Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607120 | KEH30610.1 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 1.79e-179 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607120 | sp|Q9SU40|SKU5_ARATH | 56.175 | 251 | 96 | 3 | 9 | 246 | 5 | 254 | 6.37e-86 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047000 | Msa0607120 | 0.809067 | 2.272333e-50 | -8.615850e-47 |
| Msa0607120 | Msa0647320 | 0.859105 | 5.205287e-63 | -8.615850e-47 |
| Msa0607120 | Msa0690190 | 0.919675 | 3.345589e-87 | -8.615850e-47 |
| Msa0607120 | Msa0690930 | 0.825182 | 5.387590e-54 | -8.615850e-47 |
| Msa0607120 | Msa0758400 | 0.809940 | 1.475885e-50 | -8.615850e-47 |
| Msa0607120 | Msa0930210 | 0.802802 | 4.719728e-49 | -8.615850e-47 |
| Msa0607120 | Msa1068710 | 0.803139 | 4.020833e-49 | -8.615850e-47 |
| Msa0607120 | Msa1078550 | 0.801002 | 1.105783e-48 | -8.615850e-47 |
| Msa0607120 | Msa1088150 | 0.822297 | 2.554686e-53 | -8.615850e-47 |
| Msa0607120 | Msa1111060 | 0.810076 | 1.379613e-50 | -8.615850e-47 |
| Msa0607120 | Msa1453050 | 0.870088 | 1.900677e-66 | -8.615850e-47 |
| Msa0131190 | Msa0607120 | 0.806463 | 8.125991e-50 | -8.615850e-47 |
| Msa0198210 | Msa0607120 | 0.816057 | 6.729578e-52 | -8.615850e-47 |
| Msa0373050 | Msa0607120 | 0.810682 | 1.020800e-50 | -8.615850e-47 |
| Msa0381100 | Msa0607120 | 0.803359 | 3.620551e-49 | -8.615850e-47 |
| Msa0382460 | Msa0607120 | 0.813522 | 2.452598e-51 | -8.615850e-47 |
| Msa0383660 | Msa0607120 | 0.803691 | 3.089056e-49 | -8.615850e-47 |
| Msa0447440 | Msa0607120 | 0.813288 | 2.761303e-51 | -8.615850e-47 |
| Msa0353500 | Msa0607120 | 0.831186 | 1.925613e-55 | -8.615850e-47 |
| Msa0494950 | Msa0607120 | 0.818891 | 1.547204e-52 | -8.615850e-47 |
| Msa0521890 | Msa0607120 | 0.810474 | 1.132152e-50 | -8.615850e-47 |
| Msa0553090 | Msa0607120 | 0.902187 | 1.252107e-78 | -8.615850e-47 |
| Msa0575380 | Msa0607120 | 0.839638 | 1.406092e-57 | -8.615850e-47 |
| Msa0576180 | Msa0607120 | 0.835942 | 1.250598e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607120 | MtrunA17_Chr4g0038671 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 0.0 | 511 |
| Msa0607120 | MtrunA17_Chr3g0143671 | 76.793 | 237 | 54 | 1 | 11 | 246 | 11 | 247 | 6.46e-133 | 385 |
| Msa0607120 | MtrunA17_Chr1g0157341 | 78.761 | 226 | 47 | 1 | 22 | 246 | 21 | 246 | 3.32e-131 | 381 |
| Msa0607120 | MtrunA17_Chr4g0024861 | 72.197 | 223 | 61 | 1 | 25 | 246 | 22 | 244 | 2.36e-116 | 343 |
| Msa0607120 | MtrunA17_Chr4g0075071 | 69.355 | 248 | 74 | 2 | 1 | 246 | 1 | 248 | 5.73e-113 | 334 |
| Msa0607120 | MtrunA17_Chr2g0322441 | 73.543 | 223 | 58 | 1 | 25 | 246 | 25 | 247 | 1.25e-111 | 331 |
| Msa0607120 | MtrunA17_Chr8g0374261 | 56.957 | 230 | 99 | 0 | 17 | 246 | 16 | 245 | 1.58e-97 | 295 |
| Msa0607120 | MtrunA17_Chr8g0374271 | 59.009 | 222 | 90 | 1 | 25 | 246 | 26 | 246 | 1.47e-94 | 287 |
| Msa0607120 | MtrunA17_Chr5g0402831 | 60.000 | 225 | 89 | 1 | 22 | 246 | 23 | 246 | 2.59e-90 | 276 |
| Msa0607120 | MtrunA17_Chr4g0043251 | 55.823 | 249 | 104 | 2 | 4 | 246 | 1 | 249 | 1.96e-85 | 264 |
| Msa0607120 | MtrunA17_Chr4g0043261 | 53.556 | 239 | 108 | 2 | 10 | 246 | 6 | 243 | 4.83e-84 | 260 |
| Msa0607120 | MtrunA17_Chr3g0121151 | 54.000 | 250 | 107 | 3 | 5 | 246 | 39 | 288 | 4.19e-83 | 259 |
| Msa0607120 | MtrunA17_Chr3g0121161 | 54.000 | 250 | 107 | 3 | 5 | 246 | 39 | 288 | 4.66e-83 | 259 |
| Msa0607120 | MtrunA17_Chr3g0121171 | 54.000 | 250 | 107 | 3 | 5 | 246 | 574 | 823 | 5.87e-79 | 258 |
| Msa0607120 | MtrunA17_Chr3g0121171 | 54.000 | 250 | 107 | 3 | 5 | 246 | 1149 | 1398 | 5.87e-79 | 258 |
| Msa0607120 | MtrunA17_Chr3g0121171 | 56.087 | 230 | 95 | 2 | 23 | 246 | 19 | 248 | 3.40e-77 | 253 |
| Msa0607120 | MtrunA17_Chr3g0121171 | 50.617 | 243 | 103 | 4 | 12 | 246 | 1731 | 1964 | 3.54e-68 | 228 |
| Msa0607120 | MtrunA17_Chr7g0234061 | 54.077 | 233 | 94 | 2 | 27 | 246 | 26 | 258 | 2.72e-73 | 234 |
| Msa0607120 | MtrunA17_Chr4g0056511 | 53.200 | 250 | 101 | 3 | 13 | 246 | 7 | 256 | 4.65e-72 | 230 |
| Msa0607120 | MtrunA17_Chr3g0079321 | 47.471 | 257 | 113 | 3 | 11 | 245 | 1 | 257 | 8.88e-71 | 227 |
| Msa0607120 | MtrunA17_Chr4g0024641 | 68.153 | 157 | 48 | 2 | 91 | 246 | 12 | 167 | 4.23e-67 | 223 |
| Msa0607120 | MtrunA17_Chr1g0197311 | 39.485 | 233 | 100 | 5 | 19 | 211 | 12 | 243 | 2.16e-46 | 154 |
| Msa0607120 | MtrunA17_Chr4g0075781 | 59.483 | 116 | 44 | 2 | 134 | 246 | 1 | 116 | 2.74e-41 | 139 |
| Msa0607120 | MtrunA17_Chr5g0404361 | 32.046 | 259 | 158 | 5 | 1 | 245 | 51 | 305 | 7.93e-36 | 134 |
| Msa0607120 | MtrunA17_Chr4g0005921 | 31.967 | 244 | 153 | 6 | 13 | 245 | 8 | 249 | 4.06e-35 | 131 |
| Msa0607120 | MtrunA17_Chr5g0404341 | 32.143 | 252 | 148 | 7 | 10 | 245 | 15 | 259 | 1.49e-34 | 130 |
| Msa0607120 | MtrunA17_Chr7g0237441 | 28.862 | 246 | 161 | 5 | 10 | 244 | 15 | 257 | 2.29e-32 | 124 |
| Msa0607120 | MtrunA17_Chr5g0436461 | 30.833 | 240 | 149 | 5 | 21 | 244 | 9 | 247 | 2.64e-32 | 123 |
| Msa0607120 | MtrunA17_Chr5g0429511 | 30.769 | 247 | 157 | 5 | 10 | 245 | 9 | 252 | 9.95e-32 | 122 |
| Msa0607120 | MtrunA17_Chr4g0024651 | 80.645 | 62 | 12 | 0 | 25 | 86 | 22 | 83 | 1.33e-31 | 112 |
| Msa0607120 | MtrunA17_Chr3g0104061 | 31.858 | 226 | 142 | 4 | 30 | 244 | 26 | 250 | 6.32e-31 | 119 |
| Msa0607120 | MtrunA17_Chr7g0237491 | 30.120 | 249 | 160 | 6 | 7 | 244 | 12 | 257 | 8.73e-30 | 116 |
| Msa0607120 | MtrunA17_Chr7g0238351 | 29.150 | 247 | 161 | 6 | 10 | 245 | 15 | 258 | 4.89e-28 | 111 |
| Msa0607120 | MtrunA17_Chr5g0431581 | 31.579 | 247 | 154 | 7 | 10 | 245 | 8 | 250 | 1.55e-27 | 110 |
| Msa0607120 | MtrunA17_Chr8g0346581 | 28.326 | 233 | 155 | 4 | 24 | 245 | 28 | 259 | 4.23e-27 | 108 |
| Msa0607120 | MtrunA17_Chr4g0031901 | 28.889 | 225 | 149 | 4 | 30 | 244 | 44 | 267 | 1.03e-25 | 105 |
| Msa0607120 | MtrunA17_Chr7g0238941 | 27.313 | 227 | 153 | 4 | 30 | 245 | 34 | 259 | 1.54e-24 | 101 |
| Msa0607120 | MtrunA17_Chr8g0382691 | 30.242 | 248 | 136 | 9 | 25 | 242 | 29 | 269 | 6.32e-24 | 100 |
| Msa0607120 | MtrunA17_Chr7g0240971 | 29.845 | 258 | 159 | 6 | 1 | 245 | 1 | 249 | 2.09e-23 | 98.6 |
| Msa0607120 | MtrunA17_Chr3g0114211 | 25.882 | 255 | 177 | 5 | 1 | 244 | 4 | 257 | 1.58e-22 | 95.9 |
| Msa0607120 | MtrunA17_Chr7g0238981 | 28.319 | 226 | 150 | 4 | 30 | 244 | 47 | 271 | 4.01e-22 | 94.7 |
| Msa0607120 | MtrunA17_Chr7g0240991 | 29.839 | 248 | 157 | 7 | 9 | 245 | 7 | 248 | 4.63e-22 | 94.7 |
| Msa0607120 | MtrunA17_Chr5g0437681 | 26.446 | 242 | 164 | 6 | 16 | 244 | 8 | 248 | 1.04e-21 | 93.6 |
| Msa0607120 | MtrunA17_Chr4g0008521 | 30.516 | 213 | 136 | 4 | 44 | 245 | 40 | 251 | 1.85e-21 | 92.8 |
| Msa0607120 | MtrunA17_Chr3g0133871 | 27.941 | 204 | 139 | 4 | 19 | 215 | 16 | 218 | 9.72e-20 | 84.7 |
| Msa0607120 | MtrunA17_Chr3g0118341 | 31.250 | 176 | 113 | 7 | 8 | 177 | 1 | 174 | 2.30e-18 | 80.9 |
| Msa0607120 | MtrunA17_Chr2g0278811 | 23.507 | 268 | 165 | 5 | 14 | 242 | 22 | 288 | 1.23e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607120 | AT4G38420.2 | 77.542 | 236 | 51 | 1 | 13 | 246 | 13 | 248 | 2.43e-134 | 386 |
| Msa0607120 | AT4G38420.3 | 77.542 | 236 | 51 | 1 | 13 | 246 | 13 | 248 | 2.63e-134 | 388 |
| Msa0607120 | AT4G38420.1 | 77.542 | 236 | 51 | 1 | 13 | 246 | 13 | 248 | 1.75e-133 | 387 |
| Msa0607120 | AT1G76160.1 | 76.596 | 235 | 55 | 0 | 12 | 246 | 10 | 244 | 4.93e-133 | 386 |
| Msa0607120 | AT1G41830.1 | 76.695 | 236 | 54 | 1 | 12 | 246 | 10 | 245 | 4.83e-132 | 383 |
| Msa0607120 | AT1G21850.1 | 69.919 | 246 | 71 | 1 | 1 | 246 | 3 | 245 | 6.63e-124 | 363 |
| Msa0607120 | AT1G21860.1 | 68.293 | 246 | 75 | 1 | 1 | 246 | 3 | 245 | 1.54e-121 | 357 |
| Msa0607120 | AT4G22010.1 | 72.000 | 225 | 62 | 1 | 23 | 246 | 19 | 243 | 3.88e-116 | 343 |
| Msa0607120 | AT4G28090.1 | 64.557 | 237 | 80 | 3 | 13 | 246 | 12 | 247 | 4.49e-107 | 320 |
| Msa0607120 | AT5G66920.1 | 62.222 | 225 | 84 | 1 | 22 | 246 | 29 | 252 | 3.11e-101 | 305 |
| Msa0607120 | AT4G37160.2 | 54.032 | 248 | 109 | 2 | 4 | 246 | 1 | 248 | 1.89e-88 | 269 |
| Msa0607120 | AT4G37160.1 | 54.032 | 248 | 109 | 2 | 4 | 246 | 1 | 248 | 2.26e-87 | 269 |
| Msa0607120 | AT4G12420.1 | 56.175 | 251 | 96 | 3 | 9 | 246 | 5 | 254 | 6.47e-87 | 269 |
| Msa0607120 | AT4G12420.2 | 56.175 | 251 | 96 | 3 | 9 | 246 | 5 | 254 | 6.47e-87 | 269 |
| Msa0607120 | AT1G55570.1 | 55.466 | 247 | 99 | 2 | 11 | 246 | 5 | 251 | 8.19e-87 | 268 |
| Msa0607120 | AT3G13400.2 | 56.379 | 243 | 100 | 1 | 10 | 246 | 7 | 249 | 1.32e-86 | 267 |
| Msa0607120 | AT3G13400.1 | 56.379 | 243 | 100 | 1 | 10 | 246 | 7 | 249 | 1.32e-86 | 267 |
| Msa0607120 | AT2G23630.2 | 55.365 | 233 | 103 | 1 | 15 | 246 | 19 | 251 | 8.44e-86 | 265 |
| Msa0607120 | AT2G23630.1 | 55.365 | 233 | 103 | 1 | 15 | 246 | 14 | 246 | 1.12e-85 | 265 |
| Msa0607120 | AT1G55560.1 | 54.251 | 247 | 107 | 1 | 6 | 246 | 2 | 248 | 2.01e-85 | 264 |
| Msa0607120 | AT1G75790.1 | 53.556 | 239 | 109 | 2 | 8 | 245 | 6 | 243 | 1.78e-84 | 261 |
| Msa0607120 | AT5G48450.2 | 51.779 | 253 | 114 | 3 | 1 | 246 | 1 | 252 | 1.12e-83 | 261 |
| Msa0607120 | AT5G48450.1 | 51.779 | 253 | 114 | 3 | 1 | 246 | 1 | 252 | 1.77e-83 | 261 |
| Msa0607120 | AT3G13390.1 | 58.590 | 227 | 88 | 2 | 26 | 246 | 24 | 250 | 1.54e-81 | 254 |
| Msa0607120 | AT5G51480.1 | 51.883 | 239 | 103 | 1 | 19 | 245 | 17 | 255 | 8.95e-80 | 251 |
| Msa0607120 | AT4G25240.2 | 51.953 | 256 | 109 | 2 | 4 | 245 | 1 | 256 | 5.72e-77 | 243 |
| Msa0607120 | AT4G25240.1 | 51.953 | 256 | 109 | 2 | 4 | 245 | 1 | 256 | 5.72e-77 | 243 |
| Msa0607120 | AT2G38080.1 | 31.837 | 245 | 155 | 5 | 10 | 244 | 8 | 250 | 2.04e-37 | 138 |
| Msa0607120 | AT5G03260.1 | 32.377 | 244 | 150 | 6 | 13 | 245 | 12 | 251 | 3.37e-32 | 123 |
| Msa0607120 | AT5G58910.2 | 31.278 | 227 | 144 | 4 | 30 | 245 | 30 | 255 | 3.51e-32 | 123 |
| Msa0607120 | AT5G58910.3 | 33.495 | 206 | 125 | 4 | 51 | 245 | 50 | 254 | 1.06e-31 | 122 |
| Msa0607120 | AT5G01190.1 | 31.325 | 249 | 157 | 6 | 7 | 244 | 4 | 249 | 1.85e-31 | 121 |
| Msa0607120 | AT5G01190.2 | 34.634 | 205 | 122 | 5 | 51 | 244 | 32 | 235 | 2.86e-29 | 115 |
| Msa0607120 | AT2G30210.1 | 30.196 | 255 | 160 | 6 | 6 | 245 | 2 | 253 | 8.04e-29 | 114 |
| Msa0607120 | AT2G46570.1 | 30.396 | 227 | 146 | 5 | 30 | 245 | 32 | 257 | 7.65e-28 | 111 |
| Msa0607120 | AT5G58910.1 | 32.524 | 206 | 120 | 5 | 51 | 245 | 14 | 211 | 2.33e-27 | 110 |
| Msa0607120 | AT5G60020.1 | 28.226 | 248 | 166 | 5 | 8 | 244 | 3 | 249 | 7.88e-27 | 108 |
| Msa0607120 | AT5G60020.2 | 28.226 | 248 | 166 | 5 | 8 | 244 | 3 | 249 | 8.00e-27 | 108 |
| Msa0607120 | AT4G39830.1 | 30.075 | 266 | 147 | 9 | 11 | 242 | 16 | 276 | 1.01e-25 | 105 |
| Msa0607120 | AT2G29130.1 | 28.455 | 246 | 164 | 4 | 10 | 244 | 10 | 254 | 2.91e-25 | 104 |
| Msa0607120 | AT5G60020.3 | 30.244 | 205 | 131 | 5 | 51 | 244 | 14 | 217 | 3.21e-25 | 103 |
| Msa0607120 | AT5G48100.1 | 31.553 | 206 | 123 | 5 | 51 | 242 | 43 | 244 | 3.37e-25 | 103 |
| Msa0607120 | AT5G01050.1 | 31.020 | 245 | 148 | 6 | 11 | 245 | 14 | 247 | 4.93e-24 | 100 |
| Msa0607120 | AT5G05390.1 | 27.572 | 243 | 164 | 5 | 13 | 244 | 10 | 251 | 8.12e-24 | 100 |
