergenic | 40.0% |
| AAAACTTGAAGCTGTCTCCA+TGG | - | chr2_1:40313535-40313554 | Msa0207680:CDS | 40.0% | |
| ! | CGATAAAGCGTCATTCTTGA+CGG | + | chr2_1:40313570-40313589 | None:intergenic | 40.0% |
| ! | TTGGTACGAATTGGCTTACA+CGG | - | chr2_1:40313617-40313636 | Msa0207680:intron | 40.0% |
| ! | TGGCAAATAGCATTTGGTTC+TGG | - | chr2_1:40313675-40313694 | Msa0207680:intron | 40.0% |
| ! | CAAGGGTTCTTCTCTTTTGT+AGG | + | chr2_1:40313747-40313766 | None:intergenic | 40.0% |
| CTACAAAAGAGAAGAACCCT+TGG | - | chr2_1:40313745-40313764 | Msa0207680:intron | 40.0% | |
| GAAATTCTTGGAACATCGAC+CGG | + | chr2_1:40313792-40313811 | None:intergenic | 40.0% | |
| !! | ATAGTCAAGTTCTGGTCTTG+AGG | - | chr2_1:40313945-40313964 | Msa0207680:intron | 40.0% |
| CGCAGAAATTTATTTCCCTG+TGG | - | chr2_1:40313985-40314004 | Msa0207680:intron | 40.0% | |
| TAACGTACATCACTACCACA+GGG | + | chr2_1:40314003-40314022 | None:intergenic | 40.0% | |
| ATAACGTACATCACTACCAC+AGG | + | chr2_1:40314004-40314023 | None:intergenic | 40.0% | |
| TGTGTAATGCATAGCTGCAA+TGG | + | chr2_1:40314062-40314081 | None:intergenic | 40.0% | |
| TTTCCCACTTGATTGACAGT+AGG | - | chr2_1:40314123-40314142 | Msa0207680:intron | 40.0% | |
| CTACCTACTGTCAATCAAGT+GGG | + | chr2_1:40314129-40314148 | None:intergenic | 40.0% | |
| TCTACCTACTGTCAATCAAG+TGG | + | chr2_1:40314130-40314149 | None:intergenic | 40.0% | |
| AGAAGACACAGAAATGTGGG+TGG | + | chr2_1:40311810-40311829 | None:intergenic | 45.0% | |
| GCAGAGAAGACACAGAAATG+TGG | + | chr2_1:40311814-40311833 | None:intergenic | 45.0% | |
| AAAGCCAAAGCCAAAGCCAA+AGG | + | chr2_1:40311839-40311858 | None:intergenic | 45.0% | |
| !!! | GCTTTGGCTTTGGCTTTTCA+AGG | - | chr2_1:40311842-40311861 | Msa0207680:three_prime_UTR | 45.0% |
| GGTACATGCCATGAGTGATT+AGG | + | chr2_1:40312399-40312418 | None:intergenic | 45.0% | |
| CCACAAGTGGTGAAAGAAAG+AGG | + | chr2_1:40312420-40312439 | None:intergenic | 45.0% | |
| CCTCTTTCTTTCACCACTTG+TGG | - | chr2_1:40312417-40312436 | Msa0207680:CDS | 45.0% | |
| GCTGCAATTAACACCACAAG+TGG | + | chr2_1:40312433-40312452 | None:intergenic | 45.0% | |
| !! | TTAACAAGGTAGACTGGCCT+AGG | + | chr2_1:40312583-40312602 | None:intergenic | 45.0% |
| AGTCTCGCAAATGCACTAAG+AGG | - | chr2_1:40312626-40312645 | Msa0207680:CDS | 45.0% | |
| CGAAAGATCCTTGAGAGATC+TGG | - | chr2_1:40312709-40312728 | Msa0207680:CDS | 45.0% | |
| ATCCTTGAGAGATCTGGTCT+TGG | - | chr2_1:40312715-40312734 | Msa0207680:CDS | 45.0% | |
