Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478340 | XP_003603670.1 | 100.000 | 451 | 0 | 0 | 1 | 451 | 1 | 451 | 0.0 | 939 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478340 | sp|P46259|TBA1_PEA | 98.894 | 452 | 4 | 1 | 1 | 451 | 1 | 452 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478340 | G7J421 | 100.000 | 451 | 0 | 0 | 1 | 451 | 1 | 451 | 0.0 | 939 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384060 | Msa0478340 | 0.967535 | 2.065446e-127 | -8.615850e-47 |
| Msa0478340 | Msa0522440 | 0.994756 | 6.293157e-210 | -8.615850e-47 |
| Msa0478340 | Msa1041160 | 0.804360 | 2.242828e-49 | -8.615850e-47 |
| Msa0478340 | Msa1204770 | 0.818647 | 1.757486e-52 | -8.615850e-47 |
| Msa0478340 | Msa1304320 | 0.811626 | 6.373820e-51 | -8.615850e-47 |
| Msa0478340 | Msa1329350 | 0.822733 | 2.023034e-53 | -8.615850e-47 |
| Msa0478340 | Msa1329580 | 0.816287 | 5.977987e-52 | -8.615850e-47 |
| Msa0478340 | Msa1362000 | 0.800765 | 1.235948e-48 | -8.615850e-47 |
| Msa0269260 | Msa0478340 | 0.962315 | 9.903807e-121 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478340 | MtrunA17_Chr3g0140821 | 100.000 | 451 | 0 | 0 | 1 | 451 | 1 | 451 | 0.0 | 939 |
| Msa0478340 | MtrunA17_Chr4g0054511 | 97.118 | 451 | 13 | 0 | 1 | 451 | 1 | 451 | 0.0 | 914 |
| Msa0478340 | MtrunA17_Chr1g0206881 | 97.550 | 449 | 11 | 0 | 1 | 449 | 1 | 449 | 0.0 | 914 |
| Msa0478340 | MtrunA17_Chr8g0378821 | 92.874 | 435 | 31 | 0 | 1 | 435 | 1 | 435 | 0.0 | 834 |
| Msa0478340 | MtrunA17_Chr7g0253411 | 91.403 | 442 | 38 | 0 | 1 | 442 | 1 | 442 | 0.0 | 829 |
| Msa0478340 | MtrunA17_Chr6g0461281 | 83.628 | 452 | 69 | 3 | 1 | 451 | 1 | 448 | 0.0 | 774 |
| Msa0478340 | MtrunA17_Chr2g0300491 | 73.719 | 449 | 113 | 2 | 1 | 449 | 1 | 444 | 0.0 | 661 |
| Msa0478340 | MtrunA17_Chr2g0300671 | 74.603 | 441 | 107 | 2 | 1 | 441 | 1 | 436 | 0.0 | 658 |
| Msa0478340 | MtrunA17_Chr4g0051631 | 42.166 | 434 | 241 | 2 | 1 | 434 | 1 | 424 | 8.52e-126 | 372 |
| Msa0478340 | MtrunA17_Chr8g0393021 | 41.372 | 452 | 254 | 3 | 1 | 450 | 1 | 443 | 8.80e-126 | 372 |
| Msa0478340 | MtrunA17_Chr4g0008401 | 42.396 | 434 | 240 | 2 | 1 | 434 | 1 | 424 | 1.40e-124 | 369 |
| Msa0478340 | MtrunA17_Chr4g0008361 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 1.94e-124 | 369 |
| Msa0478340 | MtrunA17_Chr1g0203181 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 4.76e-124 | 368 |
| Msa0478340 | MtrunA17_Chr2g0292921 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 5.15e-124 | 367 |
| Msa0478340 | MtrunA17_Chr7g0255791 | 41.876 | 437 | 238 | 4 | 1 | 434 | 1 | 424 | 1.12e-123 | 367 |
| Msa0478340 | MtrunA17_Chr4g0007371 | 41.514 | 436 | 243 | 3 | 1 | 434 | 1 | 426 | 4.59e-123 | 365 |
| Msa0478340 | MtrunA17_Chr3g0142731 | 40.503 | 437 | 246 | 3 | 1 | 434 | 1 | 426 | 4.59e-123 | 365 |
| Msa0478340 | MtrunA17_Chr8g0386781 | 39.545 | 440 | 256 | 2 | 1 | 440 | 1 | 430 | 3.32e-122 | 363 |
| Msa0478340 | MtrunA17_Chr3g0109241 | 97.101 | 138 | 4 | 0 | 268 | 405 | 1 | 138 | 2.95e-96 | 286 |
| Msa0478340 | MtrunA17_Chr7g0275431 | 31.614 | 446 | 282 | 9 | 2 | 433 | 3 | 439 | 1.01e-76 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478340 | AT4G14960.2 | 97.105 | 449 | 13 | 0 | 1 | 449 | 1 | 449 | 0.0 | 913 |
| Msa0478340 | AT1G50010.1 | 96.882 | 449 | 14 | 0 | 1 | 449 | 1 | 449 | 0.0 | 911 |
| Msa0478340 | AT1G04820.1 | 96.882 | 449 | 14 | 0 | 1 | 449 | 1 | 449 | 0.0 | 911 |
| Msa0478340 | AT5G19780.1 | 93.793 | 435 | 27 | 0 | 1 | 435 | 1 | 435 | 0.0 | 839 |
| Msa0478340 | AT5G19770.1 | 93.793 | 435 | 27 | 0 | 1 | 435 | 1 | 435 | 0.0 | 839 |
| Msa0478340 | AT1G64740.1 | 90.345 | 435 | 42 | 0 | 1 | 435 | 1 | 435 | 0.0 | 813 |
| Msa0478340 | AT4G14960.1 | 94.103 | 407 | 17 | 1 | 1 | 407 | 1 | 400 | 0.0 | 800 |
| Msa0478340 | AT1G75780.1 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 1.61e-126 | 374 |
| Msa0478340 | AT5G62690.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 3.91e-125 | 371 |
| Msa0478340 | AT5G62700.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 3.91e-125 | 371 |
| Msa0478340 | AT1G20010.1 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 1.17e-124 | 370 |
| Msa0478340 | AT2G29550.1 | 41.270 | 441 | 249 | 2 | 1 | 441 | 1 | 431 | 1.89e-124 | 369 |
| Msa0478340 | AT5G12250.1 | 41.876 | 437 | 238 | 4 | 1 | 434 | 1 | 424 | 2.42e-124 | 369 |
| Msa0478340 | AT4G20890.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 5.54e-124 | 368 |
| Msa0478340 | AT5G23860.2 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 7.82e-124 | 368 |
| Msa0478340 | AT5G23860.1 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 7.82e-124 | 368 |
| Msa0478340 | AT5G44340.1 | 41.705 | 434 | 243 | 3 | 1 | 434 | 1 | 424 | 5.16e-122 | 363 |
| Msa0478340 | AT5G05620.1 | 32.287 | 446 | 279 | 9 | 2 | 433 | 3 | 439 | 5.71e-78 | 250 |
| Msa0478340 | AT3G61650.1 | 31.839 | 446 | 281 | 9 | 2 | 433 | 3 | 439 | 1.15e-76 | 247 |
Find 191 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCTTCTTCTTTCTTC+TGG | 0.159413 | 3_3:-82843086 | Msa0478340:five_prime_UTR |
| TCAAACATTTCTTCAACTTT+AGG | 0.184754 | 3_3:-82840558 | Msa0478340:three_prime_UTR |
| CAAACATTTCTTCAACTTTA+GGG | 0.234030 | 3_3:-82840557 | Msa0478340:three_prime_UTR |
| GAGCGTTTATCTGTTGATTA+TGG | 0.257743 | 3_3:-82842344 | Msa0478340:CDS |
| TACCGGTCTGCAAGGTTTCT+TGG | 0.265637 | 3_3:-82842420 | Msa0478340:CDS |
| ACTGCCTCTTTGAGGTTTGA+TGG | 0.279194 | 3_3:-82841931 | Msa0478340:CDS |
| GAAATGATTTAAAACAATAT+TGG | 0.295619 | 3_3:-82840484 | Msa0478340:three_prime_UTR |
| AATGGTCCTCTTGGTCTTGA+TGG | 0.297222 | 3_3:+82841645 | None:intergenic |
| GTGAATCTCTCTTTCTTTGT+TGG | 0.305673 | 3_3:-82841151 | Msa0478340:three_prime_UTR |
| GGCGCGTGGAACATGCTTTC+CGG | 0.314398 | 3_3:+82842737 | None:intergenic |
| CATCCCTCACTGCCTCTTTG+AGG | 0.314555 | 3_3:-82841939 | Msa0478340:CDS |
| CAGCCTCCAACTGTTGTTCC+TGG | 0.314809 | 3_3:-82841574 | Msa0478340:CDS |
| TGGTGGAACCGGATCTGGTT+TGG | 0.315781 | 3_3:-82842381 | Msa0478340:CDS |
| GGTGGAACCGGATCTGGTTT+GGG | 0.317975 | 3_3:-82842380 | Msa0478340:CDS |
| TTTGTTGATTGGTGTCCAAC+TGG | 0.322748 | 3_3:-82841619 | Msa0478340:CDS |
| GAAACTAAATTTGAAATGTA+TGG | 0.336098 | 3_3:+82843211 | None:intergenic |
| TTGCCGCTGATGAGTTGTTC+AGG | 0.339225 | 3_3:+82842645 | None:intergenic |
| TACAGTTATCTGCTAGCTTT+CGG | 0.351362 | 3_3:+82842441 | None:intergenic |
| AACACGTTCTTCAGCGAAAC+CGG | 0.356725 | 3_3:-82842762 | Msa0478340:CDS |
| TTCATTGGTGCAGGATCGTT+TGG | 0.359828 | 3_3:-82840943 | Msa0478340:three_prime_UTR |
| TATTAGAAATTTAATCTTTG+TGG | 0.382619 | 3_3:-82840759 | Msa0478340:three_prime_UTR |
| CCTCAATCGCCTTGTCTCTC+AGG | 0.383066 | 3_3:-82842129 | Msa0478340:intron |
| TAAATTTGAAATGTATGGTT+AGG | 0.390192 | 3_3:+82843216 | None:intergenic |
| CTGCCTTGAACACGGCATTC+AGG | 0.391474 | 3_3:-82842958 | Msa0478340:intron |
| CGGTCTTGTCTCCAGGCATC+TGG | 0.396008 | 3_3:+82842808 | None:intergenic |
| TCTCCAGGCATCTGGCCATC+AGG | 0.405017 | 3_3:+82842816 | None:intergenic |
| TGGTTTGGGTTCTCTTCTGT+TGG | 0.405165 | 3_3:-82842366 | Msa0478340:CDS |
| GAAGAAAGAAGAAGAAGAAA+CGG | 0.413332 | 3_3:+82843089 | None:intergenic |
| GCCTTCTCAGCAGAGATAAC+AGG | 0.413340 | 3_3:+82841826 | None:intergenic |
| CAGCCTGATGGCCAGATGCC+TGG | 0.419485 | 3_3:-82842819 | Msa0478340:CDS |
| TCTTCTTCACAAAATTCAAA+AGG | 0.419881 | 3_3:-82843143 | Msa0478340:five_prime_UTR |
| CCTCCAACGGTCTTGTCTCC+AGG | 0.420149 | 3_3:+82842801 | None:intergenic |
| GTGGGTGGTGGAACCGGATC+TGG | 0.423776 | 3_3:-82842386 | Msa0478340:CDS |
| TGCTCATTACTATGTTTCAT+TGG | 0.423841 | 3_3:-82840958 | Msa0478340:three_prime_UTR |
| ATTAGAAATTTAATCTTTGT+GGG | 0.425010 | 3_3:-82840758 | Msa0478340:three_prime_UTR |
| TTACCTGAATGCCGTGTTCA+AGG | 0.426104 | 3_3:+82842955 | None:intergenic |
| TTACTATGTTTCATTGGTGC+AGG | 0.426193 | 3_3:-82840952 | Msa0478340:three_prime_UTR |
| TGAGGATTACTAGATCTTGC+AGG | 0.428042 | 3_3:-82841302 | Msa0478340:exon |
| GAGGAGGTTGGTGCTGAGTC+TGG | 0.430544 | 3_3:-82841349 | Msa0478340:CDS |
| GGACCATTCAGTTTGTTGAT+TGG | 0.433267 | 3_3:-82841630 | Msa0478340:CDS |
| TTCTTGGTGTTCAATGCTGT+GGG | 0.434584 | 3_3:-82842404 | Msa0478340:CDS |
| CGGCAACAGAAAGCTGTTCA+TGG | 0.435869 | 3_3:+82841800 | None:intergenic |
| TGGAACATGCTTTCCGGCAC+CGG | 0.438085 | 3_3:+82842743 | None:intergenic |
| AGATCATGCACACAGCCCTT+TGG | 0.440237 | 3_3:+82841533 | None:intergenic |
| GTGTTCAATGCTGTGGGTGG+TGG | 0.440766 | 3_3:-82842398 | Msa0478340:CDS |
| CAGTGTGCTCAAGGAGGGAA+TGG | 0.443924 | 3_3:+82842234 | None:intergenic |
| CTCCTCAACGGACATACATT+GGG | 0.446080 | 3_3:-82840706 | Msa0478340:three_prime_UTR |
| TTGGTATGTTGGTGAGGGTA+TGG | 0.447387 | 3_3:-82841428 | Msa0478340:CDS |
| GCGATTGAGGTTGGTGTAAG+TGG | 0.449517 | 3_3:+82842142 | None:intergenic |
| AATGCTGTGGGTGGTGGAAC+CGG | 0.451993 | 3_3:-82842392 | Msa0478340:CDS |
| ATCAAACTTATGATCAATCC+TGG | 0.453188 | 3_3:+82841480 | None:intergenic |
| GTGAAGAAGAATGGAAATGA+AGG | 0.453552 | 3_3:+82843156 | None:intergenic |
| GGTTGAAAGGACACTGTTGT+AGG | 0.458409 | 3_3:+82842256 | None:intergenic |
| ACGCGCCGTCTTCGTAGATC+TGG | 0.458537 | 3_3:-82842721 | Msa0478340:CDS |
| AACAAACTGAATGGTCCTCT+TGG | 0.460464 | 3_3:+82841636 | None:intergenic |
| CTTCTTCACAAAATTCAAAA+GGG | 0.461873 | 3_3:-82843142 | Msa0478340:five_prime_UTR |
| TCCAGGTCGGAAATGCCTGC+TGG | 0.462149 | 3_3:-82842989 | Msa0478340:CDS |
| TTCGCTGAAGAACGTGTTGA+AGG | 0.462873 | 3_3:+82842767 | None:intergenic |
| TGCCGCTGATGAGTTGTTCA+GGG | 0.465671 | 3_3:+82842646 | None:intergenic |
| GGCATTTCCGACCTGGATAC+CGG | 0.466918 | 3_3:+82842995 | None:intergenic |
| AAAAGCACTGTTGGTGATCT+CGG | 0.470781 | 3_3:+82841780 | None:intergenic |
| CCCAGCAGGCATTTCCGACC+TGG | 0.472516 | 3_3:+82842988 | None:intergenic |
| TATTGGATGTGGATTTCCAT+TGG | 0.475872 | 3_3:-82841080 | Msa0478340:three_prime_UTR |
| AATGAGCACTCAAGCAAAAC+CGG | 0.477337 | 3_3:+82840973 | None:intergenic |
| GAAAGCATGAAATGGATCCT+AGG | 0.478017 | 3_3:+82841859 | None:intergenic |
| CCTGAGAGACAAGGCGATTG+AGG | 0.482372 | 3_3:+82842129 | None:intergenic |
| ATGACCACGGGCGAAGTTGT+TGG | 0.484462 | 3_3:+82842611 | None:intergenic |
| GCACACAGCCCTTTGGACCT+TGG | 0.485066 | 3_3:+82841540 | None:intergenic |
| CATTGGTCAAGCCGGTATCC+AGG | 0.488348 | 3_3:-82843006 | Msa0478340:CDS |
| CGTACGAGGAAAGCATGAAA+TGG | 0.493705 | 3_3:+82841851 | None:intergenic |
| GGTGATGGAGATGATGTTGA+TGG | 0.495196 | 3_3:-82841328 | Msa0478340:CDS |
| GTGAAAATAGTTGCATGAGT+TGG | 0.495985 | 3_3:+82841044 | None:intergenic |
