AlfalfaGEDB | Msa0522440

M. sativa cultivar zhongmu-4 / Msa0522440

KEGG: K07374
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464
PFAM: PF00091.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522440	XP_003603670.1	100.000	451	0	0	1	451	1	451	0.0	939

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522440	sp\|P46259\|TBA1_PEA	98.894	452	4	1	1	451	1	452	0.0	926

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522440	G7J421	100.000	451	0	0	1	451	1	451	0.0	939

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0242820	Msa0522440	0.808202	3.476940e-50	-8.615850e-47
Msa0269260	Msa0522440	0.976243	1.871834e-141	-8.615850e-47
Msa0287660	Msa0522440	0.801463	8.898439e-49	-8.615850e-47
Msa0384060	Msa0522440	0.973986	2.289129e-137	-8.615850e-47
Msa0426840	Msa0522440	0.801202	1.006224e-48	-8.615850e-47
Msa0478340	Msa0522440	0.994756	6.293157e-210	-8.615850e-47
Msa0522440	Msa0667070	0.807656	4.544365e-50	-8.615850e-47
Msa0522440	Msa1041160	0.817158	3.811769e-52	-8.615850e-47
Msa0522440	Msa1127170	0.810503	1.115791e-50	-8.615850e-47
Msa0522440	Msa1204600	0.804968	1.674297e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522440	MtrunA17_Chr3g0140821	100.000	451	0	0	1	451	1	451	0.0	939
Msa0522440	MtrunA17_Chr4g0054511	97.118	451	13	0	1	451	1	451	0.0	914
Msa0522440	MtrunA17_Chr1g0206881	97.550	449	11	0	1	449	1	449	0.0	914
Msa0522440	MtrunA17_Chr8g0378821	92.874	435	31	0	1	435	1	435	0.0	834
Msa0522440	MtrunA17_Chr7g0253411	91.403	442	38	0	1	442	1	442	0.0	829
Msa0522440	MtrunA17_Chr6g0461281	83.628	452	69	3	1	451	1	448	0.0	774
Msa0522440	MtrunA17_Chr2g0300491	73.719	449	113	2	1	449	1	444	0.0	661
Msa0522440	MtrunA17_Chr2g0300671	74.603	441	107	2	1	441	1	436	0.0	658
Msa0522440	MtrunA17_Chr4g0051631	42.166	434	241	2	1	434	1	424	8.52e-126	372
Msa0522440	MtrunA17_Chr8g0393021	41.372	452	254	3	1	450	1	443	8.80e-126	372

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0522440	AT4G14960.2	97.105	449	13	0	1	449	1	449	0.0	913
Msa0522440	AT1G50010.1	96.882	449	14	0	1	449	1	449	0.0	911
Msa0522440	AT1G04820.1	96.882	449	14	0	1	449	1	449	0.0	911
Msa0522440	AT5G19780.1	93.793	435	27	0	1	435	1	435	0.0	839
Msa0522440	AT5G19770.1	93.793	435	27	0	1	435	1	435	0.0	839
Msa0522440	AT1G64740.1	90.345	435	42	0	1	435	1	435	0.0	813
Msa0522440	AT4G14960.1	94.103	407	17	1	1	407	1	400	0.0	800
Msa0522440	AT1G75780.1	41.475	434	245	2	1	434	1	425	1.61e-126	374
Msa0522440	AT5G62690.1	41.935	434	242	2	1	434	1	424	3.91e-125	371
Msa0522440	AT5G62700.1	41.935	434	242	2	1	434	1	424	3.91e-125	371

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Find 183 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACTGTTGGTGATCT+CGG	0.470781	3_4:+75529390	None:intergenic
AAACCTCAAAGAGGCAGTGA+GGG	0.578416	3_4:+75529546	None:intergenic
AAAGCATGAAATGGATCCTA+GGG	0.569228	3_4:+75529470	None:intergenic
AACAAACTGAATGGTCCTCT+TGG	0.460464	3_4:+75529246	None:intergenic
AACACGTTCTTCAGCGAAAC+CGG	0.356725	3_4:-75530366	Msa0522440:CDS
AACAGAGTTTCAAACCAACT+TGG	0.533094	3_4:-75529500	Msa0522440:CDS
AACATCAGTGTGCTCAAGGA+GGG	0.590528	3_4:+75529839	None:intergenic
AACCACAGAGGTAGAAACCT+GGG	0.579213	3_4:+75529893	None:intergenic
AACCTGGGGAGATGGATAAA+CGG	0.532949	3_4:+75529908	None:intergenic
AAGAAGAAACGGAAGAGGAG+CGG	0.563469	3_4:+75530706	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATGGTTAGGAATTAACTA+GGG	+	chr3_4:75528184-75528203	None:intergenic	30.0%
TGTATGGTTAGGAATTAACT+AGG	+	chr3_4:75528185-75528204	None:intergenic	30.0%
GAAGAAAGAAGAAGAAGAAA+CGG	+	chr3_4:75528323-75528342	None:intergenic	30.0%
GGGAAAATTTGAATGAACAA+AGG	+	chr3_4:75528354-75528373	None:intergenic	30.0%
GGCATTCAGGTAATTAATTA+GGG	-	chr3_4:75528464-75528483	Msa0522440:three_prime_UTR	30.0%
CAAGATCCATTCTCTATATT+TGG	+	chr3_4:75529316-75529335	None:intergenic	30.0%
ATCAAACTTATGATCAATCC+TGG	+	chr3_4:75529928-75529947	None:intergenic	30.0%
TCAACAATGACTTGAAAACT+AGG	-	chr3_4:75530791-75530810	Msa0522440:five_prime_UTR	30.0%
GTGAAGAAGAATGGAAATGA+AGG	+	chr3_4:75528256-75528275	None:intergenic	35.0%
CGGCATTCAGGTAATTAATT+AGG	-	chr3_4:75528463-75528482	Msa0522440:three_prime_UTR	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	75528167	75530870	75528167	ID=Msa0522440;Name=Msa0522440
chr3_4	mRNA	75528167	75530870	75528167	ID=Msa0522440-mRNA-1;Parent=Msa0522440;Name=Msa0522440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=213\|1\|1\|1\|1\|1\|4\|755\|451
chr3_4	exon	75528167	75529578	75528167	ID=Msa0522440-mRNA-1:exon:21696;Parent=Msa0522440-mRNA-1
chr3_4	exon	75529740	75530110	75529740	ID=Msa0522440-mRNA-1:exon:21695;Parent=Msa0522440-mRNA-1
chr3_4	exon	75530208	75530442	75530208	ID=Msa0522440-mRNA-1:exon:21694;Parent=Msa0522440-mRNA-1
chr3_4	exon	75530565	75530870	75530565	ID=Msa0522440-mRNA-1:exon:21693;Parent=Msa0522440-mRNA-1
chr3_4	five_prime_UTR	75530658	75530870	75530658	ID=Msa0522440-mRNA-1:five_prime_utr;Parent=Msa0522440-mRNA-1
chr3_4	CDS	75530565	75530657	75530565	ID=Msa0522440-mRNA-1:cds;Parent=Msa0522440-mRNA-1
chr3_4	CDS	75530208	75530442	75530208	ID=Msa0522440-mRNA-1:cds;Parent=Msa0522440-mRNA-1
chr3_4	CDS	75529740	75530110	75529740	ID=Msa0522440-mRNA-1:cds;Parent=Msa0522440-mRNA-1
chr3_4	CDS	75528922	75529578	75528922	ID=Msa0522440-mRNA-1:cds;Parent=Msa0522440-mRNA-1
chr3_4	three_prime_UTR	75528167	75528921	75528167	ID=Msa0522440-mRNA-1:three_prime_utr;Parent=Msa0522440-mRNA-1

Gene Sequence

>Msa0522440

ATGAGAGAGTGCATTTCAATCCACATTGGTCAAGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTTTACTGCCTTGAACACGGCATTCAGCCTGATGGCCAGATGCCTGGAGACAAGACCGTTGGAGGAGGAGATGATGCCTTCAACACGTTCTTCAGCGAAACCGGTGCCGGAAAGCATGTTCCACGCGCCGTCTTCGTAGATCTGGAACCAACCGTCATTGACGAAGTCAGAACCGGTGCTTACCGTCAACTCTTCCACCCTGAACAACTCATCAGCGGCAAAGAAGACGCTGCCAACAACTTCGCCCGTGGTCATTATACCATTGGGAAGGAGATTGTTGATCTATGCCTCGATAGGATCCGAAAGCTAGCAGATAACTGTACCGGTCTGCAAGGTTTCTTGGTGTTCAATGCTGTGGGTGGTGGAACCGGATCTGGTTTGGGTTCTCTTCTGTTGGAGCGTTTATCTGTTGATTATGGTAAAAAATCCAAGTTGGGTTTTACCGTTTATCCATCTCCCCAGGTTTCTACCTCTGTGGTTGAACCCTACAACAGTGTCCTTTCAACCCATTCCCTCCTTGAGCACACTGATGTTGCTGTTCTTCTCGACAACGAAGCTATCTATGACATATGCAGGCGTTCTCTTGATATTGAGCGTCCCACTTACACCAACCTCAATCGCCTTGTCTCTCAGGTGATTTCATCCCTCACTGCCTCTTTGAGGTTTGATGGAGCACTGAATGTTGATGTAACAGAGTTTCAAACCAACTTGGTTCCTTACCCTAGGATCCATTTCATGCTTTCCTCGTACGCACCTGTTATCTCTGCTGAGAAGGCTTACCATGAACAGCTTTCTGTTGCCGAGATCACCAACAGTGCTTTTGAACCTTCTTCCATGATGGCTAAGTGTGACCCTCGCCATGGAAAATACATGGCTTGTTGTTTGATGTACCGCGGTGATGTTGTGCCTAAGGACGTGAATGCTGCAGTTGCAACCATCAAGACCAAGAGGACCATTCAGTTTGTTGATTGGTGTCCAACTGGGTTCAAGTGCGGTATCAATTACCAGCCTCCAACTGTTGTTCCTGGTGGTGATCTTGCCAAGGTCCAAAGGGCTGTGTGCATGATCTCTAACTCTACCAGTGTTGCTGAGGTGTTTTCCAGGATTGATCATAAGTTTGATCTTATGTATGCCAAGCGTGCTTTTGTGCATTGGTATGTTGGTGAGGGTATGGAAGAAGGTGAGTTCTCTGAGGCTCGTGAGGATCTTGCTGCTCTCGAGAAGGATTATGAGGAGGTTGGTGCTGAGTCTGGTGATGGAGATGATGTTGATGGAGATGAGGATTACTAG

Protein sequence

>Msa0522440

MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGDGDDVDGDEDY*