AlfalfaGEDB | Msa0207680

M. sativa cultivar zhongmu-4 / Msa0207680

KEGG: K15397
GO: GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
PFAM: PF08392.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207680	KEH37969.1	99.413	511	3	0	11	521	1	511	0.0	1055

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207680	sp\|O48780\|KCS11_ARATH	82.515	509	88	1	13	521	2	509	0.0	898

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0207680	A0A072V7F7	99.413	511	3	0	11	521	1	511	0.0	1055

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037180	Msa0207680	0.805200	1.497434e-49	-8.615850e-47
Msa0046200	Msa0207680	0.804676	1.927189e-49	-8.615850e-47
Msa0091090	Msa0207680	-0.800760	1.238877e-48	-8.615850e-47
Msa0092220	Msa0207680	0.803079	4.136894e-49	-8.615850e-47
Msa0163960	Msa0207680	-0.811037	8.554134e-51	-8.615850e-47
Msa0183200	Msa0207680	-0.804969	1.673282e-49	-8.615850e-47
Msa0192470	Msa0207680	0.819585	1.074922e-52	-8.615850e-47
Msa0198210	Msa0207680	0.824021	1.011359e-53	-8.615850e-47
Msa0207680	Msa0207690	0.959479	1.732766e-117	-8.615850e-47
Msa0207680	Msa0209360	0.925581	1.510862e-90	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0207680	MtrunA17_Chr4g0063011	89.558	498	52	0	24	521	3	500	939
Msa0207680	MtrunA17_Chr1g0188051	75.692	506	123	0	16	521	7	512	823
Msa0207680	MtrunA17_Chr1g0166191	77.688	493	110	0	29	521	26	518	818
Msa0207680	MtrunA17_Chr2g0306781	98.933	375	4	0	147	521	31	405	776
Msa0207680	MtrunA17_Chr4g0035081	68.635	491	153	1	25	515	13	502	712
Msa0207680	MtrunA17_Chr7g0276251	65.737	502	157	6	27	516	31	529	667
Msa0207680	MtrunA17_Chr1g0209881	63.136	491	180	1	28	518	4	493	637
Msa0207680	MtrunA17_Chr5g0423521	60.081	491	195	1	28	518	4	493	616
Msa0207680	MtrunA17_Chr7g0250661	98.644	295	4	0	227	521	1	295	610
Msa0207680	MtrunA17_Chr6g0480561	60.699	458	174	2	66	517	13	470	576

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0207680	AT2G26640.1	82.515	509	88	1	13	521	2	509	898
Msa0207680	AT1G04220.1	71.881	505	133	5	25	521	18	521	763
Msa0207680	AT5G43760.1	74.037	493	122	3	35	521	34	526	734
Msa0207680	AT1G19440.1	68.712	489	152	1	25	513	25	512	714
Msa0207680	AT2G16280.1	67.894	489	156	1	27	515	23	510	704
Msa0207680	AT1G01120.1	62.828	495	178	3	27	515	32	526	659
Msa0207680	AT1G68530.1	61.837	490	186	1	29	518	6	494	644
Msa0207680	AT4G34510.1	63.312	477	168	3	40	515	15	485	636
Msa0207680	AT1G25450.1	61.224	490	189	1	29	518	1	489	627
Msa0207680	AT2G26250.1	54.962	524	205	4	18	513	28	548	599

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Find 157 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACATTACCACGTT+GGG	0.342115	2_1:-40312480	Msa0207680:CDS
AAAACTTGAAGCTGTCTCCA+TGG	0.569815	2_1:-40312293	Msa0207680:CDS
AAACAAACATTACCACGTTG+GGG	0.638025	2_1:-40312479	Msa0207680:CDS
AAAGATCTTATGGCCGTTGC+AGG	0.375775	2_1:-40312513	Msa0207680:CDS
AAATCGACAATACATGTGAA+TGG	0.518712	2_1:+40314135	None:intergenic
AAATTGAAGTATGTGAAGCT+TGG	0.574482	2_1:-40313464	Msa0207680:CDS
AACAGCAGCTGTTCGGACGT+TGG	0.563575	2_1:+40312444	None:intergenic
AACATAATGAGTTACAATCT+TGG	0.513615	2_1:-40312864	Msa0207680:CDS
AAGCTTGGATCGATCGTTCC+CGG	0.410332	2_1:+40312722	None:intergenic
AAGGACAAGTGGCCCCAACG+TGG	0.761089	2_1:+40312467	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCGACAATACATGTGAA+TGG	+	chr2_1:40311696-40311715	None:intergenic	30.0%
GGAATAAGAGAGAAATGAAA+GGG	+	chr2_1:40311743-40311762	None:intergenic	30.0%
TGGAATAAGAGAGAAATGAA+AGG	+	chr2_1:40311744-40311763	None:intergenic	30.0%
GGGTTTAATAATCGCATAAA+AGG	-	chr2_1:40312083-40312102	Msa0207680:CDS	30.0%
ATATATAGCACAGAGAACTA+TGG	+	chr2_1:40312199-40312218	None:intergenic	30.0%
AAATTGAAGTATGTGAAGCT+TGG	-	chr2_1:40312364-40312383	Msa0207680:CDS	30.0%
TATCATTACCTAATCACTCA+TGG	-	chr2_1:40312388-40312407	Msa0207680:CDS	30.0%
AAAAGGTCGATAAAAACACA+AGG	+	chr2_1:40312546-40312565	None:intergenic	30.0%
TGTAACACGAGAAATTAACA+AGG	+	chr2_1:40312597-40312616	None:intergenic	30.0%
ATGCACTAAGAGGATATTTA+TGG	-	chr2_1:40312636-40312655	Msa0207680:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	40311679	40314171	40311679	ID=Msa0207680;Name=Msa0207680
chr2_1	mRNA	40311679	40314171	40311679	ID=Msa0207680-mRNA-1;Parent=Msa0207680;Name=Msa0207680-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0\|0\|0.5\|1\|0\|0\|2\|350\|521
chr2_1	exon	40311679	40313570	40311679	ID=Msa0207680-mRNA-1:exon:12501;Parent=Msa0207680-mRNA-1
chr2_1	exon	40314148	40314171	40314148	ID=Msa0207680-mRNA-1:exon:12500;Parent=Msa0207680-mRNA-1
chr2_1	CDS	40314148	40314171	40314148	ID=Msa0207680-mRNA-1:cds;Parent=Msa0207680-mRNA-1
chr2_1	CDS	40312029	40313570	40312029	ID=Msa0207680-mRNA-1:cds;Parent=Msa0207680-mRNA-1
chr2_1	three_prime_UTR	40311679	40312028	40311679	ID=Msa0207680-mRNA-1:three_prime_utr;Parent=Msa0207680-mRNA-1

