AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685500 MtrunA17_Chr4g0033841 97.817 229 5 0 1 229 1 229 6.22e-165 454
Msa0685500 MtrunA17_Chr8g0382711 27.568 185 117 4 41 218 29 203 1.14e-17 78.6
Msa0685500 MtrunA17_Chr4g0052911 33.918 171 92 5 55 218 80 236 3.16e-16 75.1
Msa0685500 MtrunA17_Chr8g0377771 40.367 109 60 3 111 218 36 140 3.77e-16 77.0
Msa0685500 MtrunA17_Chr8g0335211 40.449 89 53 0 108 196 95 183 7.14e-15 70.9
Msa0685500 MtrunA17_Chr8g0339141 40.860 93 51 2 126 218 54 142 7.19e-14 70.1
Msa0685500 MtrunA17_Chr8g0339171 38.000 100 58 2 130 229 50 145 4.63e-13 64.7
Msa0685500 MtrunA17_Chr5g0396231 40.678 118 55 5 112 223 393 501 1.44e-12 66.2
Msa0685500 MtrunA17_Chr7g0255551 36.559 93 55 2 126 218 35 123 8.04e-12 64.3
Msa0685500 MtrunA17_Chr7g0234801 36.735 98 57 3 122 218 43 136 3.79e-11 62.0
Msa0685500 MtrunA17_Chr7g0214751 35.780 109 58 4 108 205 97 204 6.57e-11 60.5
Msa0685500 MtrunA17_Chr1g0179681 37.815 119 58 5 109 218 129 240 9.33e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685500 AT2G43560.1 68.122 229 67 2 1 229 1 223 8.70e-101 292
Msa0685500 AT2G43560.2 82.424 165 29 0 65 229 3 167 1.08e-93 272
Msa0685500 AT5G45680.1 37.500 128 71 3 101 221 80 205 9.54e-18 79.0
Msa0685500 AT4G39710.1 37.190 121 68 3 111 223 93 213 2.93e-16 75.1
Msa0685500 AT4G39710.3 37.190 121 68 3 111 223 93 213 2.93e-16 75.1
Msa0685500 AT5G48580.1 40.449 89 49 2 130 218 52 136 4.65e-14 68.2
Msa0685500 AT3G60370.1 36.937 111 69 1 87 196 94 204 5.16e-14 69.3
Msa0685500 AT3G25220.1 39.362 94 53 2 130 223 52 141 7.09e-14 67.4
Msa0685500 AT3G60370.2 36.937 111 69 1 87 196 123 233 7.74e-14 69.3
Msa0685500 AT5G05420.1 43.333 90 44 3 130 218 56 139 3.07e-13 65.5
Msa0685500 AT3G25230.1 36.697 109 64 3 111 218 37 141 4.55e-12 65.5
Msa0685500 AT3G25230.2 36.697 109 64 3 111 218 37 141 5.32e-12 65.1
Msa0685500 AT5G48570.1 36.283 113 67 3 107 218 41 149 2.96e-11 62.8
Msa0685500 AT4G25340.1 38.182 110 60 5 112 218 369 473 3.19e-11 62.8

Find 86 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTCTCTGCTTATTATTA+TGG 0.134912 4_4:+49637840 None:intergenic
TTCAATTTCCATACCTAAAA+TGG 0.140163 4_4:-49637967 Msa0685500:three_prime_UTR
GGAGCCACCCTTGGTCTTCC+TGG 0.209095 4_4:+49638244 None:intergenic
CAAGTTTCATCACATAATTT+TGG 0.254636 4_4:+49640349 None:intergenic
GTGCAGAATTAAGGCCTTTA+GGG 0.275774 4_4:+49638266 None:intergenic
CATTCATTTGATGCTGCTAA+TGG 0.284118 4_4:-49640397 Msa0685500:CDS
GGTGCAGAATTAAGGCCTTT+AGG 0.289156 4_4:+49638265 None:intergenic
GTCTTCCTGGTGCAGAATTA+AGG 0.291862 4_4:+49638257 None:intergenic
CAAACTAGACAAACTAGATT+TGG 0.295021 4_4:-49640806 None:intergenic
AATTCACGTAGAGACTTTCT+TGG 0.312447 4_4:-49640451 Msa0685500:CDS
CTTTATTCTACCCGAGCTTT+TGG 0.321623 4_4:-49637883 Msa0685500:three_prime_UTR
ATGAGATATCAGGTGATAAA+AGG 0.326010 4_4:-49638636 Msa0685500:intron
AGTAGTATTTGATGTAAGTT+TGG 0.332631 4_4:-49638212 Msa0685500:CDS
TAGTCCACCAGTTGGATATC+AGG 0.360762 4_4:-49639715 Msa0685500:intron
AAGAAAGTCTCTACGTGAAT+TGG 0.368565 4_4:+49640453 None:intergenic
CATAATAATAAGCAGAGAAC+AGG 0.368619 4_4:-49637839 Msa0685500:three_prime_UTR
