AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384060 MtrunA17_Chr3g0140821 100.000 451 0 0 1 451 1 451 0.0 939
Msa0384060 MtrunA17_Chr4g0054511 97.118 451 13 0 1 451 1 451 0.0 914
Msa0384060 MtrunA17_Chr1g0206881 97.550 449 11 0 1 449 1 449 0.0 914
Msa0384060 MtrunA17_Chr8g0378821 92.874 435 31 0 1 435 1 435 0.0 834
Msa0384060 MtrunA17_Chr7g0253411 91.403 442 38 0 1 442 1 442 0.0 829
Msa0384060 MtrunA17_Chr6g0461281 83.628 452 69 3 1 451 1 448 0.0 774
Msa0384060 MtrunA17_Chr2g0300491 73.719 449 113 2 1 449 1 444 0.0 661
Msa0384060 MtrunA17_Chr2g0300671 74.603 441 107 2 1 441 1 436 0.0 658
Msa0384060 MtrunA17_Chr4g0051631 42.166 434 241 2 1 434 1 424 8.52e-126 372
Msa0384060 MtrunA17_Chr8g0393021 41.372 452 254 3 1 450 1 443 8.80e-126 372
Msa0384060 MtrunA17_Chr4g0008401 42.396 434 240 2 1 434 1 424 1.40e-124 369
Msa0384060 MtrunA17_Chr4g0008361 41.705 434 243 2 1 434 1 424 1.94e-124 369
Msa0384060 MtrunA17_Chr1g0203181 41.705 434 243 2 1 434 1 424 4.76e-124 368
Msa0384060 MtrunA17_Chr2g0292921 41.705 434 243 2 1 434 1 424 5.15e-124 367
Msa0384060 MtrunA17_Chr7g0255791 41.876 437 238 4 1 434 1 424 1.12e-123 367
Msa0384060 MtrunA17_Chr4g0007371 41.514 436 243 3 1 434 1 426 4.59e-123 365
Msa0384060 MtrunA17_Chr3g0142731 40.503 437 246 3 1 434 1 426 4.59e-123 365
Msa0384060 MtrunA17_Chr8g0386781 39.545 440 256 2 1 440 1 430 3.32e-122 363
Msa0384060 MtrunA17_Chr3g0109241 97.101 138 4 0 268 405 1 138 2.95e-96 286
Msa0384060 MtrunA17_Chr7g0275431 31.614 446 282 9 2 433 3 439 1.01e-76 247
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384060 AT4G14960.2 97.105 449 13 0 1 449 1 449 0.0 913
Msa0384060 AT1G50010.1 96.882 449 14 0 1 449 1 449 0.0 911
Msa0384060 AT1G04820.1 96.882 449 14 0 1 449 1 449 0.0 911
Msa0384060 AT5G19780.1 93.793 435 27 0 1 435 1 435 0.0 839
Msa0384060 AT5G19770.1 93.793 435 27 0 1 435 1 435 0.0 839
Msa0384060 AT1G64740.1 90.345 435 42 0 1 435 1 435 0.0 813
Msa0384060 AT4G14960.1 94.103 407 17 1 1 407 1 400 0.0 800
Msa0384060 AT1G75780.1 41.475 434 245 2 1 434 1 425 1.61e-126 374
Msa0384060 AT5G62690.1 41.935 434 242 2 1 434 1 424 3.91e-125 371
Msa0384060 AT5G62700.1 41.935 434 242 2 1 434 1 424 3.91e-125 371
Msa0384060 AT1G20010.1 41.475 434 245 2 1 434 1 425 1.17e-124 370
Msa0384060 AT2G29550.1 41.270 441 249 2 1 441 1 431 1.89e-124 369
Msa0384060 AT5G12250.1 41.876 437 238 4 1 434 1 424 2.42e-124 369
Msa0384060 AT4G20890.1 41.935 434 242 2 1 434 1 424 5.54e-124 368
Msa0384060 AT5G23860.2 41.705 434 243 2 1 434 1 424 7.82e-124 368
Msa0384060 AT5G23860.1 41.705 434 243 2 1 434 1 424 7.82e-124 368
Msa0384060 AT5G44340.1 41.705 434 243 3 1 434 1 424 5.16e-122 363
Msa0384060 AT5G05620.1 32.287 446 279 9 2 433 3 439 5.71e-78 250
Msa0384060 AT3G61650.1 31.839 446 281 9 2 433 3 439 1.15e-76 247

Find 191 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCGTTTATCTGTTGATTA+TGG 0.257743 3_1:-87122807 Msa0384060:CDS
TACCGGTCTGCAAGGTTTCT+TGG 0.265637 3_1:-87122883 Msa0384060:CDS
ACTGCCTCTTTGAGGTTTGA+TGG 0.279194 3_1:-87122393 Msa0384060:CDS
AATGGTCCTCTTGGTCTTGA+TGG 0.297222 3_1:+87122107 None:intergenic
GTGAATCTCTCTTTCTTTGT+TGG 0.305673 3_1:-87121613 Msa0384060:three_prime_UTR
GGCGCGTGGAACATGCTTTC+CGG 0.314398 3_1:+87123200 None:intergenic
CATCCCTCACTGCCTCTTTG+AGG 0.314555 3_1:-87122401 Msa0384060:CDS
CAGCCTCCAACTGTTGTTCC+TGG 0.314809 3_1:-87122036 Msa0384060:CDS
TGGTGGAACCGGATCTGGTT+TGG 0.315781 3_1:-87122844 Msa0384060:CDS
GGTGGAACCGGATCTGGTTT+GGG 0.317975 3_1:-87122843 Msa0384060:CDS
TTTGTTGATTGGTGTCCAAC+TGG 0.322748 3_1:-87122081 Msa0384060:CDS
TTCATTGGTGCAGGATTGTT+TGG 0.333424 3_1:-87121406 Msa0384060:three_prime_UTR
GAAACTAAATTTGAAATGTA+TGG 0.336098 3_1:+87123675 None:intergenic
TTGCCGCTGATGAGTTGTTC+AGG 0.339225 3_1:+87123108 None:intergenic
TACAGTTATCTGCTAGCTTT+CGG 0.351362 3_1:+87122904 None:intergenic
AACACGTTCTTCAGCGAAAC+CGG 0.359208 3_1:-87123225 Msa0384060:CDS
CTGTTCTCCTCAACGGACAT+TGG 0.381261 3_1:-87120883 Msa0384060:three_prime_UTR
TATTAGAAATTTAATCTTTG+TGG 0.382619 3_1:-87120931 Msa0384060:three_prime_UTR
TATTAGAAATTTAATCTTTG+TGG 0.382619 3_1:-87121221 Msa0384060:three_prime_UTR
CCTCAATCGCCTTGTCTCTC+AGG 0.383066 3_1:-87122592 Msa0384060:intron
TAAATTTGAAATGTATGGTT+AGG 0.390192 3_1:+87123680 None:intergenic
CTGCCTTGAACACGGCATTC+AGG 0.391474 3_1:-87123422 Msa0384060:intron
CGGTCTTGTCTCCAGGCATC+TGG 0.396008 3_1:+87123271 None:intergenic
TCTCCAGGCATCTGGCCATC+AGG 0.405017 3_1:+87123279 None:intergenic
TGGTTTGGGTTCTCTTCTGT+TGG 0.405165 3_1:-87122829 Msa0384060:CDS
TGTTCTCCTCAACGGACATT+GGG 0.406258 3_1:-87120882 Msa0384060:three_prime_UTR