Gene Sequence

>Msa0207680

ATGTGTGAATCAATCCATTCACATGGAAAAATGACAGAATCAAAACAAGATACACCCTTGTTAGCGCCATCGTCGTCGCGGATCCTTCCAGATTTCAAAAAATCAGTGAAATTGAAGTATGTGAAGCTTGGTTATCATTACCTAATCACTCATGGCATGTACCTCTTTCTTTCACCACTTGTGGTGTTAATTGCAGCTCAGTTATCAACTTTCTCCCTCAATGATATCTATGATATCTGGGAAAATCTGCAGTACAATCTCGTATCCGTTATTATTTGCTCGACTCTCCTTGTGTTTTTATCGACCTTTTACTTTATGACTCGTCCTAGGCCAGTCTACCTTGTTAATTTCTCGTGTTACAAGCCGGAAGAGTCTCGCAAATGCACTAAGAGGATATTTATGGATCACTCGAGGGCGAGTGGTTTCTTCACGGAGGAGAATCTTGATTTCCAACGAAAGATCCTTGAGAGATCTGGTCTTGGAGAAAACACTTACCTACCAGAAGCTGTTCTAAGCATTCCTCCCAATCCTTCAATGAAAGAAGCTAGGAAAGAAGCGGAGGCAGTTATGTTTGGTGCTATCGATGAGCTGTTTTCGAAGACAACGGTAAAGCCTAAAGACATTGGAATTCTGATTGTGAATTGTAGTCTTTTCTGTCCAACTCCGTCACTCTCTGCAATGATCATCAATCACTATAAGCTGAGAGGTAACATAATGAGTTACAATCTTGGTGGGATGGGATGCAGTGCTGGGATTATTTCAATTGATCTTGCTAAAGAGCTTCTCCAGGTTCATCCTAACTCGTATGCGTTGGTTGTTAGCATGGAGAACATCACGTTGAATTGGTATCCCGGGAACGATCGATCCAAGCTTGTTTCGAATTGTTTGTTCCGTATGGGAGGGGCTGCAATTCTACTTTCCAACAGGGGATCGGATAGGAGAAGATCCAAATACCAATTGGTCCACACCGTTCGCACTAACAAGGGTGCTGATGACAAGTGCTTCAGCTGCGTTACACAAGAAGAAGACGACAATGGCAAAGTTGGTGTTACTTTATCAAAAGATCTTATGGCCGTTGCAGGTGATGCCTTGAAAACAAACATTACCACGTTGGGGCCACTTGTCCTTCCAACGTCCGAACAGCTGCTGTTCTTCGGTACGTTAGTTGGAAAGAAACTCTTCAAGATGAAGATAAAGCCTTATATTCCGGATTTCAAGCTAGCTTTTGAACATTTCTGCATTCATGCCGGTGGAAGAGCTGTTTTAGATGAGCTAGAGAAAAACTTGAAGCTGTCTCCATGGCATATGGAGCCGTCAAGAATGACGCTTTATCGTTTTGGAAACACCTCGAGCAGTTCGCTTTGGTACGAATTGGCTTACACGGAAGCCAAGGGAAGGATCAAGAAAGGAGATAGAACATGGCAAATAGCATTTGGTTCTGGATTCAAGTGCAACAGCGCAGTATGGAAGGCTCTAAGGACAATCAATCCTACAAAAGAGAAGAACCCTTGGATCGATGAGATCCACCAGTTTCCGGTCGATGTTCCAAGAATTTCTGCCATCTAA

Protein sequence

>Msa0207680

MCESIHSHGKMTESKQDTPLLAPSSSRILPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVVLIAAQLSTFSLNDIYDIWENLQYNLVSVIICSTLLVFLSTFYFMTRPRPVYLVNFSCYKPEESRKCTKRIFMDHSRASGFFTEENLDFQRKILERSGLGENTYLPEAVLSIPPNPSMKEARKEAEAVMFGAIDELFSKTTVKPKDIGILIVNCSLFCPTPSLSAMIINHYKLRGNIMSYNLGGMGCSAGIISIDLAKELLQVHPNSYALVVSMENITLNWYPGNDRSKLVSNCLFRMGGAAILLSNRGSDRRRSKYQLVHTVRTNKGADDKCFSCVTQEEDDNGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFGTLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLKLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPTKEKNPWIDEIHQFPVDVPRISAI*