| Msa0607120 | AT5G01040.1 | 31.429 | 245 | 147 | 5 | 11 | 245 | 14 | 247 | 8.33e-24 | 100 |
| Msa0607120 | AT5G21100.1 | 28.689 | 244 | 138 | 7 | 34 | 246 | 28 | 266 | 1.56e-23 | 99.4 |
| Msa0607120 | AT1G18140.1 | 27.948 | 229 | 149 | 6 | 30 | 245 | 29 | 254 | 9.84e-23 | 97.1 |
| Msa0607120 | AT5G07130.1 | 27.888 | 251 | 165 | 6 | 9 | 245 | 3 | 251 | 1.06e-22 | 96.7 |
| Msa0607120 | AT5G21105.1 | 27.381 | 252 | 150 | 7 | 24 | 244 | 32 | 281 | 1.02e-21 | 94.0 |
| Msa0607120 | AT5G21105.3 | 27.381 | 252 | 150 | 7 | 24 | 244 | 32 | 281 | 1.04e-21 | 94.0 |
| Msa0607120 | AT3G09220.1 | 27.126 | 247 | 163 | 5 | 11 | 246 | 12 | 252 | 1.77e-21 | 93.2 |
| Msa0607120 | AT5G09360.1 | 29.412 | 204 | 131 | 5 | 51 | 242 | 57 | 259 | 1.93e-21 | 93.2 |
| Msa0607120 | AT2G40370.1 | 25.591 | 254 | 175 | 5 | 4 | 244 | 1 | 253 | 3.86e-21 | 92.4 |
| Msa0607120 | AT2G46570.2 | 31.765 | 170 | 104 | 5 | 87 | 245 | 4 | 172 | 2.22e-18 | 84.0 |
| Msa0607120 | AT5G07130.2 | 28.144 | 167 | 104 | 6 | 93 | 245 | 2 | 166 | 3.46e-11 | 63.2 |
| Msa0607120 | AT5G07130.3 | 28.144 | 167 | 104 | 6 | 93 | 245 | 2 | 166 | 3.46e-11 | 63.2 |
Find 66 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAAGCTGCTGGTGGTTT+TGG | 0.124056 | 4_2:-53817094 | Msa0607120:CDS |
| TCTTACCAAGATGGAGTTTA+TGG | 0.139950 | 4_2:-53817214 | Msa0607120:CDS |
| TTAGTAACAGAGTAGATTTC+TGG | 0.213058 | 4_2:+53818377 | None:intergenic |
| TCAAGGCCACATCATGAAAT+TGG | 0.262122 | 4_2:-53816512 | Msa0607120:CDS |
| TGGAGTTGGACTATTACTTA+TGG | 0.267372 | 4_2:+53818705 | None:intergenic |
| CTTATCAATGGTCAATTTCC+TGG | 0.281749 | 4_2:-53818401 | Msa0607120:CDS |
| GTGTAATCATTAGCTGGTTC+AGG | 0.306591 | 4_2:+53817028 | None:intergenic |
| CTTCAAGTCAAGGATCAAAT+TGG | 0.321992 | 4_2:-53817148 | Msa0607120:CDS |
| CTGAGGAAAGTTCTAGATTT+CGG | 0.335594 | 4_2:-53816767 | Msa0607120:CDS |
| TACAACATACACTCAACTTT+AGG | 0.338339 | 4_2:-53816537 | Msa0607120:CDS |
| GTCCAGTCAAAGAATCTATA+AGG | 0.347743 | 4_2:+53818567 | None:intergenic |
| GGAGTTGGACTATTACTTAT+GGG | 0.371910 | 4_2:+53818706 | None:intergenic |
| AAACAGCAAAAGAAATGGTT+TGG | 0.392793 | 4_2:+53818685 | None:intergenic |
| ACACATTTCTCATTGGTGAT+TGG | 0.410219 | 4_2:-53817009 | Msa0607120:CDS |
| AATGATTACACATTTCTCAT+TGG | 0.414702 | 4_2:-53817016 | Msa0607120:CDS |
| CATGATAAAAGAAATGGTTC+TGG | 0.417085 | 4_2:+53818320 | None:intergenic |
| TGTTACCATGATAAAAGAAA+TGG | 0.418474 | 4_2:+53818314 | None:intergenic |
| ATCCTTATAGATTCTTTGAC+TGG | 0.423381 | 4_2:-53818569 | Msa0607120:CDS |
| ACACTCAACTTTAGGATTCA+AGG | 0.438553 | 4_2:-53816529 | Msa0607120:CDS |
| TTGCAGGGCATTCTTATCAA+TGG | 0.439744 | 4_2:-53818413 | Msa0607120:intron |
| CTTATCAATGGTCATGCAAA+TGG | 0.445715 | 4_2:-53816716 | Msa0607120:CDS |
| ATGAAATTGGTTGAAGTTGA+GGG | 0.453531 | 4_2:-53816499 | Msa0607120:CDS |
| ACCACATGTCCCATCCCTCC+TGG | 0.460131 | 4_2:-53817190 | Msa0607120:CDS |
| GCTGGTTCAGGGAAAGGAAC+AGG | 0.467542 | 4_2:+53817040 | None:intergenic |
| CAAAAGAAATGGTTTGGAGT+TGG | 0.468486 | 4_2:+53818691 | None:intergenic |
| ATAAGAACAGCTTGAGGGAG+TGG | 0.475907 | 4_2:+53816734 | None:intergenic |
| GATCCATCAAAATCCTTAGC+AGG | 0.481909 | 4_2:-53817072 | Msa0607120:CDS |
| CCTCAAGCTGTTCTTATCAA+TGG | 0.493597 | 4_2:-53816728 | Msa0607120:CDS |
| TCCACTCGGAGTTAAACAAC+AGG | 0.494721 | 4_2:-53818523 | Msa0607120:intron |
| TTTGACTGGACTATTACTTA+CGG | 0.497937 | 4_2:-53818555 | Msa0607120:CDS |
| GGGAAAGGAACAGGAATCCT+TGG | 0.500790 | 4_2:+53817049 | None:intergenic |
| CATGAAATTGGTTGAAGTTG+AGG | 0.506111 | 4_2:-53816500 | Msa0607120:CDS |
| TTATCAATGGTCAATTTCCT+GGG | 0.508751 | 4_2:-53818400 | Msa0607120:CDS |
| AGAAATGTGTAATCATTAGC+TGG | 0.513858 | 4_2:+53817022 | None:intergenic |
| CAGGAATCCTTGGCCTGCTA+AGG | 0.516087 | 4_2:+53817059 | None:intergenic |
| TCATTAGCTGGTTCAGGGAA+AGG | 0.520994 | 4_2:+53817034 | None:intergenic |
| TGTAATCATTAGCTGGTTCA+GGG | 0.522087 | 4_2:+53817029 | None:intergenic |
| AAGTTCTTCCCAGGAGGGAT+GGG | 0.522984 | 4_2:+53817181 | None:intergenic |
| GAAGTTCTTCCCAGGAGGGA+TGG | 0.529815 | 4_2:+53817180 | None:intergenic |
| AACAAAGCAAGTAGTTGCAT+TGG | 0.537596 | 4_2:+53818630 | None:intergenic |
| AGGAGAAATTCTTACCAAGA+TGG | 0.542021 | 4_2:-53817223 | Msa0607120:CDS |
| CCCAGGAGGGATGGGACATG+TGG | 0.546425 | 4_2:+53817189 | None:intergenic |
| TGGTTCCATAAACTCCATCT+TGG | 0.552233 | 4_2:+53817209 | None:intergenic |
| CATTGATAAGAACAGCTTGA+GGG | 0.561031 | 4_2:+53816729 | None:intergenic |
| AGACTTAGAATATCAAATGT+TGG | 0.562643 | 4_2:-53816562 | Msa0607120:CDS |
| TACGGTGATATTTATCCACT+CGG | 0.565135 | 4_2:-53818537 | Msa0607120:CDS |
| CTTCAACCAATTTCATGATG+TGG | 0.567105 | 4_2:+53816506 | None:intergenic |
| GAGTTGGACTATTACTTATG+GGG | 0.570894 | 4_2:+53818707 | None:intergenic |
| ATGTTGAATGAAATAAATAG+AGG | 0.571312 | 4_2:+53818741 | None:intergenic |
| CACATATACACTTCAAGTCA+AGG | 0.576744 | 4_2:-53817158 | Msa0607120:CDS |
| ACAGAGTAGATTTCTGGCCC+AGG | 0.577570 | 4_2:+53818383 | None:intergenic |
| TATATGAATTTCAGAAGCTG+AGG | 0.579611 | 4_2:-53816784 | Msa0607120:intron |
| CCACATGTCCCATCCCTCCT+GGG | 0.583499 | 4_2:-53817189 | Msa0607120:CDS |
| ACCTGTTGTTTAACTCCGAG+TGG | 0.583836 | 4_2:+53818522 | None:intergenic |
| TCAAAATCCTTAGCAGGCCA+AGG | 0.584089 | 4_2:-53817066 | Msa0607120:CDS |
| ACATCATTCACTGTTGAACA+AGG | 0.586268 | 4_2:-53816692 | Msa0607120:intron |
| GCTTTGTGAAAAGCAAGAGA+TGG | 0.595885 | 4_2:+53817109 | None:intergenic |
| GTATATGTGAAGTTCTTCCC+AGG | 0.597699 | 4_2:+53817172 | None:intergenic |