GCCTTCTCAGCAGAGATAAC+AGG 0.413340 3_1:+87122288 None:intergenic
CAGCCTGATGGCCAGATGCC+TGG 0.419485 3_1:-87123282 Msa0384060:CDS
TCTTCTTCACAAAATTCAAA+AGG 0.419881 3_1:-87123607 Msa0384060:five_prime_UTR
CCTCCAACGGTCTTGTCTCC+AGG 0.420149 3_1:+87123264 None:intergenic
GTGGGTGGTGGAACCGGATC+TGG 0.423776 3_1:-87122849 Msa0384060:CDS
ATTAGAAATTTAATCTTTGT+GGG 0.425010 3_1:-87120930 Msa0384060:three_prime_UTR
ATTAGAAATTTAATCTTTGT+GGG 0.425010 3_1:-87121220 Msa0384060:three_prime_UTR
TTACCTGAATGCCGTGTTCA+AGG 0.426104 3_1:+87123419 None:intergenic
TGAGGATTACTAGATCTTGC+AGG 0.428042 3_1:-87121764 Msa0384060:exon
GAGGAGGTTGGTGCTGAGTC+TGG 0.430544 3_1:-87121811 Msa0384060:CDS
GGACCATTCAGTTTGTTGAT+TGG 0.433267 3_1:-87122092 Msa0384060:CDS
TTCTTGGTGTTCAATGCTGT+GGG 0.434584 3_1:-87122867 Msa0384060:CDS
CGGCAACAGAAAGCTGTTCA+TGG 0.435869 3_1:+87122262 None:intergenic
TGGAACATGCTTTCCGGCAC+CGG 0.438085 3_1:+87123206 None:intergenic
TTACTATGTTTCATTGGTGC+AGG 0.439459 3_1:-87121415 Msa0384060:three_prime_UTR
AGATCATGCACACAGCCCTT+TGG 0.440237 3_1:+87121995 None:intergenic
GTGTTCAATGCTGTGGGTGG+TGG 0.440766 3_1:-87122861 Msa0384060:CDS
TGTTCATTACTATGTTTCAT+TGG 0.442387 3_1:-87121421 Msa0384060:three_prime_UTR
CAGTGTGCTCAAGGAGGGAA+TGG 0.443924 3_1:+87122697 None:intergenic
CTCCTCAACGGACATACATT+GGG 0.446080 3_1:-87121168 Msa0384060:three_prime_UTR
TTGGTATGTTGGTGAGGGTA+TGG 0.447387 3_1:-87121890 Msa0384060:CDS
GCGATTGAGGTTGGTGTAAG+TGG 0.449517 3_1:+87122605 None:intergenic
AATGCTGTGGGTGGTGGAAC+CGG 0.451993 3_1:-87122855 Msa0384060:CDS
ATCAAACTTATGATCAATCC+TGG 0.453188 3_1:+87121942 None:intergenic
GTGAAGAAGAATGGAAATGA+AGG 0.453754 3_1:+87123620 None:intergenic
GAAGAAAGAAGAAGAAGAAA+CGG 0.457480 3_1:+87123553 None:intergenic
GGTTGAAAGGACACTGTTGT+AGG 0.458409 3_1:+87122719 None:intergenic
ACGCGCCGTCTTCGTAGATC+TGG 0.458537 3_1:-87123184 Msa0384060:CDS
AACAAACTGAATGGTCCTCT+TGG 0.460464 3_1:+87122098 None:intergenic
CTTCTTCACAAAATTCAAAA+GGG 0.461873 3_1:-87123606 Msa0384060:five_prime_UTR
TCCAGGTCGGAAATGCCTGC+TGG 0.462149 3_1:-87123453 Msa0384060:CDS
TGCCGCTGATGAGTTGTTCA+GGG 0.465671 3_1:+87123109 None:intergenic
GGCATTTCCGACCTGGATAC+CGG 0.466918 3_1:+87123459 None:intergenic
AAAAGCACTGTTGGTGATCT+CGG 0.470781 3_1:+87122242 None:intergenic
CCCAGCAGGCATTTCCGACC+TGG 0.472516 3_1:+87123452 None:intergenic
TATTGGATGTGGATTTCCAT+TGG 0.475872 3_1:-87121542 Msa0384060:three_prime_UTR
GAAAGCATGAAATGGATCCT+AGG 0.478017 3_1:+87122321 None:intergenic
CCTGAGAGACAAGGCGATTG+AGG 0.482372 3_1:+87122592 None:intergenic
ATGACCACGGGCGAAGTTGT+TGG 0.484462 3_1:+87123074 None:intergenic
GCACACAGCCCTTTGGACCT+TGG 0.485066 3_1:+87122002 None:intergenic
CATTGGTCAAGCCGGTATCC+AGG 0.488348 3_1:-87123470 Msa0384060:CDS
CGTACGAGGAAAGCATGAAA+TGG 0.493705 3_1:+87122313 None:intergenic
GGTGATGGAGATGATGTTGA+TGG 0.495196 3_1:-87121790 Msa0384060:CDS
GTGAAAATAGTTGCATGAGT+TGG 0.495985 3_1:+87121506 None:intergenic
GTCATTGACGAAGTCAGAAC+CGG 0.497007 3_1:-87123153 Msa0384060:CDS
GAGGTAGAAACCTGGGGAGA+TGG 0.498412 3_1:+87122753 None:intergenic
GTGCATTGGTATGTTGGTGA+GGG 0.501347 3_1:-87121895 Msa0384060:CDS
TTTCTTGGTGTTCAATGCTG+TGG 0.502010 3_1:-87122868 Msa0384060:CDS
CTGACTTCGTCAATGACGGT+TGG 0.504857 3_1:+87123159 None:intergenic
TACCGTTTATCCATCTCCCC+AGG 0.505210 3_1:-87122763 Msa0384060:CDS
AAGAGAACCCAAACCAGATC+CGG 0.505914 3_1:+87122836 None:intergenic
TGCTCTCGAGAAGGATTATG+AGG 0.507547 3_1:-87121830 Msa0384060:CDS
ACACAGACGTATCAACAGTC+TGG 0.508138 3_1:+87120831 None:intergenic
ACACAGACGTATCAACAGTC+TGG 0.508138 3_1:+87121117 None:intergenic
TTCTTCAGCGAAACCGGTGC+CGG 0.513072 3_1:-87123219 Msa0384060:CDS
CCCTCGCCATGGAAAATACA+TGG 0.514501 3_1:-87122190 Msa0384060:CDS
TGTATGGTTAGGAATTAACT+AGG 0.520240 3_1:+87123691 None:intergenic
CCAATGCACAAAAGCACGCT+TGG 0.520245 3_1:+87121909 None:intergenic
AGAAGAAGAAGAAACGGAAG+AGG 0.523866 3_1:+87123559 None:intergenic
AAGCTATCTATGACATATGC+AGG 0.524385 3_1:-87122650 Msa0384060:CDS
GGTTCTGACTTCGTCAATGA+CGG 0.528328 3_1:+87123155 None:intergenic
AACCTGGGGAGATGGATAAA+CGG 0.532949 3_1:+87122761 None:intergenic
AGGGTCACACTTAGCCATCA+TGG 0.532951 3_1:+87122209 None:intergenic
AACAGAGTTTCAAACCAACT+TGG 0.533094 3_1:-87122352 Msa0384060:CDS
CACTTAGCCATCATGGAAGA+AGG 0.536043 3_1:+87122216 None:intergenic
AGAAGGTTCAAAAGCACTGT+TGG 0.538677 3_1:+87122233 None:intergenic
CCGCGGTGATGTTGTGCCTA+AGG 0.540342 3_1:-87122151 Msa0384060:CDS
GTGATCTTGCCAAGGTCCAA+AGG 0.540632 3_1:-87122011 Msa0384060:CDS
TCTCCTCAACGGACATACAT+TGG 0.543476 3_1:-87121169 Msa0384060:three_prime_UTR
ATGAAATGGATCCTAGGGTA+AGG 0.544980 3_1:+87122327 None:intergenic
CCAGGTCGGAAATGCCTGCT+GGG 0.545543 3_1:-87123452 Msa0384060:CDS
GTTCAGGGTGGAAGAGTTGA+CGG 0.545624 3_1:+87123124 None:intergenic
GTTGGTGAGGGTATGGAAGA+AGG 0.547203 3_1:-87121883 Msa0384060:CDS
TCCTGGTGGTGATCTTGCCA+AGG 0.548720 3_1:-87122019 Msa0384060:CDS
TTGTTGATTGGTGTCCAACT+GGG 0.551076 3_1:-87122080 Msa0384060:CDS
TCAATCCACATTGGTCAAGC+CGG 0.555162 3_1:-87123478 Msa0384060:CDS
ATAAACGGTAAAACCCAACT+TGG 0.555240 3_1:+87122776 None:intergenic
GTTGGTGCTGAGTCTGGTGA+TGG 0.556011 3_1:-87121805 Msa0384060:CDS
CCACCAGGAACAACAGTTGG+AGG 0.556528 3_1:+87122033 None:intergenic
TGCATCATCTCCTCCTCCAA+CGG 0.556914 3_1:+87123251 None:intergenic
CAGGAACAACAGTTGGAGGC+TGG 0.557000 3_1:+87122037 None:intergenic
CCTGGAGACAAGACCGTTGG+AGG 0.557403 3_1:-87123264 Msa0384060:CDS
TAACTAGGGTTAGCTCACCT+TGG 0.557921 3_1:+87123706 None:intergenic
TGTGCATTGGTATGTTGGTG+AGG 0.557980 3_1:-87121896 Msa0384060:CDS
TCACCACCAGGAACAACAGT+TGG 0.562091 3_1:+87122030 None:intergenic
GGAGACAAGACCGTTGGAGG+AGG 0.562701 3_1:-87123261 Msa0384060:CDS
AAGAAGAAACGGAAGAGGAG+CGG 0.563469 3_1:+87123564 None:intergenic
CAGCAACATCAGTGTGCTCA+AGG 0.564079 3_1:+87122688 None:intergenic
CAAGGAGGGAATGGGTTGAA+AGG 0.564699 3_1:+87122706 None:intergenic
TATAGTAAAGCCCAATGCTA+AGG 0.565735 3_1:+87121484 None:intergenic
CACCAAGAAACCTTGCAGAC+CGG 0.566087 3_1:+87122881 None:intergenic
TGAAGAAGAATGGAAATGAA+GGG 0.566168 3_1:+87123621 None:intergenic
TATCAACAGTCTGGAGATTG+TGG 0.566378 3_1:+87120840 None:intergenic
TATCAACAGTCTGGAGATTG+TGG 0.566378 3_1:+87121126 None:intergenic
TAACTCTACCAGTGTTGCTG+AGG 0.566930 3_1:-87121971 Msa0384060:CDS
TTTGTGTCCTTCAGTTGGGA+AGG 0.568538 3_1:-87122955 Msa0384060:intron
AAAGCATGAAATGGATCCTA+GGG 0.569228 3_1:+87122322 None:intergenic
ACACCAATCAACAAACTGAA+TGG 0.571183 3_1:+87122089 None:intergenic
ATACCGCACTTGAACCCAGT+TGG 0.571477 3_1:+87122066 None:intergenic
GTTGAAAGGACACTGTTGTA+GGG 0.573119 3_1:+87122720 None:intergenic
GGAAAACACCTCAGCAACAC+TGG 0.575051 3_1:+87121963 None:intergenic
AGAGACAAGGCGATTGAGGT+TGG 0.575918 3_1:+87122596 None:intergenic
TCAACAATGACTTGAAAACT+AGG 0.576687 3_1:-87121078 Msa0384060:three_prime_UTR
TCAACAATGACTTGAAAACT+AGG 0.577097 3_1:-87120792 Msa0384060:three_prime_UTR
ACCTGTTATCTCTGCTGAGA+AGG 0.577342 3_1:-87122289 Msa0384060:CDS
AAACCTCAAAGAGGCAGTGA+GGG 0.578416 3_1:+87122398 None:intergenic
TGAGTTCTCTGAGGCTCGTG+AGG 0.578430 3_1:-87121860 Msa0384060:CDS
AACCACAGAGGTAGAAACCT+GGG 0.579213 3_1:+87122746 None:intergenic
ATGCCTGGAGACAAGACCGT+TGG 0.583327 3_1:-87123267 Msa0384060:CDS
ACCACGGGCGAAGTTGTTGG+CGG 0.584023 3_1:+87123077 None:intergenic
GAGAAGGATTATGAGGAGGT+TGG 0.588091 3_1:-87121823 Msa0384060:CDS
GAACTTTACTGCCTTGAACA+CGG 0.589043 3_1:-87123430 Msa0384060:CDS
TGATCTTGCCAAGGTCCAAA+GGG 0.589383 3_1:-87122010 Msa0384060:CDS
AACATCAGTGTGCTCAAGGA+GGG 0.590528 3_1:+87122692 None:intergenic
AGTGTGCTCAAGGAGGGAAT+GGG 0.591430 3_1:+87122698 None:intergenic
TCCCCAGGTTTCTACCTCTG+TGG 0.593813 3_1:-87122748 Msa0384060:CDS
CGATTGAGGTTGGTGTAAGT+GGG 0.594949 3_1:+87122606 None:intergenic
CCAACTTGGTTCCTTACCCT+AGG 0.596446 3_1:-87122338 Msa0384060:CDS
GAAGAGTTGACGGTAAGCAC+CGG 0.597156 3_1:+87123134 None:intergenic
CAACCACAGAGGTAGAAACC+TGG 0.597626 3_1:+87122745 None:intergenic
GTATGGTTAGGAATTAACTA+GGG 0.599143 3_1:+87123692 None:intergenic
AGATCTACGAAGACGGCGCG+TGG 0.600243 3_1:+87123186 None:intergenic
AAGGCAGTAAAGTTCCCAGC+AGG 0.601634 3_1:+87123438 None:intergenic
GGGAAAATTTGAATGAACAA+AGG 0.602244 3_1:+87123522 None:intergenic
TTGTTGATCTATGCCTCGAT+AGG 0.603776 3_1:-87122929 Msa0384060:CDS
AAGCTAGCAGATAACTGTAC+CGG 0.604721 3_1:-87122900 Msa0384060:CDS
GACTTCTCTGTTCTCCTCAA+CGG 0.605252 3_1:-87120890 Msa0384060:three_prime_UTR
GACTTCTCTGTTCTCCTCAA+CGG 0.605252 3_1:-87121180 Msa0384060:three_prime_UTR
CCTCCAACTGTTGTTCCTGG+TGG 0.605513 3_1:-87122033 Msa0384060:CDS
TGGATAACACAATCTGCCAA+TGG 0.606869 3_1:+87121526 None:intergenic
TTGGTGTTCAATGCTGTGGG+TGG 0.611760 3_1:-87122864 Msa0384060:CDS
GCCGCCAACAACTTCGCCCG+TGG 0.616675 3_1:-87123078 Msa0384060:CDS
GATAACTGTACCGGTCTGCA+AGG 0.617527 3_1:-87122891 Msa0384060:CDS
AGATGATGTTGATGGAGATG+AGG 0.621023 3_1:-87121782 Msa0384060:CDS
GGATCTTGCTGCTCTCGAGA+AGG 0.621052 3_1:-87121839 Msa0384060:CDS
GCTAAGTGTGACCCTCGCCA+TGG 0.621505 3_1:-87122201 Msa0384060:CDS
ATCCCAATGTATGTCCGTTG+AGG 0.628553 3_1:+87121166 None:intergenic
AGAGATAACAGGTGCGTACG+AGG 0.631288 3_1:+87122299 None:intergenic
ACTGCAGCATTCACGTCCTT+AGG 0.632837 3_1:+87122135 None:intergenic
CCTAGGGTAAGGAACCAAGT+TGG 0.636144 3_1:+87122338 None:intergenic
CTAGCTTTCGGATCCTATCG+AGG 0.641945 3_1:+87122916 None:intergenic
TGCTCCATCAAACCTCAAAG+AGG 0.642331 3_1:+87122389 None:intergenic
GAAGAATGGAAATGAAGGGG+AGG 0.642394 3_1:+87123625 None:intergenic
CGTACTGGTATAATGACCAC+GGG 0.644337 3_1:+87123062 None:intergenic
GAAAATCCCAATGTCCGTTG+AGG 0.647375 3_1:+87120876 None:intergenic
GGTCAAGCCGGTATCCAGGT+CGG 0.648566 3_1:-87123466 Msa0384060:CDS
GAAGAAGAATGGAAATGAAG+GGG 0.649067 3_1:+87123622 None:intergenic
CACCCTGAACAACTCATCAG+CGG 0.650288 3_1:-87123111 Msa0384060:CDS
TGTCCAACTGGGTTCAAGTG+CGG 0.653024 3_1:-87122069 Msa0384060:CDS
CAACATCAGTGTGCTCAAGG+AGG 0.655233 3_1:+87122691 None:intergenic
TTGCAACCATCAAGACCAAG+AGG 0.655579 3_1:-87122113 Msa0384060:CDS
TGGTTCCAGATCTACGAAGA+CGG 0.658526 3_1:+87123179 None:intergenic
CGCTGATGAGTTGTTCAGGG+TGG 0.660350 3_1:+87123112 None:intergenic
CAAACCTCAAAGAGGCAGTG+AGG 0.663855 3_1:+87122397 None:intergenic
ACGTACTGGTATAATGACCA+CGG 0.670676 3_1:+87123061 None:intergenic
ACCTTGGCAAGATCACCACC+AGG 0.672683 3_1:+87122018 None:intergenic
GGATACCGGCTTGACCAATG+TGG 0.673011 3_1:+87123473 None:intergenic
GAGTGCATTTCAATCCACAT+TGG 0.673256 3_1:-87123487 Msa0384060:CDS
AAGTATATACCTGAGAGACA+AGG 0.681840 3_1:+87122583 None:intergenic
TCTCGAGAAGGATTATGAGG+AGG 0.693923 3_1:-87121827 Msa0384060:CDS
ACCACAGAGGTAGAAACCTG+GGG 0.712460 3_1:+87122747 None:intergenic
GCTTGTTGTTTGATGTACCG+CGG 0.713100 3_1:-87122168 Msa0384060:CDS
GGAAGAAGGTGAGTTCTCTG+AGG 0.713464 3_1:-87121869 Msa0384060:CDS
GTTGTAGGGTTCAACCACAG+AGG 0.742914 3_1:+87122734 None:intergenic
CCTTAGGCACAACATCACCG+CGG 0.844586 3_1:+87122151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAGTTTTAAACTTTCAT+TGG - chr3_1:87122898-87122917 Msa0384060:CDS 15.0%
!! TATTAGAAATTTAATCTTTG+TGG - chr3_1:87123256-87123275 Msa0384060:CDS 15.0%
!! ATTAGAAATTTAATCTTTGT+GGG - chr3_1:87123257-87123276 Msa0384060:CDS 15.0%
!! TATTAGAAATTTAATCTTTG+TGG - chr3_1:87123256-87123275 Msa0384060:CDS 15.0%
!! ATTAGAAATTTAATCTTTGT+GGG - chr3_1:87123257-87123276 Msa0384060:CDS 15.0%
!!! TAAATTTGAAATGTATGGTT+AGG + chr3_1:87120800-87120819 None:intergenic 20.0%
!!! GAAACTAAATTTGAAATGTA+TGG + chr3_1:87120805-87120824 None:intergenic 20.0%
!!! AGATCTAGAATTAAAAAAAG+TGG + chr3_1:87121104-87121123 None:intergenic 20.0%
!! TAATTCTAGATCTCAAATTT+AGG - chr3_1:87121111-87121130 Msa0384060:three_prime_UTR 20.0%
!! AATTCTAGATCTCAAATTTA+GGG - chr3_1:87121112-87121131 Msa0384060:three_prime_UTR 20.0%
!!! CTTTAATCTACATTTTGTTT+CGG - chr3_1:87122842-87122861 Msa0384060:CDS 20.0%
!! TTGAATTTTGTGAAGAAGAA+TGG + chr3_1:87120869-87120888 None:intergenic 25.0%
! TCTTCTTCACAAAATTCAAA+AGG - chr3_1:87120870-87120889 Msa0384060:three_prime_UTR 25.0%
! CTTCTTCACAAAATTCAAAA+GGG - chr3_1:87120871-87120890 Msa0384060:three_prime_UTR 25.0%
! TTTCAATTGATTAATCGATG+CGG - chr3_1:87121162-87121181 Msa0384060:three_prime_UTR 25.0%
! TTATGGTAAAAAATCCAAGT+TGG - chr3_1:87121687-87121706 Msa0384060:three_prime_UTR 25.0%
! TATGGTAAAAAATCCAAGTT+GGG - chr3_1:87121688-87121707 Msa0384060:three_prime_UTR 25.0%
! TAACAACCAAATATAGAGAA+TGG - chr3_1:87121916-87121935 Msa0384060:CDS 25.0%
! GAATTATGTAGCAAATATTG+AGG - chr3_1:87121965-87121984 Msa0384060:CDS 25.0%
!!! TGCTGTTTCATTTTAATTTC+TGG - chr3_1:87122758-87122777 Msa0384060:CDS 25.0%
!!! GCTGTTTCATTTTAATTTCT+GGG - chr3_1:87122759-87122778 Msa0384060:CDS 25.0%
! TGTTCATTACTATGTTTCAT+TGG - chr3_1:87123056-87123075 Msa0384060:intron 25.0%
!! GCTTTTTAATGTTTTCTTTG+TGG - chr3_1:87123184-87123203 Msa0384060:CDS 25.0%
!! GCTTTTTAATGTTTTCTTTG+TGG - chr3_1:87123184-87123203 Msa0384060:CDS 25.0%
GTATGGTTAGGAATTAACTA+GGG + chr3_1:87120788-87120807 None:intergenic 30.0%
TGTATGGTTAGGAATTAACT+AGG + chr3_1:87120789-87120808 None:intergenic 30.0%
TGAAGAAGAATGGAAATGAA+GGG + chr3_1:87120859-87120878 None:intergenic 30.0%
GAAGAAAGAAGAAGAAGAAA+CGG + chr3_1:87120927-87120946 None:intergenic 30.0%
GGGAAAATTTGAATGAACAA+AGG + chr3_1:87120958-87120977 None:intergenic 30.0%
GGCATTCAGGTAATTAATTA+GGG - chr3_1:87121068-87121087 Msa0384060:three_prime_UTR 30.0%
CAAGATCCATTCTCTATATT+TGG + chr3_1:87121925-87121944 None:intergenic 30.0%
!!! TTTGTTTGTTGTGCTTTTAC+AGG - chr3_1:87122047-87122066 Msa0384060:CDS 30.0%
ATCAAACTTATGATCAATCC+TGG + chr3_1:87122538-87122557 None:intergenic 30.0%
! TGGATGAACGTTTTCTTTAT+TGG - chr3_1:87122918-87122937 Msa0384060:CDS 30.0%
! AACGTTTTCTTTATTGGATG+TGG - chr3_1:87122924-87122943 Msa0384060:CDS 30.0%
! AACTATTTTCACCTTAGCAT+TGG - chr3_1:87122982-87123001 Msa0384060:intron 30.0%