| GTCATTGACGAAGTCAGAAC+CGG | 0.497007 | 3_3:-82842690 | Msa0478340:CDS |
| GAGGTAGAAACCTGGGGAGA+TGG | 0.498412 | 3_3:+82842290 | None:intergenic |
| GTGCATTGGTATGTTGGTGA+GGG | 0.501347 | 3_3:-82841433 | Msa0478340:CDS |
| TTTCTTGGTGTTCAATGCTG+TGG | 0.502010 | 3_3:-82842405 | Msa0478340:CDS |
| CTGACTTCGTCAATGACGGT+TGG | 0.504857 | 3_3:+82842696 | None:intergenic |
| TACCGTTTATCCATCTCCCC+AGG | 0.505210 | 3_3:-82842300 | Msa0478340:CDS |
| AAGAGAACCCAAACCAGATC+CGG | 0.505914 | 3_3:+82842373 | None:intergenic |
| TGCTCTCGAGAAGGATTATG+AGG | 0.507547 | 3_3:-82841368 | Msa0478340:CDS |
| ACACAGACGTATCAACAGTC+TGG | 0.508138 | 3_3:+82840655 | None:intergenic |
| TTCTTCAGCGAAACCGGTGC+CGG | 0.513072 | 3_3:-82842756 | Msa0478340:CDS |
| CCCTCGCCATGGAAAATACA+TGG | 0.514501 | 3_3:-82841728 | Msa0478340:CDS |
| TGTATGGTTAGGAATTAACT+AGG | 0.520240 | 3_3:+82843227 | None:intergenic |
| CCAATGCACAAAAGCACGCT+TGG | 0.520245 | 3_3:+82841447 | None:intergenic |
| GTGACTCCTCAGCGGACTAA+AGG | 0.522603 | 3_3:-82840525 | Msa0478340:three_prime_UTR |
| AGAAGAAGAAGAAACGGAAG+AGG | 0.523866 | 3_3:+82843095 | None:intergenic |
| AAGCTATCTATGACATATGC+AGG | 0.524385 | 3_3:-82842187 | Msa0478340:CDS |
| GGTTCTGACTTCGTCAATGA+CGG | 0.528328 | 3_3:+82842692 | None:intergenic |
| AACCTGGGGAGATGGATAAA+CGG | 0.532949 | 3_3:+82842298 | None:intergenic |
| AGGGTCACACTTAGCCATCA+TGG | 0.532951 | 3_3:+82841747 | None:intergenic |
| AACAGAGTTTCAAACCAACT+TGG | 0.533094 | 3_3:-82841890 | Msa0478340:CDS |
| CCTCAGCGGACTAAAGGAAC+CGG | 0.534632 | 3_3:-82840519 | Msa0478340:three_prime_UTR |
| CACTTAGCCATCATGGAAGA+AGG | 0.536043 | 3_3:+82841754 | None:intergenic |
| AGAAGGTTCAAAAGCACTGT+TGG | 0.538677 | 3_3:+82841771 | None:intergenic |
| CCGCGGTGATGTTGTGCCTA+AGG | 0.540342 | 3_3:-82841689 | Msa0478340:CDS |
| GTGATCTTGCCAAGGTCCAA+AGG | 0.540632 | 3_3:-82841549 | Msa0478340:CDS |
| TCTCCTCAACGGACATACAT+TGG | 0.543476 | 3_3:-82840707 | Msa0478340:three_prime_UTR |
| ATGAAATGGATCCTAGGGTA+AGG | 0.544980 | 3_3:+82841865 | None:intergenic |
| CCAGGTCGGAAATGCCTGCT+GGG | 0.545543 | 3_3:-82842988 | Msa0478340:CDS |
| GTTCAGGGTGGAAGAGTTGA+CGG | 0.545624 | 3_3:+82842661 | None:intergenic |
| GTTGGTGAGGGTATGGAAGA+AGG | 0.547203 | 3_3:-82841421 | Msa0478340:CDS |
| TCCTGGTGGTGATCTTGCCA+AGG | 0.548720 | 3_3:-82841557 | Msa0478340:CDS |
| TTGTTGATTGGTGTCCAACT+GGG | 0.551076 | 3_3:-82841618 | Msa0478340:CDS |
| TCAATCCACATTGGTCAAGC+CGG | 0.555162 | 3_3:-82843014 | Msa0478340:CDS |
| ATAAACGGTAAAACCCAACT+TGG | 0.555240 | 3_3:+82842313 | None:intergenic |
| GTTGGTGCTGAGTCTGGTGA+TGG | 0.556011 | 3_3:-82841343 | Msa0478340:CDS |
| CCACCAGGAACAACAGTTGG+AGG | 0.556528 | 3_3:+82841571 | None:intergenic |
| CAGGAACAACAGTTGGAGGC+TGG | 0.557000 | 3_3:+82841575 | None:intergenic |
| CCTGGAGACAAGACCGTTGG+AGG | 0.557403 | 3_3:-82842801 | Msa0478340:CDS |
| TCATTTCTATAGCAGTCTAC+CGG | 0.557875 | 3_3:+82840500 | None:intergenic |
| TAACTAGGGTTAGCTCACCT+TGG | 0.557921 | 3_3:+82843242 | None:intergenic |
| TGTGCATTGGTATGTTGGTG+AGG | 0.557980 | 3_3:-82841434 | Msa0478340:CDS |
| TCACCACCAGGAACAACAGT+TGG | 0.562091 | 3_3:+82841568 | None:intergenic |
| GGAGACAAGACCGTTGGAGG+AGG | 0.562701 | 3_3:-82842798 | Msa0478340:CDS |
| AAGAAGAAACGGAAGAGGAG+CGG | 0.563469 | 3_3:+82843100 | None:intergenic |
| CAGCAACATCAGTGTGCTCA+AGG | 0.564079 | 3_3:+82842225 | None:intergenic |
| CAAGGAGGGAATGGGTTGAA+AGG | 0.564699 | 3_3:+82842243 | None:intergenic |
| TATAGTAAAGCCCAATGCTA+AGG | 0.565735 | 3_3:+82841022 | None:intergenic |
| CACCAAGAAACCTTGCAGAC+CGG | 0.566087 | 3_3:+82842418 | None:intergenic |
| TATCAACAGTCTGGAGATTG+TGG | 0.566378 | 3_3:+82840664 | None:intergenic |
| TAACTCTACCAGTGTTGCTG+AGG | 0.566930 | 3_3:-82841509 | Msa0478340:CDS |
| GGCATCATCTCCTCCTCCAA+CGG | 0.567140 | 3_3:+82842788 | None:intergenic |
| TTTGTGTCCTTCAGTTGGGA+AGG | 0.568538 | 3_3:-82842492 | Msa0478340:intron |
| AAAGCATGAAATGGATCCTA+GGG | 0.569228 | 3_3:+82841860 | None:intergenic |
| ACACCAATCAACAAACTGAA+TGG | 0.571183 | 3_3:+82841627 | None:intergenic |
| ATACCGCACTTGAACCCAGT+TGG | 0.571477 | 3_3:+82841604 | None:intergenic |
| GTTGAAAGGACACTGTTGTA+GGG | 0.573119 | 3_3:+82842257 | None:intergenic |
| GGAAAACACCTCAGCAACAC+TGG | 0.575051 | 3_3:+82841501 | None:intergenic |
| AGAGACAAGGCGATTGAGGT+TGG | 0.575918 | 3_3:+82842133 | None:intergenic |
| TCAACAATGACTTGAAAACT+AGG | 0.577097 | 3_3:-82840616 | Msa0478340:three_prime_UTR |
| ACCTGTTATCTCTGCTGAGA+AGG | 0.577342 | 3_3:-82841827 | Msa0478340:CDS |
| AAACCTCAAAGAGGCAGTGA+GGG | 0.578416 | 3_3:+82841936 | None:intergenic |
| TGAGTTCTCTGAGGCTCGTG+AGG | 0.578430 | 3_3:-82841398 | Msa0478340:CDS |
| AACCACAGAGGTAGAAACCT+GGG | 0.579213 | 3_3:+82842283 | None:intergenic |
| ATGCCTGGAGACAAGACCGT+TGG | 0.583327 | 3_3:-82842804 | Msa0478340:CDS |
| ACCACGGGCGAAGTTGTTGG+CGG | 0.584023 | 3_3:+82842614 | None:intergenic |
| GAGAAGGATTATGAGGAGGT+TGG | 0.588091 | 3_3:-82841361 | Msa0478340:CDS |
| GAACTTTACTGCCTTGAACA+CGG | 0.589043 | 3_3:-82842966 | Msa0478340:CDS |
| TGATCTTGCCAAGGTCCAAA+GGG | 0.589383 | 3_3:-82841548 | Msa0478340:CDS |
| AACATCAGTGTGCTCAAGGA+GGG | 0.590528 | 3_3:+82842229 | None:intergenic |
| AGTGTGCTCAAGGAGGGAAT+GGG | 0.591430 | 3_3:+82842235 | None:intergenic |
| TCCCCAGGTTTCTACCTCTG+TGG | 0.593813 | 3_3:-82842285 | Msa0478340:CDS |