| CCATTGATAAGAACAGCTTG+AGG | 0.610225 | 4_2:+53816728 | None:intergenic |
| AAGGAAAATGTAAAGAGAGG+AGG | 0.617695 | 4_2:+53818778 | None:intergenic |
| ACAGGAATGGTGTTCAACAA+AGG | 0.618737 | 4_2:-53817243 | Msa0607120:intron |
| AACAAGGAAAATGTAAAGAG+AGG | 0.626517 | 4_2:+53818775 | None:intergenic |
| ATGTGAAGTTCTTCCCAGGA+GGG | 0.636920 | 4_2:+53817176 | None:intergenic |
| TTGGTACAAGATTGATCACA+CGG | 0.678759 | 4_2:-53816990 | Msa0607120:intron |
| TATGTGAAGTTCTTCCCAGG+AGG | 0.683481 | 4_2:+53817175 | None:intergenic |
| AGAGGAAGAGAAACCCAACA+AGG | 0.684746 | 4_2:+53818759 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTACTTTTTATTTAAT+TGG | - | chr4_2:53817318-53817337 | Msa0607120:intron | 10.0% |
| !!! | AGCTAAAAAATATTTTAAAA+TGG | - | chr4_2:53817446-53817465 | Msa0607120:intron | 10.0% |
| !!! | GCTAAAAAATATTTTAAAAT+GGG | - | chr4_2:53817447-53817466 | Msa0607120:intron | 10.0% |
| !!! | ATAAGTAATTTTATTTTTCT+CGG | + | chr4_2:53818328-53818347 | None:intergenic | 10.0% |
| !!! | GTATTTACTTTTTATTTAAT+TGG | - | chr4_2:53817318-53817337 | Msa0607120:intron | 10.0% |
| !!! | AGCTAAAAAATATTTTAAAA+TGG | - | chr4_2:53817446-53817465 | Msa0607120:intron | 10.0% |
| !!! | GCTAAAAAATATTTTAAAAT+GGG | - | chr4_2:53817447-53817466 | Msa0607120:intron | 10.0% |
| !!! | ATAAGTAATTTTATTTTTCT+CGG | + | chr4_2:53818328-53818347 | None:intergenic | 10.0% |
| !!! | AAGTTTTTATGAATTTCTAA+AGG | + | chr4_2:53817123-53817142 | None:intergenic | 15.0% |
| !!! | AAATACTTGACTTTTATTTT+TGG | + | chr4_2:53817304-53817323 | None:intergenic | 15.0% |
| !! | CATAATTAATTCTATTCATA+TGG | + | chr4_2:53817535-53817554 | None:intergenic | 15.0% |
| !! | TGTAAAATAATTTAGAAGAA+AGG | + | chr4_2:53817633-53817652 | None:intergenic | 15.0% |
| !! | ATTAAGTTTATGTTCAATTA+AGG | + | chr4_2:53817933-53817952 | None:intergenic | 15.0% |
| !! | TGTAGAAAATAAATGTTAAT+TGG | + | chr4_2:53818669-53818688 | None:intergenic | 15.0% |
| !!! | AATTAACATTTATTTTCTAC+AGG | - | chr4_2:53818668-53818687 | Msa0607120:exon | 15.0% |
| !!! | ATTAACATTTATTTTCTACA+GGG | - | chr4_2:53818669-53818688 | Msa0607120:exon | 15.0% |
| !!! | AAGTTTTTATGAATTTCTAA+AGG | + | chr4_2:53817123-53817142 | None:intergenic | 15.0% |
| !!! | AAATACTTGACTTTTATTTT+TGG | + | chr4_2:53817304-53817323 | None:intergenic | 15.0% |
| !! | CATAATTAATTCTATTCATA+TGG | + | chr4_2:53817535-53817554 | None:intergenic | 15.0% |
| !! | TGTAAAATAATTTAGAAGAA+AGG | + | chr4_2:53817633-53817652 | None:intergenic | 15.0% |
| !! | ATTAAGTTTATGTTCAATTA+AGG | + | chr4_2:53817933-53817952 | None:intergenic | 15.0% |
| !! | TGTAGAAAATAAATGTTAAT+TGG | + | chr4_2:53818669-53818688 | None:intergenic | 15.0% |
| !!! | AATTAACATTTATTTTCTAC+AGG | - | chr4_2:53818668-53818687 | Msa0607120:exon | 15.0% |
| !!! | ATTAACATTTATTTTCTACA+GGG | - | chr4_2:53818669-53818688 | Msa0607120:exon | 15.0% |
| !! | ATGTTGAATGAAATAAATAG+AGG | + | chr4_2:53816525-53816544 | None:intergenic | 20.0% |
| !! | AAATTTGATTCCTTATACAA+TGG | + | chr4_2:53817098-53817117 | None:intergenic | 20.0% |
| !!! | GATTAAACTTTTTTGTTTGT+CGG | - | chr4_2:53817575-53817594 | Msa0607120:intron | 20.0% |
| !!! | ATTAAACTTTTTTGTTTGTC+GGG | - | chr4_2:53817576-53817595 | Msa0607120:intron | 20.0% |
| !! | TGAATTGAATAAAAGGTTTA+AGG | + | chr4_2:53817714-53817733 | None:intergenic | 20.0% |
| !!! | TTTTCATATTGAAATGAAAC+AGG | - | chr4_2:53818002-53818021 | Msa0607120:intron | 20.0% |
| !! | TGATTAGACTAGAAATAAAT+CGG | + | chr4_2:53818441-53818460 | None:intergenic | 20.0% |
| !!! | TTTCTTAGTAACTGAATTTT+AGG | - | chr4_2:53818637-53818656 | Msa0607120:CDS | 20.0% |
| !! | ATGTTGAATGAAATAAATAG+AGG | + | chr4_2:53816525-53816544 | None:intergenic | 20.0% |
| !! | AAATTTGATTCCTTATACAA+TGG | + | chr4_2:53817098-53817117 | None:intergenic | 20.0% |
| !!! | GATTAAACTTTTTTGTTTGT+CGG | - | chr4_2:53817575-53817594 | Msa0607120:intron | 20.0% |
| !!! | ATTAAACTTTTTTGTTTGTC+GGG | - | chr4_2:53817576-53817595 | Msa0607120:intron | 20.0% |
| !! | TGAATTGAATAAAAGGTTTA+AGG | + | chr4_2:53817714-53817733 | None:intergenic | 20.0% |
| !!! | TTTTCATATTGAAATGAAAC+AGG | - | chr4_2:53818002-53818021 | Msa0607120:intron | 20.0% |
| !! | TGATTAGACTAGAAATAAAT+CGG | + | chr4_2:53818441-53818460 | None:intergenic | 20.0% |
| !!! | TTTCTTAGTAACTGAATTTT+AGG | - | chr4_2:53818637-53818656 | Msa0607120:CDS | 20.0% |
| ! | AGAAAAAACAGCAAAAGAAA+TGG | + | chr4_2:53816586-53816605 | None:intergenic | 25.0% |
| !! | TTTTTCTCTGTTTAACATGA+AGG | - | chr4_2:53816599-53816618 | Msa0607120:intron | 25.0% |
| !! | TCTTATAATTTTGCATTTGC+AGG | - | chr4_2:53816834-53816853 | Msa0607120:intron | 25.0% |
| !! | CTTATAATTTTGCATTTGCA+GGG | - | chr4_2:53816835-53816854 | Msa0607120:intron | 25.0% |
| ! | TGTTACCATGATAAAAGAAA+TGG | + | chr4_2:53816952-53816971 | None:intergenic | 25.0% |
| !! | GGAATAATCACACAAAATTT+TGG | - | chr4_2:53817233-53817252 | Msa0607120:CDS | 25.0% |
| ! | CTCATTGTAATTTCATATGT+TGG | + | chr4_2:53817380-53817399 | None:intergenic | 25.0% |
| !!! | AATTATTTTACAACGACGTT+TGG | - | chr4_2:53817641-53817660 | Msa0607120:intron | 25.0% |
| !! | AAAAATGGTTGGTTATGATA+GGG | + | chr4_2:53817739-53817758 | None:intergenic | 25.0% |
| !! | AAAAAATGGTTGGTTATGAT+AGG | + | chr4_2:53817740-53817759 | None:intergenic | 25.0% |
| ! | TTTGTTAGCAAAAAAATGGT+TGG | + | chr4_2:53817750-53817769 | None:intergenic | 25.0% |
| !! | GGTTTTTGTTAGCAAAAAAA+TGG | + | chr4_2:53817754-53817773 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTAACAAAAACCA+TGG | - | chr4_2:53817755-53817774 | Msa0607120:intron | 25.0% |