! ACTATTTTCACCTTAGCATT+GGG - chr3_1:87122983-87123002 Msa0384060:intron 30.0%
! TTATAAGTGTTTTGTGAGCA+GGG - chr3_1:87123228-87123247 Msa0384060:CDS 30.0%
TCAACAATGACTTGAAAACT+AGG - chr3_1:87123399-87123418 Msa0384060:intron 30.0%
! TTATAAGTGTTTTGTGAGCA+GGG - chr3_1:87123228-87123247 Msa0384060:CDS 30.0%
TCAACAATGACTTGAAAACT+AGG - chr3_1:87123399-87123418 Msa0384060:intron 30.0%
GAAGAAGAATGGAAATGAAG+GGG + chr3_1:87120858-87120877 None:intergenic 35.0%
GTGAAGAAGAATGGAAATGA+AGG + chr3_1:87120860-87120879 None:intergenic 35.0%
! AATGCACTCTCTCATTTTCT+CGG + chr3_1:87120979-87120998 None:intergenic 35.0%
CGGCATTCAGGTAATTAATT+AGG - chr3_1:87121067-87121086 Msa0384060:three_prime_UTR 35.0%
ATTGAATGACGAAAACGTAC+TGG + chr3_1:87121433-87121452 None:intergenic 35.0%
! TATGATTTGTGTCCTTCAGT+TGG - chr3_1:87121517-87121536 Msa0384060:three_prime_UTR 35.0%
! ATGATTTGTGTCCTTCAGTT+GGG - chr3_1:87121518-87121537 Msa0384060:three_prime_UTR 35.0%
!! TACAGTTATCTGCTAGCTTT+CGG + chr3_1:87121576-87121595 None:intergenic 35.0%
! GAGCGTTTATCTGTTGATTA+TGG - chr3_1:87121670-87121689 Msa0384060:three_prime_UTR 35.0%
ATAAACGGTAAAACCCAACT+TGG + chr3_1:87121704-87121723 None:intergenic 35.0%
AAGCTATCTATGACATATGC+AGG - chr3_1:87121827-87121846 Msa0384060:CDS 35.0%
AAGTATATACCTGAGAGACA+AGG + chr3_1:87121897-87121916 None:intergenic 35.0%
GATCTTGAAATGTTTGCGTT+TGG - chr3_1:87121938-87121957 Msa0384060:CDS 35.0%
AACAGAGTTTCAAACCAACT+TGG - chr3_1:87122125-87122144 Msa0384060:CDS 35.0%
AAAGCATGAAATGGATCCTA+GGG + chr3_1:87122158-87122177 None:intergenic 35.0%
! TTTTGAACCTTCTTCCATGA+TGG - chr3_1:87122254-87122273 Msa0384060:CDS 35.0%
! AACAAGCCATGTATTTTCCA+TGG + chr3_1:87122296-87122315 None:intergenic 35.0%
ACACCAATCAACAAACTGAA+TGG + chr3_1:87122391-87122410 None:intergenic 35.0%
GTGAATCTCTCTTTCTTTGT+TGG - chr3_1:87122864-87122883 Msa0384060:CDS 35.0%
TATTGGATGTGGATTTCCAT+TGG - chr3_1:87122935-87122954 Msa0384060:CDS 35.0%
GTGAAAATAGTTGCATGAGT+TGG + chr3_1:87122974-87122993 None:intergenic 35.0%
TATAGTAAAGCCCAATGCTA+AGG + chr3_1:87122996-87123015 None:intergenic 35.0%
TTACTATGTTTCATTGGTGC+AGG - chr3_1:87123062-87123081 Msa0384060:intron 35.0%
! GTTATAAGTGTTTTGTGAGC+AGG - chr3_1:87123227-87123246 Msa0384060:CDS 35.0%
! GTTATAAGTGTTTTGTGAGC+AGG - chr3_1:87123227-87123246 Msa0384060:CDS 35.0%
AGAAGAAGAAGAAACGGAAG+AGG + chr3_1:87120921-87120940 None:intergenic 40.0%
! ATGCACTCTCTCATTTTCTC+GGG + chr3_1:87120978-87120997 None:intergenic 40.0%
GAGTGCATTTCAATCCACAT+TGG - chr3_1:87120990-87121009 Msa0384060:three_prime_UTR 40.0%
GAACTTTACTGCCTTGAACA+CGG - chr3_1:87121047-87121066 Msa0384060:three_prime_UTR 40.0%
! ACGTACTGGTATAATGACCA+CGG + chr3_1:87121419-87121438 None:intergenic 40.0%
TTGTTGATCTATGCCTCGAT+AGG - chr3_1:87121548-87121567 Msa0384060:three_prime_UTR 40.0%
AAGCTAGCAGATAACTGTAC+CGG - chr3_1:87121577-87121596 Msa0384060:three_prime_UTR 40.0%
!! TTTCTTGGTGTTCAATGCTG+TGG - chr3_1:87121609-87121628 Msa0384060:three_prime_UTR 40.0%
!! TTCTTGGTGTTCAATGCTGT+GGG - chr3_1:87121610-87121629 Msa0384060:three_prime_UTR 40.0%
GTTGAAAGGACACTGTTGTA+GGG + chr3_1:87121760-87121779 None:intergenic 40.0%
ATGAAATGGATCCTAGGGTA+AGG + chr3_1:87122153-87122172 None:intergenic 40.0%
! GAAAGCATGAAATGGATCCT+AGG + chr3_1:87122159-87122178 None:intergenic 40.0%
!! AAAAGCACTGTTGGTGATCT+CGG + chr3_1:87122238-87122257 None:intergenic 40.0%
!! AGAAGGTTCAAAAGCACTGT+TGG + chr3_1:87122247-87122266 None:intergenic 40.0%
AACAAACTGAATGGTCCTCT+TGG + chr3_1:87122382-87122401 None:intergenic 40.0%
!! GGACCATTCAGTTTGTTGAT+TGG - chr3_1:87122385-87122404 Msa0384060:CDS 40.0%
! TTTGTTGATTGGTGTCCAAC+TGG - chr3_1:87122396-87122415 Msa0384060:CDS 40.0%
! TTGTTGATTGGTGTCCAACT+GGG - chr3_1:87122397-87122416 Msa0384060:CDS 40.0%
!! GCTTTTGTGCATTGGTATGT+TGG - chr3_1:87122576-87122595 Msa0384060:intron 40.0%
! AGATGATGTTGATGGAGATG+AGG - chr3_1:87122695-87122714 Msa0384060:CDS 40.0%
TGAGGATTACTAGATCTTGC+AGG - chr3_1:87122713-87122732 Msa0384060:CDS 40.0%
TGGATAACACAATCTGCCAA+TGG + chr3_1:87122954-87122973 None:intergenic 40.0%
TTCATTGGTGCAGGATTGTT+TGG - chr3_1:87123071-87123090 Msa0384060:CDS 40.0%
! GGACATACATTGGGATTTTC+TGG - chr3_1:87123318-87123337 Msa0384060:intron 40.0%
TATCAACAGTCTGGAGATTG+TGG + chr3_1:87123354-87123373 None:intergenic 40.0%
TATCAACAGTCTGGAGATTG+TGG + chr3_1:87123354-87123373 None:intergenic 40.0%
!! TAACTAGGGTTAGCTCACCT+TGG + chr3_1:87120774-87120793 None:intergenic 45.0%
GAAGAATGGAAATGAAGGGG+AGG + chr3_1:87120855-87120874 None:intergenic 45.0%
AAGAAGAAACGGAAGAGGAG+CGG + chr3_1:87120916-87120935 None:intergenic 45.0%
