Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386280 | XP_003603866.1 | 97.561 | 328 | 7 | 1 | 1 | 327 | 1 | 328 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386280 | sp|Q8GWA7|MCD1_ARATH | 61.134 | 247 | 90 | 4 | 53 | 296 | 93 | 336 | 7.33e-104 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386280 | G7J6F8 | 97.561 | 328 | 7 | 1 | 1 | 327 | 1 | 328 | 0.0 | 655 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0167500 | Msa0386280 | 0.806992 | 6.281505e-50 | -8.615850e-47 |
| Msa0386280 | Msa0542060 | 0.815808 | 7.645544e-52 | -8.615850e-47 |
| Msa0386280 | Msa0645800 | 0.815691 | 8.121229e-52 | -8.615850e-47 |
| Msa0386280 | Msa0654410 | 0.802629 | 5.123212e-49 | -8.615850e-47 |
| Msa0386280 | Msa0685110 | 0.816158 | 6.387402e-52 | -8.615850e-47 |
| Msa0386280 | Msa0685500 | 0.823610 | 1.262620e-53 | -8.615850e-47 |
| Msa0386280 | Msa1030950 | 0.810442 | 1.150560e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386280 | MtrunA17_Chr3g0144251 | 97.561 | 328 | 7 | 1 | 1 | 327 | 1 | 328 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386280 | AT1G20830.1 | 61.134 | 247 | 90 | 4 | 53 | 296 | 93 | 336 | 7.45e-105 | 311 |
| Msa0386280 | AT1G20830.2 | 62.393 | 234 | 85 | 3 | 66 | 296 | 4 | 237 | 1.42e-104 | 306 |
Find 84 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGTTGCTGTTGTAATTT+TGG | 0.111441 | 3_1:+90065113 | Msa0386280:CDS |
| CATCCCAATGCCGCAATTTC+TGG | 0.160726 | 3_1:+90064959 | Msa0386280:CDS |
| AAGAAGTTGATGATGAAATT+TGG | 0.225810 | 3_1:-90064925 | None:intergenic |
| ACTACTGCTACCGATGAAAA+AGG | 0.273471 | 3_1:-90064817 | None:intergenic |
| TGCATTGTTGTTTGAATTGT+TGG | 0.274397 | 3_1:-90064890 | None:intergenic |
| CTTAGGCAGGCTATAAATTT+CGG | 0.281915 | 3_1:+90067195 | Msa0386280:three_prime_UTR |
| TTGGGAGCAATTTACCGATT+TGG | 0.287214 | 3_1:+90065088 | Msa0386280:CDS |
| AGCAAATCATGGCGTCAATT+TGG | 0.293604 | 3_1:+90064659 | Msa0386280:exon |
| TGGGAGCAATTTACCGATTT+GGG | 0.323263 | 3_1:+90065089 | Msa0386280:CDS |
| GAAGCGATGTCTTCTTCTTC+TGG | 0.338856 | 3_1:-90064844 | None:intergenic |
| GGGAAACTCCTAATGAAATC+TGG | 0.339756 | 3_1:-90067346 | None:intergenic |
| GCTGTTACCCAGATTTCATT+AGG | 0.345285 | 3_1:+90067338 | Msa0386280:three_prime_UTR |
| GGGCTTCAAGCTTTCTCTGC+AGG | 0.352570 | 3_1:-90066321 | None:intergenic |
| TCAAATTCTTTAGCATTGAT+AGG | 0.353758 | 3_1:-90067010 | None:intergenic |
| GATGCACTTCCAAAGTTATT+CGG | 0.367031 | 3_1:-90067133 | None:intergenic |
| GAAGAGCTCTTTAAACAATC+AGG | 0.385369 | 3_1:+90067075 | Msa0386280:CDS |
| TTGAAATTCCATTTGTGATA+AGG | 0.386435 | 3_1:-90064866 | None:intergenic |
| TCCTCTTGAGTAAGTGTGAC+AGG | 0.397039 | 3_1:-90066067 | None:intergenic |
| AGATGTGTGGAAAGGTTTAC+CGG | 0.414408 | 3_1:+90066038 | Msa0386280:CDS |
| GCTACCAGAAATTGCGGCAT+TGG | 0.425514 | 3_1:-90064963 | None:intergenic |
| CATCGCTTCCTTATCACAAA+TGG | 0.429433 | 3_1:+90064858 | Msa0386280:CDS |
| GACAGCAGTCCGAATAACTT+TGG | 0.434069 | 3_1:+90067124 | Msa0386280:CDS |
| GGAAGAGGGAGCAATGGAAA+TGG | 0.434265 | 3_1:+90064612 | Msa0386280:five_prime_UTR |
| GCATTGTTGTTTGAATTGTT+GGG | 0.438490 | 3_1:-90064889 | None:intergenic |
| TTGATGATGAAATTTGGAAA+TGG | 0.444261 | 3_1:-90064919 | None:intergenic |
| CACACTTACTCAAGAGGAAC+AGG | 0.447227 | 3_1:+90066072 | Msa0386280:CDS |
| TTTGGAAGTGCATCATCATC+TGG | 0.449415 | 3_1:+90067142 | Msa0386280:CDS |
| GCAACCACCTCTACAGATAT+CGG | 0.457074 | 3_1:+90066226 | Msa0386280:CDS |
| TAAGTGTGACAGGGGCTAAC+CGG | 0.458683 | 3_1:-90066057 | None:intergenic |
| TGTAGACGAATCGAAACATT+GGG | 0.461258 | 3_1:+90065070 | Msa0386280:intron |
| CTACCAGAAATTGCGGCATT+GGG | 0.461927 | 3_1:-90064962 | None:intergenic |
| GGCTTCAAGCTTTCTCTGCA+GGG | 0.469067 | 3_1:-90066320 | None:intergenic |
| ATCTGTAGAGGTGGTTGCAA+AGG | 0.470698 | 3_1:-90066221 | None:intergenic |
| GAACTGAGTCTCCTTCCTTA+AGG | 0.471097 | 3_1:-90066150 | None:intergenic |
| ATTGTATCGGGATCAACATC+TGG | 0.478900 | 3_1:-90066175 | None:intergenic |
| ACAGCAACACAGACCCAAAT+CGG | 0.483257 | 3_1:-90065102 | None:intergenic |
| CCTCATGCTCAGCTTGAATA+CGG | 0.491562 | 3_1:-90066297 | None:intergenic |
| CAGAAATTGCGGCATTGGGA+TGG | 0.494001 | 3_1:-90064958 | None:intergenic |
| ATGTTGATCCCGATACAATC+AGG | 0.507636 | 3_1:+90066179 | Msa0386280:CDS |
| GGAATCCACCTGATTGTATC+GGG | 0.511366 | 3_1:-90066187 | None:intergenic |
| ACGCACGTGATCTCCTTCTC+TGG | 0.511994 | 3_1:-90066102 | None:intergenic |
| GTACTATTATCGGTGAGCAT+TGG | 0.513680 | 3_1:+90067251 | Msa0386280:three_prime_UTR |
| CATGATCATTTAATCTGCCA+TGG | 0.520486 | 3_1:-90067048 | None:intergenic |
| GGAAACTCCTAATGAAATCT+GGG | 0.520917 | 3_1:-90067345 | None:intergenic |
| CCTCTTGAGTAAGTGTGACA+GGG | 0.528748 | 3_1:-90066066 | None:intergenic |
| ACAAGATCAGCTACGGAACC+AGG | 0.529125 | 3_1:-90065183 | None:intergenic |
| AGGAATCCACCTGATTGTAT+CGG | 0.532431 | 3_1:-90066188 | None:intergenic |
| GTTGCAAAGGGATGATTCGC+AGG | 0.533369 | 3_1:-90066208 | None:intergenic |
| CAAATAGCAATAGCAAATCA+TGG | 0.538248 | 3_1:+90064648 | Msa0386280:exon |
| ACTGTCTATTTGTATAGCTA+AGG | 0.541900 | 3_1:+90067275 | Msa0386280:three_prime_UTR |
| AACAGGCGGTTCACCAGAGA+AGG | 0.544520 | 3_1:+90066089 | Msa0386280:CDS |
| GGAGATCACGTGCGTATCAG+TGG | 0.548992 | 3_1:+90066110 | Msa0386280:CDS |
| GTGTTTGGAAGAGGGAGCAA+TGG | 0.554078 | 3_1:+90064606 | Msa0386280:five_prime_UTR |
| TCTGTAGAGGTGGTTGCAAA+GGG | 0.561104 | 3_1:-90066220 | None:intergenic |
| CCCTGTCACACTTACTCAAG+AGG | 0.564938 | 3_1:+90066066 | Msa0386280:CDS |
| TTGTAGACGAATCGAAACAT+TGG | 0.574104 | 3_1:+90065069 | Msa0386280:intron |
| ATTCGATAATCCCTTGGTCA+AGG | 0.575622 | 3_1:+90065991 | Msa0386280:CDS |
| GAGAGACCATTCGACTCCCA+TGG | 0.588483 | 3_1:+90067031 | Msa0386280:CDS |
| AGATCCATTCGATAATCCCT+TGG | 0.593415 | 3_1:+90065985 | Msa0386280:CDS |
| TAGACGCGGTCAATTGAGAT+CGG | 0.593965 | 3_1:+90065206 | Msa0386280:CDS |
| CCGTATTCAAGCTGAGCATG+AGG | 0.599509 | 3_1:+90066297 | Msa0386280:CDS |
| AGTTAGTCTCGTAGCACGAA+GGG | 0.604135 | 3_1:-90067368 | None:intergenic |
| ATGAAAGCTACCAGAAATTG+CGG | 0.610736 | 3_1:-90064969 | None:intergenic |
| AAGTGTAGAGATGTGTGGAA+AGG | 0.612784 | 3_1:+90066030 | Msa0386280:CDS |
| TGCTCAGCTTGAATACGGAA+AGG | 0.619175 | 3_1:-90066292 | None:intergenic |
| ATGATCATTTAATCTGCCAT+GGG | 0.621182 | 3_1:-90067047 | None:intergenic |
| CTCACCGATATCTGTAGAGG+TGG | 0.625854 | 3_1:-90066230 | None:intergenic |
| TTGACCAAGGGATTATCGAA+TGG | 0.627921 | 3_1:-90065989 | None:intergenic |
| GCGTCTAACAAGATCAGCTA+CGG | 0.634159 | 3_1:-90065190 | None:intergenic |
| AAGTTAGTCTCGTAGCACGA+AGG | 0.642624 | 3_1:-90067369 | None:intergenic |
| GTCCTCACCGATATCTGTAG+AGG | 0.648459 | 3_1:-90066233 | None:intergenic |
| TTGATCCCGATACAATCAGG+TGG | 0.673066 | 3_1:+90066182 | Msa0386280:CDS |
| CCTTCCTTAAGGAAAACTGT+GGG | 0.676647 | 3_1:-90066139 | None:intergenic |
| GTTAGTCTCGTAGCACGAAG+GGG | 0.680991 | 3_1:-90067367 | None:intergenic |
| CTCTTGAGTAAGTGTGACAG+GGG | 0.681129 | 3_1:-90066065 | None:intergenic |
| TCCTTCCTTAAGGAAAACTG+TGG | 0.681803 | 3_1:-90066140 | None:intergenic |
| TTAGTCTCGTAGCACGAAGG+GGG | 0.686207 | 3_1:-90067366 | None:intergenic |
| AAATCAAGTGTAGAGATGTG+TGG | 0.686378 | 3_1:+90066025 | Msa0386280:CDS |
| CAATTGAGATCGGATAGAAG+AGG | 0.688587 | 3_1:+90065216 | Msa0386280:CDS |
| GTATCGGGATCAACATCTGG+AGG | 0.693969 | 3_1:-90066172 | None:intergenic |
| GTAGCTGATCTTGTTAGACG+CGG | 0.705664 | 3_1:+90065192 | Msa0386280:CDS |
| ACTTACTCAAGAGGAACAGG+CGG | 0.707329 | 3_1:+90066075 | Msa0386280:CDS |
| AATCTGCCATGGGAGTCGAA+TGG | 0.713980 | 3_1:-90067037 | None:intergenic |
| CACCTCTACAGATATCGGTG+AGG | 0.728300 | 3_1:+90066231 | Msa0386280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATATATATTACTACT+AGG | + | chr3_1:90065862-90065881 | Msa0386280:intron | 10.0% |
| !! | ATTCTTGATTAAATTTAAAT+TGG | - | chr3_1:90066903-90066922 | None:intergenic | 10.0% |
| !!! | TAAAAATTTTGTACTATTAT+CGG | + | chr3_1:90067241-90067260 | Msa0386280:three_prime_UTR | 10.0% |
| !!! | TTCTTATTTTAATTCAGATT+AGG | + | chr3_1:90065014-90065033 | Msa0386280:intron | 15.0% |
| !!! | TCTTATTTTAATTCAGATTA+GGG | + | chr3_1:90065015-90065034 | Msa0386280:intron | 15.0% |
| !!! | AATTTTATAATCCAAATCTA+AGG | - | chr3_1:90065618-90065637 | None:intergenic | 15.0% |
| !! | TAAATTCATGTATATTTCTT+TGG | - | chr3_1:90065836-90065855 | None:intergenic | 15.0% |
| !! | GTCTGAATAAAAAAAATTAA+TGG | + | chr3_1:90066731-90066750 | Msa0386280:intron | 15.0% |
| !!! | CTTAAACTTTAATTTTTCTT+AGG | + | chr3_1:90067178-90067197 | Msa0386280:exon | 15.0% |
| !!! | CAAACACTTTTTTATTTTTC+TGG | - | chr3_1:90064593-90064612 | None:intergenic | 20.0% |
| !!! | CAGAAAAATAAAAAAGTGTT+TGG | + | chr3_1:90064591-90064610 | Msa0386280:five_prime_UTR | 20.0% |
| !!! | AGTTTTTATGGTATTTGATA+TGG | + | chr3_1:90065043-90065062 | Msa0386280:intron | 20.0% |
| !!! | TTATCTAAATTGACTTATCT+AGG | - | chr3_1:90065303-90065322 | None:intergenic | 20.0% |
| !!! | TAAAAGGCAAAAATGATTTT+TGG | + | chr3_1:90065531-90065550 | Msa0386280:intron | 20.0% |
| !! | ATATTTAAATATACCTACGT+AGG | - | chr3_1:90065709-90065728 | None:intergenic | 20.0% |
| !!! | TTTTTTATTCAGACATTACT+TGG | - | chr3_1:90066725-90066744 | None:intergenic | 20.0% |
| !!! | TTTTTACCCTCTTTTTTTAT+TGG | + | chr3_1:90066843-90066862 | Msa0386280:intron | 20.0% |
| !! | AATCAAGAATATCAAGAAAT+TGG | + | chr3_1:90066913-90066932 | Msa0386280:intron | 20.0% |
| !!! | AATAAAAAAGTGTTTGGAAG+AGG | + | chr3_1:90064597-90064616 | Msa0386280:five_prime_UTR | 25.0% |
| !!! | ATAAAAAAGTGTTTGGAAGA+GGG | + | chr3_1:90064598-90064617 | Msa0386280:five_prime_UTR | 25.0% |
| ! | CTATCTATCTATCTTCAATT+AGG | + | chr3_1:90064724-90064743 | Msa0386280:intron | 25.0% |
| ! | TTGAAATTCCATTTGTGATA+AGG | - | chr3_1:90064869-90064888 | None:intergenic | 25.0% |
| !!! | TTGATGATGAAATTTGGAAA+TGG | - | chr3_1:90064922-90064941 | None:intergenic | 25.0% |
| !!! | AAGAAGTTGATGATGAAATT+TGG | - | chr3_1:90064928-90064947 | None:intergenic | 25.0% |
| !!! | ATTAGGGTTTTGAGTTTTTA+TGG | + | chr3_1:90065031-90065050 | Msa0386280:intron | 25.0% |
| !!! | TTCTTTTTTCCTGGAAAATT+TGG | - | chr3_1:90065160-90065179 | None:intergenic | 25.0% |
| ! | TTAGAGCTTGAACAAAATTA+TGG | + | chr3_1:90065376-90065395 | Msa0386280:intron | 25.0% |
| !!! | GTTTGGATTCACTTTTTAAA+AGG | + | chr3_1:90065515-90065534 | Msa0386280:intron | 25.0% |
| !!! | AATTGCTTTTTCCTTAGATT+TGG | + | chr3_1:90065604-90065623 | Msa0386280:intron | 25.0% |
| ! | AAAGACAACAATGTAATAAC+GGG | - | chr3_1:90065917-90065936 | None:intergenic | 25.0% |
| ! | GAAAGACAACAATGTAATAA+CGG | - | chr3_1:90065918-90065937 | None:intergenic | 25.0% |
| ! | AAAAATGTTAGTCAAAAGCA+TGG | + | chr3_1:90066265-90066284 | Msa0386280:CDS | 25.0% |
| ! | ACAAAACATTAGACATAACA+TGG | + | chr3_1:90066542-90066561 | Msa0386280:intron | 25.0% |
| ! | TGCAGAATAAATAATGCAAA+AGG | - | chr3_1:90066959-90066978 | None:intergenic | 25.0% |
| !! | TTTTGCATTATTTATTCTGC+AGG | + | chr3_1:90066958-90066977 | Msa0386280:intron | 25.0% |
| !!! | TCAAATTCTTTAGCATTGAT+AGG | - | chr3_1:90067013-90067032 | None:intergenic | 25.0% |
| !!! | AACTTTAATTTTTCTTAGGC+AGG | + | chr3_1:90067182-90067201 | Msa0386280:exon | 25.0% |
| CAAATAGCAATAGCAAATCA+TGG | + | chr3_1:90064648-90064667 | Msa0386280:exon | 30.0% | |
| !! | GCATTGTTGTTTGAATTGTT+GGG | - | chr3_1:90064892-90064911 | None:intergenic | 30.0% |
| !! | TGCATTGTTGTTTGAATTGT+TGG | - | chr3_1:90064893-90064912 | None:intergenic | 30.0% |
| !!! | TAATTTTGGTTGCTTCTTTG+AGG | + | chr3_1:90065127-90065146 | Msa0386280:CDS | 30.0% |
| !!! | AATTTTGGTTGCTTCTTTGA+GGG | + | chr3_1:90065128-90065147 | Msa0386280:CDS | 30.0% |
| ! | AATTGACTTATCTAGGCATT+GGG | - | chr3_1:90065296-90065315 | None:intergenic | 30.0% |
| ! | AAATTGACTTATCTAGGCAT+TGG | - | chr3_1:90065297-90065316 | None:intergenic | 30.0% |
| !!! | ATTTTGATTGCTGTTTAGTC+TGG | - | chr3_1:90065418-90065437 | None:intergenic | 30.0% |
| !! | TGTTCATGTTTTTCAGATCA+AGG | + | chr3_1:90065948-90065967 | Msa0386280:intron | 30.0% |
| ! | GCTAAGACTTACATTTTGTA+GGG | - | chr3_1:90066344-90066363 | None:intergenic | 30.0% |
| ! | TGCTAAGACTTACATTTTGT+AGG | - | chr3_1:90066345-90066364 | None:intergenic | 30.0% |
| ATGTAAGTCTTAGCAGAATA+AGG | + | chr3_1:90066350-90066369 | Msa0386280:intron | 30.0% | |
| ! | TGGACTTATCTTGACATTTT+TGG | + | chr3_1:90066620-90066639 | Msa0386280:intron | 30.0% |
| TATCCATACACTCTTCATTA+GGG | - | chr3_1:90066759-90066778 | None:intergenic | 30.0% | |
| !! | AAGAGTGTATGGATACATTT+TGG | + | chr3_1:90066764-90066783 | Msa0386280:intron | 30.0% |
| CTTCTGCCAATAAAAAAAGA+GGG | - | chr3_1:90066852-90066871 | None:intergenic | 30.0% | |
| TAAATAATGCAAAAGGTGAG+TGG | - | chr3_1:90066952-90066971 | None:intergenic | 30.0% | |
| ATTATTTATTCTGCAGGAAG+AGG | + | chr3_1:90066964-90066983 | Msa0386280:intron | 30.0% | |
| ATGATCATTTAATCTGCCAT+GGG | - | chr3_1:90067050-90067069 | None:intergenic | 30.0% | |
| ACTGTCTATTTGTATAGCTA+AGG | + | chr3_1:90067275-90067294 | Msa0386280:three_prime_UTR | 30.0% | |
| ATGAAAGCTACCAGAAATTG+CGG | - | chr3_1:90064972-90064991 | None:intergenic | 35.0% | |
| TTGTAGACGAATCGAAACAT+TGG | + | chr3_1:90065069-90065088 | Msa0386280:intron | 35.0% | |
| TGTAGACGAATCGAAACATT+GGG | + | chr3_1:90065070-90065089 | Msa0386280:intron | 35.0% | |
| !! | CTGTGTTGCTGTTGTAATTT+TGG | + | chr3_1:90065113-90065132 | Msa0386280:CDS | 35.0% |
| !! | TTTGTTCAAGCTCTAAAGTG+TGG | - | chr3_1:90065372-90065391 | None:intergenic | 35.0% |
| TGTTTAGTCTGGCAAAATTG+TGG | - | chr3_1:90065407-90065426 | None:intergenic | 35.0% | |
| AAATCAAGTGTAGAGATGTG+TGG | + | chr3_1:90066025-90066044 | Msa0386280:CDS | 35.0% | |
| ! | TCTAAAACCGCATCAAACAT+AGG | - | chr3_1:90066388-90066407 | None:intergenic | 35.0% |
| !! | TATGTTTGATGCGGTTTTAG+AGG | + | chr3_1:90066387-90066406 | Msa0386280:intron | 35.0% |
| TAGCAACTAGGATAAAGACA+TGG | - | chr3_1:90066427-90066446 | None:intergenic | 35.0% | |
| TGTCTTTATCCTAGTTGCTA+AGG | + | chr3_1:90066427-90066446 | Msa0386280:intron | 35.0% | |
| TATCCTAGTTGCTAAGGATT+TGG | + | chr3_1:90066433-90066452 | Msa0386280:intron | 35.0% | |
| ATCCTAGTTGCTAAGGATTT+GGG | + | chr3_1:90066434-90066453 | Msa0386280:intron | 35.0% | |
| ATCCATACACTCTTCATTAG+GGG | - | chr3_1:90066758-90066777 | None:intergenic | 35.0% | |
| GTATCCATACACTCTTCATT+AGG | - | chr3_1:90066760-90066779 | None:intergenic | 35.0% | |
| CCTTCTGCCAATAAAAAAAG+AGG | - | chr3_1:90066853-90066872 | None:intergenic | 35.0% | |
| !!! | CCTCTTTTTTTATTGGCAGA+AGG | + | chr3_1:90066850-90066869 | Msa0386280:intron | 35.0% |
| CATGATCATTTAATCTGCCA+TGG | - | chr3_1:90067051-90067070 | None:intergenic | 35.0% | |
| GAAGAGCTCTTTAAACAATC+AGG | + | chr3_1:90067075-90067094 | Msa0386280:CDS | 35.0% | |
| GATGCACTTCCAAAGTTATT+CGG | - | chr3_1:90067136-90067155 | None:intergenic | 35.0% | |
| CTTAGGCAGGCTATAAATTT+CGG | + | chr3_1:90067195-90067214 | Msa0386280:three_prime_UTR | 35.0% | |
| GGAAACTCCTAATGAAATCT+GGG | - | chr3_1:90067348-90067367 | None:intergenic | 35.0% | |
| AGCAAATCATGGCGTCAATT+TGG | + | chr3_1:90064659-90064678 | Msa0386280:exon | 40.0% | |
| !! | CCTTTTTGCCCCTTTTTCAT+CGG | + | chr3_1:90064807-90064826 | Msa0386280:CDS | 40.0% |
| TACTGCTACCGATGAAAAAG+GGG | - | chr3_1:90064818-90064837 | None:intergenic | 40.0% | |
| CTACTGCTACCGATGAAAAA+GGG | - | chr3_1:90064819-90064838 | None:intergenic | 40.0% | |
| ACTACTGCTACCGATGAAAA+AGG | - | chr3_1:90064820-90064839 | None:intergenic | 40.0% | |
| CATCGCTTCCTTATCACAAA+TGG | + | chr3_1:90064858-90064877 | Msa0386280:CDS | 40.0% | |
| ! | TTGGGAGCAATTTACCGATT+TGG | + | chr3_1:90065088-90065107 | Msa0386280:CDS | 40.0% |
| !! | TGGGAGCAATTTACCGATTT+GGG | + | chr3_1:90065089-90065108 | Msa0386280:CDS | 40.0% |
| CAATTGAGATCGGATAGAAG+AGG | + | chr3_1:90065216-90065235 | Msa0386280:CDS | 40.0% | |
| ACGGGAAGCTAAATCTCAAT+AGG | - | chr3_1:90065899-90065918 | None:intergenic | 40.0% | |
| AGATCCATTCGATAATCCCT+TGG | + | chr3_1:90065985-90066004 | Msa0386280:CDS | 40.0% | |
| TTGACCAAGGGATTATCGAA+TGG | - | chr3_1:90065992-90066011 | None:intergenic | 40.0% | |
| ATTCGATAATCCCTTGGTCA+AGG | + | chr3_1:90065991-90066010 | Msa0386280:CDS | 40.0% | |
| ! | CTTTTGCTAACCTTGACCAA+GGG | - | chr3_1:90066004-90066023 | None:intergenic | 40.0% |
| AAGTGTAGAGATGTGTGGAA+AGG | + | chr3_1:90066030-90066049 | Msa0386280:CDS | 40.0% | |
| AGATGTGTGGAAAGGTTTAC+CGG | + | chr3_1:90066038-90066057 | Msa0386280:CDS | 40.0% | |
| CCTTCCTTAAGGAAAACTGT+GGG | - | chr3_1:90066142-90066161 | None:intergenic | 40.0% | |
| TCCTTCCTTAAGGAAAACTG+TGG | - | chr3_1:90066143-90066162 | None:intergenic | 40.0% | |
| ATTGTATCGGGATCAACATC+TGG | - | chr3_1:90066178-90066197 | None:intergenic | 40.0% | |
| ATGTTGATCCCGATACAATC+AGG | + | chr3_1:90066179-90066198 | Msa0386280:CDS | 40.0% | |
| AGGAATCCACCTGATTGTAT+CGG | - | chr3_1:90066191-90066210 | None:intergenic | 40.0% | |
| CAACAGTCCTATGTTTGATG+CGG | + | chr3_1:90066378-90066397 | Msa0386280:intron | 40.0% | |
| TCCTAGTTGCTAAGGATTTG+GGG | + | chr3_1:90066435-90066454 | Msa0386280:intron | 40.0% | |
| ! | ATCACTTGTGTTGATGCATG+TGG | - | chr3_1:90066568-90066587 | None:intergenic | 40.0% |
| ! | TACATGAGGTGTAAGAGTGT+TGG | - | chr3_1:90066804-90066823 | None:intergenic | 40.0% |
| GAAGCACATACTTCTACATG+AGG | - | chr3_1:90066818-90066837 | None:intergenic | 40.0% | |
| !! | CTGTCTAATTTTGAGGAGAG+GGG | - | chr3_1:90067109-90067128 | None:intergenic | 40.0% |
| !! | GCTGTCTAATTTTGAGGAGA+GGG | - | chr3_1:90067110-90067129 | None:intergenic | 40.0% |
| !! | TGCTGTCTAATTTTGAGGAG+AGG | - | chr3_1:90067111-90067130 | None:intergenic | 40.0% |
| ! | TTTGGAAGTGCATCATCATC+TGG | + | chr3_1:90067142-90067161 | Msa0386280:CDS | 40.0% |
| GTACTATTATCGGTGAGCAT+TGG | + | chr3_1:90067251-90067270 | Msa0386280:three_prime_UTR | 40.0% | |
| GCTGTTACCCAGATTTCATT+AGG | + | chr3_1:90067338-90067357 | Msa0386280:three_prime_UTR | 40.0% | |
| GGGAAACTCCTAATGAAATC+TGG | - | chr3_1:90067349-90067368 | None:intergenic | 40.0% | |
| CCGATGAAAAAGGGGCAAAA+AGG | - | chr3_1:90064810-90064829 | None:intergenic | 45.0% | |
| GAAGCGATGTCTTCTTCTTC+TGG | - | chr3_1:90064847-90064866 | None:intergenic | 45.0% | |
| CTACCAGAAATTGCGGCATT+GGG | - | chr3_1:90064965-90064984 | None:intergenic | 45.0% | |
| ACAGCAACACAGACCCAAAT+CGG | - | chr3_1:90065105-90065124 | None:intergenic | 45.0% | |
| ! | GGGCTCTTTCCAAATTTTCC+AGG | + | chr3_1:90065148-90065167 | Msa0386280:CDS | 45.0% |
| TCCAGGAAAAAAGAACGTCC+TGG | + | chr3_1:90065165-90065184 | Msa0386280:CDS | 45.0% | |
| !!! | ACCAGGACGTTCTTTTTTCC+TGG | - | chr3_1:90065169-90065188 | None:intergenic | 45.0% |
| GCGTCTAACAAGATCAGCTA+CGG | - | chr3_1:90065193-90065212 | None:intergenic | 45.0% | |
| GTAGCTGATCTTGTTAGACG+CGG | + | chr3_1:90065192-90065211 | Msa0386280:CDS | 45.0% | |
| TAGACGCGGTCAATTGAGAT+CGG | + | chr3_1:90065206-90065225 | Msa0386280:CDS | 45.0% | |
| TGTGTGTGTGTGCGTATGTT+TGG | + | chr3_1:90065334-90065353 | Msa0386280:intron | 45.0% | |
| !! | TTAGTGCTGTTTGAGTCGTG+AGG | + | chr3_1:90065444-90065463 | Msa0386280:intron | 45.0% |
| AGTGAATCCAAACATGCACC+AGG | - | chr3_1:90065508-90065527 | None:intergenic | 45.0% | |
| CATTCAACTCACTCCTACGT+AGG | + | chr3_1:90065693-90065712 | Msa0386280:intron | 45.0% | |
| ! | GCTTTTGCTAACCTTGACCA+AGG | - | chr3_1:90066005-90066024 | None:intergenic | 45.0% |
| CTCTTGAGTAAGTGTGACAG+GGG | - | chr3_1:90066068-90066087 | None:intergenic | 45.0% | |
| CCTCTTGAGTAAGTGTGACA+GGG | - | chr3_1:90066069-90066088 | None:intergenic | 45.0% | |
| TCCTCTTGAGTAAGTGTGAC+AGG | - | chr3_1:90066070-90066089 | None:intergenic | 45.0% | |
| CACACTTACTCAAGAGGAAC+AGG | + | chr3_1:90066072-90066091 | Msa0386280:CDS | 45.0% | |
| ACTTACTCAAGAGGAACAGG+CGG | + | chr3_1:90066075-90066094 | Msa0386280:CDS | 45.0% | |
| ! | CCCACAGTTTTCCTTAAGGA+AGG | + | chr3_1:90066139-90066158 | Msa0386280:CDS | 45.0% |
| GAACTGAGTCTCCTTCCTTA+AGG | - | chr3_1:90066153-90066172 | None:intergenic | 45.0% | |
| TTGATCCCGATACAATCAGG+TGG | + | chr3_1:90066182-90066201 | Msa0386280:CDS | 45.0% | |
| GGAATCCACCTGATTGTATC+GGG | - | chr3_1:90066190-90066209 | None:intergenic | 45.0% | |
| TCTGTAGAGGTGGTTGCAAA+GGG | - | chr3_1:90066223-90066242 | None:intergenic | 45.0% | |
| ATCTGTAGAGGTGGTTGCAA+AGG | - | chr3_1:90066224-90066243 | None:intergenic | 45.0% | |
| GCAACCACCTCTACAGATAT+CGG | + | chr3_1:90066226-90066245 | Msa0386280:CDS | 45.0% | |
| TGCTCAGCTTGAATACGGAA+AGG | - | chr3_1:90066295-90066314 | None:intergenic | 45.0% | |
| CCTCATGCTCAGCTTGAATA+CGG | - | chr3_1:90066300-90066319 | None:intergenic | 45.0% | |
| CCTAGTTGCTAAGGATTTGG+GGG | + | chr3_1:90066436-90066455 | Msa0386280:intron | 45.0% | |
| TTGCTAAGGATTTGGGGGTT+TGG | + | chr3_1:90066441-90066460 | Msa0386280:intron | 45.0% | |
| GCTTGACATTGAGACACTTG+TGG | + | chr3_1:90066600-90066619 | Msa0386280:intron | 45.0% | |
| ! | GACCCCTAATGAAGAGTGTA+TGG | + | chr3_1:90066753-90066772 | Msa0386280:intron | 45.0% |
| ! | CGGACTGCTGTCTAATTTTG+AGG | - | chr3_1:90067116-90067135 | None:intergenic | 45.0% |
| GACAGCAGTCCGAATAACTT+TGG | + | chr3_1:90067124-90067143 | Msa0386280:CDS | 45.0% | |
| ! | AGTTAGTCTCGTAGCACGAA+GGG | - | chr3_1:90067371-90067390 | None:intergenic | 45.0% |
| ! | AAGTTAGTCTCGTAGCACGA+AGG | - | chr3_1:90067372-90067391 | None:intergenic | 45.0% |
| GTGTTTGGAAGAGGGAGCAA+TGG | + | chr3_1:90064606-90064625 | Msa0386280:five_prime_UTR | 50.0% | |
| GGAAGAGGGAGCAATGGAAA+TGG | + | chr3_1:90064612-90064631 | Msa0386280:five_prime_UTR | 50.0% | |
| ! | CAGAAATTGCGGCATTGGGA+TGG | - | chr3_1:90064961-90064980 | None:intergenic | 50.0% |
| CATCCCAATGCCGCAATTTC+TGG | + | chr3_1:90064959-90064978 | Msa0386280:CDS | 50.0% | |
| GCTACCAGAAATTGCGGCAT+TGG | - | chr3_1:90064966-90064985 | None:intergenic | 50.0% | |
| ACAAGATCAGCTACGGAACC+AGG | - | chr3_1:90065186-90065205 | None:intergenic | 50.0% | |
| AAAGTGGGTCACCAGGGATA+AGG | - | chr3_1:90065474-90065493 | None:intergenic | 50.0% | |
| CAGGCGAATCGGGTAAAAGT+GGG | - | chr3_1:90065489-90065508 | None:intergenic | 50.0% | |
| AAACATGCACCAGGCGAATC+GGG | - | chr3_1:90065499-90065518 | None:intergenic | 50.0% | |
| CAAACATGCACCAGGCGAAT+CGG | - | chr3_1:90065500-90065519 | None:intergenic | 50.0% | |
| TAAGTGTGACAGGGGCTAAC+CGG | - | chr3_1:90066060-90066079 | None:intergenic | 50.0% | |
| CCCTGTCACACTTACTCAAG+AGG | + | chr3_1:90066066-90066085 | Msa0386280:CDS | 50.0% | |
| ! | GCGTCCCACAGTTTTCCTTA+AGG | + | chr3_1:90066135-90066154 | Msa0386280:CDS | 50.0% |
| GTATCGGGATCAACATCTGG+AGG | - | chr3_1:90066175-90066194 | None:intergenic | 50.0% | |
| GTTGCAAAGGGATGATTCGC+AGG | - | chr3_1:90066211-90066230 | None:intergenic | 50.0% | |
| CTCACCGATATCTGTAGAGG+TGG | - | chr3_1:90066233-90066252 | None:intergenic | 50.0% | |
| CACCTCTACAGATATCGGTG+AGG | + | chr3_1:90066231-90066250 | Msa0386280:CDS | 50.0% | |
| GTCCTCACCGATATCTGTAG+AGG | - | chr3_1:90066236-90066255 | None:intergenic | 50.0% | |
| CCGTATTCAAGCTGAGCATG+AGG | + | chr3_1:90066297-90066316 | Msa0386280:CDS | 50.0% | |
| GGCTTCAAGCTTTCTCTGCA+GGG | - | chr3_1:90066323-90066342 | None:intergenic | 50.0% | |
| CCCCCAAATCCTTAGCAACT+AGG | - | chr3_1:90066439-90066458 | None:intergenic | 50.0% | |
| !!! | GGATTTGGGGGTTTGGCTTT+TGG | + | chr3_1:90066448-90066467 | Msa0386280:intron | 50.0% |
| AATCTGCCATGGGAGTCGAA+TGG | - | chr3_1:90067040-90067059 | None:intergenic | 50.0% | |
| TTAGTCTCGTAGCACGAAGG+GGG | - | chr3_1:90067369-90067388 | None:intergenic | 50.0% | |
| ! | GTTAGTCTCGTAGCACGAAG+GGG | - | chr3_1:90067370-90067389 | None:intergenic | 50.0% |
| CGTGAGGCTAACCTTATCCC+TGG | + | chr3_1:90065460-90065479 | Msa0386280:intron | 55.0% | |
| CGGGTAAAAGTGGGTCACCA+GGG | - | chr3_1:90065480-90065499 | None:intergenic | 55.0% | |
| TCGGGTAAAAGTGGGTCACC+AGG | - | chr3_1:90065481-90065500 | None:intergenic | 55.0% | |
| CCAGGCGAATCGGGTAAAAG+TGG | - | chr3_1:90065490-90065509 | None:intergenic | 55.0% | |
| !! | CCACTTTTACCCGATTCGCC+TGG | + | chr3_1:90065487-90065506 | Msa0386280:intron | 55.0% |
| CGATTCGCCTGGTGCATGTT+TGG | + | chr3_1:90065498-90065517 | Msa0386280:intron | 55.0% | |
| AACAGGCGGTTCACCAGAGA+AGG | + | chr3_1:90066089-90066108 | Msa0386280:CDS | 55.0% | |
| ACGCACGTGATCTCCTTCTC+TGG | - | chr3_1:90066105-90066124 | None:intergenic | 55.0% | |
| GGAGATCACGTGCGTATCAG+TGG | + | chr3_1:90066110-90066129 | Msa0386280:CDS | 55.0% | |
| GGGCTTCAAGCTTTCTCTGC+AGG | - | chr3_1:90066324-90066343 | None:intergenic | 55.0% | |
| GAGAGACCATTCGACTCCCA+TGG | + | chr3_1:90067031-90067050 | Msa0386280:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90064587 | 90067398 | 90064587 | ID=Msa0386280;Name=Msa0386280 |
| chr3_1 | mRNA | 90064587 | 90067398 | 90064587 | ID=Msa0386280-mRNA-1;Parent=Msa0386280;Name=Msa0386280-mRNA-1;_AED=0.13;_eAED=0.13;_QI=80|1|1|1|0.75|0.6|5|209|327 |
| chr3_1 | exon | 90064587 | 90064711 | 90064587 | ID=Msa0386280-mRNA-1:exon:24719;Parent=Msa0386280-mRNA-1 |
| chr3_1 | exon | 90064807 | 90064980 | 90064807 | ID=Msa0386280-mRNA-1:exon:24720;Parent=Msa0386280-mRNA-1 |
| chr3_1 | exon | 90065075 | 90065241 | 90065075 | ID=Msa0386280-mRNA-1:exon:24721;Parent=Msa0386280-mRNA-1 |
| chr3_1 | exon | 90065964 | 90066351 | 90065964 | ID=Msa0386280-mRNA-1:exon:24722;Parent=Msa0386280-mRNA-1 |
| chr3_1 | exon | 90066980 | 90067398 | 90066980 | ID=Msa0386280-mRNA-1:exon:24723;Parent=Msa0386280-mRNA-1 |
| chr3_1 | five_prime_UTR | 90064587 | 90064666 | 90064587 | ID=Msa0386280-mRNA-1:five_prime_utr;Parent=Msa0386280-mRNA-1 |
| chr3_1 | CDS | 90064667 | 90064711 | 90064667 | ID=Msa0386280-mRNA-1:cds;Parent=Msa0386280-mRNA-1 |
| chr3_1 | CDS | 90064807 | 90064980 | 90064807 | ID=Msa0386280-mRNA-1:cds;Parent=Msa0386280-mRNA-1 |
| chr3_1 | CDS | 90065075 | 90065241 | 90065075 | ID=Msa0386280-mRNA-1:cds;Parent=Msa0386280-mRNA-1 |
| chr3_1 | CDS | 90065964 | 90066351 | 90065964 | ID=Msa0386280-mRNA-1:cds;Parent=Msa0386280-mRNA-1 |
| chr3_1 | CDS | 90066980 | 90067189 | 90066980 | ID=Msa0386280-mRNA-1:cds;Parent=Msa0386280-mRNA-1 |
| chr3_1 | three_prime_UTR | 90067190 | 90067398 | 90067190 | ID=Msa0386280-mRNA-1:three_prime_utr;Parent=Msa0386280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