| !! | TTTTTGCTAACAAAAACCAT+GGG | - | chr4_2:53817756-53817775 | Msa0607120:intron | 25.0% |
| ! | AGAGAGAATAATGCATAAAA+AGG | + | chr4_2:53817873-53817892 | None:intergenic | 25.0% |
| ! | ATATTGAAATGAAACAGGAA+TGG | - | chr4_2:53818007-53818026 | Msa0607120:intron | 25.0% |
| ! | AATGATTACACATTTCTCAT+TGG | - | chr4_2:53818247-53818266 | Msa0607120:intron | 25.0% |
| ! | AGACTTAGAATATCAAATGT+TGG | - | chr4_2:53818701-53818720 | Msa0607120:five_prime_UTR | 25.0% |
| ! | AGAAAAAACAGCAAAAGAAA+TGG | + | chr4_2:53816586-53816605 | None:intergenic | 25.0% |
| !! | TTTTTCTCTGTTTAACATGA+AGG | - | chr4_2:53816599-53816618 | Msa0607120:intron | 25.0% |
| !! | TCTTATAATTTTGCATTTGC+AGG | - | chr4_2:53816834-53816853 | Msa0607120:intron | 25.0% |
| !! | CTTATAATTTTGCATTTGCA+GGG | - | chr4_2:53816835-53816854 | Msa0607120:intron | 25.0% |
| ! | TGTTACCATGATAAAAGAAA+TGG | + | chr4_2:53816952-53816971 | None:intergenic | 25.0% |
| !! | GGAATAATCACACAAAATTT+TGG | - | chr4_2:53817233-53817252 | Msa0607120:CDS | 25.0% |
| ! | CTCATTGTAATTTCATATGT+TGG | + | chr4_2:53817380-53817399 | None:intergenic | 25.0% |
| !!! | AATTATTTTACAACGACGTT+TGG | - | chr4_2:53817641-53817660 | Msa0607120:intron | 25.0% |
| !! | AAAAATGGTTGGTTATGATA+GGG | + | chr4_2:53817739-53817758 | None:intergenic | 25.0% |
| !! | AAAAAATGGTTGGTTATGAT+AGG | + | chr4_2:53817740-53817759 | None:intergenic | 25.0% |
| ! | TTTGTTAGCAAAAAAATGGT+TGG | + | chr4_2:53817750-53817769 | None:intergenic | 25.0% |
| !! | GGTTTTTGTTAGCAAAAAAA+TGG | + | chr4_2:53817754-53817773 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTAACAAAAACCA+TGG | - | chr4_2:53817755-53817774 | Msa0607120:intron | 25.0% |
| !! | TTTTTGCTAACAAAAACCAT+GGG | - | chr4_2:53817756-53817775 | Msa0607120:intron | 25.0% |
| ! | AGAGAGAATAATGCATAAAA+AGG | + | chr4_2:53817873-53817892 | None:intergenic | 25.0% |
| ! | ATATTGAAATGAAACAGGAA+TGG | - | chr4_2:53818007-53818026 | Msa0607120:intron | 25.0% |
| ! | AATGATTACACATTTCTCAT+TGG | - | chr4_2:53818247-53818266 | Msa0607120:intron | 25.0% |
| ! | AGACTTAGAATATCAAATGT+TGG | - | chr4_2:53818701-53818720 | Msa0607120:five_prime_UTR | 25.0% |
| AACAAGGAAAATGTAAAGAG+AGG | + | chr4_2:53816491-53816510 | None:intergenic | 30.0% | |
| ! | TCTCTTTACATTTTCCTTGT+TGG | - | chr4_2:53816490-53816509 | Msa0607120:CDS | 30.0% |
| ! | CTCTTTACATTTTCCTTGTT+GGG | - | chr4_2:53816491-53816510 | Msa0607120:CDS | 30.0% |
| AAACAGCAAAAGAAATGGTT+TGG | + | chr4_2:53816581-53816600 | None:intergenic | 30.0% | |
| ATCCTTATAGATTCTTTGAC+TGG | - | chr4_2:53816694-53816713 | Msa0607120:CDS | 30.0% | |
| TTTGACTGGACTATTACTTA+CGG | - | chr4_2:53816708-53816727 | Msa0607120:CDS | 30.0% | |
| TTATCAATGGTCAATTTCCT+GGG | - | chr4_2:53816863-53816882 | Msa0607120:intron | 30.0% | |
| TTAGTAACAGAGTAGATTTC+TGG | + | chr4_2:53816889-53816908 | None:intergenic | 30.0% | |
| CATGATAAAAGAAATGGTTC+TGG | + | chr4_2:53816946-53816965 | None:intergenic | 30.0% | |
| ! | CAGAACCATTTCTTTTATCA+TGG | - | chr4_2:53816944-53816963 | Msa0607120:intron | 30.0% |
| !!! | CACGGTACTATTTTTTTCTT+TGG | - | chr4_2:53817212-53817231 | Msa0607120:CDS | 30.0% |
| ACAGTTGAGTTATTACTAGA+GGG | - | chr4_2:53817497-53817516 | Msa0607120:intron | 30.0% | |
| ! | TTTAAGGTGACAGCAAAAAA+GGG | + | chr4_2:53817698-53817717 | None:intergenic | 30.0% |
| TAGGGAGTGAATTGAATAAA+AGG | + | chr4_2:53817721-53817740 | None:intergenic | 30.0% | |
| AAAAAGGCTTTCACTTAGTT+GGG | + | chr4_2:53817857-53817876 | None:intergenic | 30.0% | |
| TAAAAAGGCTTTCACTTAGT+TGG | + | chr4_2:53817858-53817877 | None:intergenic | 30.0% | |
| AGAAATGTGTAATCATTAGC+TGG | + | chr4_2:53818244-53818263 | None:intergenic | 30.0% | |
| TATATGAATTTCAGAAGCTG+AGG | - | chr4_2:53818479-53818498 | Msa0607120:intron | 30.0% | |
| TACAACATACACTCAACTTT+AGG | - | chr4_2:53818726-53818745 | Msa0607120:five_prime_UTR | 30.0% | |
| ATGAAATTGGTTGAAGTTGA+GGG | - | chr4_2:53818764-53818783 | Msa0607120:five_prime_UTR | 30.0% | |
| AACAAGGAAAATGTAAAGAG+AGG | + | chr4_2:53816491-53816510 | None:intergenic | 30.0% | |
| ! | TCTCTTTACATTTTCCTTGT+TGG | - | chr4_2:53816490-53816509 | Msa0607120:CDS | 30.0% |
| ! | CTCTTTACATTTTCCTTGTT+GGG | - | chr4_2:53816491-53816510 | Msa0607120:CDS | 30.0% |
| AAACAGCAAAAGAAATGGTT+TGG | + | chr4_2:53816581-53816600 | None:intergenic | 30.0% | |
| ATCCTTATAGATTCTTTGAC+TGG | - | chr4_2:53816694-53816713 | Msa0607120:CDS | 30.0% | |
| TTTGACTGGACTATTACTTA+CGG | - | chr4_2:53816708-53816727 | Msa0607120:CDS | 30.0% | |
| TTATCAATGGTCAATTTCCT+GGG | - | chr4_2:53816863-53816882 | Msa0607120:intron | 30.0% | |
| TTAGTAACAGAGTAGATTTC+TGG | + | chr4_2:53816889-53816908 | None:intergenic | 30.0% | |
| CATGATAAAAGAAATGGTTC+TGG | + | chr4_2:53816946-53816965 | None:intergenic | 30.0% | |
| ! | CAGAACCATTTCTTTTATCA+TGG | - | chr4_2:53816944-53816963 | Msa0607120:intron | 30.0% |
| !!! | CACGGTACTATTTTTTTCTT+TGG | - | chr4_2:53817212-53817231 | Msa0607120:CDS | 30.0% |
| ACAGTTGAGTTATTACTAGA+GGG | - | chr4_2:53817497-53817516 | Msa0607120:intron | 30.0% | |
| ! | TTTAAGGTGACAGCAAAAAA+GGG | + | chr4_2:53817698-53817717 | None:intergenic | 30.0% |
| TAGGGAGTGAATTGAATAAA+AGG | + | chr4_2:53817721-53817740 | None:intergenic | 30.0% | |
| AAAAAGGCTTTCACTTAGTT+GGG | + | chr4_2:53817857-53817876 | None:intergenic | 30.0% | |
| TAAAAAGGCTTTCACTTAGT+TGG | + | chr4_2:53817858-53817877 | None:intergenic | 30.0% | |
| AGAAATGTGTAATCATTAGC+TGG | + | chr4_2:53818244-53818263 | None:intergenic | 30.0% | |