TCAATCCACATTGGTCAAGC+CGG - chr3_1:87120999-87121018 Msa0384060:three_prime_UTR 45.0%
TTACCTGAATGCCGTGTTCA+AGG + chr3_1:87121061-87121080 None:intergenic 45.0%
!!! GGTGTTGTTTTTCAGCCTGA+TGG - chr3_1:87121183-87121202 Msa0384060:three_prime_UTR 45.0%
AACACGTTCTTCAGCGAAAC+CGG - chr3_1:87121252-87121271 Msa0384060:three_prime_UTR 45.0%
TGGTTCCAGATCTACGAAGA+CGG + chr3_1:87121301-87121320 None:intergenic 45.0%
! GGTTCTGACTTCGTCAATGA+CGG + chr3_1:87121325-87121344 None:intergenic 45.0%
GTCATTGACGAAGTCAGAAC+CGG - chr3_1:87121324-87121343 Msa0384060:three_prime_UTR 45.0%
! CGTACTGGTATAATGACCAC+GGG + chr3_1:87121418-87121437 None:intergenic 45.0%
TTTGTGTCCTTCAGTTGGGA+AGG - chr3_1:87121522-87121541 Msa0384060:three_prime_UTR 45.0%
ACAATCTCCTTCCCAACTGA+AGG + chr3_1:87121532-87121551 None:intergenic 45.0%
AAGAGAACCCAAACCAGATC+CGG + chr3_1:87121644-87121663 None:intergenic 45.0%
! TGGTTTGGGTTCTCTTCTGT+TGG - chr3_1:87121648-87121667 Msa0384060:three_prime_UTR 45.0%
AACCTGGGGAGATGGATAAA+CGG + chr3_1:87121719-87121738 None:intergenic 45.0%
AACCACAGAGGTAGAAACCT+GGG + chr3_1:87121734-87121753 None:intergenic 45.0%
GGTTGAAAGGACACTGTTGT+AGG + chr3_1:87121761-87121780 None:intergenic 45.0%
AACATCAGTGTGCTCAAGGA+GGG + chr3_1:87121788-87121807 None:intergenic 45.0%
!! CGATTGAGGTTGGTGTAAGT+GGG + chr3_1:87121874-87121893 None:intergenic 45.0%
AAACCTCAAAGAGGCAGTGA+GGG + chr3_1:87122082-87122101 None:intergenic 45.0%
!! ACTGCCTCTTTGAGGTTTGA+TGG - chr3_1:87122084-87122103 Msa0384060:CDS 45.0%
TGCTCCATCAAACCTCAAAG+AGG + chr3_1:87122091-87122110 None:intergenic 45.0%
! CGTACGAGGAAAGCATGAAA+TGG + chr3_1:87122167-87122186 None:intergenic 45.0%
ACCTGTTATCTCTGCTGAGA+AGG - chr3_1:87122188-87122207 Msa0384060:CDS 45.0%
CACTTAGCCATCATGGAAGA+AGG + chr3_1:87122264-87122283 None:intergenic 45.0%
! CCATGTATTTTCCATGGCGA+GGG + chr3_1:87122290-87122309 None:intergenic 45.0%
!! GCTTGTTGTTTGATGTACCG+CGG - chr3_1:87122309-87122328 Msa0384060:CDS 45.0%
TTGCAACCATCAAGACCAAG+AGG - chr3_1:87122364-87122383 Msa0384060:CDS 45.0%
!! AATGGTCCTCTTGGTCTTGA+TGG + chr3_1:87122373-87122392 None:intergenic 45.0%
TGATCTTGCCAAGGTCCAAA+GGG - chr3_1:87122467-87122486 Msa0384060:intron 45.0%
! TAACTCTACCAGTGTTGCTG+AGG - chr3_1:87122506-87122525 Msa0384060:intron 45.0%
! TGTGCATTGGTATGTTGGTG+AGG - chr3_1:87122581-87122600 Msa0384060:intron 45.0%
! GTGCATTGGTATGTTGGTGA+GGG - chr3_1:87122582-87122601 Msa0384060:intron 45.0%
! TTGGTATGTTGGTGAGGGTA+TGG - chr3_1:87122587-87122606 Msa0384060:intron 45.0%
TGCTCTCGAGAAGGATTATG+AGG - chr3_1:87122647-87122666 Msa0384060:CDS 45.0%
TCTCGAGAAGGATTATGAGG+AGG - chr3_1:87122650-87122669 Msa0384060:CDS 45.0%
GAGAAGGATTATGAGGAGGT+TGG - chr3_1:87122654-87122673 Msa0384060:CDS 45.0%
!! GGTGATGGAGATGATGTTGA+TGG - chr3_1:87122687-87122706 Msa0384060:CDS 45.0%
GACTTCTCTGTTCTCCTCAA+CGG - chr3_1:87123297-87123316 Msa0384060:intron 45.0%
TCTCCTCAACGGACATACAT+TGG - chr3_1:87123308-87123327 Msa0384060:intron 45.0%
CTCCTCAACGGACATACATT+GGG - chr3_1:87123309-87123328 Msa0384060:intron 45.0%
ATCCCAATGTATGTCCGTTG+AGG + chr3_1:87123314-87123333 None:intergenic 45.0%
ACACAGACGTATCAACAGTC+TGG + chr3_1:87123363-87123382 None:intergenic 45.0%
GACTTCTCTGTTCTCCTCAA+CGG - chr3_1:87123297-87123316 Msa0384060:intron 45.0%
TGTTCTCCTCAACGGACATT+GGG - chr3_1:87123595-87123614 Msa0384060:five_prime_UTR 45.0%
GAAAATCCCAATGTCCGTTG+AGG + chr3_1:87123604-87123623 None:intergenic 45.0%
! CAACGGACATTGGGATTTTC+TGG - chr3_1:87123604-87123623 Msa0384060:five_prime_UTR 45.0%
ACACAGACGTATCAACAGTC+TGG + chr3_1:87123363-87123382 None:intergenic 45.0%
AAGGCAGTAAAGTTCCCAGC+AGG + chr3_1:87121042-87121061 None:intergenic 50.0%
TGCATCATCTCCTCCTCCAA+CGG + chr3_1:87121229-87121248 None:intergenic 50.0%
CTGACTTCGTCAATGACGGT+TGG + chr3_1:87121321-87121340 None:intergenic 50.0%
GAAGAGTTGACGGTAAGCAC+CGG + chr3_1:87121346-87121365 None:intergenic 50.0%
GTTCAGGGTGGAAGAGTTGA+CGG + chr3_1:87121356-87121375 None:intergenic 50.0%
CACCCTGAACAACTCATCAG+CGG - chr3_1:87121366-87121385 Msa0384060:three_prime_UTR 50.0%
TGCCGCTGATGAGTTGTTCA+GGG + chr3_1:87121371-87121390 None:intergenic 50.0%
TTGCCGCTGATGAGTTGTTC+AGG + chr3_1:87121372-87121391 None:intergenic 50.0%
! CTAGCTTTCGGATCCTATCG+AGG + chr3_1:87121564-87121583 None:intergenic 50.0%
! GATAACTGTACCGGTCTGCA+AGG - chr3_1:87121586-87121605 Msa0384060:three_prime_UTR 50.0%
TACCGGTCTGCAAGGTTTCT+TGG - chr3_1:87121594-87121613 Msa0384060:three_prime_UTR 50.0%
CACCAAGAAACCTTGCAGAC+CGG + chr3_1:87121599-87121618 None:intergenic 50.0%
! TTGGTGTTCAATGCTGTGGG+TGG - chr3_1:87121613-87121632 Msa0384060:three_prime_UTR 50.0%
