Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522440 | XP_003603670.1 | 100.000 | 451 | 0 | 0 | 1 | 451 | 1 | 451 | 0.0 | 939 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522440 | sp|P46259|TBA1_PEA | 98.894 | 452 | 4 | 1 | 1 | 451 | 1 | 452 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522440 | G7J421 | 100.000 | 451 | 0 | 0 | 1 | 451 | 1 | 451 | 0.0 | 939 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384060 | Msa0522440 | 0.973986 | 2.289129e-137 | -8.615850e-47 |
| Msa0426840 | Msa0522440 | 0.801202 | 1.006224e-48 | -8.615850e-47 |
| Msa0478340 | Msa0522440 | 0.994756 | 6.293157e-210 | -8.615850e-47 |
| Msa0242820 | Msa0522440 | 0.808202 | 3.476940e-50 | -8.615850e-47 |
| Msa0269260 | Msa0522440 | 0.976243 | 1.871834e-141 | -8.615850e-47 |
| Msa0287660 | Msa0522440 | 0.801463 | 8.898439e-49 | -8.615850e-47 |
| Msa0522440 | Msa0667070 | 0.807656 | 4.544365e-50 | -8.615850e-47 |
| Msa0522440 | Msa1041160 | 0.817158 | 3.811769e-52 | -8.615850e-47 |
| Msa0522440 | Msa1127170 | 0.810503 | 1.115791e-50 | -8.615850e-47 |
| Msa0522440 | Msa1204600 | 0.804968 | 1.674297e-49 | -8.615850e-47 |
| Msa0522440 | Msa1204770 | 0.834694 | 2.584920e-56 | -8.615850e-47 |
| Msa0522440 | Msa1304320 | 0.831792 | 1.365506e-55 | -8.615850e-47 |
| Msa0522440 | Msa1329350 | 0.838310 | 3.103383e-57 | -8.615850e-47 |
| Msa0522440 | Msa1329580 | 0.831724 | 1.419284e-55 | -8.615850e-47 |
| Msa0522440 | Msa1362000 | 0.815172 | 1.059204e-51 | -8.615850e-47 |
| Msa0522440 | Msa1412620 | 0.804885 | 1.742641e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522440 | MtrunA17_Chr3g0140821 | 100.000 | 451 | 0 | 0 | 1 | 451 | 1 | 451 | 0.0 | 939 |
| Msa0522440 | MtrunA17_Chr4g0054511 | 97.118 | 451 | 13 | 0 | 1 | 451 | 1 | 451 | 0.0 | 914 |
| Msa0522440 | MtrunA17_Chr1g0206881 | 97.550 | 449 | 11 | 0 | 1 | 449 | 1 | 449 | 0.0 | 914 |
| Msa0522440 | MtrunA17_Chr8g0378821 | 92.874 | 435 | 31 | 0 | 1 | 435 | 1 | 435 | 0.0 | 834 |
| Msa0522440 | MtrunA17_Chr7g0253411 | 91.403 | 442 | 38 | 0 | 1 | 442 | 1 | 442 | 0.0 | 829 |
| Msa0522440 | MtrunA17_Chr6g0461281 | 83.628 | 452 | 69 | 3 | 1 | 451 | 1 | 448 | 0.0 | 774 |
| Msa0522440 | MtrunA17_Chr2g0300491 | 73.719 | 449 | 113 | 2 | 1 | 449 | 1 | 444 | 0.0 | 661 |
| Msa0522440 | MtrunA17_Chr2g0300671 | 74.603 | 441 | 107 | 2 | 1 | 441 | 1 | 436 | 0.0 | 658 |
| Msa0522440 | MtrunA17_Chr4g0051631 | 42.166 | 434 | 241 | 2 | 1 | 434 | 1 | 424 | 8.52e-126 | 372 |
| Msa0522440 | MtrunA17_Chr8g0393021 | 41.372 | 452 | 254 | 3 | 1 | 450 | 1 | 443 | 8.80e-126 | 372 |
| Msa0522440 | MtrunA17_Chr4g0008401 | 42.396 | 434 | 240 | 2 | 1 | 434 | 1 | 424 | 1.40e-124 | 369 |
| Msa0522440 | MtrunA17_Chr4g0008361 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 1.94e-124 | 369 |
| Msa0522440 | MtrunA17_Chr1g0203181 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 4.76e-124 | 368 |
| Msa0522440 | MtrunA17_Chr2g0292921 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 5.15e-124 | 367 |
| Msa0522440 | MtrunA17_Chr7g0255791 | 41.876 | 437 | 238 | 4 | 1 | 434 | 1 | 424 | 1.12e-123 | 367 |
| Msa0522440 | MtrunA17_Chr4g0007371 | 41.514 | 436 | 243 | 3 | 1 | 434 | 1 | 426 | 4.59e-123 | 365 |
| Msa0522440 | MtrunA17_Chr3g0142731 | 40.503 | 437 | 246 | 3 | 1 | 434 | 1 | 426 | 4.59e-123 | 365 |
| Msa0522440 | MtrunA17_Chr8g0386781 | 39.545 | 440 | 256 | 2 | 1 | 440 | 1 | 430 | 3.32e-122 | 363 |
| Msa0522440 | MtrunA17_Chr3g0109241 | 97.101 | 138 | 4 | 0 | 268 | 405 | 1 | 138 | 2.95e-96 | 286 |
| Msa0522440 | MtrunA17_Chr7g0275431 | 31.614 | 446 | 282 | 9 | 2 | 433 | 3 | 439 | 1.01e-76 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522440 | AT4G14960.2 | 97.105 | 449 | 13 | 0 | 1 | 449 | 1 | 449 | 0.0 | 913 |
| Msa0522440 | AT1G50010.1 | 96.882 | 449 | 14 | 0 | 1 | 449 | 1 | 449 | 0.0 | 911 |
| Msa0522440 | AT1G04820.1 | 96.882 | 449 | 14 | 0 | 1 | 449 | 1 | 449 | 0.0 | 911 |
| Msa0522440 | AT5G19780.1 | 93.793 | 435 | 27 | 0 | 1 | 435 | 1 | 435 | 0.0 | 839 |
| Msa0522440 | AT5G19770.1 | 93.793 | 435 | 27 | 0 | 1 | 435 | 1 | 435 | 0.0 | 839 |
| Msa0522440 | AT1G64740.1 | 90.345 | 435 | 42 | 0 | 1 | 435 | 1 | 435 | 0.0 | 813 |
| Msa0522440 | AT4G14960.1 | 94.103 | 407 | 17 | 1 | 1 | 407 | 1 | 400 | 0.0 | 800 |
| Msa0522440 | AT1G75780.1 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 1.61e-126 | 374 |
| Msa0522440 | AT5G62690.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 3.91e-125 | 371 |
| Msa0522440 | AT5G62700.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 3.91e-125 | 371 |
| Msa0522440 | AT1G20010.1 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 1.17e-124 | 370 |
| Msa0522440 | AT2G29550.1 | 41.270 | 441 | 249 | 2 | 1 | 441 | 1 | 431 | 1.89e-124 | 369 |
| Msa0522440 | AT5G12250.1 | 41.876 | 437 | 238 | 4 | 1 | 434 | 1 | 424 | 2.42e-124 | 369 |
| Msa0522440 | AT4G20890.1 | 41.935 | 434 | 242 | 2 | 1 | 434 | 1 | 424 | 5.54e-124 | 368 |
| Msa0522440 | AT5G23860.2 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 7.82e-124 | 368 |
| Msa0522440 | AT5G23860.1 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 7.82e-124 | 368 |
| Msa0522440 | AT5G44340.1 | 41.705 | 434 | 243 | 3 | 1 | 434 | 1 | 424 | 5.16e-122 | 363 |
| Msa0522440 | AT5G05620.1 | 32.287 | 446 | 279 | 9 | 2 | 433 | 3 | 439 | 5.71e-78 | 250 |
| Msa0522440 | AT3G61650.1 | 31.839 | 446 | 281 | 9 | 2 | 433 | 3 | 439 | 1.15e-76 | 247 |
Find 183 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAACATTTCTTCAACTTT+AGG | 0.184754 | 3_4:-75528166 | None:intergenic |
| CAAACATTTCTTCAACTTTA+GGG | 0.234030 | 3_4:-75528165 | None:intergenic |
| GAGCGTTTATCTGTTGATTA+TGG | 0.257743 | 3_4:-75529954 | Msa0522440:CDS |
| TACCGGTCTGCAAGGTTTCT+TGG | 0.265637 | 3_4:-75530030 | Msa0522440:CDS |
| ACTGCCTCTTTGAGGTTTGA+TGG | 0.279194 | 3_4:-75529541 | Msa0522440:CDS |
| AATGGTCCTCTTGGTCTTGA+TGG | 0.297222 | 3_4:+75529255 | None:intergenic |
| GTGAATCTCTCTTTCTTTGT+TGG | 0.305673 | 3_4:-75528761 | Msa0522440:three_prime_UTR |
| GGCGCGTGGAACATGCTTTC+CGG | 0.314398 | 3_4:+75530341 | None:intergenic |
| CATCCCTCACTGCCTCTTTG+AGG | 0.314555 | 3_4:-75529549 | Msa0522440:CDS |
| CAGCCTCCAACTGTTGTTCC+TGG | 0.314809 | 3_4:-75529184 | Msa0522440:CDS |
| TGGTGGAACCGGATCTGGTT+TGG | 0.315781 | 3_4:-75529991 | Msa0522440:CDS |
| GGTGGAACCGGATCTGGTTT+GGG | 0.317975 | 3_4:-75529990 | Msa0522440:CDS |
| TTTGTTGATTGGTGTCCAAC+TGG | 0.322748 | 3_4:-75529229 | Msa0522440:CDS |
| GAAACTAAATTTGAAATGTA+TGG | 0.336098 | 3_4:+75530817 | None:intergenic |
| TTGCCGCTGATGAGTTGTTC+AGG | 0.339225 | 3_4:+75530249 | None:intergenic |
| TACAGTTATCTGCTAGCTTT+CGG | 0.351362 | 3_4:+75530051 | None:intergenic |
| AACACGTTCTTCAGCGAAAC+CGG | 0.356725 | 3_4:-75530366 | Msa0522440:CDS |
| TTCATTGGTGCAGGATCGTT+TGG | 0.359828 | 3_4:-75528552 | Msa0522440:three_prime_UTR |
| TATTAGAAATTTAATCTTTG+TGG | 0.382619 | 3_4:-75528367 | Msa0522440:three_prime_UTR |
| CCTCAATCGCCTTGTCTCTC+AGG | 0.383066 | 3_4:-75529739 | Msa0522440:intron |
| TAAATTTGAAATGTATGGTT+AGG | 0.390192 | 3_4:+75530822 | None:intergenic |
| CTGCCTTGAACACGGCATTC+AGG | 0.391474 | 3_4:-75530564 | Msa0522440:intron |
| CGGTCTTGTCTCCAGGCATC+TGG | 0.396008 | 3_4:+75530412 | None:intergenic |
| TCTCCAGGCATCTGGCCATC+AGG | 0.405017 | 3_4:+75530420 | None:intergenic |
| TGGTTTGGGTTCTCTTCTGT+TGG | 0.405165 | 3_4:-75529976 | Msa0522440:CDS |
| GCCTTCTCAGCAGAGATAAC+AGG | 0.413340 | 3_4:+75529436 | None:intergenic |
| CAGCCTGATGGCCAGATGCC+TGG | 0.419485 | 3_4:-75530423 | Msa0522440:CDS |
| TCTTCTTCACAAAATTCAAA+AGG | 0.419881 | 3_4:-75530749 | Msa0522440:five_prime_UTR |
| CCTCCAACGGTCTTGTCTCC+AGG | 0.420149 | 3_4:+75530405 | None:intergenic |
| GTGGGTGGTGGAACCGGATC+TGG | 0.423776 | 3_4:-75529996 | Msa0522440:CDS |
| ATTAGAAATTTAATCTTTGT+GGG | 0.425010 | 3_4:-75528366 | Msa0522440:three_prime_UTR |
| TTACCTGAATGCCGTGTTCA+AGG | 0.426104 | 3_4:+75530561 | None:intergenic |
| TGAGGATTACTAGATCTTGC+AGG | 0.428042 | 3_4:-75528912 | Msa0522440:exon |
| GAGGAGGTTGGTGCTGAGTC+TGG | 0.430544 | 3_4:-75528959 | Msa0522440:CDS |
| GGACCATTCAGTTTGTTGAT+TGG | 0.433267 | 3_4:-75529240 | Msa0522440:CDS |
| TTCTTGGTGTTCAATGCTGT+GGG | 0.434584 | 3_4:-75530014 | Msa0522440:CDS |
| CGGCAACAGAAAGCTGTTCA+TGG | 0.435869 | 3_4:+75529410 | None:intergenic |
| TGGAACATGCTTTCCGGCAC+CGG | 0.438085 | 3_4:+75530347 | None:intergenic |
| TTACTATGTTTCATTGGTGC+AGG | 0.439459 | 3_4:-75528561 | Msa0522440:three_prime_UTR |
| AGATCATGCACACAGCCCTT+TGG | 0.440237 | 3_4:+75529143 | None:intergenic |
| GTGTTCAATGCTGTGGGTGG+TGG | 0.440766 | 3_4:-75530008 | Msa0522440:CDS |
| TGTTCATTACTATGTTTCAT+TGG | 0.442387 | 3_4:-75528567 | Msa0522440:three_prime_UTR |
| CAGTGTGCTCAAGGAGGGAA+TGG | 0.443924 | 3_4:+75529844 | None:intergenic |
| CTCCTCAACGGACATACATT+GGG | 0.446080 | 3_4:-75528314 | Msa0522440:three_prime_UTR |
| TTGGTATGTTGGTGAGGGTA+TGG | 0.447387 | 3_4:-75529038 | Msa0522440:CDS |
| GCGATTGAGGTTGGTGTAAG+TGG | 0.449517 | 3_4:+75529752 | None:intergenic |
| AATGCTGTGGGTGGTGGAAC+CGG | 0.451993 | 3_4:-75530002 | Msa0522440:CDS |
| ATCAAACTTATGATCAATCC+TGG | 0.453188 | 3_4:+75529090 | None:intergenic |
| GTGAAGAAGAATGGAAATGA+AGG | 0.453552 | 3_4:+75530762 | None:intergenic |
| GAAGAAAGAAGAAGAAGAAA+CGG | 0.457480 | 3_4:+75530695 | None:intergenic |
| GGTTGAAAGGACACTGTTGT+AGG | 0.458409 | 3_4:+75529866 | None:intergenic |
| ACGCGCCGTCTTCGTAGATC+TGG | 0.458537 | 3_4:-75530325 | Msa0522440:CDS |
| AACAAACTGAATGGTCCTCT+TGG | 0.460464 | 3_4:+75529246 | None:intergenic |
| CTTCTTCACAAAATTCAAAA+GGG | 0.461873 | 3_4:-75530748 | Msa0522440:five_prime_UTR |
| TCCAGGTCGGAAATGCCTGC+TGG | 0.462149 | 3_4:-75530595 | Msa0522440:CDS |
| TTCGCTGAAGAACGTGTTGA+AGG | 0.462873 | 3_4:+75530371 | None:intergenic |
| TGCCGCTGATGAGTTGTTCA+GGG | 0.465671 | 3_4:+75530250 | None:intergenic |
| GGCATTTCCGACCTGGATAC+CGG | 0.466918 | 3_4:+75530601 | None:intergenic |
| AATGAACACTCAAGCAAAAC+CGG | 0.470043 | 3_4:+75528582 | None:intergenic |
| AAAAGCACTGTTGGTGATCT+CGG | 0.470781 | 3_4:+75529390 | None:intergenic |
| CCCAGCAGGCATTTCCGACC+TGG | 0.472516 | 3_4:+75530594 | None:intergenic |
| TATTGGATGTGGATTTCCAT+TGG | 0.475872 | 3_4:-75528690 | Msa0522440:three_prime_UTR |
| GAAAGCATGAAATGGATCCT+AGG | 0.478017 | 3_4:+75529469 | None:intergenic |
| CCTGAGAGACAAGGCGATTG+AGG | 0.482372 | 3_4:+75529739 | None:intergenic |
| GCACACAGCCCTTTGGACCT+TGG | 0.485066 | 3_4:+75529150 | None:intergenic |
| ATGACCACGGGCGAAGTTGT+TGG | 0.486556 | 3_4:+75530215 | None:intergenic |
| CATTGGTCAAGCCGGTATCC+AGG | 0.488348 | 3_4:-75530612 | Msa0522440:CDS |
| CGTACGAGGAAAGCATGAAA+TGG | 0.493705 | 3_4:+75529461 | None:intergenic |
| GGTGATGGAGATGATGTTGA+TGG | 0.495196 | 3_4:-75528938 | Msa0522440:CDS |
| GTGAAAATAGTTGCATGAGT+TGG | 0.495985 | 3_4:+75528654 | None:intergenic |
| GTCATTGACGAAGTCAGAAC+CGG | 0.497007 | 3_4:-75530294 | Msa0522440:CDS |
| GAGGTAGAAACCTGGGGAGA+TGG | 0.498412 | 3_4:+75529900 | None:intergenic |
| GTGCATTGGTATGTTGGTGA+GGG | 0.501347 | 3_4:-75529043 | Msa0522440:CDS |
| TTTCTTGGTGTTCAATGCTG+TGG | 0.502010 | 3_4:-75530015 | Msa0522440:CDS |
| CTGACTTCGTCAATGACGGT+TGG | 0.504857 | 3_4:+75530300 | None:intergenic |
| TACCGTTTATCCATCTCCCC+AGG | 0.505210 | 3_4:-75529910 | Msa0522440:CDS |
| AAGAGAACCCAAACCAGATC+CGG | 0.505914 | 3_4:+75529983 | None:intergenic |
| TGCTCTCGAGAAGGATTATG+AGG | 0.507547 | 3_4:-75528978 | Msa0522440:CDS |
| ACACAGACGTATCAACAGTC+TGG | 0.508138 | 3_4:+75528263 | None:intergenic |
| TTCTTCAGCGAAACCGGTGC+CGG | 0.513072 | 3_4:-75530360 | Msa0522440:CDS |
| CCCTCGCCATGGAAAATACA+TGG | 0.514501 | 3_4:-75529338 | Msa0522440:CDS |
| TGTATGGTTAGGAATTAACT+AGG | 0.520240 | 3_4:+75530833 | None:intergenic |
| CCAATGCACAAAAGCACGCT+TGG | 0.520245 | 3_4:+75529057 | None:intergenic |
| AGAAGAAGAAGAAACGGAAG+AGG | 0.523866 | 3_4:+75530701 | None:intergenic |
| AAGCTATCTATGACATATGC+AGG | 0.524385 | 3_4:-75529797 | Msa0522440:CDS |
| GGTTCTGACTTCGTCAATGA+CGG | 0.528328 | 3_4:+75530296 | None:intergenic |
| AACCTGGGGAGATGGATAAA+CGG | 0.532949 | 3_4:+75529908 | None:intergenic |
| AGGGTCACACTTAGCCATCA+TGG | 0.532951 | 3_4:+75529357 | None:intergenic |
| AACAGAGTTTCAAACCAACT+TGG | 0.533094 | 3_4:-75529500 | Msa0522440:CDS |
| CACTTAGCCATCATGGAAGA+AGG | 0.536043 | 3_4:+75529364 | None:intergenic |
| AGAAGGTTCAAAAGCACTGT+TGG | 0.538677 | 3_4:+75529381 | None:intergenic |
| CCGCGGTGATGTTGTGCCTA+AGG | 0.540342 | 3_4:-75529299 | Msa0522440:CDS |
| GTGATCTTGCCAAGGTCCAA+AGG | 0.540632 | 3_4:-75529159 | Msa0522440:CDS |
| TCTCCTCAACGGACATACAT+TGG | 0.543476 | 3_4:-75528315 | Msa0522440:three_prime_UTR |
| ATGAAATGGATCCTAGGGTA+AGG | 0.544980 | 3_4:+75529475 | None:intergenic |
| CCAGGTCGGAAATGCCTGCT+GGG | 0.545543 | 3_4:-75530594 | Msa0522440:CDS |
| GTTCAGGGTGGAAGAGTTGA+CGG | 0.545624 | 3_4:+75530265 | None:intergenic |
| GTTGGTGAGGGTATGGAAGA+AGG | 0.547203 | 3_4:-75529031 | Msa0522440:CDS |
| TCCTGGTGGTGATCTTGCCA+AGG | 0.548720 | 3_4:-75529167 | Msa0522440:CDS |
| TTGTTGATTGGTGTCCAACT+GGG | 0.551076 | 3_4:-75529228 | Msa0522440:CDS |
| TCAATCCACATTGGTCAAGC+CGG | 0.555162 | 3_4:-75530620 | Msa0522440:CDS |
| ATAAACGGTAAAACCCAACT+TGG | 0.555240 | 3_4:+75529923 | None:intergenic |
| GTTGGTGCTGAGTCTGGTGA+TGG | 0.556011 | 3_4:-75528953 | Msa0522440:CDS |
| CCACCAGGAACAACAGTTGG+AGG | 0.556528 | 3_4:+75529181 | None:intergenic |
| CAGGAACAACAGTTGGAGGC+TGG | 0.557000 | 3_4:+75529185 | None:intergenic |
| CCTGGAGACAAGACCGTTGG+AGG | 0.557403 | 3_4:-75530405 | Msa0522440:CDS |
| TAACTAGGGTTAGCTCACCT+TGG | 0.557921 | 3_4:+75530848 | None:intergenic |
| TGTGCATTGGTATGTTGGTG+AGG | 0.557980 | 3_4:-75529044 | Msa0522440:CDS |
| ATAGTAAAAGCCCAATGCTA+AGG | 0.558028 | 3_4:+75528632 | None:intergenic |
| TCACCACCAGGAACAACAGT+TGG | 0.562091 | 3_4:+75529178 | None:intergenic |
| GGAGACAAGACCGTTGGAGG+AGG | 0.562701 | 3_4:-75530402 | Msa0522440:CDS |
| AAGAAGAAACGGAAGAGGAG+CGG | 0.563469 | 3_4:+75530706 | None:intergenic |
| CAGCAACATCAGTGTGCTCA+AGG | 0.564079 | 3_4:+75529835 | None:intergenic |
| CAAGGAGGGAATGGGTTGAA+AGG | 0.564699 | 3_4:+75529853 | None:intergenic |
| CACCAAGAAACCTTGCAGAC+CGG | 0.566087 | 3_4:+75530028 | None:intergenic |
| TATCAACAGTCTGGAGATTG+TGG | 0.566378 | 3_4:+75528272 | None:intergenic |
| TAACTCTACCAGTGTTGCTG+AGG | 0.566930 | 3_4:-75529119 | Msa0522440:CDS |
| GGCATCATCTCCTCCTCCAA+CGG | 0.567140 | 3_4:+75530392 | None:intergenic |
| TTTGTGTCCTTCAGTTGGGA+AGG | 0.568538 | 3_4:-75530102 | Msa0522440:intron |
| AAAGCATGAAATGGATCCTA+GGG | 0.569228 | 3_4:+75529470 | None:intergenic |
| ACACCAATCAACAAACTGAA+TGG | 0.571183 | 3_4:+75529237 | None:intergenic |
| ATACCGCACTTGAACCCAGT+TGG | 0.571477 | 3_4:+75529214 | None:intergenic |
| GTTGAAAGGACACTGTTGTA+GGG | 0.573119 | 3_4:+75529867 | None:intergenic |
| GGAAAACACCTCAGCAACAC+TGG | 0.575051 | 3_4:+75529111 | None:intergenic |
| AGAGACAAGGCGATTGAGGT+TGG | 0.575918 | 3_4:+75529743 | None:intergenic |
| TCAACAATGACTTGAAAACT+AGG | 0.577097 | 3_4:-75528224 | Msa0522440:three_prime_UTR |
| ACCTGTTATCTCTGCTGAGA+AGG | 0.577342 | 3_4:-75529437 | Msa0522440:CDS |
| AAACCTCAAAGAGGCAGTGA+GGG | 0.578416 | 3_4:+75529546 | None:intergenic |
| TGAGTTCTCTGAGGCTCGTG+AGG | 0.578430 | 3_4:-75529008 | Msa0522440:CDS |
| AACCACAGAGGTAGAAACCT+GGG | 0.579213 | 3_4:+75529893 | None:intergenic |
| ATGCCTGGAGACAAGACCGT+TGG | 0.583327 | 3_4:-75530408 | Msa0522440:CDS |
| GAGAAGGATTATGAGGAGGT+TGG | 0.588091 | 3_4:-75528971 | Msa0522440:CDS |
| GAACTTTACTGCCTTGAACA+CGG | 0.589043 | 3_4:-75530572 | Msa0522440:CDS |
| TGATCTTGCCAAGGTCCAAA+GGG | 0.589383 | 3_4:-75529158 | Msa0522440:CDS |
| AACATCAGTGTGCTCAAGGA+GGG | 0.590528 | 3_4:+75529839 | None:intergenic |
| AGTGTGCTCAAGGAGGGAAT+GGG | 0.591430 | 3_4:+75529845 | None:intergenic |
| TCCCCAGGTTTCTACCTCTG+TGG | 0.593813 | 3_4:-75529895 | Msa0522440:CDS |
| CGATTGAGGTTGGTGTAAGT+GGG | 0.594949 | 3_4:+75529753 | None:intergenic |
| CCAACTTGGTTCCTTACCCT+AGG | 0.596446 | 3_4:-75529486 | Msa0522440:CDS |
| GAAGAGTTGACGGTAAGCAC+CGG | 0.597156 | 3_4:+75530275 | None:intergenic |
| CAACCACAGAGGTAGAAACC+TGG | 0.597626 | 3_4:+75529892 | None:intergenic |
| GTATGGTTAGGAATTAACTA+GGG | 0.599143 | 3_4:+75530834 | None:intergenic |
| AGATCTACGAAGACGGCGCG+TGG | 0.600243 | 3_4:+75530327 | None:intergenic |
| AAGGCAGTAAAGTTCCCAGC+AGG | 0.601634 | 3_4:+75530580 | None:intergenic |
| GGGAAAATTTGAATGAACAA+AGG | 0.602244 | 3_4:+75530664 | None:intergenic |
| TTGTTGATCTATGCCTCGAT+AGG | 0.603776 | 3_4:-75530076 | Msa0522440:CDS |
| AAGCTAGCAGATAACTGTAC+CGG | 0.604721 | 3_4:-75530047 | Msa0522440:CDS |
| GACTTCTCTGTTCTCCTCAA+CGG | 0.605252 | 3_4:-75528326 | Msa0522440:three_prime_UTR |
| CCTCCAACTGTTGTTCCTGG+TGG | 0.605513 | 3_4:-75529181 | Msa0522440:CDS |
| TGGATAACACAATCTGCCAA+TGG | 0.606869 | 3_4:+75528674 | None:intergenic |
| TTGGTGTTCAATGCTGTGGG+TGG | 0.611760 | 3_4:-75530011 | Msa0522440:CDS |
| GAAGAATGGAAATGAAGGAG+AGG | 0.611891 | 3_4:+75530767 | None:intergenic |
| GATAACTGTACCGGTCTGCA+AGG | 0.617527 | 3_4:-75530038 | Msa0522440:CDS |
| AGATGATGTTGATGGAGATG+AGG | 0.621023 | 3_4:-75528930 | Msa0522440:CDS |
| GGATCTTGCTGCTCTCGAGA+AGG | 0.621052 | 3_4:-75528987 | Msa0522440:CDS |
| GCTAAGTGTGACCCTCGCCA+TGG | 0.621505 | 3_4:-75529349 | Msa0522440:CDS |
| ATCCCAATGTATGTCCGTTG+AGG | 0.628553 | 3_4:+75528312 | None:intergenic |
| AGAGATAACAGGTGCGTACG+AGG | 0.631288 | 3_4:+75529447 | None:intergenic |
| ACTGCAGCATTCACGTCCTT+AGG | 0.632837 | 3_4:+75529283 | None:intergenic |
| CCTAGGGTAAGGAACCAAGT+TGG | 0.636144 | 3_4:+75529486 | None:intergenic |
| CTAGCTTTCGGATCCTATCG+AGG | 0.641945 | 3_4:+75530063 | None:intergenic |
| TGCTCCATCAAACCTCAAAG+AGG | 0.642331 | 3_4:+75529537 | None:intergenic |
| CGTACTGGTATAATGACCAC+GGG | 0.644337 | 3_4:+75530203 | None:intergenic |
| GCTGCCAACAACTTCGCCCG+TGG | 0.644824 | 3_4:-75530219 | Msa0522440:CDS |
| GGTCAAGCCGGTATCCAGGT+CGG | 0.648566 | 3_4:-75530608 | Msa0522440:CDS |
| CACCCTGAACAACTCATCAG+CGG | 0.650288 | 3_4:-75530252 | Msa0522440:CDS |
| TGTCCAACTGGGTTCAAGTG+CGG | 0.653024 | 3_4:-75529217 | Msa0522440:CDS |
| CAACATCAGTGTGCTCAAGG+AGG | 0.655233 | 3_4:+75529838 | None:intergenic |
| TTGCAACCATCAAGACCAAG+AGG | 0.655579 | 3_4:-75529261 | Msa0522440:CDS |
| TGGTTCCAGATCTACGAAGA+CGG | 0.658526 | 3_4:+75530320 | None:intergenic |
| CGCTGATGAGTTGTTCAGGG+TGG | 0.660350 | 3_4:+75530253 | None:intergenic |
| CAAACCTCAAAGAGGCAGTG+AGG | 0.663855 | 3_4:+75529545 | None:intergenic |
| ACGTACTGGTATAATGACCA+CGG | 0.670676 | 3_4:+75530202 | None:intergenic |
| ACCTTGGCAAGATCACCACC+AGG | 0.672683 | 3_4:+75529166 | None:intergenic |
| GGATACCGGCTTGACCAATG+TGG | 0.673011 | 3_4:+75530615 | None:intergenic |
| GAGTGCATTTCAATCCACAT+TGG | 0.673256 | 3_4:-75530629 | Msa0522440:CDS |
| AAGTATATACCTGAGAGACA+AGG | 0.681840 | 3_4:+75529730 | None:intergenic |
| TCTCGAGAAGGATTATGAGG+AGG | 0.693923 | 3_4:-75528975 | Msa0522440:CDS |
| ACCACAGAGGTAGAAACCTG+GGG | 0.712460 | 3_4:+75529894 | None:intergenic |
| GCTTGTTGTTTGATGTACCG+CGG | 0.713100 | 3_4:-75529316 | Msa0522440:CDS |
| GGAAGAAGGTGAGTTCTCTG+AGG | 0.713464 | 3_4:-75529017 | Msa0522440:CDS |
| GTTGTAGGGTTCAACCACAG+AGG | 0.742914 | 3_4:+75529881 | None:intergenic |
| CCTTAGGCACAACATCACCG+CGG | 0.844586 | 3_4:+75529299 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATCTAGAATTAAAAAAAAA+TGG | + | chr3_4:75528500-75528519 | None:intergenic | 15.0% |
| !!! | TATTAGTTTTAAACTTTCAT+TGG | - | chr3_4:75530288-75530307 | Msa0522440:CDS | 15.0% |
| !! | TTTCAAAAATTAGATAAAAC+CGG | - | chr3_4:75530414-75530433 | Msa0522440:CDS | 15.0% |
| !! | TATTAGAAATTTAATCTTTG+TGG | - | chr3_4:75530648-75530667 | Msa0522440:exon | 15.0% |
| !! | ATTAGAAATTTAATCTTTGT+GGG | - | chr3_4:75530649-75530668 | Msa0522440:exon | 15.0% |
| !!! | TAAATTTGAAATGTATGGTT+AGG | + | chr3_4:75528196-75528215 | None:intergenic | 20.0% |
| !!! | GAAACTAAATTTGAAATGTA+TGG | + | chr3_4:75528201-75528220 | None:intergenic | 20.0% |
| !! | AATTATGTAGCAAATATTTG+AGG | - | chr3_4:75529357-75529376 | Msa0522440:CDS | 20.0% |
| !!! | CTTTAATCTACATTTTGTTT+CGG | - | chr3_4:75530232-75530251 | Msa0522440:CDS | 20.0% |
| !! | TTGAATTTTGTGAAGAAGAA+TGG | + | chr3_4:75528265-75528284 | None:intergenic | 25.0% |
| ! | TCTTCTTCACAAAATTCAAA+AGG | - | chr3_4:75528266-75528285 | Msa0522440:three_prime_UTR | 25.0% |
| ! | CTTCTTCACAAAATTCAAAA+GGG | - | chr3_4:75528267-75528286 | Msa0522440:three_prime_UTR | 25.0% |
| ! | TAATTCTAGATCCCAAATTT+AGG | - | chr3_4:75528508-75528527 | Msa0522440:three_prime_UTR | 25.0% |
| ! | AATTCTAGATCCCAAATTTA+GGG | - | chr3_4:75528509-75528528 | Msa0522440:three_prime_UTR | 25.0% |
| ! | AATGATGAAACCCTAAATTT+GGG | + | chr3_4:75528522-75528541 | None:intergenic | 25.0% |
| ! | AAATGATGAAACCCTAAATT+TGG | + | chr3_4:75528523-75528542 | None:intergenic | 25.0% |
| ! | TTTCAATTGATTAATCGATG+CGG | - | chr3_4:75528559-75528578 | Msa0522440:three_prime_UTR | 25.0% |
| ! | TTATGGTAAAAAATCCAAGT+TGG | - | chr3_4:75529078-75529097 | Msa0522440:CDS | 25.0% |
| ! | TATGGTAAAAAATCCAAGTT+GGG | - | chr3_4:75529079-75529098 | Msa0522440:CDS | 25.0% |
| ! | TAACAACCAAATATAGAGAA+TGG | - | chr3_4:75529307-75529326 | Msa0522440:CDS | 25.0% |
| !!! | TGCTGTTTCATTTTAATTTC+TGG | - | chr3_4:75530148-75530167 | Msa0522440:intron | 25.0% |
| !!! | GCTGTTTCATTTTAATTTCT+GGG | - | chr3_4:75530149-75530168 | Msa0522440:intron | 25.0% |
| ! | TGTTCATTACTATGTTTCAT+TGG | - | chr3_4:75530448-75530467 | Msa0522440:intron | 25.0% |
| !! | GCTTTTTAATGTTTTCTTTG+TGG | - | chr3_4:75530576-75530595 | Msa0522440:CDS | 25.0% |
| GTATGGTTAGGAATTAACTA+GGG | + | chr3_4:75528184-75528203 | None:intergenic | 30.0% | |
| TGTATGGTTAGGAATTAACT+AGG | + | chr3_4:75528185-75528204 | None:intergenic | 30.0% | |
| GAAGAAAGAAGAAGAAGAAA+CGG | + | chr3_4:75528323-75528342 | None:intergenic | 30.0% | |
| GGGAAAATTTGAATGAACAA+AGG | + | chr3_4:75528354-75528373 | None:intergenic | 30.0% | |
| GGCATTCAGGTAATTAATTA+GGG | - | chr3_4:75528464-75528483 | Msa0522440:three_prime_UTR | 30.0% | |
| CAAGATCCATTCTCTATATT+TGG | + | chr3_4:75529316-75529335 | None:intergenic | 30.0% | |
| ! | TTTGTTTGATGTGCTTTTAC+AGG | - | chr3_4:75529437-75529456 | Msa0522440:CDS | 30.0% |
| ATCAAACTTATGATCAATCC+TGG | + | chr3_4:75529928-75529947 | None:intergenic | 30.0% | |
| ! | TGGATGAACGTTTTCTTTAT+TGG | - | chr3_4:75530308-75530327 | Msa0522440:CDS | 30.0% |
| ! | AACGTTTTCTTTATTGGATG+TGG | - | chr3_4:75530314-75530333 | Msa0522440:CDS | 30.0% |
| ! | AACTATTTTCACCTTAGCAT+TGG | - | chr3_4:75530372-75530391 | Msa0522440:CDS | 30.0% |
| ! | ACTATTTTCACCTTAGCATT+GGG | - | chr3_4:75530373-75530392 | Msa0522440:CDS | 30.0% |
| ! | TTATAAGTGTTTTGTGAGCA+AGG | - | chr3_4:75530620-75530639 | Msa0522440:CDS | 30.0% |
| TCAACAATGACTTGAAAACT+AGG | - | chr3_4:75530791-75530810 | Msa0522440:five_prime_UTR | 30.0% | |
| GTGAAGAAGAATGGAAATGA+AGG | + | chr3_4:75528256-75528275 | None:intergenic | 35.0% | |
| ! | AATGCACTCTCTCATTTTCT+CGG | + | chr3_4:75528375-75528394 | None:intergenic | 35.0% |
| CGGCATTCAGGTAATTAATT+AGG | - | chr3_4:75528463-75528482 | Msa0522440:three_prime_UTR | 35.0% | |
| ATTGAATGACGAAAACGTAC+TGG | + | chr3_4:75528830-75528849 | None:intergenic | 35.0% | |
| ! | TATGATTTGTGTCCTTCAGT+TGG | - | chr3_4:75528908-75528927 | Msa0522440:exon | 35.0% |
| ! | ATGATTTGTGTCCTTCAGTT+GGG | - | chr3_4:75528909-75528928 | Msa0522440:exon | 35.0% |
| !! | TACAGTTATCTGCTAGCTTT+CGG | + | chr3_4:75528967-75528986 | None:intergenic | 35.0% |
| ! | GAGCGTTTATCTGTTGATTA+TGG | - | chr3_4:75529061-75529080 | Msa0522440:CDS | 35.0% |
| ATAAACGGTAAAACCCAACT+TGG | + | chr3_4:75529095-75529114 | None:intergenic | 35.0% | |
| AAGCTATCTATGACATATGC+AGG | - | chr3_4:75529218-75529237 | Msa0522440:CDS | 35.0% | |
| AAGTATATACCTGAGAGACA+AGG | + | chr3_4:75529288-75529307 | None:intergenic | 35.0% | |
| GATCTTGAAATGTTTGCGTT+TGG | - | chr3_4:75529329-75529348 | Msa0522440:CDS | 35.0% | |
| AACAGAGTTTCAAACCAACT+TGG | - | chr3_4:75529515-75529534 | Msa0522440:CDS | 35.0% | |
| AAAGCATGAAATGGATCCTA+GGG | + | chr3_4:75529548-75529567 | None:intergenic | 35.0% | |
| ! | TTTTGAACCTTCTTCCATGA+TGG | - | chr3_4:75529644-75529663 | Msa0522440:intron | 35.0% |
| ! | AACAAGCCATGTATTTTCCA+TGG | + | chr3_4:75529686-75529705 | None:intergenic | 35.0% |
| ACACCAATCAACAAACTGAA+TGG | + | chr3_4:75529781-75529800 | None:intergenic | 35.0% | |
| GTGAATCTCTCTTTCTTTGT+TGG | - | chr3_4:75530254-75530273 | Msa0522440:CDS | 35.0% | |
| TATTGGATGTGGATTTCCAT+TGG | - | chr3_4:75530325-75530344 | Msa0522440:CDS | 35.0% | |
| GTGAAAATAGTTGCATGAGT+TGG | + | chr3_4:75530364-75530383 | None:intergenic | 35.0% | |
| ATAGTAAAAGCCCAATGCTA+AGG | + | chr3_4:75530386-75530405 | None:intergenic | 35.0% | |
| AATGAACACTCAAGCAAAAC+CGG | + | chr3_4:75530436-75530455 | None:intergenic | 35.0% | |
| TTACTATGTTTCATTGGTGC+AGG | - | chr3_4:75530454-75530473 | Msa0522440:intron | 35.0% | |
| GAAGAATGGAAATGAAGGAG+AGG | + | chr3_4:75528251-75528270 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAACGGAAG+AGG | + | chr3_4:75528317-75528336 | None:intergenic | 40.0% | |
| ! | ATGCACTCTCTCATTTTCTC+GGG | + | chr3_4:75528374-75528393 | None:intergenic | 40.0% |
| GAGTGCATTTCAATCCACAT+TGG | - | chr3_4:75528386-75528405 | Msa0522440:three_prime_UTR | 40.0% | |
| GAACTTTACTGCCTTGAACA+CGG | - | chr3_4:75528443-75528462 | Msa0522440:three_prime_UTR | 40.0% | |
| ! | ACGTACTGGTATAATGACCA+CGG | + | chr3_4:75528816-75528835 | None:intergenic | 40.0% |
| TTGTTGATCTATGCCTCGAT+AGG | - | chr3_4:75528939-75528958 | Msa0522440:CDS | 40.0% | |
| AAGCTAGCAGATAACTGTAC+CGG | - | chr3_4:75528968-75528987 | Msa0522440:CDS | 40.0% | |
| !! | TTTCTTGGTGTTCAATGCTG+TGG | - | chr3_4:75529000-75529019 | Msa0522440:CDS | 40.0% |
| !! | TTCTTGGTGTTCAATGCTGT+GGG | - | chr3_4:75529001-75529020 | Msa0522440:CDS | 40.0% |
| GTTGAAAGGACACTGTTGTA+GGG | + | chr3_4:75529151-75529170 | None:intergenic | 40.0% | |
| ATGAAATGGATCCTAGGGTA+AGG | + | chr3_4:75529543-75529562 | None:intergenic | 40.0% | |
| ! | GAAAGCATGAAATGGATCCT+AGG | + | chr3_4:75529549-75529568 | None:intergenic | 40.0% |
| !! | AAAAGCACTGTTGGTGATCT+CGG | + | chr3_4:75529628-75529647 | None:intergenic | 40.0% |
| !! | AGAAGGTTCAAAAGCACTGT+TGG | + | chr3_4:75529637-75529656 | None:intergenic | 40.0% |
| AACAAACTGAATGGTCCTCT+TGG | + | chr3_4:75529772-75529791 | None:intergenic | 40.0% | |
| !! | GGACCATTCAGTTTGTTGAT+TGG | - | chr3_4:75529775-75529794 | Msa0522440:CDS | 40.0% |
| ! | TTTGTTGATTGGTGTCCAAC+TGG | - | chr3_4:75529786-75529805 | Msa0522440:CDS | 40.0% |
| ! | TTGTTGATTGGTGTCCAACT+GGG | - | chr3_4:75529787-75529806 | Msa0522440:CDS | 40.0% |
| !! | GCTTTTGTGCATTGGTATGT+TGG | - | chr3_4:75529966-75529985 | Msa0522440:CDS | 40.0% |
| ! | AGATGATGTTGATGGAGATG+AGG | - | chr3_4:75530085-75530104 | Msa0522440:CDS | 40.0% |
| TGAGGATTACTAGATCTTGC+AGG | - | chr3_4:75530103-75530122 | Msa0522440:intron | 40.0% | |
| TGGATAACACAATCTGCCAA+TGG | + | chr3_4:75530344-75530363 | None:intergenic | 40.0% | |
| ! | GGACATACATTGGGATTTTC+TGG | - | chr3_4:75530710-75530729 | Msa0522440:five_prime_UTR | 40.0% |
| TATCAACAGTCTGGAGATTG+TGG | + | chr3_4:75530746-75530765 | None:intergenic | 40.0% | |
| !! | TAACTAGGGTTAGCTCACCT+TGG | + | chr3_4:75528170-75528189 | None:intergenic | 45.0% |
| AAGAAGAAACGGAAGAGGAG+CGG | + | chr3_4:75528312-75528331 | None:intergenic | 45.0% | |
| TCAATCCACATTGGTCAAGC+CGG | - | chr3_4:75528395-75528414 | Msa0522440:three_prime_UTR | 45.0% | |
| TTACCTGAATGCCGTGTTCA+AGG | + | chr3_4:75528457-75528476 | None:intergenic | 45.0% | |
| !!! | GGTGTTGTTTTTCAGCCTGA+TGG | - | chr3_4:75528580-75528599 | Msa0522440:three_prime_UTR | 45.0% |
| TTCGCTGAAGAACGTGTTGA+AGG | + | chr3_4:75528647-75528666 | None:intergenic | 45.0% | |
| AACACGTTCTTCAGCGAAAC+CGG | - | chr3_4:75528649-75528668 | Msa0522440:three_prime_UTR | 45.0% | |
| TGGTTCCAGATCTACGAAGA+CGG | + | chr3_4:75528698-75528717 | None:intergenic | 45.0% | |
| ! | GGTTCTGACTTCGTCAATGA+CGG | + | chr3_4:75528722-75528741 | None:intergenic | 45.0% |
| GTCATTGACGAAGTCAGAAC+CGG | - | chr3_4:75528721-75528740 | Msa0522440:three_prime_UTR | 45.0% | |
| ! | CGTACTGGTATAATGACCAC+GGG | + | chr3_4:75528815-75528834 | None:intergenic | 45.0% |
| TTTGTGTCCTTCAGTTGGGA+AGG | - | chr3_4:75528913-75528932 | Msa0522440:exon | 45.0% | |
| ACAATCTCCTTCCCAACTGA+AGG | + | chr3_4:75528923-75528942 | None:intergenic | 45.0% | |
| AAGAGAACCCAAACCAGATC+CGG | + | chr3_4:75529035-75529054 | None:intergenic | 45.0% | |
| ! | TGGTTTGGGTTCTCTTCTGT+TGG | - | chr3_4:75529039-75529058 | Msa0522440:CDS | 45.0% |
| AACCTGGGGAGATGGATAAA+CGG | + | chr3_4:75529110-75529129 | None:intergenic | 45.0% | |
| AACCACAGAGGTAGAAACCT+GGG | + | chr3_4:75529125-75529144 | None:intergenic | 45.0% | |
| GGTTGAAAGGACACTGTTGT+AGG | + | chr3_4:75529152-75529171 | None:intergenic | 45.0% | |
| AACATCAGTGTGCTCAAGGA+GGG | + | chr3_4:75529179-75529198 | None:intergenic | 45.0% | |
| !! | CGATTGAGGTTGGTGTAAGT+GGG | + | chr3_4:75529265-75529284 | None:intergenic | 45.0% |
| AAACCTCAAAGAGGCAGTGA+GGG | + | chr3_4:75529472-75529491 | None:intergenic | 45.0% | |
| !! | ACTGCCTCTTTGAGGTTTGA+TGG | - | chr3_4:75529474-75529493 | Msa0522440:CDS | 45.0% |
| TGCTCCATCAAACCTCAAAG+AGG | + | chr3_4:75529481-75529500 | None:intergenic | 45.0% | |
| ! | CGTACGAGGAAAGCATGAAA+TGG | + | chr3_4:75529557-75529576 | None:intergenic | 45.0% |
| ACCTGTTATCTCTGCTGAGA+AGG | - | chr3_4:75529578-75529597 | Msa0522440:intron | 45.0% | |
| CACTTAGCCATCATGGAAGA+AGG | + | chr3_4:75529654-75529673 | None:intergenic | 45.0% | |
| ! | CCATGTATTTTCCATGGCGA+GGG | + | chr3_4:75529680-75529699 | None:intergenic | 45.0% |
| !! | GCTTGTTGTTTGATGTACCG+CGG | - | chr3_4:75529699-75529718 | Msa0522440:intron | 45.0% |
| TTGCAACCATCAAGACCAAG+AGG | - | chr3_4:75529754-75529773 | Msa0522440:CDS | 45.0% | |
| !! | AATGGTCCTCTTGGTCTTGA+TGG | + | chr3_4:75529763-75529782 | None:intergenic | 45.0% |
| TGATCTTGCCAAGGTCCAAA+GGG | - | chr3_4:75529857-75529876 | Msa0522440:CDS | 45.0% | |
| ! | TAACTCTACCAGTGTTGCTG+AGG | - | chr3_4:75529896-75529915 | Msa0522440:CDS | 45.0% |
| ! | TGTGCATTGGTATGTTGGTG+AGG | - | chr3_4:75529971-75529990 | Msa0522440:CDS | 45.0% |
| ! | GTGCATTGGTATGTTGGTGA+GGG | - | chr3_4:75529972-75529991 | Msa0522440:CDS | 45.0% |
| ! | TTGGTATGTTGGTGAGGGTA+TGG | - | chr3_4:75529977-75529996 | Msa0522440:CDS | 45.0% |
| TGCTCTCGAGAAGGATTATG+AGG | - | chr3_4:75530037-75530056 | Msa0522440:CDS | 45.0% | |
| TCTCGAGAAGGATTATGAGG+AGG | - | chr3_4:75530040-75530059 | Msa0522440:CDS | 45.0% | |
| GAGAAGGATTATGAGGAGGT+TGG | - | chr3_4:75530044-75530063 | Msa0522440:CDS | 45.0% | |
| !! | GGTGATGGAGATGATGTTGA+TGG | - | chr3_4:75530077-75530096 | Msa0522440:CDS | 45.0% |
| TTCATTGGTGCAGGATCGTT+TGG | - | chr3_4:75530463-75530482 | Msa0522440:intron | 45.0% | |