| TATATGAATTTCAGAAGCTG+AGG | - | chr4_2:53818479-53818498 | Msa0607120:intron | 30.0% | |
| TACAACATACACTCAACTTT+AGG | - | chr4_2:53818726-53818745 | Msa0607120:five_prime_UTR | 30.0% | |
| ATGAAATTGGTTGAAGTTGA+GGG | - | chr4_2:53818764-53818783 | Msa0607120:five_prime_UTR | 30.0% | |
| GAGTTGGACTATTACTTATG+GGG | + | chr4_2:53816559-53816578 | None:intergenic | 35.0% | |
| GGAGTTGGACTATTACTTAT+GGG | + | chr4_2:53816560-53816579 | None:intergenic | 35.0% | |
| TGGAGTTGGACTATTACTTA+TGG | + | chr4_2:53816561-53816580 | None:intergenic | 35.0% | |
| ! | CAAAAGAAATGGTTTGGAGT+TGG | + | chr4_2:53816575-53816594 | None:intergenic | 35.0% |
| AACAAAGCAAGTAGTTGCAT+TGG | + | chr4_2:53816636-53816655 | None:intergenic | 35.0% | |
| GTCCAGTCAAAGAATCTATA+AGG | + | chr4_2:53816699-53816718 | None:intergenic | 35.0% | |
| TACGGTGATATTTATCCACT+CGG | - | chr4_2:53816726-53816745 | Msa0607120:CDS | 35.0% | |
| CTTATCAATGGTCAATTTCC+TGG | - | chr4_2:53816862-53816881 | Msa0607120:intron | 35.0% | |
| GATAAGTGAGCCATTGTATA+AGG | - | chr4_2:53817085-53817104 | Msa0607120:CDS | 35.0% | |
| GATATACCTGAATACACACA+CGG | - | chr4_2:53817194-53817213 | Msa0607120:CDS | 35.0% | |
| !! | GTTTTAATGAGCAAAGAACG+AGG | - | chr4_2:53817340-53817359 | Msa0607120:intron | 35.0% |
| CACAGTTGAGTTATTACTAG+AGG | - | chr4_2:53817496-53817515 | Msa0607120:intron | 35.0% | |
| CAGTTGAGTTATTACTAGAG+GGG | - | chr4_2:53817498-53817517 | Msa0607120:intron | 35.0% | |
| TTACAACGACGTTTGGATTA+AGG | - | chr4_2:53817648-53817667 | Msa0607120:intron | 35.0% | |
| TACAACGACGTTTGGATTAA+GGG | - | chr4_2:53817649-53817668 | Msa0607120:intron | 35.0% | |
| ACAGCAAAAAAGGGAATATG+AGG | + | chr4_2:53817689-53817708 | None:intergenic | 35.0% | |
| ! | GTTTAAGGTGACAGCAAAAA+AGG | + | chr4_2:53817699-53817718 | None:intergenic | 35.0% |
| AGTAAAAATCATCACGTGTG+AGG | - | chr4_2:53817901-53817920 | Msa0607120:intron | 35.0% | |
| AGGAGAAATTCTTACCAAGA+TGG | - | chr4_2:53818040-53818059 | Msa0607120:intron | 35.0% | |
| TCTTACCAAGATGGAGTTTA+TGG | - | chr4_2:53818049-53818068 | Msa0607120:intron | 35.0% | |
| CACATATACACTTCAAGTCA+AGG | - | chr4_2:53818105-53818124 | Msa0607120:intron | 35.0% | |
| CTTCAAGTCAAGGATCAAAT+TGG | - | chr4_2:53818115-53818134 | Msa0607120:intron | 35.0% | |
| ! | TGTAATCATTAGCTGGTTCA+GGG | + | chr4_2:53818237-53818256 | None:intergenic | 35.0% |
| ! | ACACATTTCTCATTGGTGAT+TGG | - | chr4_2:53818254-53818273 | Msa0607120:intron | 35.0% |
| TTGGTACAAGATTGATCACA+CGG | - | chr4_2:53818273-53818292 | Msa0607120:intron | 35.0% | |
| GATGTGAAGATGTTTAGCTA+GGG | + | chr4_2:53818386-53818405 | None:intergenic | 35.0% | |
| AGATGTGAAGATGTTTAGCT+AGG | + | chr4_2:53818387-53818406 | None:intergenic | 35.0% | |
| ! | TCTCCAATTTAGTTCACTCA+TGG | - | chr4_2:53818404-53818423 | Msa0607120:CDS | 35.0% |
| AGACCATGAGTGAACTAAAT+TGG | + | chr4_2:53818410-53818429 | None:intergenic | 35.0% | |
| !! | CTGAGGAAAGTTCTAGATTT+CGG | - | chr4_2:53818496-53818515 | Msa0607120:intron | 35.0% |
| CATTGATAAGAACAGCTTGA+GGG | + | chr4_2:53818537-53818556 | None:intergenic | 35.0% | |
| CTTATCAATGGTCATGCAAA+TGG | - | chr4_2:53818547-53818566 | Msa0607120:CDS | 35.0% | |
| ACATCATTCACTGTTGAACA+AGG | - | chr4_2:53818571-53818590 | Msa0607120:CDS | 35.0% | |
| !! | ACACTCAACTTTAGGATTCA+AGG | - | chr4_2:53818734-53818753 | Msa0607120:five_prime_UTR | 35.0% |
| CTTCAACCAATTTCATGATG+TGG | + | chr4_2:53818760-53818779 | None:intergenic | 35.0% | |
| CATGAAATTGGTTGAAGTTG+AGG | - | chr4_2:53818763-53818782 | Msa0607120:five_prime_UTR | 35.0% | |
| GAGTTGGACTATTACTTATG+GGG | + | chr4_2:53816559-53816578 | None:intergenic | 35.0% | |
| GGAGTTGGACTATTACTTAT+GGG | + | chr4_2:53816560-53816579 | None:intergenic | 35.0% | |
| TGGAGTTGGACTATTACTTA+TGG | + | chr4_2:53816561-53816580 | None:intergenic | 35.0% | |
| ! | CAAAAGAAATGGTTTGGAGT+TGG | + | chr4_2:53816575-53816594 | None:intergenic | 35.0% |
| AACAAAGCAAGTAGTTGCAT+TGG | + | chr4_2:53816636-53816655 | None:intergenic | 35.0% | |
| GTCCAGTCAAAGAATCTATA+AGG | + | chr4_2:53816699-53816718 | None:intergenic | 35.0% | |
| TACGGTGATATTTATCCACT+CGG | - | chr4_2:53816726-53816745 | Msa0607120:CDS | 35.0% | |
| CTTATCAATGGTCAATTTCC+TGG | - | chr4_2:53816862-53816881 | Msa0607120:intron | 35.0% | |
| GATAAGTGAGCCATTGTATA+AGG | - | chr4_2:53817085-53817104 | Msa0607120:CDS | 35.0% | |
| GATATACCTGAATACACACA+CGG | - | chr4_2:53817194-53817213 | Msa0607120:CDS | 35.0% | |
| !! | GTTTTAATGAGCAAAGAACG+AGG | - | chr4_2:53817340-53817359 | Msa0607120:intron | 35.0% |
| CACAGTTGAGTTATTACTAG+AGG | - | chr4_2:53817496-53817515 | Msa0607120:intron | 35.0% | |
| CAGTTGAGTTATTACTAGAG+GGG | - | chr4_2:53817498-53817517 | Msa0607120:intron | 35.0% | |
| TTACAACGACGTTTGGATTA+AGG | - | chr4_2:53817648-53817667 | Msa0607120:intron | 35.0% | |
| TACAACGACGTTTGGATTAA+GGG | - | chr4_2:53817649-53817668 | Msa0607120:intron | 35.0% | |
| ACAGCAAAAAAGGGAATATG+AGG | + | chr4_2:53817689-53817708 | None:intergenic | 35.0% | |
| ! | GTTTAAGGTGACAGCAAAAA+AGG | + | chr4_2:53817699-53817718 | None:intergenic | 35.0% |
| AGTAAAAATCATCACGTGTG+AGG | - | chr4_2:53817901-53817920 | Msa0607120:intron | 35.0% | |
| AGGAGAAATTCTTACCAAGA+TGG | - | chr4_2:53818040-53818059 | Msa0607120:intron | 35.0% | |
| TCTTACCAAGATGGAGTTTA+TGG | - | chr4_2:53818049-53818068 | Msa0607120:intron | 35.0% | |
| CACATATACACTTCAAGTCA+AGG | - | chr4_2:53818105-53818124 | Msa0607120:intron | 35.0% | |
| CTTCAAGTCAAGGATCAAAT+TGG | - | chr4_2:53818115-53818134 | Msa0607120:intron | 35.0% | |
| ! | TGTAATCATTAGCTGGTTCA+GGG | + | chr4_2:53818237-53818256 | None:intergenic | 35.0% |
| ! | ACACATTTCTCATTGGTGAT+TGG | - | chr4_2:53818254-53818273 | Msa0607120:intron | 35.0% |
| TTGGTACAAGATTGATCACA+CGG | - | chr4_2:53818273-53818292 | Msa0607120:intron | 35.0% | |
| GATGTGAAGATGTTTAGCTA+GGG | + | chr4_2:53818386-53818405 | None:intergenic | 35.0% | |
| AGATGTGAAGATGTTTAGCT+AGG | + | chr4_2:53818387-53818406 | None:intergenic | 35.0% | |
| ! | TCTCCAATTTAGTTCACTCA+TGG | - | chr4_2:53818404-53818423 | Msa0607120:CDS | 35.0% |
| AGACCATGAGTGAACTAAAT+TGG | + | chr4_2:53818410-53818429 | None:intergenic | 35.0% | |
| !! | CTGAGGAAAGTTCTAGATTT+CGG | - | chr4_2:53818496-53818515 | Msa0607120:intron | 35.0% |
| CATTGATAAGAACAGCTTGA+GGG | + | chr4_2:53818537-53818556 | None:intergenic | 35.0% | |
| CTTATCAATGGTCATGCAAA+TGG | - | chr4_2:53818547-53818566 | Msa0607120:CDS | 35.0% | |
| ACATCATTCACTGTTGAACA+AGG | - | chr4_2:53818571-53818590 | Msa0607120:CDS | 35.0% | |
| !! | ACACTCAACTTTAGGATTCA+AGG | - | chr4_2:53818734-53818753 | Msa0607120:five_prime_UTR | 35.0% |
| CTTCAACCAATTTCATGATG+TGG | + | chr4_2:53818760-53818779 | None:intergenic | 35.0% | |
| CATGAAATTGGTTGAAGTTG+AGG | - | chr4_2:53818763-53818782 | Msa0607120:five_prime_UTR | 35.0% | |
| ! | TTGCAGGGCATTCTTATCAA+TGG | - | chr4_2:53816850-53816869 | Msa0607120:intron | 40.0% |
| ATAGTACCGTGTGTGTATTC+AGG | + | chr4_2:53817203-53817222 | None:intergenic | 40.0% | |
| AATGAGCAAAGAACGAGGTT+TGG | - | chr4_2:53817345-53817364 | Msa0607120:intron | 40.0% | |
| GGGTGCATTTATTAAACCCA+TGG | + | chr4_2:53817775-53817794 | None:intergenic | 40.0% | |
| GATCCGTGACATGACATTAA+GGG | + | chr4_2:53817815-53817834 | None:intergenic | 40.0% | |
| TGATCCGTGACATGACATTA+AGG | + | chr4_2:53817816-53817835 | None:intergenic | 40.0% | |
| ACAGGAATGGTGTTCAACAA+AGG | - | chr4_2:53818020-53818039 | Msa0607120:intron | 40.0% | |
| TGGTTCCATAAACTCCATCT+TGG | + | chr4_2:53818057-53818076 | None:intergenic | 40.0% | |
| GTATATGTGAAGTTCTTCCC+AGG | + | chr4_2:53818094-53818113 | None:intergenic | 40.0% | |
| GCTTTGTGAAAAGCAAGAGA+TGG | + | chr4_2:53818157-53818176 | None:intergenic | 40.0% | |
| GATCCATCAAAATCCTTAGC+AGG | - | chr4_2:53818191-53818210 | Msa0607120:intron | 40.0% | |
| ! | GTGTAATCATTAGCTGGTTC+AGG | + | chr4_2:53818238-53818257 | None:intergenic | 40.0% |
| CCATTGATAAGAACAGCTTG+AGG | + | chr4_2:53818538-53818557 | None:intergenic | 40.0% | |
| CCTCAAGCTGTTCTTATCAA+TGG | - | chr4_2:53818535-53818554 | Msa0607120:CDS | 40.0% | |
| TCAAGGCCACATCATGAAAT+TGG | - | chr4_2:53818751-53818770 | Msa0607120:five_prime_UTR | 40.0% | |
| ! | TTGCAGGGCATTCTTATCAA+TGG | - | chr4_2:53816850-53816869 | Msa0607120:intron | 40.0% |
| ATAGTACCGTGTGTGTATTC+AGG | + | chr4_2:53817203-53817222 | None:intergenic | 40.0% | |
| AATGAGCAAAGAACGAGGTT+TGG | - | chr4_2:53817345-53817364 | Msa0607120:intron | 40.0% | |
| GGGTGCATTTATTAAACCCA+TGG | + | chr4_2:53817775-53817794 | None:intergenic | 40.0% | |
| GATCCGTGACATGACATTAA+GGG | + | chr4_2:53817815-53817834 | None:intergenic | 40.0% | |
| TGATCCGTGACATGACATTA+AGG | + | chr4_2:53817816-53817835 | None:intergenic | 40.0% | |
| ACAGGAATGGTGTTCAACAA+AGG | - | chr4_2:53818020-53818039 | Msa0607120:intron | 40.0% | |
| TGGTTCCATAAACTCCATCT+TGG | + | chr4_2:53818057-53818076 | None:intergenic | 40.0% | |
| GTATATGTGAAGTTCTTCCC+AGG | + | chr4_2:53818094-53818113 | None:intergenic | 40.0% | |
| GCTTTGTGAAAAGCAAGAGA+TGG | + | chr4_2:53818157-53818176 | None:intergenic | 40.0% | |
| GATCCATCAAAATCCTTAGC+AGG | - | chr4_2:53818191-53818210 | Msa0607120:intron | 40.0% | |
| ! | GTGTAATCATTAGCTGGTTC+AGG | + | chr4_2:53818238-53818257 | None:intergenic | 40.0% |
| CCATTGATAAGAACAGCTTG+AGG | + | chr4_2:53818538-53818557 | None:intergenic | 40.0% | |
| CCTCAAGCTGTTCTTATCAA+TGG | - | chr4_2:53818535-53818554 | Msa0607120:CDS | 40.0% | |
| TCAAGGCCACATCATGAAAT+TGG | - | chr4_2:53818751-53818770 | Msa0607120:five_prime_UTR | 40.0% | |
| AGAGGAAGAGAAACCCAACA+AGG | + | chr4_2:53816507-53816526 | None:intergenic | 45.0% | |
| TCCACTCGGAGTTAAACAAC+AGG | - | chr4_2:53816740-53816759 | Msa0607120:CDS | 45.0% | |
| ! | ACCTGTTGTTTAACTCCGAG+TGG | + | chr4_2:53816744-53816763 | None:intergenic | 45.0% |
| GACATTAAGGGCCTAAGTGA+TGG | + | chr4_2:53817803-53817822 | None:intergenic | 45.0% | |
| AGGCCCTTAATGTCATGTCA+CGG | - | chr4_2:53817809-53817828 | Msa0607120:intron | 45.0% | |
| ATGTGAAGTTCTTCCCAGGA+GGG | + | chr4_2:53818090-53818109 | None:intergenic | 45.0% | |
| TATGTGAAGTTCTTCCCAGG+AGG | + | chr4_2:53818091-53818110 | None:intergenic | 45.0% | |
| !! | CTTGCTTTTCACAAAGCTGC+TGG | - | chr4_2:53818160-53818179 | Msa0607120:intron | 45.0% |
| ! | TGGCCTGCTAAGGATTTTGA+TGG | + | chr4_2:53818197-53818216 | None:intergenic | 45.0% |
| TCAAAATCCTTAGCAGGCCA+AGG | - | chr4_2:53818197-53818216 | Msa0607120:intron | 45.0% | |
| ! | TCATTAGCTGGTTCAGGGAA+AGG | + | chr4_2:53818232-53818251 | None:intergenic | 45.0% |
| ATAAGAACAGCTTGAGGGAG+TGG | + | chr4_2:53818532-53818551 | None:intergenic | 45.0% | |
| AGAGGAAGAGAAACCCAACA+AGG | + | chr4_2:53816507-53816526 | None:intergenic | 45.0% | |
| TCCACTCGGAGTTAAACAAC+AGG | - | chr4_2:53816740-53816759 | Msa0607120:CDS | 45.0% | |
| ! | ACCTGTTGTTTAACTCCGAG+TGG | + | chr4_2:53816744-53816763 | None:intergenic | 45.0% |
| GACATTAAGGGCCTAAGTGA+TGG | + | chr4_2:53817803-53817822 | None:intergenic | 45.0% | |
| AGGCCCTTAATGTCATGTCA+CGG | - | chr4_2:53817809-53817828 | Msa0607120:intron | 45.0% | |
| ATGTGAAGTTCTTCCCAGGA+GGG | + | chr4_2:53818090-53818109 | None:intergenic | 45.0% | |
| TATGTGAAGTTCTTCCCAGG+AGG | + | chr4_2:53818091-53818110 | None:intergenic | 45.0% | |
| !! | CTTGCTTTTCACAAAGCTGC+TGG | - | chr4_2:53818160-53818179 | Msa0607120:intron | 45.0% |
| ! | TGGCCTGCTAAGGATTTTGA+TGG | + | chr4_2:53818197-53818216 | None:intergenic | 45.0% |
| TCAAAATCCTTAGCAGGCCA+AGG | - | chr4_2:53818197-53818216 | Msa0607120:intron | 45.0% | |
| ! | TCATTAGCTGGTTCAGGGAA+AGG | + | chr4_2:53818232-53818251 | None:intergenic | 45.0% |
| ATAAGAACAGCTTGAGGGAG+TGG | + | chr4_2:53818532-53818551 | None:intergenic | 45.0% | |
| !! | ACAGAGTAGATTTCTGGCCC+AGG | + | chr4_2:53816883-53816902 | None:intergenic | 50.0% |
| AGGGCCTAAGTGATGGTTGA+GGG | + | chr4_2:53817796-53817815 | None:intergenic | 50.0% | |
| AAGGGCCTAAGTGATGGTTG+AGG | + | chr4_2:53817797-53817816 | None:intergenic | 50.0% | |
| ! | AGTTGGGCTTGGAGTTGGTT+GGG | + | chr4_2:53817841-53817860 | None:intergenic | 50.0% |
| ! | TAGTTGGGCTTGGAGTTGGT+TGG | + | chr4_2:53817842-53817861 | None:intergenic | 50.0% |
| CACTTAGTTGGGCTTGGAGT+TGG | + | chr4_2:53817846-53817865 | None:intergenic | 50.0% | |
| GGCTTTCACTTAGTTGGGCT+TGG | + | chr4_2:53817852-53817871 | None:intergenic | 50.0% | |
| AAGTTCTTCCCAGGAGGGAT+GGG | + | chr4_2:53818085-53818104 | None:intergenic | 50.0% | |
| ! | GCTTTTCACAAAGCTGCTGG+TGG | - | chr4_2:53818163-53818182 | Msa0607120:intron | 50.0% |
| ! | CACAAAGCTGCTGGTGGTTT+TGG | - | chr4_2:53818169-53818188 | Msa0607120:intron | 50.0% |
| GGGAAAGGAACAGGAATCCT+TGG | + | chr4_2:53818217-53818236 | None:intergenic | 50.0% | |
| !! | ACAGAGTAGATTTCTGGCCC+AGG | + | chr4_2:53816883-53816902 | None:intergenic | 50.0% |
| AGGGCCTAAGTGATGGTTGA+GGG | + | chr4_2:53817796-53817815 | None:intergenic | 50.0% | |
| AAGGGCCTAAGTGATGGTTG+AGG | + | chr4_2:53817797-53817816 | None:intergenic | 50.0% | |
| ! | AGTTGGGCTTGGAGTTGGTT+GGG | + | chr4_2:53817841-53817860 | None:intergenic | 50.0% |
| ! | TAGTTGGGCTTGGAGTTGGT+TGG | + | chr4_2:53817842-53817861 | None:intergenic | 50.0% |
| CACTTAGTTGGGCTTGGAGT+TGG | + | chr4_2:53817846-53817865 | None:intergenic | 50.0% | |
| GGCTTTCACTTAGTTGGGCT+TGG | + | chr4_2:53817852-53817871 | None:intergenic | 50.0% | |
| AAGTTCTTCCCAGGAGGGAT+GGG | + | chr4_2:53818085-53818104 | None:intergenic | 50.0% | |
| ! | GCTTTTCACAAAGCTGCTGG+TGG | - | chr4_2:53818163-53818182 | Msa0607120:intron | 50.0% |
| ! | CACAAAGCTGCTGGTGGTTT+TGG | - | chr4_2:53818169-53818188 | Msa0607120:intron | 50.0% |
| GGGAAAGGAACAGGAATCCT+TGG | + | chr4_2:53818217-53818236 | None:intergenic | 50.0% | |
| GCACCCCTCAACCATCACTT+AGG | - | chr4_2:53817789-53817808 | Msa0607120:intron | 55.0% | |
| GGGCCTAAGTGATGGTTGAG+GGG | + | chr4_2:53817795-53817814 | None:intergenic | 55.0% | |
| GAAGTTCTTCCCAGGAGGGA+TGG | + | chr4_2:53818086-53818105 | None:intergenic | 55.0% | |
| CAGGAATCCTTGGCCTGCTA+AGG | + | chr4_2:53818207-53818226 | None:intergenic | 55.0% | |
| ! | GCTGGTTCAGGGAAAGGAAC+AGG | + | chr4_2:53818226-53818245 | None:intergenic | 55.0% |
| GCACCCCTCAACCATCACTT+AGG | - | chr4_2:53817789-53817808 | Msa0607120:intron | 55.0% | |
| GGGCCTAAGTGATGGTTGAG+GGG | + | chr4_2:53817795-53817814 | None:intergenic | 55.0% | |
| GAAGTTCTTCCCAGGAGGGA+TGG | + | chr4_2:53818086-53818105 | None:intergenic | 55.0% | |
| CAGGAATCCTTGGCCTGCTA+AGG | + | chr4_2:53818207-53818226 | None:intergenic | 55.0% | |
| ! | GCTGGTTCAGGGAAAGGAAC+AGG | + | chr4_2:53818226-53818245 | None:intergenic | 55.0% |
| ACCACATGTCCCATCCCTCC+TGG | - | chr4_2:53818073-53818092 | Msa0607120:intron | 60.0% | |
| CCACATGTCCCATCCCTCCT+GGG | - | chr4_2:53818074-53818093 | Msa0607120:intron | 60.0% | |
| ACCACATGTCCCATCCCTCC+TGG | - | chr4_2:53818073-53818092 | Msa0607120:intron | 60.0% | |
| CCACATGTCCCATCCCTCCT+GGG | - | chr4_2:53818074-53818093 | Msa0607120:intron | 60.0% | |
| CCCAGGAGGGATGGGACATG+TGG | + | chr4_2:53818077-53818096 | None:intergenic | 65.0% | |
| CCCAGGAGGGATGGGACATG+TGG | + | chr4_2:53818077-53818096 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53816486 | 53818799 | 53816486 | ID=Msa0607120;Name=Msa0607120 |
| chr4_2 | mRNA | 53816486 | 53818799 | 53816486 | ID=Msa0607120-mRNA-1;Parent=Msa0607120;Name=Msa0607120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=129|1|0.8|1|1|1|5|0|246 |
| chr4_2 | exon | 53816486 | 53816595 | 53816486 | ID=Msa0607120-mRNA-1:exon:13391;Parent=Msa0607120-mRNA-1 |
| chr4_2 | exon | 53816693 | 53816792 | 53816693 | ID=Msa0607120-mRNA-1:exon:13390;Parent=Msa0607120-mRNA-1 |
| chr4_2 | exon | 53816991 | 53817261 | 53816991 | ID=Msa0607120-mRNA-1:exon:13389;Parent=Msa0607120-mRNA-1 |
| chr4_2 | exon | 53818320 | 53818429 | 53818320 | ID=Msa0607120-mRNA-1:exon:13388;Parent=Msa0607120-mRNA-1 |
| chr4_2 | exon | 53818524 | 53818799 | 53818524 | ID=Msa0607120-mRNA-1:exon:13387;Parent=Msa0607120-mRNA-1 |
| chr4_2 | five_prime_UTR | 53818671 | 53818799 | 53818671 | ID=Msa0607120-mRNA-1:five_prime_utr;Parent=Msa0607120-mRNA-1 |
| chr4_2 | CDS | 53818524 | 53818670 | 53818524 | ID=Msa0607120-mRNA-1:cds;Parent=Msa0607120-mRNA-1 |
| chr4_2 | CDS | 53818320 | 53818429 | 53818320 | ID=Msa0607120-mRNA-1:cds;Parent=Msa0607120-mRNA-1 |
| chr4_2 | CDS | 53816991 | 53817261 | 53816991 | ID=Msa0607120-mRNA-1:cds;Parent=Msa0607120-mRNA-1 |
| chr4_2 | CDS | 53816693 | 53816792 | 53816693 | ID=Msa0607120-mRNA-1:cds;Parent=Msa0607120-mRNA-1 |
| chr4_2 | CDS | 53816486 | 53816595 | 53816486 | ID=Msa0607120-mRNA-1:cds;Parent=Msa0607120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