| CGATTGAGGTTGGTGTAAGT+GGG | 0.594949 | 3_3:+82842143 | None:intergenic |
| CCAACTTGGTTCCTTACCCT+AGG | 0.596446 | 3_3:-82841876 | Msa0478340:CDS |
| GAAGAGTTGACGGTAAGCAC+CGG | 0.597156 | 3_3:+82842671 | None:intergenic |
| CAACCACAGAGGTAGAAACC+TGG | 0.597626 | 3_3:+82842282 | None:intergenic |
| GTATGGTTAGGAATTAACTA+GGG | 0.599143 | 3_3:+82843228 | None:intergenic |
| AGATCTACGAAGACGGCGCG+TGG | 0.600243 | 3_3:+82842723 | None:intergenic |
| AAGGCAGTAAAGTTCCCAGC+AGG | 0.601634 | 3_3:+82842974 | None:intergenic |
| GGGAAAATTTGAATGAACAA+AGG | 0.602244 | 3_3:+82843058 | None:intergenic |
| TTGTTGATCTATGCCTCGAT+AGG | 0.603776 | 3_3:-82842466 | Msa0478340:CDS |
| AAGCTAGCAGATAACTGTAC+CGG | 0.604721 | 3_3:-82842437 | Msa0478340:CDS |
| GACTTCTCTGTTCTCCTCAA+CGG | 0.605252 | 3_3:-82840718 | Msa0478340:three_prime_UTR |
| CCTCCAACTGTTGTTCCTGG+TGG | 0.605513 | 3_3:-82841571 | Msa0478340:CDS |
| TGGATAACACAATCTGCCAA+TGG | 0.606869 | 3_3:+82841064 | None:intergenic |
| TTGGTGTTCAATGCTGTGGG+TGG | 0.611760 | 3_3:-82842401 | Msa0478340:CDS |
| GAAGAATGGAAATGAAGGAG+AGG | 0.611891 | 3_3:+82843161 | None:intergenic |
| GCCGCCAACAACTTCGCCCG+TGG | 0.616675 | 3_3:-82842615 | Msa0478340:CDS |
| GATAACTGTACCGGTCTGCA+AGG | 0.617527 | 3_3:-82842428 | Msa0478340:CDS |
| CCGGTTCCTTTAGTCCGCTG+AGG | 0.619447 | 3_3:+82840519 | None:intergenic |
| AGATGATGTTGATGGAGATG+AGG | 0.621023 | 3_3:-82841320 | Msa0478340:CDS |
| GGATCTTGCTGCTCTCGAGA+AGG | 0.621052 | 3_3:-82841377 | Msa0478340:CDS |
| GCTAAGTGTGACCCTCGCCA+TGG | 0.621505 | 3_3:-82841739 | Msa0478340:CDS |
| ATCCCAATGTATGTCCGTTG+AGG | 0.628553 | 3_3:+82840704 | None:intergenic |
| AGAGATAACAGGTGCGTACG+AGG | 0.631288 | 3_3:+82841837 | None:intergenic |
| ACTGCAGCATTCACGTCCTT+AGG | 0.632837 | 3_3:+82841673 | None:intergenic |
| CCTAGGGTAAGGAACCAAGT+TGG | 0.636144 | 3_3:+82841876 | None:intergenic |
| CTAGCTTTCGGATCCTATCG+AGG | 0.641945 | 3_3:+82842453 | None:intergenic |
| TGCTCCATCAAACCTCAAAG+AGG | 0.642331 | 3_3:+82841927 | None:intergenic |
| CGTACTGGTATAATGACCAC+GGG | 0.644337 | 3_3:+82842599 | None:intergenic |
| GGTCAAGCCGGTATCCAGGT+CGG | 0.648566 | 3_3:-82843002 | Msa0478340:CDS |
| CACCCTGAACAACTCATCAG+CGG | 0.650288 | 3_3:-82842648 | Msa0478340:CDS |
| TGTCCAACTGGGTTCAAGTG+CGG | 0.653024 | 3_3:-82841607 | Msa0478340:CDS |
| CAACATCAGTGTGCTCAAGG+AGG | 0.655233 | 3_3:+82842228 | None:intergenic |
| TTGCAACCATCAAGACCAAG+AGG | 0.655579 | 3_3:-82841651 | Msa0478340:CDS |
| TGGTTCCAGATCTACGAAGA+CGG | 0.658526 | 3_3:+82842716 | None:intergenic |
| CGCTGATGAGTTGTTCAGGG+TGG | 0.660350 | 3_3:+82842649 | None:intergenic |
| CAAACCTCAAAGAGGCAGTG+AGG | 0.663855 | 3_3:+82841935 | None:intergenic |
| ACGTACTGGTATAATGACCA+CGG | 0.670676 | 3_3:+82842598 | None:intergenic |
| ACCTTGGCAAGATCACCACC+AGG | 0.672683 | 3_3:+82841556 | None:intergenic |
| GGATACCGGCTTGACCAATG+TGG | 0.673011 | 3_3:+82843009 | None:intergenic |
| GAGTGCATTTCAATCCACAT+TGG | 0.673256 | 3_3:-82843023 | Msa0478340:CDS |
| AAGTATATACCTGAGAGACA+AGG | 0.681840 | 3_3:+82842120 | None:intergenic |
| TCTCGAGAAGGATTATGAGG+AGG | 0.693923 | 3_3:-82841365 | Msa0478340:CDS |
| ATTTCAATGTGACTCCTCAG+CGG | 0.703918 | 3_3:-82840533 | Msa0478340:three_prime_UTR |
| ACCACAGAGGTAGAAACCTG+GGG | 0.712460 | 3_3:+82842284 | None:intergenic |
| GCTTGTTGTTTGATGTACCG+CGG | 0.713100 | 3_3:-82841706 | Msa0478340:CDS |
| GGAAGAAGGTGAGTTCTCTG+AGG | 0.713464 | 3_3:-82841407 | Msa0478340:CDS |
| GTTGTAGGGTTCAACCACAG+AGG | 0.742914 | 3_3:+82842271 | None:intergenic |
| CCTTAGGCACAACATCACCG+CGG | 0.844586 | 3_3:+82841689 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAGTTTTAAACTTTCAT+TGG | - | chr3_3:82842564-82842583 | Msa0478340:intron | 15.0% |
| !! | TTTCAAAAATTAGATAAAAC+CGG | - | chr3_3:82842689-82842708 | Msa0478340:CDS | 15.0% |
| !! | TATTAGAAATTTAATCTTTG+TGG | - | chr3_3:82842922-82842941 | Msa0478340:intron | 15.0% |
| !! | ATTAGAAATTTAATCTTTGT+GGG | - | chr3_3:82842923-82842942 | Msa0478340:intron | 15.0% |
| !!! | GAAATGATTTAAAACAATAT+TGG | - | chr3_3:82843197-82843216 | Msa0478340:five_prime_UTR | 15.0% |
| !!! | TAAATTTGAAATGTATGGTT+AGG | + | chr3_3:82840468-82840487 | None:intergenic | 20.0% |
| !!! | GAAACTAAATTTGAAATGTA+TGG | + | chr3_3:82840473-82840492 | None:intergenic | 20.0% |
| !!! | GAGATCTAGAATTAAAAAAA+TGG | + | chr3_3:82840772-82840791 | None:intergenic | 20.0% |
| !! | TAATTCTAGATCTCAAATTT+AGG | - | chr3_3:82840778-82840797 | Msa0478340:three_prime_UTR | 20.0% |
| !! | AATTCTAGATCTCAAATTTA+GGG | - | chr3_3:82840779-82840798 | Msa0478340:three_prime_UTR | 20.0% |
| !! | AATTATGTAGCAAATATTTG+AGG | - | chr3_3:82841633-82841652 | Msa0478340:CDS | 20.0% |
| !!! | CTTTAATCTACATTTTGTTT+CGG | - | chr3_3:82842508-82842527 | Msa0478340:intron | 20.0% |
| !! | TTGAATTTTGTGAAGAAGAA+TGG | + | chr3_3:82840537-82840556 | None:intergenic | 25.0% |
| ! | TCTTCTTCACAAAATTCAAA+AGG | - | chr3_3:82840538-82840557 | Msa0478340:three_prime_UTR | 25.0% |
| ! | CTTCTTCACAAAATTCAAAA+GGG | - | chr3_3:82840539-82840558 | Msa0478340:three_prime_UTR | 25.0% |
| ! | TTTCAATTGATTAATCGATG+CGG | - | chr3_3:82840829-82840848 | Msa0478340:three_prime_UTR | 25.0% |
| ! | TTATGGTAAAAAATCCAAGT+TGG | - | chr3_3:82841354-82841373 | Msa0478340:CDS | 25.0% |