| GACTTCTCTGTTCTCCTCAA+CGG | - | chr3_4:75530689-75530708 | Msa0522440:five_prime_UTR | 45.0% | |
| TCTCCTCAACGGACATACAT+TGG | - | chr3_4:75530700-75530719 | Msa0522440:five_prime_UTR | 45.0% | |
| CTCCTCAACGGACATACATT+GGG | - | chr3_4:75530701-75530720 | Msa0522440:five_prime_UTR | 45.0% | |
| ATCCCAATGTATGTCCGTTG+AGG | + | chr3_4:75530706-75530725 | None:intergenic | 45.0% | |
| ACACAGACGTATCAACAGTC+TGG | + | chr3_4:75530755-75530774 | None:intergenic | 45.0% | |
| AAGGCAGTAAAGTTCCCAGC+AGG | + | chr3_4:75528438-75528457 | None:intergenic | 50.0% | |
| CTGACTTCGTCAATGACGGT+TGG | + | chr3_4:75528718-75528737 | None:intergenic | 50.0% | |
| GAAGAGTTGACGGTAAGCAC+CGG | + | chr3_4:75528743-75528762 | None:intergenic | 50.0% | |
| GTTCAGGGTGGAAGAGTTGA+CGG | + | chr3_4:75528753-75528772 | None:intergenic | 50.0% | |
| CACCCTGAACAACTCATCAG+CGG | - | chr3_4:75528763-75528782 | Msa0522440:three_prime_UTR | 50.0% | |
| TGCCGCTGATGAGTTGTTCA+GGG | + | chr3_4:75528768-75528787 | None:intergenic | 50.0% | |
| TTGCCGCTGATGAGTTGTTC+AGG | + | chr3_4:75528769-75528788 | None:intergenic | 50.0% | |
| ! | CTAGCTTTCGGATCCTATCG+AGG | + | chr3_4:75528955-75528974 | None:intergenic | 50.0% |
| ! | GATAACTGTACCGGTCTGCA+AGG | - | chr3_4:75528977-75528996 | Msa0522440:CDS | 50.0% |
| TACCGGTCTGCAAGGTTTCT+TGG | - | chr3_4:75528985-75529004 | Msa0522440:CDS | 50.0% | |
| CACCAAGAAACCTTGCAGAC+CGG | + | chr3_4:75528990-75529009 | None:intergenic | 50.0% | |
| ! | TTGGTGTTCAATGCTGTGGG+TGG | - | chr3_4:75529004-75529023 | Msa0522440:CDS | 50.0% |
| TACCGTTTATCCATCTCCCC+AGG | - | chr3_4:75529105-75529124 | Msa0522440:CDS | 50.0% | |
| ACCACAGAGGTAGAAACCTG+GGG | + | chr3_4:75529124-75529143 | None:intergenic | 50.0% | |
| CAACCACAGAGGTAGAAACC+TGG | + | chr3_4:75529126-75529145 | None:intergenic | 50.0% | |
| GTTGTAGGGTTCAACCACAG+AGG | + | chr3_4:75529137-75529156 | None:intergenic | 50.0% | |
| !! | CAAGGAGGGAATGGGTTGAA+AGG | + | chr3_4:75529165-75529184 | None:intergenic | 50.0% |
| AGTGTGCTCAAGGAGGGAAT+GGG | + | chr3_4:75529173-75529192 | None:intergenic | 50.0% | |
| CAACATCAGTGTGCTCAAGG+AGG | + | chr3_4:75529180-75529199 | None:intergenic | 50.0% | |
| CAGCAACATCAGTGTGCTCA+AGG | + | chr3_4:75529183-75529202 | None:intergenic | 50.0% | |
| !! | GCGATTGAGGTTGGTGTAAG+TGG | + | chr3_4:75529266-75529285 | None:intergenic | 50.0% |
| AGAGACAAGGCGATTGAGGT+TGG | + | chr3_4:75529275-75529294 | None:intergenic | 50.0% | |
| CAAACCTCAAAGAGGCAGTG+AGG | + | chr3_4:75529473-75529492 | None:intergenic | 50.0% | |
| CCTAGGGTAAGGAACCAAGT+TGG | + | chr3_4:75529532-75529551 | None:intergenic | 50.0% | |
| CCAACTTGGTTCCTTACCCT+AGG | - | chr3_4:75529529-75529548 | Msa0522440:CDS | 50.0% | |
| AGAGATAACAGGTGCGTACG+AGG | + | chr3_4:75529571-75529590 | None:intergenic | 50.0% | |
| GCCTTCTCAGCAGAGATAAC+AGG | + | chr3_4:75529582-75529601 | None:intergenic | 50.0% | |
| CGGCAACAGAAAGCTGTTCA+TGG | + | chr3_4:75529608-75529627 | None:intergenic | 50.0% | |
| AGGGTCACACTTAGCCATCA+TGG | + | chr3_4:75529661-75529680 | None:intergenic | 50.0% | |
| CCCTCGCCATGGAAAATACA+TGG | - | chr3_4:75529677-75529696 | Msa0522440:intron | 50.0% | |
| ! | GCCATGTATTTTCCATGGCG+AGG | + | chr3_4:75529681-75529700 | None:intergenic | 50.0% |
| ACTGCAGCATTCACGTCCTT+AGG | + | chr3_4:75529735-75529754 | None:intergenic | 50.0% | |
| TGTCCAACTGGGTTCAAGTG+CGG | - | chr3_4:75529798-75529817 | Msa0522440:CDS | 50.0% | |
| ATACCGCACTTGAACCCAGT+TGG | + | chr3_4:75529804-75529823 | None:intergenic | 50.0% | |
| TCACCACCAGGAACAACAGT+TGG | + | chr3_4:75529840-75529859 | None:intergenic | 50.0% | |
| GTGATCTTGCCAAGGTCCAA+AGG | - | chr3_4:75529856-75529875 | Msa0522440:CDS | 50.0% | |
| AGATCATGCACACAGCCCTT+TGG | + | chr3_4:75529875-75529894 | None:intergenic | 50.0% | |
| GGAAAACACCTCAGCAACAC+TGG | + | chr3_4:75529907-75529926 | None:intergenic | 50.0% | |
| !! | GTGTTGCTGAGGTGTTTTCC+AGG | - | chr3_4:75529907-75529926 | Msa0522440:CDS | 50.0% |
| ! | CCAATGCACAAAAGCACGCT+TGG | + | chr3_4:75529961-75529980 | None:intergenic | 50.0% |
| ! | CCAAGCGTGCTTTTGTGCAT+TGG | - | chr3_4:75529958-75529977 | Msa0522440:CDS | 50.0% |
| ! | GTTGGTGAGGGTATGGAAGA+AGG | - | chr3_4:75529984-75530003 | Msa0522440:CDS | 50.0% |
| GGAAGAAGGTGAGTTCTCTG+AGG | - | chr3_4:75529998-75530017 | Msa0522440:CDS | 50.0% | |
| !! | GGATACCGGCTTGACCAATG+TGG | + | chr3_4:75528403-75528422 | None:intergenic | 55.0% |
| CATTGGTCAAGCCGGTATCC+AGG | - | chr3_4:75528403-75528422 | Msa0522440:three_prime_UTR | 55.0% | |
| GGCATTTCCGACCTGGATAC+CGG | + | chr3_4:75528417-75528436 | None:intergenic | 55.0% | |
| CTGCCTTGAACACGGCATTC+AGG | - | chr3_4:75528451-75528470 | Msa0522440:three_prime_UTR | 55.0% | |
| ATGCCTGGAGACAAGACCGT+TGG | - | chr3_4:75528607-75528626 | Msa0522440:three_prime_UTR | 55.0% | |
| GGCATCATCTCCTCCTCCAA+CGG | + | chr3_4:75528626-75528645 | None:intergenic | 55.0% | |
| TTCTTCAGCGAAACCGGTGC+CGG | - | chr3_4:75528655-75528674 | Msa0522440:three_prime_UTR | 55.0% | |
| TGGAACATGCTTTCCGGCAC+CGG | + | chr3_4:75528671-75528690 | None:intergenic | 55.0% | |
| CGCTGATGAGTTGTTCAGGG+TGG | + | chr3_4:75528765-75528784 | None:intergenic | 55.0% | |