GACTTTCTTGGATTAGCATT+AGG 0.374464 4_4:-49640439 Msa0685500:CDS
CAATACAAGGATATTAAAGT+TGG 0.375129 4_4:-49639747 Msa0685500:CDS
TCAAATACTACTGGACTGTT+TGG 0.387721 4_4:+49638223 None:intergenic
CATCTGGACAAATATTTGAT+AGG 0.389186 4_4:-49639170 Msa0685500:intron
GTGATGGTGATAAATTGAAT+TGG 0.399389 4_4:+49638114 None:intergenic
TTCTCAACAGAAATGCTTTG+AGG 0.406961 4_4:+49640547 None:intergenic
CTCCTACTTTCATGCTCAAA+AGG 0.417335 4_4:+49638601 None:intergenic
TAAAGAGATCATATTCCTCT+TGG 0.428915 4_4:+49637901 None:intergenic
ATAGTATATCATGGATTCTC+TGG 0.430893 4_4:-49637927 Msa0685500:three_prime_UTR
AGATTCAGCTTCAATGTACT+TGG 0.436583 4_4:+49638005 None:intergenic
ATGATGTTATTGTTTGCAAA+TGG 0.440480 4_4:+49640773 None:intergenic
CCTATGGTAACTACTGAATC+AGG 0.444760 4_4:-49639774 Msa0685500:CDS
TATGTTGCAATGGTTCCATC+TGG 0.446081 4_4:-49639186 Msa0685500:CDS
TTTGATGCTGCTAATGGAGC+TGG 0.447449 4_4:-49640391 Msa0685500:CDS
ATGACACAATATTACATCCT+TGG 0.447775 4_4:-49640744 Msa0685500:five_prime_UTR
AAACTTACATCAAATACTAC+TGG 0.453698 4_4:+49638214 None:intergenic
TGATATCCAACTGGTGGACT+AGG 0.460176 4_4:+49639717 None:intergenic
GGACTGTTTGGAGCCACCCT+TGG 0.463548 4_4:+49638235 None:intergenic
TGATGGTGATAAATTGAATT+GGG 0.468025 4_4:+49638115 None:intergenic
TCTCTGCTTATTATTATGGT+TGG 0.470296 4_4:+49637844 None:intergenic
AGACAGAAGCTTACTGATCC+AGG 0.482305 4_4:+49638558 None:intergenic
CGTGGATGAGGAATAAACTT+AGG 0.489097 4_4:-49638170 Msa0685500:exon
TCGCAGTTGGCATTCCCTAA+AGG 0.493586 4_4:-49638280 Msa0685500:intron
TTACACACCTGATATCCAAC+TGG 0.497134 4_4:+49639708 None:intergenic
TCCTCATCCACGTCAAGTCC+TGG 0.497402 4_4:+49638181 None:intergenic
TTTATGCATGAAGGTACCTA+TGG 0.499177 4_4:-49639790 Msa0685500:intron
AATACAAGGATATTAAAGTT+GGG 0.500943 4_4:-49639746 Msa0685500:CDS
CATTAGCAGCATCAAATGAA+TGG 0.505775 4_4:+49640398 None:intergenic
CTGTCATCGATAGTATATCA+TGG 0.512913 4_4:-49637936 Msa0685500:three_prime_UTR
AAACGTCGGCTGTACATACC+TGG 0.513530 4_4:-49638576 Msa0685500:CDS
GTTATTGTTTGCAAATGGAA+TGG 0.514203 4_4:+49640778 None:intergenic
TGCGTTCAGTCAAGGTGGAA+TGG 0.516263 4_4:+49638143 None:intergenic
GAGAACAGGGAACATGTTAA+CGG 0.518782 4_4:-49637825 Msa0685500:three_prime_UTR
CACCATTTGACCAAAAGCTC+GGG 0.520559 4_4:+49637873 None:intergenic
CTATCAAATATTTGTCCAGA+TGG 0.522457 4_4:+49639171 None:intergenic
CCACCATTTGACCAAAAGCT+CGG 0.529970 4_4:+49637872 None:intergenic
TGAATCAGGTTTGCAATACA+AGG 0.531477 4_4:-49639760 Msa0685500:CDS
AGGACTTACAAAGTGGAAGC+AGG 0.541635 4_4:+49640696 None:intergenic
ATCCTTGGATATGCCTAGCA+TGG 0.544626 4_4:-49640729 Msa0685500:exon
GTGATAAAAGGACTTGATGA+AGG 0.565095 4_4:-49638624 Msa0685500:CDS
ACCAGGACTTGACGTGGATG+AGG 0.572224 4_4:-49638182 Msa0685500:CDS
TACAAAGTGGAAGCAGGAGA+GGG 0.573806 4_4:+49640702 None:intergenic
GGCTGCTAATTATGTTGCAA+TGG 0.576500 4_4:-49639196 Msa0685500:CDS
CATGATATACTATCGATGAC+AGG 0.577750 4_4:+49637937 None:intergenic
GGGTTGACTGCGTTCAGTCA+AGG 0.578018 4_4:+49638135 None:intergenic
GATATCCAACTGGTGGACTA+GGG 0.580308 4_4:+49639718 None:intergenic