TACCGTTTATCCATCTCCCC+AGG - chr3_1:87121714-87121733 Msa0384060:three_prime_UTR 50.0%
ACCACAGAGGTAGAAACCTG+GGG + chr3_1:87121733-87121752 None:intergenic 50.0%
CAACCACAGAGGTAGAAACC+TGG + chr3_1:87121735-87121754 None:intergenic 50.0%
GTTGTAGGGTTCAACCACAG+AGG + chr3_1:87121746-87121765 None:intergenic 50.0%
!! CAAGGAGGGAATGGGTTGAA+AGG + chr3_1:87121774-87121793 None:intergenic 50.0%
AGTGTGCTCAAGGAGGGAAT+GGG + chr3_1:87121782-87121801 None:intergenic 50.0%
CAACATCAGTGTGCTCAAGG+AGG + chr3_1:87121789-87121808 None:intergenic 50.0%
CAGCAACATCAGTGTGCTCA+AGG + chr3_1:87121792-87121811 None:intergenic 50.0%
!! GCGATTGAGGTTGGTGTAAG+TGG + chr3_1:87121875-87121894 None:intergenic 50.0%
AGAGACAAGGCGATTGAGGT+TGG + chr3_1:87121884-87121903 None:intergenic 50.0%
CAAACCTCAAAGAGGCAGTG+AGG + chr3_1:87122083-87122102 None:intergenic 50.0%
CCTAGGGTAAGGAACCAAGT+TGG + chr3_1:87122142-87122161 None:intergenic 50.0%
CCAACTTGGTTCCTTACCCT+AGG - chr3_1:87122139-87122158 Msa0384060:CDS 50.0%
AGAGATAACAGGTGCGTACG+AGG + chr3_1:87122181-87122200 None:intergenic 50.0%
GCCTTCTCAGCAGAGATAAC+AGG + chr3_1:87122192-87122211 None:intergenic 50.0%
CGGCAACAGAAAGCTGTTCA+TGG + chr3_1:87122218-87122237 None:intergenic 50.0%
AGGGTCACACTTAGCCATCA+TGG + chr3_1:87122271-87122290 None:intergenic 50.0%
CCCTCGCCATGGAAAATACA+TGG - chr3_1:87122287-87122306 Msa0384060:CDS 50.0%
! GCCATGTATTTTCCATGGCG+AGG + chr3_1:87122291-87122310 None:intergenic 50.0%
ACTGCAGCATTCACGTCCTT+AGG + chr3_1:87122345-87122364 None:intergenic 50.0%
TGTCCAACTGGGTTCAAGTG+CGG - chr3_1:87122408-87122427 Msa0384060:CDS 50.0%
ATACCGCACTTGAACCCAGT+TGG + chr3_1:87122414-87122433 None:intergenic 50.0%
TCACCACCAGGAACAACAGT+TGG + chr3_1:87122450-87122469 None:intergenic 50.0%
GTGATCTTGCCAAGGTCCAA+AGG - chr3_1:87122466-87122485 Msa0384060:intron 50.0%
AGATCATGCACACAGCCCTT+TGG + chr3_1:87122485-87122504 None:intergenic 50.0%
GGAAAACACCTCAGCAACAC+TGG + chr3_1:87122517-87122536 None:intergenic 50.0%
!! GTGTTGCTGAGGTGTTTTCC+AGG - chr3_1:87122517-87122536 Msa0384060:intron 50.0%
! CCAATGCACAAAAGCACGCT+TGG + chr3_1:87122571-87122590 None:intergenic 50.0%
! CCAAGCGTGCTTTTGTGCAT+TGG - chr3_1:87122568-87122587 Msa0384060:intron 50.0%
! GTTGGTGAGGGTATGGAAGA+AGG - chr3_1:87122594-87122613 Msa0384060:CDS 50.0%
GGAAGAAGGTGAGTTCTCTG+AGG - chr3_1:87122608-87122627 Msa0384060:CDS 50.0%
CTGTTCTCCTCAACGGACAT+TGG - chr3_1:87123304-87123323 Msa0384060:intron 50.0%
!! GGATACCGGCTTGACCAATG+TGG + chr3_1:87121007-87121026 None:intergenic 55.0%
CATTGGTCAAGCCGGTATCC+AGG - chr3_1:87121007-87121026 Msa0384060:three_prime_UTR 55.0%
GGCATTTCCGACCTGGATAC+CGG + chr3_1:87121021-87121040 None:intergenic 55.0%
CTGCCTTGAACACGGCATTC+AGG - chr3_1:87121055-87121074 Msa0384060:three_prime_UTR 55.0%
ATGCCTGGAGACAAGACCGT+TGG - chr3_1:87121210-87121229 Msa0384060:three_prime_UTR 55.0%
TTCTTCAGCGAAACCGGTGC+CGG - chr3_1:87121258-87121277 Msa0384060:three_prime_UTR 55.0%
TGGAACATGCTTTCCGGCAC+CGG + chr3_1:87121274-87121293 None:intergenic 55.0%
CGCTGATGAGTTGTTCAGGG+TGG + chr3_1:87121368-87121387 None:intergenic 55.0%
ATGACCACGGGCGAAGTTGT+TGG + chr3_1:87121406-87121425 None:intergenic 55.0%
GTGTTCAATGCTGTGGGTGG+TGG - chr3_1:87121616-87121635 Msa0384060:three_prime_UTR 55.0%
!! AATGCTGTGGGTGGTGGAAC+CGG - chr3_1:87121622-87121641 Msa0384060:three_prime_UTR 55.0%
TGGTGGAACCGGATCTGGTT+TGG - chr3_1:87121633-87121652 Msa0384060:three_prime_UTR 55.0%
! GGTGGAACCGGATCTGGTTT+GGG - chr3_1:87121634-87121653 Msa0384060:three_prime_UTR 55.0%
GAGGTAGAAACCTGGGGAGA+TGG + chr3_1:87121727-87121746 None:intergenic 55.0%
TCCCCAGGTTTCTACCTCTG+TGG - chr3_1:87121729-87121748 Msa0384060:three_prime_UTR 55.0%
CAGTGTGCTCAAGGAGGGAA+TGG + chr3_1:87121783-87121802 None:intergenic 55.0%
CCTGAGAGACAAGGCGATTG+AGG + chr3_1:87121888-87121907 None:intergenic 55.0%
CCTCAATCGCCTTGTCTCTC+AGG - chr3_1:87121885-87121904 Msa0384060:CDS 55.0%
CATCCCTCACTGCCTCTTTG+AGG - chr3_1:87122076-87122095 Msa0384060:CDS 55.0%
CCTTAGGCACAACATCACCG+CGG + chr3_1:87122329-87122348 None:intergenic 55.0%
CAGGAACAACAGTTGGAGGC+TGG + chr3_1:87122443-87122462 None:intergenic 55.0%
CAGCCTCCAACTGTTGTTCC+TGG - chr3_1:87122441-87122460 Msa0384060:intron 55.0%
CCACCAGGAACAACAGTTGG+AGG + chr3_1:87122447-87122466 None:intergenic 55.0%
CCTCCAACTGTTGTTCCTGG+TGG - chr3_1:87122444-87122463 Msa0384060:intron 55.0%
! TCCTGGTGGTGATCTTGCCA+AGG - chr3_1:87122458-87122477 Msa0384060:intron 55.0%
ACCTTGGCAAGATCACCACC+AGG + chr3_1:87122462-87122481 None:intergenic 55.0%
!! TGAGTTCTCTGAGGCTCGTG+AGG - chr3_1:87122617-87122636 Msa0384060:CDS 55.0%