| ATGACCACGGGCGAAGTTGT+TGG | + | chr3_4:75528803-75528822 | None:intergenic | 55.0% | |
| GTGTTCAATGCTGTGGGTGG+TGG | - | chr3_4:75529007-75529026 | Msa0522440:CDS | 55.0% | |
| !! | AATGCTGTGGGTGGTGGAAC+CGG | - | chr3_4:75529013-75529032 | Msa0522440:CDS | 55.0% |
| TGGTGGAACCGGATCTGGTT+TGG | - | chr3_4:75529024-75529043 | Msa0522440:CDS | 55.0% | |
| ! | GGTGGAACCGGATCTGGTTT+GGG | - | chr3_4:75529025-75529044 | Msa0522440:CDS | 55.0% |
| GAGGTAGAAACCTGGGGAGA+TGG | + | chr3_4:75529118-75529137 | None:intergenic | 55.0% | |
| TCCCCAGGTTTCTACCTCTG+TGG | - | chr3_4:75529120-75529139 | Msa0522440:CDS | 55.0% | |
| CAGTGTGCTCAAGGAGGGAA+TGG | + | chr3_4:75529174-75529193 | None:intergenic | 55.0% | |
| CCTGAGAGACAAGGCGATTG+AGG | + | chr3_4:75529279-75529298 | None:intergenic | 55.0% | |
| CCTCAATCGCCTTGTCTCTC+AGG | - | chr3_4:75529276-75529295 | Msa0522440:CDS | 55.0% | |
| CATCCCTCACTGCCTCTTTG+AGG | - | chr3_4:75529466-75529485 | Msa0522440:CDS | 55.0% | |
| CCTTAGGCACAACATCACCG+CGG | + | chr3_4:75529719-75529738 | None:intergenic | 55.0% | |
| CAGGAACAACAGTTGGAGGC+TGG | + | chr3_4:75529833-75529852 | None:intergenic | 55.0% | |
| CAGCCTCCAACTGTTGTTCC+TGG | - | chr3_4:75529831-75529850 | Msa0522440:CDS | 55.0% | |
| CCACCAGGAACAACAGTTGG+AGG | + | chr3_4:75529837-75529856 | None:intergenic | 55.0% | |
| CCTCCAACTGTTGTTCCTGG+TGG | - | chr3_4:75529834-75529853 | Msa0522440:CDS | 55.0% | |
| ! | TCCTGGTGGTGATCTTGCCA+AGG | - | chr3_4:75529848-75529867 | Msa0522440:CDS | 55.0% |
| ACCTTGGCAAGATCACCACC+AGG | + | chr3_4:75529852-75529871 | None:intergenic | 55.0% | |
| !! | TGAGTTCTCTGAGGCTCGTG+AGG | - | chr3_4:75530007-75530026 | Msa0522440:CDS | 55.0% |
| GGATCTTGCTGCTCTCGAGA+AGG | - | chr3_4:75530028-75530047 | Msa0522440:CDS | 55.0% | |
| !! | GTTGGTGCTGAGTCTGGTGA+TGG | - | chr3_4:75530062-75530081 | Msa0522440:CDS | 55.0% |
| GGTCAAGCCGGTATCCAGGT+CGG | - | chr3_4:75528407-75528426 | Msa0522440:three_prime_UTR | 60.0% | |
| TCCAGGTCGGAAATGCCTGC+TGG | - | chr3_4:75528420-75528439 | Msa0522440:three_prime_UTR | 60.0% | |
| CCAGGTCGGAAATGCCTGCT+GGG | - | chr3_4:75528421-75528440 | Msa0522440:three_prime_UTR | 60.0% | |
| TCTCCAGGCATCTGGCCATC+AGG | + | chr3_4:75528598-75528617 | None:intergenic | 60.0% | |
| ! | CGGTCTTGTCTCCAGGCATC+TGG | + | chr3_4:75528606-75528625 | None:intergenic | 60.0% |
| ! | CCTCCAACGGTCTTGTCTCC+AGG | + | chr3_4:75528613-75528632 | None:intergenic | 60.0% |
| CCTGGAGACAAGACCGTTGG+AGG | - | chr3_4:75528610-75528629 | Msa0522440:three_prime_UTR | 60.0% | |
| GGAGACAAGACCGTTGGAGG+AGG | - | chr3_4:75528613-75528632 | Msa0522440:three_prime_UTR | 60.0% | |
| GGCGCGTGGAACATGCTTTC+CGG | + | chr3_4:75528677-75528696 | None:intergenic | 60.0% | |
| AGATCTACGAAGACGGCGCG+TGG | + | chr3_4:75528691-75528710 | None:intergenic | 60.0% | |
| ACGCGCCGTCTTCGTAGATC+TGG | - | chr3_4:75528690-75528709 | Msa0522440:three_prime_UTR | 60.0% | |
| GCTAAGTGTGACCCTCGCCA+TGG | - | chr3_4:75529666-75529685 | Msa0522440:intron | 60.0% | |
| CCGCGGTGATGTTGTGCCTA+AGG | - | chr3_4:75529716-75529735 | Msa0522440:intron | 60.0% | |
| GCACACAGCCCTTTGGACCT+TGG | + | chr3_4:75529868-75529887 | None:intergenic | 60.0% | |
| !! | GAGGAGGTTGGTGCTGAGTC+TGG | - | chr3_4:75530056-75530075 | Msa0522440:CDS | 60.0% |
| CCCAGCAGGCATTTCCGACC+TGG | + | chr3_4:75528424-75528443 | None:intergenic | 65.0% | |
| CAGCCTGATGGCCAGATGCC+TGG | - | chr3_4:75528592-75528611 | Msa0522440:three_prime_UTR | 65.0% | |
| GCTGCCAACAACTTCGCCCG+TGG | - | chr3_4:75528796-75528815 | Msa0522440:three_prime_UTR | 65.0% | |
| !! | GTGGGTGGTGGAACCGGATC+TGG | - | chr3_4:75529019-75529038 | Msa0522440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 75528167 | 75530870 | 75528167 | ID=Msa0522440;Name=Msa0522440 |
| chr3_4 | mRNA | 75528167 | 75530870 | 75528167 | ID=Msa0522440-mRNA-1;Parent=Msa0522440;Name=Msa0522440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=213|1|1|1|1|1|4|755|451 |
| chr3_4 | exon | 75528167 | 75529578 | 75528167 | ID=Msa0522440-mRNA-1:exon:21696;Parent=Msa0522440-mRNA-1 |
| chr3_4 | exon | 75529740 | 75530110 | 75529740 | ID=Msa0522440-mRNA-1:exon:21695;Parent=Msa0522440-mRNA-1 |
| chr3_4 | exon | 75530208 | 75530442 | 75530208 | ID=Msa0522440-mRNA-1:exon:21694;Parent=Msa0522440-mRNA-1 |
| chr3_4 | exon | 75530565 | 75530870 | 75530565 | ID=Msa0522440-mRNA-1:exon:21693;Parent=Msa0522440-mRNA-1 |
| chr3_4 | five_prime_UTR | 75530658 | 75530870 | 75530658 | ID=Msa0522440-mRNA-1:five_prime_utr;Parent=Msa0522440-mRNA-1 |
| chr3_4 | CDS | 75530565 | 75530657 | 75530565 | ID=Msa0522440-mRNA-1:cds;Parent=Msa0522440-mRNA-1 |
| chr3_4 | CDS | 75530208 | 75530442 | 75530208 | ID=Msa0522440-mRNA-1:cds;Parent=Msa0522440-mRNA-1 |
| chr3_4 | CDS | 75529740 | 75530110 | 75529740 | ID=Msa0522440-mRNA-1:cds;Parent=Msa0522440-mRNA-1 |
| chr3_4 | CDS | 75528922 | 75529578 | 75528922 | ID=Msa0522440-mRNA-1:cds;Parent=Msa0522440-mRNA-1 |
| chr3_4 | three_prime_UTR | 75528167 | 75528921 | 75528167 | ID=Msa0522440-mRNA-1:three_prime_utr;Parent=Msa0522440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