AGGAGAGGGGAAGCCATGCT+AGG 0.580475 4_4:+49640716 None:intergenic
CTTTGAGGAGCAGTAAGAGA+AGG 0.581278 4_4:+49640562 None:intergenic
AAGTGAAGTCCACAGAGACA+AGG 0.592596 4_4:-49640504 Msa0685500:CDS
GTAAGTTTGGAATATGTACC+AGG 0.597022 4_4:-49638199 Msa0685500:CDS
AGTGCATTCCCTTGTCTCTG+TGG 0.600039 4_4:+49640495 None:intergenic
CAAGGCCCTAGTCCACCAGT+TGG 0.601514 4_4:-49639723 Msa0685500:CDS
AAAGGCCTTAATTCTGCACC+AGG 0.603111 4_4:-49638262 Msa0685500:CDS
CCTGATTCAGTAGTTACCAT+AGG 0.608091 4_4:+49639774 None:intergenic
CACACCTGATATCCAACTGG+TGG 0.614939 4_4:+49639711 None:intergenic
AAGGATATTAAAGTTGGGCA+AGG 0.616109 4_4:-49639741 Msa0685500:CDS
TTACAAAGTGGAAGCAGGAG+AGG 0.616382 4_4:+49640701 None:intergenic
AGTGAAGTCCACAGAGACAA+GGG 0.625615 4_4:-49640503 Msa0685500:CDS
ACAATTGTATAAGATAGTGA+TGG 0.629046 4_4:+49638098 None:intergenic
AGCCATGCTAGGCATATCCA+AGG 0.638646 4_4:+49640727 None:intergenic
TGCACCAGGAAGACCAAGGG+TGG 0.644156 4_4:-49638248 Msa0685500:CDS
ACAAAGTGGAAGCAGGAGAG+GGG 0.648340 4_4:+49640703 None:intergenic
TTCTGCACCAGGAAGACCAA+GGG 0.663256 4_4:-49638251 Msa0685500:CDS
ATAATAATAAGCAGAGAACA+GGG 0.670910 4_4:-49637838 Msa0685500:three_prime_UTR
TGAAAGTAGGAGGGAAACGT+CGG 0.675740 4_4:-49638590 Msa0685500:CDS
GGATGTAATATTGTGTCATG+TGG 0.676551 4_4:+49640748 None:intergenic
TGGATTCTCTGGTCTCCAAG+AGG 0.680434 4_4:-49637916 Msa0685500:three_prime_UTR
TTGACTGCGTTCAGTCAAGG+TGG 0.698133 4_4:+49638138 None:intergenic
ATTCTGCACCAGGAAGACCA+AGG 0.707291 4_4:-49638252 Msa0685500:CDS
ATATGTACCAGGACTTGACG+TGG 0.731552 4_4:-49638188 Msa0685500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTATCTACTAAAATT+AGG - chr4_4:49638417-49638436 Msa0685500:intron 10.0%
!! AATATATTAATCATTTGATA+AGG + chr4_4:49639273-49639292 None:intergenic 10.0%
!! ATATTAACATAATAATCAAT+TGG - chr4_4:49639606-49639625 Msa0685500:intron 10.0%
!!! TATTTTTCAAAAAACATTTA+AGG + chr4_4:49639902-49639921 None:intergenic 10.0%
!!! TTTTAGTAGATAAATATTGA+AGG + chr4_4:49638415-49638434 None:intergenic 15.0%
!!! ATATAAATTTAGAGTATCAT+AGG + chr4_4:49639072-49639091 None:intergenic 15.0%
!!! TTTTATATAGATTCTACTTG+TGG - chr4_4:49638024-49638043 Msa0685500:three_prime_UTR 20.0%
!!! TATGTGACTAAAAATGTTTT+CGG - chr4_4:49638464-49638483 Msa0685500:intron 20.0%
!!! ATGTTTTCGGTTAAAAAAAT+TGG - chr4_4:49638477-49638496 Msa0685500:intron 20.0%
!!! TGTTTTCGGTTAAAAAAATT+GGG - chr4_4:49638478-49638497 Msa0685500:intron 20.0%
!! TCATTAACTATCGATATTAA+TGG + chr4_4:49638792-49638811 None:intergenic 20.0%
!! AATACAAGGATATTAAAGTT+GGG - chr4_4:49638870-49638889 Msa0685500:intron 20.0%
!! AAGATACAAATCAAGTATTT+AGG + chr4_4:49639021-49639040 None:intergenic 20.0%
!!! AAATACTTGATTTGTATCTT+AGG - chr4_4:49639021-49639040 Msa0685500:intron 20.0%
!!! TACTTGTTTCTTTCTAAATT+TGG + chr4_4:49639632-49639651 None:intergenic 20.0%
!!! TATTGTAATTTGTAATGCTT+TGG - chr4_4:49639657-49639676 Msa0685500:intron 20.0%
!!! TACAATTGTTAATTCTTTTG+AGG - chr4_4:49640532-49640551 Msa0685500:CDS 20.0%
! ATGATGTTATTGTTTGCAAA+TGG + chr4_4:49637846-49637865 None:intergenic 25.0%
! CAGTATTATTTATGCATTGT+TGG + chr4_4:49637970-49637989 None:intergenic 25.0%
!!! CATAATTTTGGTTTTTCTTC+TGG + chr4_4:49638258-49638277 None:intergenic 25.0%
!! CAAGTTTCATCACATAATTT+TGG + chr4_4:49638270-49638289 None:intergenic 25.0%
! ATTTGTGAAGAACCTTATAA+TGG + chr4_4:49638589-49638608 None:intergenic 25.0%
! CAATACAAGGATATTAAAGT+TGG - chr4_4:49638869-49638888 Msa0685500:intron 25.0%
! AGTAATCCTATATCATTATC+AGG + chr4_4:49639148-49639167 None:intergenic 25.0%
! GATTGACAGAAATTTGTAAT+CGG + chr4_4:49639478-49639497 None:intergenic 25.0%
!! AGAAGTACACTATATTTACA+TGG + chr4_4:49640153-49640172 None:intergenic 25.0%
! CTGAAAGTTTATTTACAGAT+TGG - chr4_4:49640266-49640285 Msa0685500:intron 25.0%
! TAAGTACTTAATTCTAACGT+TGG - chr4_4:49640289-49640308 Msa0685500:intron 25.0%
! AAACTTACATCAAATACTAC+TGG + chr4_4:49640405-49640424 None:intergenic 25.0%
! AGTAGTATTTGATGTAAGTT+TGG - chr4_4:49640404-49640423 Msa0685500:CDS 25.0%
!! TGATGGTGATAAATTGAATT+GGG + chr4_4:49640504-49640523 None:intergenic 25.0%
! ACAATTGTATAAGATAGTGA+TGG + chr4_4:49640521-49640540 None:intergenic 25.0%
! TTCAATTTCCATACCTAAAA+TGG - chr4_4:49640649-49640668 Msa0685500:intron 25.0%
!!! GTTTAATACCATTTTAGGTA+TGG + chr4_4:49640660-49640679 None:intergenic 25.0%
! ATAATAATAAGCAGAGAACA+GGG - chr4_4:49640778-49640797 Msa0685500:five_prime_UTR 25.0%
GTTATTGTTTGCAAATGGAA+TGG + chr4_4:49637841-49637860 None:intergenic 30.0%
ATGACACAATATTACATCCT+TGG - chr4_4:49637872-49637891 Msa0685500:three_prime_UTR 30.0%
!!! AATTTTGGTTTTTCTTCTGG+TGG + chr4_4:49638255-49638274 None:intergenic 30.0%
AGAAAGAGCTTGAAAATGTA+TGG - chr4_4:49638292-49638311 Msa0685500:intron 30.0%
GTAGACATTAATCACAGTTA+AGG + chr4_4:49638344-49638363 None:intergenic 30.0%
AAAACTTGCAATGAAATGAC+AGG + chr4_4:49638654-49638673 None:intergenic 30.0%
! ACTGAGTATTTTATGCATGA+AGG - chr4_4:49638817-49638836 Msa0685500:intron 30.0%
!! CATTGACTGCATTTTTGAAA+TGG + chr4_4:49638976-49638995 None:intergenic 30.0%
! TTCAGTATTTTCTACGTAGA+AGG + chr4_4:49639104-49639123 None:intergenic 30.0%
! GGTACTGAAATCATCAATAT+TGG + chr4_4:49639127-49639146 None:intergenic 30.0%
! TCAGTACCTGATAATGATAT+AGG - chr4_4:49639139-49639158 Msa0685500:intron 30.0%
! CTTTAGCTAGTTTAGATTGA+AGG + chr4_4:49639240-49639259 None:intergenic 30.0%
! TTTTCATGTGCTTATCTGAT+AGG - chr4_4:49639396-49639415 Msa0685500:intron 30.0%
CTATCAAATATTTGTCCAGA+TGG + chr4_4:49639448-49639467 None:intergenic 30.0%
CATCTGGACAAATATTTGAT+AGG - chr4_4:49639446-49639465 Msa0685500:intron 30.0%
AATCATGCCTAATAAGATGT+TGG - chr4_4:49639577-49639596 Msa0685500:intron 30.0%
AACTGAAAAAGGAATGATCA+AGG + chr4_4:49639691-49639710 None:intergenic 30.0%
AGATGACAGAAAACTGAAAA+AGG + chr4_4:49639702-49639721 None:intergenic 30.0%
! TTTCTGTCATCTTTCGATTT+TGG - chr4_4:49639710-49639729 Msa0685500:intron 30.0%
!!! TTTTTGAAGCTGTTGTCTTT+GGG - chr4_4:49639733-49639752 Msa0685500:CDS 30.0%
ATAACTGAGCATTCTAATGA+AGG + chr4_4:49639760-49639779 None:intergenic 30.0%
ATGAGCTGTAAAATTGGAAA+GGG + chr4_4:49639830-49639849 None:intergenic 30.0%
AATGAGCTGTAAAATTGGAA+AGG + chr4_4:49639831-49639850 None:intergenic 30.0%
! TTTCCAATTTTACAGCTCAT+TGG - chr4_4:49639830-49639849 Msa0685500:intron 30.0%
TGAAAGGATTATCAAACACT+AGG + chr4_4:49639937-49639956 None:intergenic 30.0%
TAATCCTTTCAAAGACTAAC+TGG - chr4_4:49639946-49639965 Msa0685500:intron 30.0%
!! AATACCAGTTAGTCTTTGAA+AGG + chr4_4:49639953-49639972 None:intergenic 30.0%
TTTATCACCTGATATCTCAT+CGG + chr4_4:49639980-49639999 None:intergenic 30.0%
ATGAGATATCAGGTGATAAA+AGG - chr4_4:49639980-49639999 Msa0685500:intron 30.0%
!! GTCAATGCACATTTTAAGTA+TGG + chr4_4:49640199-49640218 None:intergenic 30.0%
! AATGTGCATTGACAACATAA+TGG - chr4_4:49640206-49640225 Msa0685500:intron 30.0%
TGACAACATAATGGTGTAAA+AGG - chr4_4:49640215-49640234 Msa0685500:intron 30.0%
! GTGATGGTGATAAATTGAAT+TGG + chr4_4:49640505-49640524 None:intergenic 30.0%
! GACAGGTTTAATACCATTTT+AGG + chr4_4:49640665-49640684 None:intergenic 30.0%
ATAGTATATCATGGATTCTC+TGG - chr4_4:49640689-49640708 Msa0685500:intron 30.0%
TAAAGAGATCATATTCCTCT+TGG + chr4_4:49640718-49640737 None:intergenic 30.0%
TCTCTGCTTATTATTATGGT+TGG + chr4_4:49640775-49640794 None:intergenic 30.0%
CTGTTCTCTGCTTATTATTA+TGG + chr4_4:49640779-49640798 None:intergenic 30.0%
CATAATAATAAGCAGAGAAC+AGG - chr4_4:49640777-49640796 Msa0685500:five_prime_UTR 30.0%
GGATGTAATATTGTGTCATG+TGG + chr4_4:49637871-49637890 None:intergenic 35.0%
AAGTGAAAGGACTTACAAAG+TGG + chr4_4:49637930-49637949 None:intergenic 35.0%
TGAGGAAAAGAGAAAGTGAA+AGG + chr4_4:49637943-49637962 None:intergenic 35.0%
TTATGCATTGTTGGATAGTG+AGG + chr4_4:49637961-49637980 None:intergenic 35.0%
TTCTCAACAGAAATGCTTTG+AGG + chr4_4:49638072-49638091 None:intergenic 35.0%
AAGAAAGTCTCTACGTGAAT+TGG + chr4_4:49638166-49638185 None:intergenic 35.0%
AATTCACGTAGAGACTTTCT+TGG - chr4_4:49638165-49638184 Msa0685500:exon 35.0%
!! GACTTTCTTGGATTAGCATT+AGG - chr4_4:49638177-49638196 Msa0685500:CDS 35.0%
CATTAGCAGCATCAAATGAA+TGG + chr4_4:49638221-49638240 None:intergenic 35.0%
CATTCATTTGATGCTGCTAA+TGG - chr4_4:49638219-49638238 Msa0685500:CDS 35.0%
TCACAGTTAAGGCATAGAAA+GGG + chr4_4:49638333-49638352 None:intergenic 35.0%
ATCACAGTTAAGGCATAGAA+AGG + chr4_4:49638334-49638353 None:intergenic 35.0%
CTCTTAAAACGTTTGACGAA+AGG - chr4_4:49638559-49638578 Msa0685500:intron 35.0%
ACGAAAGGACTTCCATTATA+AGG - chr4_4:49638574-49638593 Msa0685500:CDS 35.0%
!! TTTATGCATGAAGGTACCTA+TGG - chr4_4:49638826-49638845 Msa0685500:intron 35.0%
TGAATCAGGTTTGCAATACA+AGG - chr4_4:49638856-49638875 Msa0685500:intron 35.0%
AAGGATATTAAAGTTGGGCA+AGG - chr4_4:49638875-49638894 Msa0685500:intron 35.0%
!!! TGACTGCATTTTTGAAATGG+TGG + chr4_4:49638973-49638992 None:intergenic 35.0%
GCATCAATCTCGTTCAAAAT+TGG + chr4_4:49638999-49639018 None:intergenic 35.0%
AGTTTAGATTGAAGGAAGCA+AGG + chr4_4:49639232-49639251 None:intergenic 35.0%
TGACAGAAATTTGTAATCGG+CGG + chr4_4:49639475-49639494 None:intergenic 35.0%
ATACAACAGCAAACATCACT+TGG + chr4_4:49639528-49639547 None:intergenic 35.0%
TCACACTCCAACATCTTATT+AGG + chr4_4:49639587-49639606 None:intergenic 35.0%
!!! GTTTTTGAAGCTGTTGTCTT+TGG - chr4_4:49639732-49639751 Msa0685500:CDS 35.0%
TGTATGCACTGTAATGAGAA+TGG - chr4_4:49639781-49639800 Msa0685500:intron 35.0%
TCTCCAATGAGCTGTAAAAT+TGG + chr4_4:49639836-49639855 None:intergenic 35.0%
! TTTTACAGCTCATTGGAGAA+AGG - chr4_4:49639837-49639856 Msa0685500:intron 35.0%
TTATCACCTGATATCTCATC+GGG + chr4_4:49639979-49639998 None:intergenic 35.0%
GTGATAAAAGGACTTGATGA+AGG - chr4_4:49639992-49640011 Msa0685500:intron 35.0%
! TTTTGAGCATGAAAGTAGGA+GGG - chr4_4:49640017-49640036 Msa0685500:intron 35.0%
!! GTTTTGAATCTTGCAATGCT+GGG + chr4_4:49640105-49640124 None:intergenic 35.0%
!! TGTTTTGAATCTTGCAATGC+TGG + chr4_4:49640106-49640125 None:intergenic 35.0%
!! GTGTACTTCTAGTTTCTCAA+TGG - chr4_4:49640163-49640182 Msa0685500:intron 35.0%
!! TTCTTTTCTTGTTTCGCAGT+TGG - chr4_4:49640323-49640342 Msa0685500:intron 35.0%
TCAAATACTACTGGACTGTT+TGG + chr4_4:49640396-49640415 None:intergenic 35.0%
! GTAAGTTTGGAATATGTACC+AGG - chr4_4:49640417-49640436 Msa0685500:CDS 35.0%
AGATTCAGCTTCAATGTACT+TGG + chr4_4:49640614-49640633 None:intergenic 35.0%
CATGATATACTATCGATGAC+AGG + chr4_4:49640682-49640701 None:intergenic 35.0%
CTGTCATCGATAGTATATCA+TGG - chr4_4:49640680-49640699 Msa0685500:intron 35.0%
! AGCTTCTGTCAGGGAATTTT+TGG + chr4_4:49638684-49638703 None:intergenic 40.0%
ACTGAACAAAGCTTCTGTCA+GGG + chr4_4:49638693-49638712 None:intergenic 40.0%
CCTGATTCAGTAGTTACCAT+AGG + chr4_4:49638845-49638864 None:intergenic 40.0%
CCTATGGTAACTACTGAATC+AGG - chr4_4:49638842-49638861 Msa0685500:intron 40.0%
TTACACACCTGATATCCAAC+TGG + chr4_4:49638911-49638930 None:intergenic 40.0%
TAGATTGAAGGAAGCAAGGA+CGG + chr4_4:49639228-49639247 None:intergenic 40.0%
AACAATACACATGCTGACAG+AGG + chr4_4:49639352-49639371 None:intergenic 40.0%
TCATGTGCTTATCTGATAGG+TGG - chr4_4:49639399-49639418 Msa0685500:intron 40.0%
GGCTGCTAATTATGTTGCAA+TGG - chr4_4:49639420-49639439 Msa0685500:intron 40.0%
TATGTTGCAATGGTTCCATC+TGG - chr4_4:49639430-49639449 Msa0685500:intron 40.0%
CAACGCGAAAAATGTAAAGC+TGG + chr4_4:49639863-49639882 None:intergenic 40.0%
! CAGCTTTACATTTTTCGCGT+TGG - chr4_4:49639861-49639880 Msa0685500:intron 40.0%
! TACATTTTTCGCGTTGGATC+TGG - chr4_4:49639867-49639886 Msa0685500:intron 40.0%
ATTCAACCCGATGAGATATC+AGG - chr4_4:49639970-49639989 Msa0685500:intron 40.0%
CTCCTACTTTCATGCTCAAA+AGG + chr4_4:49640018-49640037 None:intergenic 40.0%
! CTTTTGAGCATGAAAGTAGG+AGG - chr4_4:49640016-49640035 Msa0685500:intron 40.0%
GTGCAGAATTAAGGCCTTTA+GGG + chr4_4:49640353-49640372 None:intergenic 40.0%
CGTGGATGAGGAATAAACTT+AGG - chr4_4:49640446-49640465 Msa0685500:CDS 40.0%
! CTTTATTCTACCCGAGCTTT+TGG - chr4_4:49640733-49640752 Msa0685500:exon 40.0%
GAGAACAGGGAACATGTTAA+CGG - chr4_4:49640791-49640810 Msa0685500:five_prime_UTR 40.0%
ATCCTTGGATATGCCTAGCA+TGG - chr4_4:49637887-49637906 Msa0685500:three_prime_UTR 45.0%
TACAAAGTGGAAGCAGGAGA+GGG + chr4_4:49637917-49637936 None:intergenic 45.0%
TTACAAAGTGGAAGCAGGAG+AGG + chr4_4:49637918-49637937 None:intergenic 45.0%
AGGACTTACAAAGTGGAAGC+AGG + chr4_4:49637923-49637942 None:intergenic 45.0%
! CTTTGAGGAGCAGTAAGAGA+AGG + chr4_4:49638057-49638076 None:intergenic 45.0%
AAGTGAAGTCCACAGAGACA+AGG - chr4_4:49638112-49638131 Msa0685500:three_prime_UTR 45.0%
AGTGAAGTCCACAGAGACAA+GGG - chr4_4:49638113-49638132 Msa0685500:three_prime_UTR 45.0%
TTTGATGCTGCTAATGGAGC+TGG - chr4_4:49638225-49638244 Msa0685500:CDS 45.0%
TTGAAGGTGACACAACTGCA+TGG + chr4_4:49638399-49638418 None:intergenic 45.0%
CACTGAACAAAGCTTCTGTC+AGG + chr4_4:49638694-49638713 None:intergenic 45.0%
!! CTGACAGAAGCTTTGTTCAG+TGG - chr4_4:49638692-49638711 Msa0685500:intron 45.0%
!! GATATCCAACTGGTGGACTA+GGG + chr4_4:49638901-49638920 None:intergenic 45.0%
!! TGATATCCAACTGGTGGACT+AGG + chr4_4:49638902-49638921 None:intergenic 45.0%
TAGTCCACCAGTTGGATATC+AGG - chr4_4:49638901-49638920 Msa0685500:intron 45.0%
AGATTGAAGGAAGCAAGGAC+GGG + chr4_4:49639227-49639246 None:intergenic 45.0%
! GGCCTTTTGAGCATGAAAGT+AGG - chr4_4:49640013-49640032 Msa0685500:intron 45.0%
TGAAAGTAGGAGGGAAACGT+CGG - chr4_4:49640026-49640045 Msa0685500:intron 45.0%
AGACAGAAGCTTACTGATCC+AGG + chr4_4:49640061-49640080 None:intergenic 45.0%
GGTGCAGAATTAAGGCCTTT+AGG + chr4_4:49640354-49640373 None:intergenic 45.0%
AAAGGCCTTAATTCTGCACC+AGG - chr4_4:49640354-49640373 Msa0685500:CDS 45.0%
GTCTTCCTGGTGCAGAATTA+AGG + chr4_4:49640362-49640381 None:intergenic 45.0%
ATATGTACCAGGACTTGACG+TGG - chr4_4:49640428-49640447 Msa0685500:CDS 45.0%
! TACCCGAGCTTTTGGTCAAA+TGG - chr4_4:49640741-49640760 Msa0685500:exon 45.0%
CACCATTTGACCAAAAGCTC+GGG + chr4_4:49640746-49640765 None:intergenic 45.0%
CCACCATTTGACCAAAAGCT+CGG + chr4_4:49640747-49640766 None:intergenic 45.0%
AGCCATGCTAGGCATATCCA+AGG + chr4_4:49637892-49637911 None:intergenic 50.0%
ACAAAGTGGAAGCAGGAGAG+GGG + chr4_4:49637916-49637935 None:intergenic 50.0%
AGTGCATTCCCTTGTCTCTG+TGG + chr4_4:49638124-49638143 None:intergenic 50.0%
CACACCTGATATCCAACTGG+TGG + chr4_4:49638908-49638927 None:intergenic 50.0%
GCGTTCAAGGGAAACTGAAC+AGG + chr4_4:49638944-49638963 None:intergenic 50.0%
GGAAAGGGTCATACTCACAC+AGG + chr4_4:49639815-49639834 None:intergenic 50.0%
! TTTTCGCGTTGGATCTGGTC+AGG - chr4_4:49639872-49639891 Msa0685500:intron 50.0%
! AAACGTCGGCTGTACATACC+TGG - chr4_4:49640040-49640059 Msa0685500:intron 50.0%
TCGCAGTTGGCATTCCCTAA+AGG - chr4_4:49640336-49640355 Msa0685500:CDS 50.0%
ATTCTGCACCAGGAAGACCA+AGG - chr4_4:49640364-49640383 Msa0685500:CDS 50.0%
TTCTGCACCAGGAAGACCAA+GGG - chr4_4:49640365-49640384 Msa0685500:CDS 50.0%
TGCGTTCAGTCAAGGTGGAA+TGG + chr4_4:49640476-49640495 None:intergenic 50.0%
TTGACTGCGTTCAGTCAAGG+TGG + chr4_4:49640481-49640500 None:intergenic 50.0%
TGGATTCTCTGGTCTCCAAG+AGG - chr4_4:49640700-49640719 Msa0685500:intron 50.0%
! CCGAGCTTTTGGTCAAATGG+TGG - chr4_4:49640744-49640763 Msa0685500:five_prime_UTR 50.0%
TGGTGGAGACGAGCGTTCAA+GGG + chr4_4:49638956-49638975 None:intergenic 55.0%
! ATGGTGGAGACGAGCGTTCA+AGG + chr4_4:49638957-49638976 None:intergenic 55.0%
ACCAGGACTTGACGTGGATG+AGG - chr4_4:49640434-49640453 Msa0685500:CDS 55.0%
TCCTCATCCACGTCAAGTCC+TGG + chr4_4:49640438-49640457 None:intergenic 55.0%
GGGTTGACTGCGTTCAGTCA+AGG + chr4_4:49640484-49640503 None:intergenic 55.0%
AGGAGAGGGGAAGCCATGCT+AGG + chr4_4:49637903-49637922 None:intergenic 60.0%
CAAGGCCCTAGTCCACCAGT+TGG - chr4_4:49638893-49638912 Msa0685500:intron 60.0%
TGCACCAGGAAGACCAAGGG+TGG - chr4_4:49640368-49640387 Msa0685500:CDS 60.0%
! GGACTGTTTGGAGCCACCCT+TGG + chr4_4:49640384-49640403 None:intergenic 60.0%
! GGAGCCACCCTTGGTCTTCC+TGG + chr4_4:49640375-49640394 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 49637817 49640821 49637817 ID=Msa0685500;Name=Msa0685500
chr4_4 mRNA 49637817 49640821 49637817 ID=Msa0685500-mRNA-1;Parent=Msa0685500;Name=Msa0685500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=80|1|1|1|1|1|7|360|229
chr4_4 exon 49637817 49638296 49637817 ID=Msa0685500-mRNA-1:exon:12547;Parent=Msa0685500-mRNA-1
chr4_4 exon 49638572 49638646 49638572 ID=Msa0685500-mRNA-1:exon:12546;Parent=Msa0685500-mRNA-1
chr4_4 exon 49638745 49638793 49638745 ID=Msa0685500-mRNA-1:exon:12545;Parent=Msa0685500-mRNA-1
chr4_4 exon 49639171 49639220 49639171 ID=Msa0685500-mRNA-1:exon:12544;Parent=Msa0685500-mRNA-1
chr4_4 exon 49639716 49639799 49639716 ID=Msa0685500-mRNA-1:exon:12543;Parent=Msa0685500-mRNA-1
chr4_4 exon 49640330 49640604 49640330 ID=Msa0685500-mRNA-1:exon:12542;Parent=Msa0685500-mRNA-1
chr4_4 exon 49640705 49640821 49640705 ID=Msa0685500-mRNA-1:exon:12541;Parent=Msa0685500-mRNA-1
chr4_4 five_prime_UTR 49640742 49640821 49640742 ID=Msa0685500-mRNA-1:five_prime_utr;Parent=Msa0685500-mRNA-1
chr4_4 CDS 49640705 49640741 49640705 ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1
chr4_4 CDS 49640330 49640604 49640330 ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1
chr4_4 CDS 49639716 49639799 49639716 ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1
chr4_4 CDS 49639171 49639220 49639171 ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1
chr4_4 CDS 49638745 49638793 49638745 ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1
chr4_4 CDS 49638572 49638646 49638572 ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1
chr4_4 CDS 49638177 49638296 49638177 ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1
chr4_4 three_prime_UTR 49637817 49638176 49637817 ID=Msa0685500-mRNA-1:three_prime_utr;Parent=Msa0685500-mRNA-1
Gene Sequence

>Msa0685500

ATGCCTAGCATGGCTTCCCCTCTCCTGCTTCCACTTTATTCTACTTGTGGTAAAATTCCTTCTCTTACTGCTCCTCAAAGCATTTCTGTTGAGAAACTTAGAAGATTTGCTCTTAAAGTGAAGTCCACAGAGACAAGGGAATGCACTGCTAATGATATGTTTAATGCCAATTCACGTAGAGACTTTCTTGGATTAGCATTAGGAGTCTCTACTCTATTCATCCATTCATTTGATGCTGCTAATGGAGCTGGTTTGCCACCAGAAGAAAAACCAAAATTATGTGATGAAACTTGTGAGAAAGAGCTTGAAAATGTACCTATGGTAACTACTGAATCAGGTTTGCAATACAAGGATATTAAAGTTGGGCAAGGCCCTAGTCCACCAGTTGGATATCAGGTGGCTGCTAATTATGTTGCAATGGTTCCATCTGGACAAATATTTGATAGCTCATTGGAGAAAGGCCAGCTTTACATTTTTCGCGTTGGATCTGGTCAGGTGATAAAAGGACTTGATGAAGGCCTTTTGAGCATGAAAGTAGGAGGGAAACGTCGGCTGTACATACCTGGATCATTGGCATTCCCTAAAGGCCTTAATTCTGCACCAGGAAGACCAAGGGTGGCTCCAAACAGTCCAGTAGTATTTGATGTAAGTTTGGAATATGTACCAGGACTTGACGTGGATGAGGAATAA

Protein sequence

>Msa0685500

MPSMASPLLLPLYSTCGKIPSLTAPQSISVEKLRRFALKVKSTETRECTANDMFNANSRRDFLGLALGVSTLFIHSFDAANGAGLPPEEKPKLCDETCEKELENVPMVTTESGLQYKDIKVGQGPSPPVGYQVAANYVAMVPSGQIFDSSLEKGQLYIFRVGSGQVIKGLDEGLLSMKVGGKRRLYIPGSLAFPKGLNSAPGRPRVAPNSPVVFDVSLEYVPGLDVDEE*