| TGCTTAGAACAGCTTCTGGT+AGG | + | chr2_1:40312753-40312772 | None:intergenic | 45.0% | |
| GGAATGCTTAGAACAGCTTC+TGG | + | chr2_1:40312757-40312776 | None:intergenic | 45.0% | |
| GAGTTACAATCTTGGTGGGA+TGG | - | chr2_1:40312972-40312991 | Msa0207680:CDS | 45.0% | |
| TCTTGCTAAAGAGCTTCTCC+AGG | - | chr2_1:40313023-40313042 | Msa0207680:CDS | 45.0% | |
| CATACGAGTTAGGATGAACC+TGG | + | chr2_1:40313044-40313063 | None:intergenic | 45.0% | |
| TCATCCTAACTCGTATGCGT+TGG | - | chr2_1:40313047-40313066 | Msa0207680:CDS | 45.0% | |
| ACAACCAACGCATACGAGTT+AGG | + | chr2_1:40313054-40313073 | None:intergenic | 45.0% | |
| !! | GTATGCGTTGGTTGTTAGCA+TGG | - | chr2_1:40313059-40313078 | Msa0207680:CDS | 45.0% |
| TCACGTTGAATTGGTATCCC+GGG | - | chr2_1:40313088-40313107 | Msa0207680:CDS | 45.0% | |
| TTGTTTGTTCCGTATGGGAG+GGG | - | chr2_1:40313137-40313156 | Msa0207680:CDS | 45.0% | |
| TCTACTTTCCAACAGGGGAT+CGG | - | chr2_1:40313167-40313186 | Msa0207680:CDS | 45.0% | |
| GGTGTGGACCAATTGGTATT+TGG | + | chr2_1:40313205-40313224 | None:intergenic | 45.0% | |
| GAAGACGACAATGGCAAAGT+TGG | - | chr2_1:40313279-40313298 | Msa0207680:CDS | 45.0% | |
| AAAGATCTTATGGCCGTTGC+AGG | - | chr2_1:40313315-40313334 | Msa0207680:CDS | 45.0% | |
| ! | TTTCAAGGCATCACCTGCAA+CGG | + | chr2_1:40313331-40313350 | None:intergenic | 45.0% |
| CTGTTCTTCGGTACGTTAGT+TGG | - | chr2_1:40313402-40313421 | Msa0207680:CDS | 45.0% | |
| CAGTTCGCTTTGGTACGAAT+TGG | - | chr2_1:40313608-40313627 | Msa0207680:intron | 45.0% | |
| TCCTTTCTTGATCCTTCCCT+TGG | + | chr2_1:40313646-40313665 | None:intergenic | 45.0% | |
| TTAGGTGGTAGCTGTTGAAC+TGG | - | chr2_1:40313863-40313882 | Msa0207680:intron | 45.0% | |
| TGGAACTGGATGAGTGTAAG+AGG | - | chr2_1:40313886-40313905 | Msa0207680:intron | 45.0% | |
| !! | CAAGTTCTGGTCTTGAGGTT+TGG | - | chr2_1:40313950-40313969 | Msa0207680:intron | 45.0% |
| TGTGTCTTCTCTGCTGCCTT+TGG | - | chr2_1:40311820-40311839 | Msa0207680:three_prime_UTR | 50.0% | |
| ! | TTCTCTGCTGCCTTTGGCTT+TGG | - | chr2_1:40311826-40311845 | Msa0207680:three_prime_UTR | 50.0% |
| GTGCATTTGCGAGACTCTTC+CGG | + | chr2_1:40312622-40312641 | None:intergenic | 50.0% | |
| CTCCAAGACCAGATCTCTCA+AGG | + | chr2_1:40312720-40312739 | None:intergenic | 50.0% | |
| AGAAGCTAGGAAAGAAGCGG+AGG | - | chr2_1:40312795-40312814 | Msa0207680:CDS | 50.0% | |
| GAAGCGGAGGCAGTTATGTT+TGG | - | chr2_1:40312808-40312827 | Msa0207680:CDS | 50.0% | |
| ! | ATTGCAGAGAGTGACGGAGT+TGG | + | chr2_1:40312916-40312935 | None:intergenic | 50.0% |
| AAGCTTGGATCGATCGTTCC+CGG | + | chr2_1:40313109-40313128 | None:intergenic | 50.0% | |
| TTTCCAACAGGGGATCGGAT+AGG | - | chr2_1:40313172-40313191 | Msa0207680:CDS | 50.0% | |
| CACACCGTTCGCACTAACAA+GGG | - | chr2_1:40313219-40313238 | Msa0207680:CDS | 50.0% | |
| AGCACCCTTGTTAGTGCGAA+CGG | + | chr2_1:40313226-40313245 | None:intergenic | 50.0% | |
| TCCGAACAGCTGCTGTTCTT+CGG | - | chr2_1:40313390-40313409 | Msa0207680:CDS | 50.0% | |
| ACCGAAGAACAGCAGCTGTT+CGG | + | chr2_1:40313394-40313413 | None:intergenic | 50.0% | |
| CATTTCTGCATTCATGCCGG+TGG | - | chr2_1:40313486-40313505 | Msa0207680:CDS | 50.0% | |
| GAAGCTGTCTCCATGGCATA+TGG | - | chr2_1:40313542-40313561 | Msa0207680:CDS | 50.0% | |
| ! | ATTGGCTTACACGGAAGCCA+AGG | - | chr2_1:40313626-40313645 | Msa0207680:intron | 50.0% |
| TTGGCTTACACGGAAGCCAA+GGG | - | chr2_1:40313627-40313646 | Msa0207680:intron | 50.0% | |
| GCCAAGGGAAGGATCAAGAA+AGG | - | chr2_1:40313642-40313661 | Msa0207680:intron | 50.0% | |
| TCAAGTGCAACAGCGCAGTA+TGG | - | chr2_1:40313700-40313719 | Msa0207680:intron | 50.0% | |
| GGTGGATCTCATCGATCCAA+GGG | + | chr2_1:40313764-40313783 | None:intergenic | 50.0% | |
| ! | TGGTGGATCTCATCGATCCA+AGG | + | chr2_1:40313765-40313784 | None:intergenic | 50.0% |
| CGATGAGATCCACCAGTTTC+CGG | - | chr2_1:40313770-40313789 | Msa0207680:intron | 50.0% | |
| TTGGAACATCGACCGGAAAC+TGG | + | chr2_1:40313785-40313804 | None:intergenic | 50.0% | |
| AGCTGTTGAACTGGTGGAAC+TGG | - | chr2_1:40313872-40313891 | Msa0207680:intron | 50.0% | |
| !! | TGGTCTTGAGGTTTGGTGTG+CGG | - | chr2_1:40313957-40313976 | Msa0207680:intron | 50.0% |
| !! | GCTGCCTTTGGCTTTGGCTT+TGG | - | chr2_1:40311832-40311851 | Msa0207680:three_prime_UTR | 55.0% |
| GACGACGATGGCGCTAACAA+GGG | + | chr2_1:40312313-40312332 | None:intergenic | 55.0% | |
| GAGGGCGAGTGGTTTCTTCA+CGG | - | chr2_1:40312666-40312685 | Msa0207680:CDS | 55.0% | |
| AGCTTGGATCGATCGTTCCC+GGG | + | chr2_1:40313108-40313127 | None:intergenic | 55.0% | |
| GAATTGCAGCCCCTCCCATA+CGG | + | chr2_1:40313149-40313168 | None:intergenic | 55.0% | |
| TCTCCTATCCGATCCCCTGT+TGG | + | chr2_1:40313178-40313197 | None:intergenic | 55.0% | |
| TGCGAACGGTGTGGACCAAT+TGG | + | chr2_1:40313212-40313231 | None:intergenic | 55.0% | |
| CCTTGTTAGTGCGAACGGTG+TGG | + | chr2_1:40313221-40313240 | None:intergenic | 55.0% | |
| CCACACCGTTCGCACTAACA+AGG | - | chr2_1:40313218-40313237 | Msa0207680:CDS | 55.0% | |
| TCGGACGTTGGAAGGACAAG+TGG | + | chr2_1:40313375-40313394 | None:intergenic | 55.0% | |
| AACAGCAGCTGTTCGGACGT+TGG | + | chr2_1:40313387-40313406 | None:intergenic | 55.0% | |
| CTTGACGGCTCCATATGCCA+TGG | + | chr2_1:40313555-40313574 | None:intergenic | 55.0% | |
| ACACCTCGAGCAGTTCGCTT+TGG | - | chr2_1:40313598-40313617 | Msa0207680:intron | 55.0% | |
| GTACCAAAGCGAACTGCTCG+AGG | + | chr2_1:40313604-40313623 | None:intergenic | 55.0% | |
| CTTACACGGAAGCCAAGGGA+AGG | - | chr2_1:40313631-40313650 | Msa0207680:intron | 55.0% | |
| GTGCAACAGCGCAGTATGGA+AGG | - | chr2_1:40313704-40313723 | Msa0207680:intron | 55.0% | |
| GCGCAGTATGGAAGGCTCTA+AGG | - | chr2_1:40313712-40313731 | Msa0207680:intron | 55.0% | |
| GAACATCGACCGGAAACTGG+TGG | + | chr2_1:40313782-40313801 | None:intergenic | 55.0% | |
| GGTGGTAGCTGTTGAACTGG+TGG | - | chr2_1:40313866-40313885 | Msa0207680:intron | 55.0% | |
| CGACGACGATGGCGCTAACA+AGG | + | chr2_1:40312314-40312333 | None:intergenic | 60.0% | |
| TGTTAGCGCCATCGTCGTCG+CGG | - | chr2_1:40312314-40312333 | Msa0207680:CDS | 60.0% | |
| ATGGATCACTCGAGGGCGAG+TGG | - | chr2_1:40312655-40312674 | Msa0207680:CDS | 60.0% | |
| GGCGAGTGGTTTCTTCACGG+AGG | - | chr2_1:40312669-40312688 | Msa0207680:CDS | 60.0% | |
| GTGGGATGGGATGCAGTGCT+GGG | - | chr2_1:40312986-40313005 | Msa0207680:CDS | 60.0% | |
| AAGGACAAGTGGCCCCAACG+TGG | + | chr2_1:40313364-40313383 | None:intergenic | 60.0% | |
| GCAGCTGTTCGGACGTTGGA+AGG | + | chr2_1:40313383-40313402 | None:intergenic | 60.0% | |
| GGAAGGATCCGCGACGACGA+TGG | + | chr2_1:40312325-40312344 | None:intergenic | 65.0% | |
| GGTGGGATGGGATGCAGTGC+TGG | - | chr2_1:40312985-40313004 | Msa0207680:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 40311679 | 40314171 | 40311679 | ID=Msa0207680;Name=Msa0207680 |
| chr2_1 | mRNA | 40311679 | 40314171 | 40311679 | ID=Msa0207680-mRNA-1;Parent=Msa0207680;Name=Msa0207680-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0.5|1|0|0|2|350|521 |
| chr2_1 | exon | 40311679 | 40313570 | 40311679 | ID=Msa0207680-mRNA-1:exon:12501;Parent=Msa0207680-mRNA-1 |
| chr2_1 | exon | 40314148 | 40314171 | 40314148 | ID=Msa0207680-mRNA-1:exon:12500;Parent=Msa0207680-mRNA-1 |
| chr2_1 | CDS | 40314148 | 40314171 | 40314148 | ID=Msa0207680-mRNA-1:cds;Parent=Msa0207680-mRNA-1 |
| chr2_1 | CDS | 40312029 | 40313570 | 40312029 | ID=Msa0207680-mRNA-1:cds;Parent=Msa0207680-mRNA-1 |
| chr2_1 | three_prime_UTR | 40311679 | 40312028 | 40311679 | ID=Msa0207680-mRNA-1:three_prime_utr;Parent=Msa0207680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