| ! | TATGGTAAAAAATCCAAGTT+GGG | - | chr3_3:82841355-82841374 | Msa0478340:CDS | 25.0% |
| ! | TAACAACCAAATATAGAGAA+TGG | - | chr3_3:82841583-82841602 | Msa0478340:CDS | 25.0% |
| !!! | TGCTGTTTCATTTTAATTTC+TGG | - | chr3_3:82842424-82842443 | Msa0478340:CDS | 25.0% |
| !!! | GCTGTTTCATTTTAATTTCT+GGG | - | chr3_3:82842425-82842444 | Msa0478340:CDS | 25.0% |
| !! | GCTTTTTAATGTTTTCTTTG+TGG | - | chr3_3:82842850-82842869 | Msa0478340:intron | 25.0% |
| ! | TCAAACATTTCTTCAACTTT+AGG | - | chr3_3:82843123-82843142 | Msa0478340:five_prime_UTR | 25.0% |
| ! | CAAACATTTCTTCAACTTTA+GGG | - | chr3_3:82843124-82843143 | Msa0478340:five_prime_UTR | 25.0% |
| GTATGGTTAGGAATTAACTA+GGG | + | chr3_3:82840456-82840475 | None:intergenic | 30.0% | |
| TGTATGGTTAGGAATTAACT+AGG | + | chr3_3:82840457-82840476 | None:intergenic | 30.0% | |
| GAAGAAAGAAGAAGAAGAAA+CGG | + | chr3_3:82840595-82840614 | None:intergenic | 30.0% | |
| TTTCTTCTTCTTCTTTCTTC+TGG | - | chr3_3:82840595-82840614 | Msa0478340:three_prime_UTR | 30.0% | |
| GGGAAAATTTGAATGAACAA+AGG | + | chr3_3:82840626-82840645 | None:intergenic | 30.0% | |
| GGCATTCAGGTAATTAATTA+GGG | - | chr3_3:82840736-82840755 | Msa0478340:three_prime_UTR | 30.0% | |
| CAAGATCCATTCTCTATATT+TGG | + | chr3_3:82841592-82841611 | None:intergenic | 30.0% | |
| ! | TTTGTTTGATGTGCTTTTAC+AGG | - | chr3_3:82841713-82841732 | Msa0478340:CDS | 30.0% |
| ATCAAACTTATGATCAATCC+TGG | + | chr3_3:82842204-82842223 | None:intergenic | 30.0% | |
| ! | TGGATGAACGTTTTCTTTAT+TGG | - | chr3_3:82842584-82842603 | Msa0478340:intron | 30.0% |
| ! | AACGTTTTCTTTATTGGATG+TGG | - | chr3_3:82842590-82842609 | Msa0478340:intron | 30.0% |
| ! | AACTATTTTCACCTTAGCAT+TGG | - | chr3_3:82842648-82842667 | Msa0478340:CDS | 30.0% |
| ! | ACTATTTTCACCTTAGCATT+GGG | - | chr3_3:82842649-82842668 | Msa0478340:CDS | 30.0% |
| TGCTCATTACTATGTTTCAT+TGG | - | chr3_3:82842723-82842742 | Msa0478340:CDS | 30.0% | |
| ! | TTATAAGTGTTTTGTGAGCA+AGG | - | chr3_3:82842894-82842913 | Msa0478340:intron | 30.0% |
| TCAACAATGACTTGAAAACT+AGG | - | chr3_3:82843065-82843084 | Msa0478340:five_prime_UTR | 30.0% | |
| GTGAAGAAGAATGGAAATGA+AGG | + | chr3_3:82840528-82840547 | None:intergenic | 35.0% | |
| ! | AATGCACTCTCTCATTTTCT+CGG | + | chr3_3:82840647-82840666 | None:intergenic | 35.0% |
| CGGCATTCAGGTAATTAATT+AGG | - | chr3_3:82840735-82840754 | Msa0478340:three_prime_UTR | 35.0% | |
| ATTGAATGACGAAAACGTAC+TGG | + | chr3_3:82841100-82841119 | None:intergenic | 35.0% | |
| ! | TATGATTTGTGTCCTTCAGT+TGG | - | chr3_3:82841184-82841203 | Msa0478340:three_prime_UTR | 35.0% |
| ! | ATGATTTGTGTCCTTCAGTT+GGG | - | chr3_3:82841185-82841204 | Msa0478340:three_prime_UTR | 35.0% |
| !! | TACAGTTATCTGCTAGCTTT+CGG | + | chr3_3:82841243-82841262 | None:intergenic | 35.0% |
| ! | GAGCGTTTATCTGTTGATTA+TGG | - | chr3_3:82841337-82841356 | Msa0478340:CDS | 35.0% |
| ATAAACGGTAAAACCCAACT+TGG | + | chr3_3:82841371-82841390 | None:intergenic | 35.0% | |
| AAGCTATCTATGACATATGC+AGG | - | chr3_3:82841494-82841513 | Msa0478340:CDS | 35.0% | |
| AAGTATATACCTGAGAGACA+AGG | + | chr3_3:82841564-82841583 | None:intergenic | 35.0% | |
| GATCTTGAAATGTTTGCGTT+TGG | - | chr3_3:82841605-82841624 | Msa0478340:CDS | 35.0% | |
| AACAGAGTTTCAAACCAACT+TGG | - | chr3_3:82841791-82841810 | Msa0478340:CDS | 35.0% | |
| AAAGCATGAAATGGATCCTA+GGG | + | chr3_3:82841824-82841843 | None:intergenic | 35.0% | |
| ! | TTTTGAACCTTCTTCCATGA+TGG | - | chr3_3:82841920-82841939 | Msa0478340:CDS | 35.0% |
| ! | AACAAGCCATGTATTTTCCA+TGG | + | chr3_3:82841962-82841981 | None:intergenic | 35.0% |
| ACACCAATCAACAAACTGAA+TGG | + | chr3_3:82842057-82842076 | None:intergenic | 35.0% | |
| GTGAATCTCTCTTTCTTTGT+TGG | - | chr3_3:82842530-82842549 | Msa0478340:intron | 35.0% | |
| TATTGGATGTGGATTTCCAT+TGG | - | chr3_3:82842601-82842620 | Msa0478340:intron | 35.0% | |
| GTGAAAATAGTTGCATGAGT+TGG | + | chr3_3:82842640-82842659 | None:intergenic | 35.0% | |
| TATAGTAAAGCCCAATGCTA+AGG | + | chr3_3:82842662-82842681 | None:intergenic | 35.0% | |
| TTACTATGTTTCATTGGTGC+AGG | - | chr3_3:82842729-82842748 | Msa0478340:CDS | 35.0% | |
| TCATTTCTATAGCAGTCTAC+CGG | + | chr3_3:82843184-82843203 | None:intergenic | 35.0% | |
| GAAGAATGGAAATGAAGGAG+AGG | + | chr3_3:82840523-82840542 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAACGGAAG+AGG | + | chr3_3:82840589-82840608 | None:intergenic | 40.0% | |
| ! | ATGCACTCTCTCATTTTCTC+GGG | + | chr3_3:82840646-82840665 | None:intergenic | 40.0% |
| GAGTGCATTTCAATCCACAT+TGG | - | chr3_3:82840658-82840677 | Msa0478340:three_prime_UTR | 40.0% | |
| GAACTTTACTGCCTTGAACA+CGG | - | chr3_3:82840715-82840734 | Msa0478340:three_prime_UTR | 40.0% | |
| ! | ACGTACTGGTATAATGACCA+CGG | + | chr3_3:82841086-82841105 | None:intergenic | 40.0% |
| TTGTTGATCTATGCCTCGAT+AGG | - | chr3_3:82841215-82841234 | Msa0478340:three_prime_UTR | 40.0% | |
| AAGCTAGCAGATAACTGTAC+CGG | - | chr3_3:82841244-82841263 | Msa0478340:three_prime_UTR | 40.0% | |
| !! | TTTCTTGGTGTTCAATGCTG+TGG | - | chr3_3:82841276-82841295 | Msa0478340:three_prime_UTR | 40.0% |
| !! | TTCTTGGTGTTCAATGCTGT+GGG | - | chr3_3:82841277-82841296 | Msa0478340:three_prime_UTR | 40.0% |
| GTTGAAAGGACACTGTTGTA+GGG | + | chr3_3:82841427-82841446 | None:intergenic | 40.0% | |
| ATGAAATGGATCCTAGGGTA+AGG | + | chr3_3:82841819-82841838 | None:intergenic | 40.0% | |
| ! | GAAAGCATGAAATGGATCCT+AGG | + | chr3_3:82841825-82841844 | None:intergenic | 40.0% |
| !! | AAAAGCACTGTTGGTGATCT+CGG | + | chr3_3:82841904-82841923 | None:intergenic | 40.0% |
| !! | AGAAGGTTCAAAAGCACTGT+TGG | + | chr3_3:82841913-82841932 | None:intergenic | 40.0% |
| AACAAACTGAATGGTCCTCT+TGG | + | chr3_3:82842048-82842067 | None:intergenic | 40.0% | |
| !! | GGACCATTCAGTTTGTTGAT+TGG | - | chr3_3:82842051-82842070 | Msa0478340:intron | 40.0% |
| ! | TTTGTTGATTGGTGTCCAAC+TGG | - | chr3_3:82842062-82842081 | Msa0478340:intron | 40.0% |
| ! | TTGTTGATTGGTGTCCAACT+GGG | - | chr3_3:82842063-82842082 | Msa0478340:intron | 40.0% |
| !! | GCTTTTGTGCATTGGTATGT+TGG | - | chr3_3:82842242-82842261 | Msa0478340:CDS | 40.0% |
| ! | AGATGATGTTGATGGAGATG+AGG | - | chr3_3:82842361-82842380 | Msa0478340:CDS | 40.0% |
| TGAGGATTACTAGATCTTGC+AGG | - | chr3_3:82842379-82842398 | Msa0478340:CDS | 40.0% | |
| TGGATAACACAATCTGCCAA+TGG | + | chr3_3:82842620-82842639 | None:intergenic | 40.0% | |
| AATGAGCACTCAAGCAAAAC+CGG | + | chr3_3:82842711-82842730 | None:intergenic | 40.0% | |
| ! | GGACATACATTGGGATTTTC+TGG | - | chr3_3:82842984-82843003 | Msa0478340:CDS | 40.0% |
| TATCAACAGTCTGGAGATTG+TGG | + | chr3_3:82843020-82843039 | None:intergenic | 40.0% | |
| ATTTCAATGTGACTCCTCAG+CGG | - | chr3_3:82843148-82843167 | Msa0478340:five_prime_UTR | 40.0% | |
| !! | TAACTAGGGTTAGCTCACCT+TGG | + | chr3_3:82840442-82840461 | None:intergenic | 45.0% |
| AAGAAGAAACGGAAGAGGAG+CGG | + | chr3_3:82840584-82840603 | None:intergenic | 45.0% | |
| TCAATCCACATTGGTCAAGC+CGG | - | chr3_3:82840667-82840686 | Msa0478340:three_prime_UTR | 45.0% | |
| TTACCTGAATGCCGTGTTCA+AGG | + | chr3_3:82840729-82840748 | None:intergenic | 45.0% | |
| !!! | GGTGTTGTTTTTCAGCCTGA+TGG | - | chr3_3:82840850-82840869 | Msa0478340:three_prime_UTR | 45.0% |
| TTCGCTGAAGAACGTGTTGA+AGG | + | chr3_3:82840917-82840936 | None:intergenic | 45.0% | |
| AACACGTTCTTCAGCGAAAC+CGG | - | chr3_3:82840919-82840938 | Msa0478340:three_prime_UTR | 45.0% | |
| TGGTTCCAGATCTACGAAGA+CGG | + | chr3_3:82840968-82840987 | None:intergenic | 45.0% | |
| ! | GGTTCTGACTTCGTCAATGA+CGG | + | chr3_3:82840992-82841011 | None:intergenic | 45.0% |
| GTCATTGACGAAGTCAGAAC+CGG | - | chr3_3:82840991-82841010 | Msa0478340:three_prime_UTR | 45.0% | |
| ! | CGTACTGGTATAATGACCAC+GGG | + | chr3_3:82841085-82841104 | None:intergenic | 45.0% |
| TTTGTGTCCTTCAGTTGGGA+AGG | - | chr3_3:82841189-82841208 | Msa0478340:three_prime_UTR | 45.0% | |
| ACAATCTCCTTCCCAACTGA+AGG | + | chr3_3:82841199-82841218 | None:intergenic | 45.0% | |
| AAGAGAACCCAAACCAGATC+CGG | + | chr3_3:82841311-82841330 | None:intergenic | 45.0% | |
| ! | TGGTTTGGGTTCTCTTCTGT+TGG | - | chr3_3:82841315-82841334 | Msa0478340:CDS | 45.0% |
| AACCTGGGGAGATGGATAAA+CGG | + | chr3_3:82841386-82841405 | None:intergenic | 45.0% | |
| AACCACAGAGGTAGAAACCT+GGG | + | chr3_3:82841401-82841420 | None:intergenic | 45.0% | |
| GGTTGAAAGGACACTGTTGT+AGG | + | chr3_3:82841428-82841447 | None:intergenic | 45.0% | |
| AACATCAGTGTGCTCAAGGA+GGG | + | chr3_3:82841455-82841474 | None:intergenic | 45.0% | |
| !! | CGATTGAGGTTGGTGTAAGT+GGG | + | chr3_3:82841541-82841560 | None:intergenic | 45.0% |
| AAACCTCAAAGAGGCAGTGA+GGG | + | chr3_3:82841748-82841767 | None:intergenic | 45.0% | |
| !! | ACTGCCTCTTTGAGGTTTGA+TGG | - | chr3_3:82841750-82841769 | Msa0478340:CDS | 45.0% |
| TGCTCCATCAAACCTCAAAG+AGG | + | chr3_3:82841757-82841776 | None:intergenic | 45.0% | |
| ! | CGTACGAGGAAAGCATGAAA+TGG | + | chr3_3:82841833-82841852 | None:intergenic | 45.0% |
| ACCTGTTATCTCTGCTGAGA+AGG | - | chr3_3:82841854-82841873 | Msa0478340:CDS | 45.0% | |
| CACTTAGCCATCATGGAAGA+AGG | + | chr3_3:82841930-82841949 | None:intergenic | 45.0% | |
| ! | CCATGTATTTTCCATGGCGA+GGG | + | chr3_3:82841956-82841975 | None:intergenic | 45.0% |
| !! | GCTTGTTGTTTGATGTACCG+CGG | - | chr3_3:82841975-82841994 | Msa0478340:intron | 45.0% |
| TTGCAACCATCAAGACCAAG+AGG | - | chr3_3:82842030-82842049 | Msa0478340:intron | 45.0% | |
| !! | AATGGTCCTCTTGGTCTTGA+TGG | + | chr3_3:82842039-82842058 | None:intergenic | 45.0% |
| TGATCTTGCCAAGGTCCAAA+GGG | - | chr3_3:82842133-82842152 | Msa0478340:CDS | 45.0% | |
| ! | TAACTCTACCAGTGTTGCTG+AGG | - | chr3_3:82842172-82842191 | Msa0478340:CDS | 45.0% |
| ! | TGTGCATTGGTATGTTGGTG+AGG | - | chr3_3:82842247-82842266 | Msa0478340:CDS | 45.0% |
| ! | GTGCATTGGTATGTTGGTGA+GGG | - | chr3_3:82842248-82842267 | Msa0478340:CDS | 45.0% |
| ! | TTGGTATGTTGGTGAGGGTA+TGG | - | chr3_3:82842253-82842272 | Msa0478340:CDS | 45.0% |
| TGCTCTCGAGAAGGATTATG+AGG | - | chr3_3:82842313-82842332 | Msa0478340:CDS | 45.0% | |
| TCTCGAGAAGGATTATGAGG+AGG | - | chr3_3:82842316-82842335 | Msa0478340:CDS | 45.0% | |
| GAGAAGGATTATGAGGAGGT+TGG | - | chr3_3:82842320-82842339 | Msa0478340:CDS | 45.0% | |
| !! | GGTGATGGAGATGATGTTGA+TGG | - | chr3_3:82842353-82842372 | Msa0478340:CDS | 45.0% |
| TTCATTGGTGCAGGATCGTT+TGG | - | chr3_3:82842738-82842757 | Msa0478340:CDS | 45.0% | |
| GACTTCTCTGTTCTCCTCAA+CGG | - | chr3_3:82842963-82842982 | Msa0478340:CDS | 45.0% | |
| TCTCCTCAACGGACATACAT+TGG | - | chr3_3:82842974-82842993 | Msa0478340:CDS | 45.0% | |
| CTCCTCAACGGACATACATT+GGG | - | chr3_3:82842975-82842994 | Msa0478340:CDS | 45.0% | |
| ATCCCAATGTATGTCCGTTG+AGG | + | chr3_3:82842980-82842999 | None:intergenic | 45.0% | |
| ACACAGACGTATCAACAGTC+TGG | + | chr3_3:82843029-82843048 | None:intergenic | 45.0% | |
| AAGGCAGTAAAGTTCCCAGC+AGG | + | chr3_3:82840710-82840729 | None:intergenic | 50.0% | |
| CTGACTTCGTCAATGACGGT+TGG | + | chr3_3:82840988-82841007 | None:intergenic | 50.0% | |
| GAAGAGTTGACGGTAAGCAC+CGG | + | chr3_3:82841013-82841032 | None:intergenic | 50.0% | |
| GTTCAGGGTGGAAGAGTTGA+CGG | + | chr3_3:82841023-82841042 | None:intergenic | 50.0% | |
| CACCCTGAACAACTCATCAG+CGG | - | chr3_3:82841033-82841052 | Msa0478340:three_prime_UTR | 50.0% | |
| TGCCGCTGATGAGTTGTTCA+GGG | + | chr3_3:82841038-82841057 | None:intergenic | 50.0% | |
| TTGCCGCTGATGAGTTGTTC+AGG | + | chr3_3:82841039-82841058 | None:intergenic | 50.0% | |
| ! | CTAGCTTTCGGATCCTATCG+AGG | + | chr3_3:82841231-82841250 | None:intergenic | 50.0% |
| ! | GATAACTGTACCGGTCTGCA+AGG | - | chr3_3:82841253-82841272 | Msa0478340:three_prime_UTR | 50.0% |
| TACCGGTCTGCAAGGTTTCT+TGG | - | chr3_3:82841261-82841280 | Msa0478340:three_prime_UTR | 50.0% | |
| CACCAAGAAACCTTGCAGAC+CGG | + | chr3_3:82841266-82841285 | None:intergenic | 50.0% | |
| ! | TTGGTGTTCAATGCTGTGGG+TGG | - | chr3_3:82841280-82841299 | Msa0478340:three_prime_UTR | 50.0% |
| TACCGTTTATCCATCTCCCC+AGG | - | chr3_3:82841381-82841400 | Msa0478340:CDS | 50.0% | |
| ACCACAGAGGTAGAAACCTG+GGG | + | chr3_3:82841400-82841419 | None:intergenic | 50.0% | |
| CAACCACAGAGGTAGAAACC+TGG | + | chr3_3:82841402-82841421 | None:intergenic | 50.0% | |
| GTTGTAGGGTTCAACCACAG+AGG | + | chr3_3:82841413-82841432 | None:intergenic | 50.0% | |
| !! | CAAGGAGGGAATGGGTTGAA+AGG | + | chr3_3:82841441-82841460 | None:intergenic | 50.0% |
| AGTGTGCTCAAGGAGGGAAT+GGG | + | chr3_3:82841449-82841468 | None:intergenic | 50.0% | |
| CAACATCAGTGTGCTCAAGG+AGG | + | chr3_3:82841456-82841475 | None:intergenic | 50.0% | |
| CAGCAACATCAGTGTGCTCA+AGG | + | chr3_3:82841459-82841478 | None:intergenic | 50.0% | |
| !! | GCGATTGAGGTTGGTGTAAG+TGG | + | chr3_3:82841542-82841561 | None:intergenic | 50.0% |
| AGAGACAAGGCGATTGAGGT+TGG | + | chr3_3:82841551-82841570 | None:intergenic | 50.0% | |
| CAAACCTCAAAGAGGCAGTG+AGG | + | chr3_3:82841749-82841768 | None:intergenic | 50.0% | |
| CCTAGGGTAAGGAACCAAGT+TGG | + | chr3_3:82841808-82841827 | None:intergenic | 50.0% | |
| CCAACTTGGTTCCTTACCCT+AGG | - | chr3_3:82841805-82841824 | Msa0478340:CDS | 50.0% | |
| AGAGATAACAGGTGCGTACG+AGG | + | chr3_3:82841847-82841866 | None:intergenic | 50.0% | |
| GCCTTCTCAGCAGAGATAAC+AGG | + | chr3_3:82841858-82841877 | None:intergenic | 50.0% | |
| CGGCAACAGAAAGCTGTTCA+TGG | + | chr3_3:82841884-82841903 | None:intergenic | 50.0% | |
| AGGGTCACACTTAGCCATCA+TGG | + | chr3_3:82841937-82841956 | None:intergenic | 50.0% | |
| CCCTCGCCATGGAAAATACA+TGG | - | chr3_3:82841953-82841972 | Msa0478340:intron | 50.0% | |
| ! | GCCATGTATTTTCCATGGCG+AGG | + | chr3_3:82841957-82841976 | None:intergenic | 50.0% |
| ACTGCAGCATTCACGTCCTT+AGG | + | chr3_3:82842011-82842030 | None:intergenic | 50.0% | |
| TGTCCAACTGGGTTCAAGTG+CGG | - | chr3_3:82842074-82842093 | Msa0478340:intron | 50.0% | |
| ATACCGCACTTGAACCCAGT+TGG | + | chr3_3:82842080-82842099 | None:intergenic | 50.0% | |
| TCACCACCAGGAACAACAGT+TGG | + | chr3_3:82842116-82842135 | None:intergenic | 50.0% | |
| GTGATCTTGCCAAGGTCCAA+AGG | - | chr3_3:82842132-82842151 | Msa0478340:CDS | 50.0% | |
| AGATCATGCACACAGCCCTT+TGG | + | chr3_3:82842151-82842170 | None:intergenic | 50.0% | |
| GGAAAACACCTCAGCAACAC+TGG | + | chr3_3:82842183-82842202 | None:intergenic | 50.0% | |
| !! | GTGTTGCTGAGGTGTTTTCC+AGG | - | chr3_3:82842183-82842202 | Msa0478340:CDS | 50.0% |
| ! | CCAATGCACAAAAGCACGCT+TGG | + | chr3_3:82842237-82842256 | None:intergenic | 50.0% |
| ! | CCAAGCGTGCTTTTGTGCAT+TGG | - | chr3_3:82842234-82842253 | Msa0478340:CDS | 50.0% |
| ! | GTTGGTGAGGGTATGGAAGA+AGG | - | chr3_3:82842260-82842279 | Msa0478340:CDS | 50.0% |
| GGAAGAAGGTGAGTTCTCTG+AGG | - | chr3_3:82842274-82842293 | Msa0478340:CDS | 50.0% | |
| !! | GGATACCGGCTTGACCAATG+TGG | + | chr3_3:82840675-82840694 | None:intergenic | 55.0% |
| CATTGGTCAAGCCGGTATCC+AGG | - | chr3_3:82840675-82840694 | Msa0478340:three_prime_UTR | 55.0% | |
| GGCATTTCCGACCTGGATAC+CGG | + | chr3_3:82840689-82840708 | None:intergenic | 55.0% | |
| CTGCCTTGAACACGGCATTC+AGG | - | chr3_3:82840723-82840742 | Msa0478340:three_prime_UTR | 55.0% | |
| ATGCCTGGAGACAAGACCGT+TGG | - | chr3_3:82840877-82840896 | Msa0478340:three_prime_UTR | 55.0% | |
| GGCATCATCTCCTCCTCCAA+CGG | + | chr3_3:82840896-82840915 | None:intergenic | 55.0% | |
| TTCTTCAGCGAAACCGGTGC+CGG | - | chr3_3:82840925-82840944 | Msa0478340:three_prime_UTR | 55.0% | |
| TGGAACATGCTTTCCGGCAC+CGG | + | chr3_3:82840941-82840960 | None:intergenic | 55.0% | |
| CGCTGATGAGTTGTTCAGGG+TGG | + | chr3_3:82841035-82841054 | None:intergenic | 55.0% | |
| ATGACCACGGGCGAAGTTGT+TGG | + | chr3_3:82841073-82841092 | None:intergenic | 55.0% | |
| GTGTTCAATGCTGTGGGTGG+TGG | - | chr3_3:82841283-82841302 | Msa0478340:three_prime_UTR | 55.0% | |
| !! | AATGCTGTGGGTGGTGGAAC+CGG | - | chr3_3:82841289-82841308 | Msa0478340:three_prime_UTR | 55.0% |
| TGGTGGAACCGGATCTGGTT+TGG | - | chr3_3:82841300-82841319 | Msa0478340:exon | 55.0% | |
| ! | GGTGGAACCGGATCTGGTTT+GGG | - | chr3_3:82841301-82841320 | Msa0478340:exon | 55.0% |
| GAGGTAGAAACCTGGGGAGA+TGG | + | chr3_3:82841394-82841413 | None:intergenic | 55.0% | |
| TCCCCAGGTTTCTACCTCTG+TGG | - | chr3_3:82841396-82841415 | Msa0478340:CDS | 55.0% | |
| CAGTGTGCTCAAGGAGGGAA+TGG | + | chr3_3:82841450-82841469 | None:intergenic | 55.0% | |
| CCTGAGAGACAAGGCGATTG+AGG | + | chr3_3:82841555-82841574 | None:intergenic | 55.0% | |
| CCTCAATCGCCTTGTCTCTC+AGG | - | chr3_3:82841552-82841571 | Msa0478340:CDS | 55.0% | |
| CATCCCTCACTGCCTCTTTG+AGG | - | chr3_3:82841742-82841761 | Msa0478340:CDS | 55.0% | |
| CCTTAGGCACAACATCACCG+CGG | + | chr3_3:82841995-82842014 | None:intergenic | 55.0% | |
| CAGGAACAACAGTTGGAGGC+TGG | + | chr3_3:82842109-82842128 | None:intergenic | 55.0% | |
| CAGCCTCCAACTGTTGTTCC+TGG | - | chr3_3:82842107-82842126 | Msa0478340:intron | 55.0% | |
| CCACCAGGAACAACAGTTGG+AGG | + | chr3_3:82842113-82842132 | None:intergenic | 55.0% | |
| CCTCCAACTGTTGTTCCTGG+TGG | - | chr3_3:82842110-82842129 | Msa0478340:intron | 55.0% | |
| ! | TCCTGGTGGTGATCTTGCCA+AGG | - | chr3_3:82842124-82842143 | Msa0478340:intron | 55.0% |
| ACCTTGGCAAGATCACCACC+AGG | + | chr3_3:82842128-82842147 | None:intergenic | 55.0% | |
| !! | TGAGTTCTCTGAGGCTCGTG+AGG | - | chr3_3:82842283-82842302 | Msa0478340:CDS | 55.0% |
| GGATCTTGCTGCTCTCGAGA+AGG | - | chr3_3:82842304-82842323 | Msa0478340:CDS | 55.0% | |
| !! | GTTGGTGCTGAGTCTGGTGA+TGG | - | chr3_3:82842338-82842357 | Msa0478340:CDS | 55.0% |
| !! | GTGACTCCTCAGCGGACTAA+AGG | - | chr3_3:82843156-82843175 | Msa0478340:five_prime_UTR | 55.0% |
| !! | CCTCAGCGGACTAAAGGAAC+CGG | - | chr3_3:82843162-82843181 | Msa0478340:five_prime_UTR | 55.0% |
| GGTCAAGCCGGTATCCAGGT+CGG | - | chr3_3:82840679-82840698 | Msa0478340:three_prime_UTR | 60.0% | |
| TCCAGGTCGGAAATGCCTGC+TGG | - | chr3_3:82840692-82840711 | Msa0478340:three_prime_UTR | 60.0% | |
| CCAGGTCGGAAATGCCTGCT+GGG | - | chr3_3:82840693-82840712 | Msa0478340:three_prime_UTR | 60.0% | |
| TCTCCAGGCATCTGGCCATC+AGG | + | chr3_3:82840868-82840887 | None:intergenic | 60.0% | |
| ! | CGGTCTTGTCTCCAGGCATC+TGG | + | chr3_3:82840876-82840895 | None:intergenic | 60.0% |
| ! | CCTCCAACGGTCTTGTCTCC+AGG | + | chr3_3:82840883-82840902 | None:intergenic | 60.0% |
| CCTGGAGACAAGACCGTTGG+AGG | - | chr3_3:82840880-82840899 | Msa0478340:three_prime_UTR | 60.0% | |
| GGAGACAAGACCGTTGGAGG+AGG | - | chr3_3:82840883-82840902 | Msa0478340:three_prime_UTR | 60.0% | |
| GGCGCGTGGAACATGCTTTC+CGG | + | chr3_3:82840947-82840966 | None:intergenic | 60.0% | |
| AGATCTACGAAGACGGCGCG+TGG | + | chr3_3:82840961-82840980 | None:intergenic | 60.0% | |
| ACGCGCCGTCTTCGTAGATC+TGG | - | chr3_3:82840960-82840979 | Msa0478340:three_prime_UTR | 60.0% | |
| ACCACGGGCGAAGTTGTTGG+CGG | + | chr3_3:82841070-82841089 | None:intergenic | 60.0% | |
| GCTAAGTGTGACCCTCGCCA+TGG | - | chr3_3:82841942-82841961 | Msa0478340:CDS | 60.0% | |
| CCGCGGTGATGTTGTGCCTA+AGG | - | chr3_3:82841992-82842011 | Msa0478340:intron | 60.0% | |
| GCACACAGCCCTTTGGACCT+TGG | + | chr3_3:82842144-82842163 | None:intergenic | 60.0% | |
| !! | GAGGAGGTTGGTGCTGAGTC+TGG | - | chr3_3:82842332-82842351 | Msa0478340:CDS | 60.0% |
| CCGGTTCCTTTAGTCCGCTG+AGG | + | chr3_3:82843165-82843184 | None:intergenic | 60.0% | |
| CCCAGCAGGCATTTCCGACC+TGG | + | chr3_3:82840696-82840715 | None:intergenic | 65.0% | |
| CAGCCTGATGGCCAGATGCC+TGG | - | chr3_3:82840862-82840881 | Msa0478340:three_prime_UTR | 65.0% | |
| !! | GTGGGTGGTGGAACCGGATC+TGG | - | chr3_3:82841295-82841314 | Msa0478340:exon | 65.0% |
| GCCGCCAACAACTTCGCCCG+TGG | - | chr3_3:82841066-82841085 | Msa0478340:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 82840439 | 82843264 | 82840439 | ID=Msa0478340;Name=Msa0478340 |
| chr3_3 | mRNA | 82840439 | 82843264 | 82840439 | ID=Msa0478340-mRNA-1;Parent=Msa0478340;Name=Msa0478340-mRNA-1;_AED=0.03;_eAED=0.03;_QI=213|1|1|1|1|1|4|873|451 |
| chr3_3 | exon | 82840439 | 82841968 | 82840439 | ID=Msa0478340-mRNA-1:exon:23230;Parent=Msa0478340-mRNA-1 |
| chr3_3 | exon | 82842130 | 82842500 | 82842130 | ID=Msa0478340-mRNA-1:exon:23229;Parent=Msa0478340-mRNA-1 |
| chr3_3 | exon | 82842604 | 82842838 | 82842604 | ID=Msa0478340-mRNA-1:exon:23228;Parent=Msa0478340-mRNA-1 |
| chr3_3 | exon | 82842959 | 82843264 | 82842959 | ID=Msa0478340-mRNA-1:exon:23227;Parent=Msa0478340-mRNA-1 |
| chr3_3 | five_prime_UTR | 82843052 | 82843264 | 82843052 | ID=Msa0478340-mRNA-1:five_prime_utr;Parent=Msa0478340-mRNA-1 |
| chr3_3 | CDS | 82842959 | 82843051 | 82842959 | ID=Msa0478340-mRNA-1:cds;Parent=Msa0478340-mRNA-1 |
| chr3_3 | CDS | 82842604 | 82842838 | 82842604 | ID=Msa0478340-mRNA-1:cds;Parent=Msa0478340-mRNA-1 |
| chr3_3 | CDS | 82842130 | 82842500 | 82842130 | ID=Msa0478340-mRNA-1:cds;Parent=Msa0478340-mRNA-1 |
| chr3_3 | CDS | 82841312 | 82841968 | 82841312 | ID=Msa0478340-mRNA-1:cds;Parent=Msa0478340-mRNA-1 |
| chr3_3 | three_prime_UTR | 82840439 | 82841311 | 82840439 | ID=Msa0478340-mRNA-1:three_prime_utr;Parent=Msa0478340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