GGATCTTGCTGCTCTCGAGA+AGG - chr3_1:87122638-87122657 Msa0384060:CDS 55.0%
!! GTTGGTGCTGAGTCTGGTGA+TGG - chr3_1:87122672-87122691 Msa0384060:CDS 55.0%
GGTCAAGCCGGTATCCAGGT+CGG - chr3_1:87121011-87121030 Msa0384060:three_prime_UTR 60.0%
TCCAGGTCGGAAATGCCTGC+TGG - chr3_1:87121024-87121043 Msa0384060:three_prime_UTR 60.0%
CCAGGTCGGAAATGCCTGCT+GGG - chr3_1:87121025-87121044 Msa0384060:three_prime_UTR 60.0%
TCTCCAGGCATCTGGCCATC+AGG + chr3_1:87121201-87121220 None:intergenic 60.0%
! CGGTCTTGTCTCCAGGCATC+TGG + chr3_1:87121209-87121228 None:intergenic 60.0%
! CCTCCAACGGTCTTGTCTCC+AGG + chr3_1:87121216-87121235 None:intergenic 60.0%
CCTGGAGACAAGACCGTTGG+AGG - chr3_1:87121213-87121232 Msa0384060:three_prime_UTR 60.0%
GGAGACAAGACCGTTGGAGG+AGG - chr3_1:87121216-87121235 Msa0384060:three_prime_UTR 60.0%
GGCGCGTGGAACATGCTTTC+CGG + chr3_1:87121280-87121299 None:intergenic 60.0%
AGATCTACGAAGACGGCGCG+TGG + chr3_1:87121294-87121313 None:intergenic 60.0%
ACGCGCCGTCTTCGTAGATC+TGG - chr3_1:87121293-87121312 Msa0384060:three_prime_UTR 60.0%
ACCACGGGCGAAGTTGTTGG+CGG + chr3_1:87121403-87121422 None:intergenic 60.0%
GCTAAGTGTGACCCTCGCCA+TGG - chr3_1:87122276-87122295 Msa0384060:CDS 60.0%
CCGCGGTGATGTTGTGCCTA+AGG - chr3_1:87122326-87122345 Msa0384060:CDS 60.0%
GCACACAGCCCTTTGGACCT+TGG + chr3_1:87122478-87122497 None:intergenic 60.0%
!! GAGGAGGTTGGTGCTGAGTC+TGG - chr3_1:87122666-87122685 Msa0384060:CDS 60.0%
CCCAGCAGGCATTTCCGACC+TGG + chr3_1:87121028-87121047 None:intergenic 65.0%
CAGCCTGATGGCCAGATGCC+TGG - chr3_1:87121195-87121214 Msa0384060:three_prime_UTR 65.0%
!! GTGGGTGGTGGAACCGGATC+TGG - chr3_1:87121628-87121647 Msa0384060:three_prime_UTR 65.0%
GCCGCCAACAACTTCGCCCG+TGG - chr3_1:87121399-87121418 Msa0384060:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87120771 87123728 87120771 ID=Msa0384060;Name=Msa0384060
chr3_1 mRNA 87120771 87123728 87120771 ID=Msa0384060-mRNA-1;Parent=Msa0384060;Name=Msa0384060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=213|1|1|1|1|1|4|1003|451
chr3_1 exon 87120771 87122430 87120771 ID=Msa0384060-mRNA-1:exon:23238;Parent=Msa0384060-mRNA-1
chr3_1 exon 87122593 87122963 87122593 ID=Msa0384060-mRNA-1:exon:23237;Parent=Msa0384060-mRNA-1
chr3_1 exon 87123067 87123301 87123067 ID=Msa0384060-mRNA-1:exon:23236;Parent=Msa0384060-mRNA-1
chr3_1 exon 87123423 87123728 87123423 ID=Msa0384060-mRNA-1:exon:23235;Parent=Msa0384060-mRNA-1
chr3_1 five_prime_UTR 87123516 87123728 87123516 ID=Msa0384060-mRNA-1:five_prime_utr;Parent=Msa0384060-mRNA-1
chr3_1 CDS 87123423 87123515 87123423 ID=Msa0384060-mRNA-1:cds;Parent=Msa0384060-mRNA-1
chr3_1 CDS 87123067 87123301 87123067 ID=Msa0384060-mRNA-1:cds;Parent=Msa0384060-mRNA-1
chr3_1 CDS 87122593 87122963 87122593 ID=Msa0384060-mRNA-1:cds;Parent=Msa0384060-mRNA-1
chr3_1 CDS 87121774 87122430 87121774 ID=Msa0384060-mRNA-1:cds;Parent=Msa0384060-mRNA-1
chr3_1 three_prime_UTR 87120771 87121773 87120771 ID=Msa0384060-mRNA-1:three_prime_utr;Parent=Msa0384060-mRNA-1
Gene Sequence

>Msa0384060

ATGAGAGAGTGCATTTCAATCCACATTGGTCAAGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTTTACTGCCTTGAACACGGCATTCAGCCTGATGGCCAGATGCCTGGAGACAAGACCGTTGGAGGAGGAGATGATGCATTCAACACGTTCTTCAGCGAAACCGGTGCCGGAAAGCATGTTCCACGCGCCGTCTTCGTAGATCTGGAACCAACCGTCATTGACGAAGTCAGAACCGGTGCTTACCGTCAACTCTTCCACCCTGAACAACTCATCAGCGGCAAAGAAGACGCCGCCAACAACTTCGCCCGTGGTCATTATACCATTGGGAAGGAGATTGTTGATCTATGCCTCGATAGGATCCGAAAGCTAGCAGATAACTGTACCGGTCTGCAAGGTTTCTTGGTGTTCAATGCTGTGGGTGGTGGAACCGGATCTGGTTTGGGTTCTCTTCTGTTGGAGCGTTTATCTGTTGATTATGGTAAAAAATCCAAGTTGGGTTTTACCGTTTATCCATCTCCCCAGGTTTCTACCTCTGTGGTTGAACCCTACAACAGTGTCCTTTCAACCCATTCCCTCCTTGAGCACACTGATGTTGCTGTTCTTCTCGACAACGAAGCTATCTATGACATATGCAGGCGTTCTCTTGATATTGAGCGTCCCACTTACACCAACCTCAATCGCCTTGTCTCTCAGGTGATTTCATCCCTCACTGCCTCTTTGAGGTTTGATGGAGCACTGAATGTTGATGTAACAGAGTTTCAAACCAACTTGGTTCCTTACCCTAGGATCCATTTCATGCTTTCCTCGTACGCACCTGTTATCTCTGCTGAGAAGGCTTACCATGAACAGCTTTCTGTTGCCGAGATCACCAACAGTGCTTTTGAACCTTCTTCCATGATGGCTAAGTGTGACCCTCGCCATGGAAAATACATGGCTTGTTGTTTGATGTACCGCGGTGATGTTGTGCCTAAGGACGTGAATGCTGCAGTTGCAACCATCAAGACCAAGAGGACCATTCAGTTTGTTGATTGGTGTCCAACTGGGTTCAAGTGCGGTATCAATTACCAGCCTCCAACTGTTGTTCCTGGTGGTGATCTTGCCAAGGTCCAAAGGGCTGTGTGCATGATCTCTAACTCTACCAGTGTTGCTGAGGTGTTTTCCAGGATTGATCATAAGTTTGATCTTATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTTGGTGAGGGTATGGAAGAAGGTGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCTCTCGAGAAGGATTATGAGGAGGTTGGTGCTGAGTCTGGTGATGGAGATGATGTTGATGGAGATGAGGATTACTAG
Protein sequence

>Msa0384060

MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGDGDDVDGDEDY*