Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685500 | XP_003606829.2 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 6.76e-161 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685500 | sp|O22870|FK163_ARATH | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.55e-100 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685500 | G7JEW8 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 3.23e-161 | 454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027250 | Msa0685500 | 0.880911 | 3.716263e-70 | -8.615850e-47 |
| Msa0075160 | Msa0685500 | 0.880084 | 7.344965e-70 | -8.615850e-47 |
| Msa0606830 | Msa0685500 | -0.803815 | 2.911372e-49 | -8.615850e-47 |
| Msa0645800 | Msa0685500 | 0.990822 | 1.701200e-184 | -8.615850e-47 |
| Msa0654410 | Msa0685500 | 0.835399 | 1.716899e-56 | -8.615850e-47 |
| Msa0654490 | Msa0685500 | 0.809278 | 2.047818e-50 | -8.615850e-47 |
| Msa0685110 | Msa0685500 | 0.983238 | 3.364677e-157 | -8.615850e-47 |
| Msa0685500 | Msa0719900 | 0.862900 | 3.651216e-64 | -8.615850e-47 |
| Msa0685500 | Msa0784780 | 0.801742 | 7.800843e-49 | -8.615850e-47 |
| Msa0685500 | Msa0804690 | 0.856097 | 4.050539e-62 | -8.615850e-47 |
| Msa0685500 | Msa0858250 | 0.811278 | 7.582620e-51 | -8.615850e-47 |
| Msa0685500 | Msa0882480 | 0.803456 | 3.455745e-49 | -8.615850e-47 |
| Msa0685500 | Msa0922100 | 0.878263 | 3.234965e-69 | -8.615850e-47 |
| Msa0685500 | Msa0960880 | 0.826037 | 3.379668e-54 | -8.615850e-47 |
| Msa0685500 | Msa0994250 | 0.869434 | 3.104572e-66 | -8.615850e-47 |
| Msa0685500 | Msa1163190 | 0.897625 | 1.173214e-76 | -8.615850e-47 |
| Msa0685500 | Msa1173800 | -0.875122 | 3.952262e-68 | -8.615850e-47 |
| Msa0685500 | Msa1238310 | -0.847978 | 8.213680e-60 | -8.615850e-47 |
| Msa0685500 | Msa1256060 | -0.801733 | 7.834162e-49 | -8.615850e-47 |
| Msa0123000 | Msa0685500 | 0.866671 | 2.405068e-65 | -8.615850e-47 |
| Msa0126000 | Msa0685500 | 0.833416 | 5.399694e-56 | -8.615850e-47 |
| Msa0167500 | Msa0685500 | 0.896960 | 2.232314e-76 | -8.615850e-47 |
| Msa0168410 | Msa0685500 | 0.839910 | 1.194156e-57 | -8.615850e-47 |
| Msa0386280 | Msa0685500 | 0.823610 | 1.262620e-53 | -8.615850e-47 |
| Msa0280250 | Msa0685500 | -0.811054 | 8.480022e-51 | -8.615850e-47 |
| Msa0299530 | Msa0685500 | 0.836469 | 9.190730e-57 | -8.615850e-47 |
| Msa0542060 | Msa0685500 | 0.982906 | 2.590291e-156 | -8.615850e-47 |
| Msa0559650 | Msa0685500 | 0.807538 | 4.812966e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685500 | MtrunA17_Chr4g0033841 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 6.22e-165 | 454 |
| Msa0685500 | MtrunA17_Chr8g0382711 | 27.568 | 185 | 117 | 4 | 41 | 218 | 29 | 203 | 1.14e-17 | 78.6 |
| Msa0685500 | MtrunA17_Chr4g0052911 | 33.918 | 171 | 92 | 5 | 55 | 218 | 80 | 236 | 3.16e-16 | 75.1 |
| Msa0685500 | MtrunA17_Chr8g0377771 | 40.367 | 109 | 60 | 3 | 111 | 218 | 36 | 140 | 3.77e-16 | 77.0 |
| Msa0685500 | MtrunA17_Chr8g0335211 | 40.449 | 89 | 53 | 0 | 108 | 196 | 95 | 183 | 7.14e-15 | 70.9 |
| Msa0685500 | MtrunA17_Chr8g0339141 | 40.860 | 93 | 51 | 2 | 126 | 218 | 54 | 142 | 7.19e-14 | 70.1 |
| Msa0685500 | MtrunA17_Chr8g0339171 | 38.000 | 100 | 58 | 2 | 130 | 229 | 50 | 145 | 4.63e-13 | 64.7 |
| Msa0685500 | MtrunA17_Chr5g0396231 | 40.678 | 118 | 55 | 5 | 112 | 223 | 393 | 501 | 1.44e-12 | 66.2 |
| Msa0685500 | MtrunA17_Chr7g0255551 | 36.559 | 93 | 55 | 2 | 126 | 218 | 35 | 123 | 8.04e-12 | 64.3 |
| Msa0685500 | MtrunA17_Chr7g0234801 | 36.735 | 98 | 57 | 3 | 122 | 218 | 43 | 136 | 3.79e-11 | 62.0 |
| Msa0685500 | MtrunA17_Chr7g0214751 | 35.780 | 109 | 58 | 4 | 108 | 205 | 97 | 204 | 6.57e-11 | 60.5 |
| Msa0685500 | MtrunA17_Chr1g0179681 | 37.815 | 119 | 58 | 5 | 109 | 218 | 129 | 240 | 9.33e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0685500 | AT2G43560.1 | 68.122 | 229 | 67 | 2 | 1 | 229 | 1 | 223 | 8.70e-101 | 292 |
| Msa0685500 | AT2G43560.2 | 82.424 | 165 | 29 | 0 | 65 | 229 | 3 | 167 | 1.08e-93 | 272 |
| Msa0685500 | AT5G45680.1 | 37.500 | 128 | 71 | 3 | 101 | 221 | 80 | 205 | 9.54e-18 | 79.0 |
| Msa0685500 | AT4G39710.1 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.93e-16 | 75.1 |
| Msa0685500 | AT4G39710.3 | 37.190 | 121 | 68 | 3 | 111 | 223 | 93 | 213 | 2.93e-16 | 75.1 |
| Msa0685500 | AT5G48580.1 | 40.449 | 89 | 49 | 2 | 130 | 218 | 52 | 136 | 4.65e-14 | 68.2 |
| Msa0685500 | AT3G60370.1 | 36.937 | 111 | 69 | 1 | 87 | 196 | 94 | 204 | 5.16e-14 | 69.3 |
| Msa0685500 | AT3G25220.1 | 39.362 | 94 | 53 | 2 | 130 | 223 | 52 | 141 | 7.09e-14 | 67.4 |
| Msa0685500 | AT3G60370.2 | 36.937 | 111 | 69 | 1 | 87 | 196 | 123 | 233 | 7.74e-14 | 69.3 |
| Msa0685500 | AT5G05420.1 | 43.333 | 90 | 44 | 3 | 130 | 218 | 56 | 139 | 3.07e-13 | 65.5 |
| Msa0685500 | AT3G25230.1 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 4.55e-12 | 65.5 |
| Msa0685500 | AT3G25230.2 | 36.697 | 109 | 64 | 3 | 111 | 218 | 37 | 141 | 5.32e-12 | 65.1 |
| Msa0685500 | AT5G48570.1 | 36.283 | 113 | 67 | 3 | 107 | 218 | 41 | 149 | 2.96e-11 | 62.8 |
| Msa0685500 | AT4G25340.1 | 38.182 | 110 | 60 | 5 | 112 | 218 | 369 | 473 | 3.19e-11 | 62.8 |
Find 86 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTCTGCTTATTATTA+TGG | 0.134912 | 4_4:+49637840 | None:intergenic |
| TTCAATTTCCATACCTAAAA+TGG | 0.140163 | 4_4:-49637967 | Msa0685500:three_prime_UTR |
| GGAGCCACCCTTGGTCTTCC+TGG | 0.209095 | 4_4:+49638244 | None:intergenic |
| CAAGTTTCATCACATAATTT+TGG | 0.254636 | 4_4:+49640349 | None:intergenic |
| GTGCAGAATTAAGGCCTTTA+GGG | 0.275774 | 4_4:+49638266 | None:intergenic |
| CATTCATTTGATGCTGCTAA+TGG | 0.284118 | 4_4:-49640397 | Msa0685500:CDS |
| GGTGCAGAATTAAGGCCTTT+AGG | 0.289156 | 4_4:+49638265 | None:intergenic |
| GTCTTCCTGGTGCAGAATTA+AGG | 0.291862 | 4_4:+49638257 | None:intergenic |
| CAAACTAGACAAACTAGATT+TGG | 0.295021 | 4_4:-49640806 | None:intergenic |
| AATTCACGTAGAGACTTTCT+TGG | 0.312447 | 4_4:-49640451 | Msa0685500:CDS |
| CTTTATTCTACCCGAGCTTT+TGG | 0.321623 | 4_4:-49637883 | Msa0685500:three_prime_UTR |
| ATGAGATATCAGGTGATAAA+AGG | 0.326010 | 4_4:-49638636 | Msa0685500:intron |
| AGTAGTATTTGATGTAAGTT+TGG | 0.332631 | 4_4:-49638212 | Msa0685500:CDS |
| TAGTCCACCAGTTGGATATC+AGG | 0.360762 | 4_4:-49639715 | Msa0685500:intron |
| AAGAAAGTCTCTACGTGAAT+TGG | 0.368565 | 4_4:+49640453 | None:intergenic |
| CATAATAATAAGCAGAGAAC+AGG | 0.368619 | 4_4:-49637839 | Msa0685500:three_prime_UTR |
| GACTTTCTTGGATTAGCATT+AGG | 0.374464 | 4_4:-49640439 | Msa0685500:CDS |
| CAATACAAGGATATTAAAGT+TGG | 0.375129 | 4_4:-49639747 | Msa0685500:CDS |
| TCAAATACTACTGGACTGTT+TGG | 0.387721 | 4_4:+49638223 | None:intergenic |
| CATCTGGACAAATATTTGAT+AGG | 0.389186 | 4_4:-49639170 | Msa0685500:intron |
| GTGATGGTGATAAATTGAAT+TGG | 0.399389 | 4_4:+49638114 | None:intergenic |
| TTCTCAACAGAAATGCTTTG+AGG | 0.406961 | 4_4:+49640547 | None:intergenic |
| CTCCTACTTTCATGCTCAAA+AGG | 0.417335 | 4_4:+49638601 | None:intergenic |
| TAAAGAGATCATATTCCTCT+TGG | 0.428915 | 4_4:+49637901 | None:intergenic |
| ATAGTATATCATGGATTCTC+TGG | 0.430893 | 4_4:-49637927 | Msa0685500:three_prime_UTR |
| AGATTCAGCTTCAATGTACT+TGG | 0.436583 | 4_4:+49638005 | None:intergenic |
| ATGATGTTATTGTTTGCAAA+TGG | 0.440480 | 4_4:+49640773 | None:intergenic |
| CCTATGGTAACTACTGAATC+AGG | 0.444760 | 4_4:-49639774 | Msa0685500:CDS |
| TATGTTGCAATGGTTCCATC+TGG | 0.446081 | 4_4:-49639186 | Msa0685500:CDS |
| TTTGATGCTGCTAATGGAGC+TGG | 0.447449 | 4_4:-49640391 | Msa0685500:CDS |
| ATGACACAATATTACATCCT+TGG | 0.447775 | 4_4:-49640744 | Msa0685500:five_prime_UTR |
| AAACTTACATCAAATACTAC+TGG | 0.453698 | 4_4:+49638214 | None:intergenic |
| TGATATCCAACTGGTGGACT+AGG | 0.460176 | 4_4:+49639717 | None:intergenic |
| GGACTGTTTGGAGCCACCCT+TGG | 0.463548 | 4_4:+49638235 | None:intergenic |
| TGATGGTGATAAATTGAATT+GGG | 0.468025 | 4_4:+49638115 | None:intergenic |
| TCTCTGCTTATTATTATGGT+TGG | 0.470296 | 4_4:+49637844 | None:intergenic |
| AGACAGAAGCTTACTGATCC+AGG | 0.482305 | 4_4:+49638558 | None:intergenic |
| CGTGGATGAGGAATAAACTT+AGG | 0.489097 | 4_4:-49638170 | Msa0685500:exon |
| TCGCAGTTGGCATTCCCTAA+AGG | 0.493586 | 4_4:-49638280 | Msa0685500:intron |
| TTACACACCTGATATCCAAC+TGG | 0.497134 | 4_4:+49639708 | None:intergenic |
| TCCTCATCCACGTCAAGTCC+TGG | 0.497402 | 4_4:+49638181 | None:intergenic |
| TTTATGCATGAAGGTACCTA+TGG | 0.499177 | 4_4:-49639790 | Msa0685500:intron |
| AATACAAGGATATTAAAGTT+GGG | 0.500943 | 4_4:-49639746 | Msa0685500:CDS |
| CATTAGCAGCATCAAATGAA+TGG | 0.505775 | 4_4:+49640398 | None:intergenic |
| CTGTCATCGATAGTATATCA+TGG | 0.512913 | 4_4:-49637936 | Msa0685500:three_prime_UTR |
| AAACGTCGGCTGTACATACC+TGG | 0.513530 | 4_4:-49638576 | Msa0685500:CDS |
| GTTATTGTTTGCAAATGGAA+TGG | 0.514203 | 4_4:+49640778 | None:intergenic |
| TGCGTTCAGTCAAGGTGGAA+TGG | 0.516263 | 4_4:+49638143 | None:intergenic |
| GAGAACAGGGAACATGTTAA+CGG | 0.518782 | 4_4:-49637825 | Msa0685500:three_prime_UTR |
| CACCATTTGACCAAAAGCTC+GGG | 0.520559 | 4_4:+49637873 | None:intergenic |
| CTATCAAATATTTGTCCAGA+TGG | 0.522457 | 4_4:+49639171 | None:intergenic |
| CCACCATTTGACCAAAAGCT+CGG | 0.529970 | 4_4:+49637872 | None:intergenic |
| TGAATCAGGTTTGCAATACA+AGG | 0.531477 | 4_4:-49639760 | Msa0685500:CDS |
| AGGACTTACAAAGTGGAAGC+AGG | 0.541635 | 4_4:+49640696 | None:intergenic |
| ATCCTTGGATATGCCTAGCA+TGG | 0.544626 | 4_4:-49640729 | Msa0685500:exon |
| GTGATAAAAGGACTTGATGA+AGG | 0.565095 | 4_4:-49638624 | Msa0685500:CDS |
| ACCAGGACTTGACGTGGATG+AGG | 0.572224 | 4_4:-49638182 | Msa0685500:CDS |
| TACAAAGTGGAAGCAGGAGA+GGG | 0.573806 | 4_4:+49640702 | None:intergenic |
| GGCTGCTAATTATGTTGCAA+TGG | 0.576500 | 4_4:-49639196 | Msa0685500:CDS |
| CATGATATACTATCGATGAC+AGG | 0.577750 | 4_4:+49637937 | None:intergenic |
| GGGTTGACTGCGTTCAGTCA+AGG | 0.578018 | 4_4:+49638135 | None:intergenic |
| GATATCCAACTGGTGGACTA+GGG | 0.580308 | 4_4:+49639718 | None:intergenic |
| AGGAGAGGGGAAGCCATGCT+AGG | 0.580475 | 4_4:+49640716 | None:intergenic |
| CTTTGAGGAGCAGTAAGAGA+AGG | 0.581278 | 4_4:+49640562 | None:intergenic |
| AAGTGAAGTCCACAGAGACA+AGG | 0.592596 | 4_4:-49640504 | Msa0685500:CDS |
| GTAAGTTTGGAATATGTACC+AGG | 0.597022 | 4_4:-49638199 | Msa0685500:CDS |
| AGTGCATTCCCTTGTCTCTG+TGG | 0.600039 | 4_4:+49640495 | None:intergenic |
| CAAGGCCCTAGTCCACCAGT+TGG | 0.601514 | 4_4:-49639723 | Msa0685500:CDS |
| AAAGGCCTTAATTCTGCACC+AGG | 0.603111 | 4_4:-49638262 | Msa0685500:CDS |
| CCTGATTCAGTAGTTACCAT+AGG | 0.608091 | 4_4:+49639774 | None:intergenic |
| CACACCTGATATCCAACTGG+TGG | 0.614939 | 4_4:+49639711 | None:intergenic |
| AAGGATATTAAAGTTGGGCA+AGG | 0.616109 | 4_4:-49639741 | Msa0685500:CDS |
| TTACAAAGTGGAAGCAGGAG+AGG | 0.616382 | 4_4:+49640701 | None:intergenic |
| AGTGAAGTCCACAGAGACAA+GGG | 0.625615 | 4_4:-49640503 | Msa0685500:CDS |
| ACAATTGTATAAGATAGTGA+TGG | 0.629046 | 4_4:+49638098 | None:intergenic |
| AGCCATGCTAGGCATATCCA+AGG | 0.638646 | 4_4:+49640727 | None:intergenic |
| TGCACCAGGAAGACCAAGGG+TGG | 0.644156 | 4_4:-49638248 | Msa0685500:CDS |
| ACAAAGTGGAAGCAGGAGAG+GGG | 0.648340 | 4_4:+49640703 | None:intergenic |
| TTCTGCACCAGGAAGACCAA+GGG | 0.663256 | 4_4:-49638251 | Msa0685500:CDS |
| ATAATAATAAGCAGAGAACA+GGG | 0.670910 | 4_4:-49637838 | Msa0685500:three_prime_UTR |
| TGAAAGTAGGAGGGAAACGT+CGG | 0.675740 | 4_4:-49638590 | Msa0685500:CDS |
| GGATGTAATATTGTGTCATG+TGG | 0.676551 | 4_4:+49640748 | None:intergenic |
| TGGATTCTCTGGTCTCCAAG+AGG | 0.680434 | 4_4:-49637916 | Msa0685500:three_prime_UTR |
| TTGACTGCGTTCAGTCAAGG+TGG | 0.698133 | 4_4:+49638138 | None:intergenic |
| ATTCTGCACCAGGAAGACCA+AGG | 0.707291 | 4_4:-49638252 | Msa0685500:CDS |
| ATATGTACCAGGACTTGACG+TGG | 0.731552 | 4_4:-49638188 | Msa0685500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTTATCTACTAAAATT+AGG | - | chr4_4:49638417-49638436 | Msa0685500:intron | 10.0% |
| !! | AATATATTAATCATTTGATA+AGG | + | chr4_4:49639273-49639292 | None:intergenic | 10.0% |
| !! | ATATTAACATAATAATCAAT+TGG | - | chr4_4:49639606-49639625 | Msa0685500:intron | 10.0% |
| !!! | TATTTTTCAAAAAACATTTA+AGG | + | chr4_4:49639902-49639921 | None:intergenic | 10.0% |
| !!! | TTTTAGTAGATAAATATTGA+AGG | + | chr4_4:49638415-49638434 | None:intergenic | 15.0% |
| !!! | ATATAAATTTAGAGTATCAT+AGG | + | chr4_4:49639072-49639091 | None:intergenic | 15.0% |
| !!! | TTTTATATAGATTCTACTTG+TGG | - | chr4_4:49638024-49638043 | Msa0685500:three_prime_UTR | 20.0% |
| !!! | TATGTGACTAAAAATGTTTT+CGG | - | chr4_4:49638464-49638483 | Msa0685500:intron | 20.0% |
| !!! | ATGTTTTCGGTTAAAAAAAT+TGG | - | chr4_4:49638477-49638496 | Msa0685500:intron | 20.0% |
| !!! | TGTTTTCGGTTAAAAAAATT+GGG | - | chr4_4:49638478-49638497 | Msa0685500:intron | 20.0% |
| !! | TCATTAACTATCGATATTAA+TGG | + | chr4_4:49638792-49638811 | None:intergenic | 20.0% |
| !! | AATACAAGGATATTAAAGTT+GGG | - | chr4_4:49638870-49638889 | Msa0685500:intron | 20.0% |
| !! | AAGATACAAATCAAGTATTT+AGG | + | chr4_4:49639021-49639040 | None:intergenic | 20.0% |
| !!! | AAATACTTGATTTGTATCTT+AGG | - | chr4_4:49639021-49639040 | Msa0685500:intron | 20.0% |
| !!! | TACTTGTTTCTTTCTAAATT+TGG | + | chr4_4:49639632-49639651 | None:intergenic | 20.0% |
| !!! | TATTGTAATTTGTAATGCTT+TGG | - | chr4_4:49639657-49639676 | Msa0685500:intron | 20.0% |
| !!! | TACAATTGTTAATTCTTTTG+AGG | - | chr4_4:49640532-49640551 | Msa0685500:CDS | 20.0% |
| ! | ATGATGTTATTGTTTGCAAA+TGG | + | chr4_4:49637846-49637865 | None:intergenic | 25.0% |
| ! | CAGTATTATTTATGCATTGT+TGG | + | chr4_4:49637970-49637989 | None:intergenic | 25.0% |
| !!! | CATAATTTTGGTTTTTCTTC+TGG | + | chr4_4:49638258-49638277 | None:intergenic | 25.0% |
| !! | CAAGTTTCATCACATAATTT+TGG | + | chr4_4:49638270-49638289 | None:intergenic | 25.0% |
| ! | ATTTGTGAAGAACCTTATAA+TGG | + | chr4_4:49638589-49638608 | None:intergenic | 25.0% |
| ! | CAATACAAGGATATTAAAGT+TGG | - | chr4_4:49638869-49638888 | Msa0685500:intron | 25.0% |
| ! | AGTAATCCTATATCATTATC+AGG | + | chr4_4:49639148-49639167 | None:intergenic | 25.0% |
| ! | GATTGACAGAAATTTGTAAT+CGG | + | chr4_4:49639478-49639497 | None:intergenic | 25.0% |
| !! | AGAAGTACACTATATTTACA+TGG | + | chr4_4:49640153-49640172 | None:intergenic | 25.0% |
| ! | CTGAAAGTTTATTTACAGAT+TGG | - | chr4_4:49640266-49640285 | Msa0685500:intron | 25.0% |
| ! | TAAGTACTTAATTCTAACGT+TGG | - | chr4_4:49640289-49640308 | Msa0685500:intron | 25.0% |
| ! | AAACTTACATCAAATACTAC+TGG | + | chr4_4:49640405-49640424 | None:intergenic | 25.0% |
| ! | AGTAGTATTTGATGTAAGTT+TGG | - | chr4_4:49640404-49640423 | Msa0685500:CDS | 25.0% |
| !! | TGATGGTGATAAATTGAATT+GGG | + | chr4_4:49640504-49640523 | None:intergenic | 25.0% |
| ! | ACAATTGTATAAGATAGTGA+TGG | + | chr4_4:49640521-49640540 | None:intergenic | 25.0% |
| ! | TTCAATTTCCATACCTAAAA+TGG | - | chr4_4:49640649-49640668 | Msa0685500:intron | 25.0% |
| !!! | GTTTAATACCATTTTAGGTA+TGG | + | chr4_4:49640660-49640679 | None:intergenic | 25.0% |
| ! | ATAATAATAAGCAGAGAACA+GGG | - | chr4_4:49640778-49640797 | Msa0685500:five_prime_UTR | 25.0% |
| GTTATTGTTTGCAAATGGAA+TGG | + | chr4_4:49637841-49637860 | None:intergenic | 30.0% | |
| ATGACACAATATTACATCCT+TGG | - | chr4_4:49637872-49637891 | Msa0685500:three_prime_UTR | 30.0% | |
| !!! | AATTTTGGTTTTTCTTCTGG+TGG | + | chr4_4:49638255-49638274 | None:intergenic | 30.0% |
| AGAAAGAGCTTGAAAATGTA+TGG | - | chr4_4:49638292-49638311 | Msa0685500:intron | 30.0% | |
| GTAGACATTAATCACAGTTA+AGG | + | chr4_4:49638344-49638363 | None:intergenic | 30.0% | |
| AAAACTTGCAATGAAATGAC+AGG | + | chr4_4:49638654-49638673 | None:intergenic | 30.0% | |
| ! | ACTGAGTATTTTATGCATGA+AGG | - | chr4_4:49638817-49638836 | Msa0685500:intron | 30.0% |
| !! | CATTGACTGCATTTTTGAAA+TGG | + | chr4_4:49638976-49638995 | None:intergenic | 30.0% |
| ! | TTCAGTATTTTCTACGTAGA+AGG | + | chr4_4:49639104-49639123 | None:intergenic | 30.0% |
| ! | GGTACTGAAATCATCAATAT+TGG | + | chr4_4:49639127-49639146 | None:intergenic | 30.0% |
| ! | TCAGTACCTGATAATGATAT+AGG | - | chr4_4:49639139-49639158 | Msa0685500:intron | 30.0% |
| ! | CTTTAGCTAGTTTAGATTGA+AGG | + | chr4_4:49639240-49639259 | None:intergenic | 30.0% |
| ! | TTTTCATGTGCTTATCTGAT+AGG | - | chr4_4:49639396-49639415 | Msa0685500:intron | 30.0% |
| CTATCAAATATTTGTCCAGA+TGG | + | chr4_4:49639448-49639467 | None:intergenic | 30.0% | |
| CATCTGGACAAATATTTGAT+AGG | - | chr4_4:49639446-49639465 | Msa0685500:intron | 30.0% | |
| AATCATGCCTAATAAGATGT+TGG | - | chr4_4:49639577-49639596 | Msa0685500:intron | 30.0% | |
| AACTGAAAAAGGAATGATCA+AGG | + | chr4_4:49639691-49639710 | None:intergenic | 30.0% | |
| AGATGACAGAAAACTGAAAA+AGG | + | chr4_4:49639702-49639721 | None:intergenic | 30.0% | |
| ! | TTTCTGTCATCTTTCGATTT+TGG | - | chr4_4:49639710-49639729 | Msa0685500:intron | 30.0% |
| !!! | TTTTTGAAGCTGTTGTCTTT+GGG | - | chr4_4:49639733-49639752 | Msa0685500:CDS | 30.0% |
| ATAACTGAGCATTCTAATGA+AGG | + | chr4_4:49639760-49639779 | None:intergenic | 30.0% | |
| ATGAGCTGTAAAATTGGAAA+GGG | + | chr4_4:49639830-49639849 | None:intergenic | 30.0% | |
| AATGAGCTGTAAAATTGGAA+AGG | + | chr4_4:49639831-49639850 | None:intergenic | 30.0% | |
| ! | TTTCCAATTTTACAGCTCAT+TGG | - | chr4_4:49639830-49639849 | Msa0685500:intron | 30.0% |
| TGAAAGGATTATCAAACACT+AGG | + | chr4_4:49639937-49639956 | None:intergenic | 30.0% | |
| TAATCCTTTCAAAGACTAAC+TGG | - | chr4_4:49639946-49639965 | Msa0685500:intron | 30.0% | |
| !! | AATACCAGTTAGTCTTTGAA+AGG | + | chr4_4:49639953-49639972 | None:intergenic | 30.0% |
| TTTATCACCTGATATCTCAT+CGG | + | chr4_4:49639980-49639999 | None:intergenic | 30.0% | |
| ATGAGATATCAGGTGATAAA+AGG | - | chr4_4:49639980-49639999 | Msa0685500:intron | 30.0% | |
| !! | GTCAATGCACATTTTAAGTA+TGG | + | chr4_4:49640199-49640218 | None:intergenic | 30.0% |
| ! | AATGTGCATTGACAACATAA+TGG | - | chr4_4:49640206-49640225 | Msa0685500:intron | 30.0% |
| TGACAACATAATGGTGTAAA+AGG | - | chr4_4:49640215-49640234 | Msa0685500:intron | 30.0% | |
| ! | GTGATGGTGATAAATTGAAT+TGG | + | chr4_4:49640505-49640524 | None:intergenic | 30.0% |
| ! | GACAGGTTTAATACCATTTT+AGG | + | chr4_4:49640665-49640684 | None:intergenic | 30.0% |
| ATAGTATATCATGGATTCTC+TGG | - | chr4_4:49640689-49640708 | Msa0685500:intron | 30.0% | |
| TAAAGAGATCATATTCCTCT+TGG | + | chr4_4:49640718-49640737 | None:intergenic | 30.0% | |
| TCTCTGCTTATTATTATGGT+TGG | + | chr4_4:49640775-49640794 | None:intergenic | 30.0% | |
| CTGTTCTCTGCTTATTATTA+TGG | + | chr4_4:49640779-49640798 | None:intergenic | 30.0% | |
| CATAATAATAAGCAGAGAAC+AGG | - | chr4_4:49640777-49640796 | Msa0685500:five_prime_UTR | 30.0% | |
| GGATGTAATATTGTGTCATG+TGG | + | chr4_4:49637871-49637890 | None:intergenic | 35.0% | |
| AAGTGAAAGGACTTACAAAG+TGG | + | chr4_4:49637930-49637949 | None:intergenic | 35.0% | |
| TGAGGAAAAGAGAAAGTGAA+AGG | + | chr4_4:49637943-49637962 | None:intergenic | 35.0% | |
| TTATGCATTGTTGGATAGTG+AGG | + | chr4_4:49637961-49637980 | None:intergenic | 35.0% | |
| TTCTCAACAGAAATGCTTTG+AGG | + | chr4_4:49638072-49638091 | None:intergenic | 35.0% | |
| AAGAAAGTCTCTACGTGAAT+TGG | + | chr4_4:49638166-49638185 | None:intergenic | 35.0% | |
| AATTCACGTAGAGACTTTCT+TGG | - | chr4_4:49638165-49638184 | Msa0685500:exon | 35.0% | |
| !! | GACTTTCTTGGATTAGCATT+AGG | - | chr4_4:49638177-49638196 | Msa0685500:CDS | 35.0% |
| CATTAGCAGCATCAAATGAA+TGG | + | chr4_4:49638221-49638240 | None:intergenic | 35.0% | |
| CATTCATTTGATGCTGCTAA+TGG | - | chr4_4:49638219-49638238 | Msa0685500:CDS | 35.0% | |
| TCACAGTTAAGGCATAGAAA+GGG | + | chr4_4:49638333-49638352 | None:intergenic | 35.0% | |
| ATCACAGTTAAGGCATAGAA+AGG | + | chr4_4:49638334-49638353 | None:intergenic | 35.0% | |
| CTCTTAAAACGTTTGACGAA+AGG | - | chr4_4:49638559-49638578 | Msa0685500:intron | 35.0% | |
| ACGAAAGGACTTCCATTATA+AGG | - | chr4_4:49638574-49638593 | Msa0685500:CDS | 35.0% | |
| !! | TTTATGCATGAAGGTACCTA+TGG | - | chr4_4:49638826-49638845 | Msa0685500:intron | 35.0% |
| TGAATCAGGTTTGCAATACA+AGG | - | chr4_4:49638856-49638875 | Msa0685500:intron | 35.0% | |
| AAGGATATTAAAGTTGGGCA+AGG | - | chr4_4:49638875-49638894 | Msa0685500:intron | 35.0% | |
| !!! | TGACTGCATTTTTGAAATGG+TGG | + | chr4_4:49638973-49638992 | None:intergenic | 35.0% |
| GCATCAATCTCGTTCAAAAT+TGG | + | chr4_4:49638999-49639018 | None:intergenic | 35.0% | |
| AGTTTAGATTGAAGGAAGCA+AGG | + | chr4_4:49639232-49639251 | None:intergenic | 35.0% | |
| TGACAGAAATTTGTAATCGG+CGG | + | chr4_4:49639475-49639494 | None:intergenic | 35.0% | |
| ATACAACAGCAAACATCACT+TGG | + | chr4_4:49639528-49639547 | None:intergenic | 35.0% | |
| TCACACTCCAACATCTTATT+AGG | + | chr4_4:49639587-49639606 | None:intergenic | 35.0% | |
| !!! | GTTTTTGAAGCTGTTGTCTT+TGG | - | chr4_4:49639732-49639751 | Msa0685500:CDS | 35.0% |
| TGTATGCACTGTAATGAGAA+TGG | - | chr4_4:49639781-49639800 | Msa0685500:intron | 35.0% | |
| TCTCCAATGAGCTGTAAAAT+TGG | + | chr4_4:49639836-49639855 | None:intergenic | 35.0% | |
| ! | TTTTACAGCTCATTGGAGAA+AGG | - | chr4_4:49639837-49639856 | Msa0685500:intron | 35.0% |
| TTATCACCTGATATCTCATC+GGG | + | chr4_4:49639979-49639998 | None:intergenic | 35.0% | |
| GTGATAAAAGGACTTGATGA+AGG | - | chr4_4:49639992-49640011 | Msa0685500:intron | 35.0% | |
| ! | TTTTGAGCATGAAAGTAGGA+GGG | - | chr4_4:49640017-49640036 | Msa0685500:intron | 35.0% |
| !! | GTTTTGAATCTTGCAATGCT+GGG | + | chr4_4:49640105-49640124 | None:intergenic | 35.0% |
| !! | TGTTTTGAATCTTGCAATGC+TGG | + | chr4_4:49640106-49640125 | None:intergenic | 35.0% |
| !! | GTGTACTTCTAGTTTCTCAA+TGG | - | chr4_4:49640163-49640182 | Msa0685500:intron | 35.0% |
| !! | TTCTTTTCTTGTTTCGCAGT+TGG | - | chr4_4:49640323-49640342 | Msa0685500:intron | 35.0% |
| TCAAATACTACTGGACTGTT+TGG | + | chr4_4:49640396-49640415 | None:intergenic | 35.0% | |
| ! | GTAAGTTTGGAATATGTACC+AGG | - | chr4_4:49640417-49640436 | Msa0685500:CDS | 35.0% |
| AGATTCAGCTTCAATGTACT+TGG | + | chr4_4:49640614-49640633 | None:intergenic | 35.0% | |
| CATGATATACTATCGATGAC+AGG | + | chr4_4:49640682-49640701 | None:intergenic | 35.0% | |
| CTGTCATCGATAGTATATCA+TGG | - | chr4_4:49640680-49640699 | Msa0685500:intron | 35.0% | |
| ! | AGCTTCTGTCAGGGAATTTT+TGG | + | chr4_4:49638684-49638703 | None:intergenic | 40.0% |
| ACTGAACAAAGCTTCTGTCA+GGG | + | chr4_4:49638693-49638712 | None:intergenic | 40.0% | |
| CCTGATTCAGTAGTTACCAT+AGG | + | chr4_4:49638845-49638864 | None:intergenic | 40.0% | |
| CCTATGGTAACTACTGAATC+AGG | - | chr4_4:49638842-49638861 | Msa0685500:intron | 40.0% | |
| TTACACACCTGATATCCAAC+TGG | + | chr4_4:49638911-49638930 | None:intergenic | 40.0% | |
| TAGATTGAAGGAAGCAAGGA+CGG | + | chr4_4:49639228-49639247 | None:intergenic | 40.0% | |
| AACAATACACATGCTGACAG+AGG | + | chr4_4:49639352-49639371 | None:intergenic | 40.0% | |
| TCATGTGCTTATCTGATAGG+TGG | - | chr4_4:49639399-49639418 | Msa0685500:intron | 40.0% | |
| GGCTGCTAATTATGTTGCAA+TGG | - | chr4_4:49639420-49639439 | Msa0685500:intron | 40.0% | |
| TATGTTGCAATGGTTCCATC+TGG | - | chr4_4:49639430-49639449 | Msa0685500:intron | 40.0% | |
| CAACGCGAAAAATGTAAAGC+TGG | + | chr4_4:49639863-49639882 | None:intergenic | 40.0% | |
| ! | CAGCTTTACATTTTTCGCGT+TGG | - | chr4_4:49639861-49639880 | Msa0685500:intron | 40.0% |
| ! | TACATTTTTCGCGTTGGATC+TGG | - | chr4_4:49639867-49639886 | Msa0685500:intron | 40.0% |
| ATTCAACCCGATGAGATATC+AGG | - | chr4_4:49639970-49639989 | Msa0685500:intron | 40.0% | |
| CTCCTACTTTCATGCTCAAA+AGG | + | chr4_4:49640018-49640037 | None:intergenic | 40.0% | |
| ! | CTTTTGAGCATGAAAGTAGG+AGG | - | chr4_4:49640016-49640035 | Msa0685500:intron | 40.0% |
| GTGCAGAATTAAGGCCTTTA+GGG | + | chr4_4:49640353-49640372 | None:intergenic | 40.0% | |
| CGTGGATGAGGAATAAACTT+AGG | - | chr4_4:49640446-49640465 | Msa0685500:CDS | 40.0% | |
| ! | CTTTATTCTACCCGAGCTTT+TGG | - | chr4_4:49640733-49640752 | Msa0685500:exon | 40.0% |
| GAGAACAGGGAACATGTTAA+CGG | - | chr4_4:49640791-49640810 | Msa0685500:five_prime_UTR | 40.0% | |
| ATCCTTGGATATGCCTAGCA+TGG | - | chr4_4:49637887-49637906 | Msa0685500:three_prime_UTR | 45.0% | |
| TACAAAGTGGAAGCAGGAGA+GGG | + | chr4_4:49637917-49637936 | None:intergenic | 45.0% | |
| TTACAAAGTGGAAGCAGGAG+AGG | + | chr4_4:49637918-49637937 | None:intergenic | 45.0% | |
| AGGACTTACAAAGTGGAAGC+AGG | + | chr4_4:49637923-49637942 | None:intergenic | 45.0% | |
| ! | CTTTGAGGAGCAGTAAGAGA+AGG | + | chr4_4:49638057-49638076 | None:intergenic | 45.0% |
| AAGTGAAGTCCACAGAGACA+AGG | - | chr4_4:49638112-49638131 | Msa0685500:three_prime_UTR | 45.0% | |
| AGTGAAGTCCACAGAGACAA+GGG | - | chr4_4:49638113-49638132 | Msa0685500:three_prime_UTR | 45.0% | |
| TTTGATGCTGCTAATGGAGC+TGG | - | chr4_4:49638225-49638244 | Msa0685500:CDS | 45.0% | |
| TTGAAGGTGACACAACTGCA+TGG | + | chr4_4:49638399-49638418 | None:intergenic | 45.0% | |
| CACTGAACAAAGCTTCTGTC+AGG | + | chr4_4:49638694-49638713 | None:intergenic | 45.0% | |
| !! | CTGACAGAAGCTTTGTTCAG+TGG | - | chr4_4:49638692-49638711 | Msa0685500:intron | 45.0% |
| !! | GATATCCAACTGGTGGACTA+GGG | + | chr4_4:49638901-49638920 | None:intergenic | 45.0% |
| !! | TGATATCCAACTGGTGGACT+AGG | + | chr4_4:49638902-49638921 | None:intergenic | 45.0% |
| TAGTCCACCAGTTGGATATC+AGG | - | chr4_4:49638901-49638920 | Msa0685500:intron | 45.0% | |
| AGATTGAAGGAAGCAAGGAC+GGG | + | chr4_4:49639227-49639246 | None:intergenic | 45.0% | |
| ! | GGCCTTTTGAGCATGAAAGT+AGG | - | chr4_4:49640013-49640032 | Msa0685500:intron | 45.0% |
| TGAAAGTAGGAGGGAAACGT+CGG | - | chr4_4:49640026-49640045 | Msa0685500:intron | 45.0% | |
| AGACAGAAGCTTACTGATCC+AGG | + | chr4_4:49640061-49640080 | None:intergenic | 45.0% | |
| GGTGCAGAATTAAGGCCTTT+AGG | + | chr4_4:49640354-49640373 | None:intergenic | 45.0% | |
| AAAGGCCTTAATTCTGCACC+AGG | - | chr4_4:49640354-49640373 | Msa0685500:CDS | 45.0% | |
| GTCTTCCTGGTGCAGAATTA+AGG | + | chr4_4:49640362-49640381 | None:intergenic | 45.0% | |
| ATATGTACCAGGACTTGACG+TGG | - | chr4_4:49640428-49640447 | Msa0685500:CDS | 45.0% | |
| ! | TACCCGAGCTTTTGGTCAAA+TGG | - | chr4_4:49640741-49640760 | Msa0685500:exon | 45.0% |
| CACCATTTGACCAAAAGCTC+GGG | + | chr4_4:49640746-49640765 | None:intergenic | 45.0% | |
| CCACCATTTGACCAAAAGCT+CGG | + | chr4_4:49640747-49640766 | None:intergenic | 45.0% | |
| AGCCATGCTAGGCATATCCA+AGG | + | chr4_4:49637892-49637911 | None:intergenic | 50.0% | |
| ACAAAGTGGAAGCAGGAGAG+GGG | + | chr4_4:49637916-49637935 | None:intergenic | 50.0% | |
| AGTGCATTCCCTTGTCTCTG+TGG | + | chr4_4:49638124-49638143 | None:intergenic | 50.0% | |
| CACACCTGATATCCAACTGG+TGG | + | chr4_4:49638908-49638927 | None:intergenic | 50.0% | |
| GCGTTCAAGGGAAACTGAAC+AGG | + | chr4_4:49638944-49638963 | None:intergenic | 50.0% | |
| GGAAAGGGTCATACTCACAC+AGG | + | chr4_4:49639815-49639834 | None:intergenic | 50.0% | |
| ! | TTTTCGCGTTGGATCTGGTC+AGG | - | chr4_4:49639872-49639891 | Msa0685500:intron | 50.0% |
| ! | AAACGTCGGCTGTACATACC+TGG | - | chr4_4:49640040-49640059 | Msa0685500:intron | 50.0% |
| TCGCAGTTGGCATTCCCTAA+AGG | - | chr4_4:49640336-49640355 | Msa0685500:CDS | 50.0% | |
| ATTCTGCACCAGGAAGACCA+AGG | - | chr4_4:49640364-49640383 | Msa0685500:CDS | 50.0% | |
| TTCTGCACCAGGAAGACCAA+GGG | - | chr4_4:49640365-49640384 | Msa0685500:CDS | 50.0% | |
| TGCGTTCAGTCAAGGTGGAA+TGG | + | chr4_4:49640476-49640495 | None:intergenic | 50.0% | |
| TTGACTGCGTTCAGTCAAGG+TGG | + | chr4_4:49640481-49640500 | None:intergenic | 50.0% | |
| TGGATTCTCTGGTCTCCAAG+AGG | - | chr4_4:49640700-49640719 | Msa0685500:intron | 50.0% | |
| ! | CCGAGCTTTTGGTCAAATGG+TGG | - | chr4_4:49640744-49640763 | Msa0685500:five_prime_UTR | 50.0% |
| TGGTGGAGACGAGCGTTCAA+GGG | + | chr4_4:49638956-49638975 | None:intergenic | 55.0% | |
| ! | ATGGTGGAGACGAGCGTTCA+AGG | + | chr4_4:49638957-49638976 | None:intergenic | 55.0% |
| ACCAGGACTTGACGTGGATG+AGG | - | chr4_4:49640434-49640453 | Msa0685500:CDS | 55.0% | |
| TCCTCATCCACGTCAAGTCC+TGG | + | chr4_4:49640438-49640457 | None:intergenic | 55.0% | |
| GGGTTGACTGCGTTCAGTCA+AGG | + | chr4_4:49640484-49640503 | None:intergenic | 55.0% | |
| AGGAGAGGGGAAGCCATGCT+AGG | + | chr4_4:49637903-49637922 | None:intergenic | 60.0% | |
| CAAGGCCCTAGTCCACCAGT+TGG | - | chr4_4:49638893-49638912 | Msa0685500:intron | 60.0% | |
| TGCACCAGGAAGACCAAGGG+TGG | - | chr4_4:49640368-49640387 | Msa0685500:CDS | 60.0% | |
| ! | GGACTGTTTGGAGCCACCCT+TGG | + | chr4_4:49640384-49640403 | None:intergenic | 60.0% |
| ! | GGAGCCACCCTTGGTCTTCC+TGG | + | chr4_4:49640375-49640394 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 49637817 | 49640821 | 49637817 | ID=Msa0685500;Name=Msa0685500 |
| chr4_4 | mRNA | 49637817 | 49640821 | 49637817 | ID=Msa0685500-mRNA-1;Parent=Msa0685500;Name=Msa0685500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=80|1|1|1|1|1|7|360|229 |
| chr4_4 | exon | 49637817 | 49638296 | 49637817 | ID=Msa0685500-mRNA-1:exon:12547;Parent=Msa0685500-mRNA-1 |
| chr4_4 | exon | 49638572 | 49638646 | 49638572 | ID=Msa0685500-mRNA-1:exon:12546;Parent=Msa0685500-mRNA-1 |
| chr4_4 | exon | 49638745 | 49638793 | 49638745 | ID=Msa0685500-mRNA-1:exon:12545;Parent=Msa0685500-mRNA-1 |
| chr4_4 | exon | 49639171 | 49639220 | 49639171 | ID=Msa0685500-mRNA-1:exon:12544;Parent=Msa0685500-mRNA-1 |
| chr4_4 | exon | 49639716 | 49639799 | 49639716 | ID=Msa0685500-mRNA-1:exon:12543;Parent=Msa0685500-mRNA-1 |
| chr4_4 | exon | 49640330 | 49640604 | 49640330 | ID=Msa0685500-mRNA-1:exon:12542;Parent=Msa0685500-mRNA-1 |
| chr4_4 | exon | 49640705 | 49640821 | 49640705 | ID=Msa0685500-mRNA-1:exon:12541;Parent=Msa0685500-mRNA-1 |
| chr4_4 | five_prime_UTR | 49640742 | 49640821 | 49640742 | ID=Msa0685500-mRNA-1:five_prime_utr;Parent=Msa0685500-mRNA-1 |
| chr4_4 | CDS | 49640705 | 49640741 | 49640705 | ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1 |
| chr4_4 | CDS | 49640330 | 49640604 | 49640330 | ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1 |
| chr4_4 | CDS | 49639716 | 49639799 | 49639716 | ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1 |
| chr4_4 | CDS | 49639171 | 49639220 | 49639171 | ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1 |
| chr4_4 | CDS | 49638745 | 49638793 | 49638745 | ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1 |
| chr4_4 | CDS | 49638572 | 49638646 | 49638572 | ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1 |
| chr4_4 | CDS | 49638177 | 49638296 | 49638177 | ID=Msa0685500-mRNA-1:cds;Parent=Msa0685500-mRNA-1 |
| chr4_4 | three_prime_UTR | 49637817 | 49638176 | 49637817 | ID=Msa0685500-mRNA-1:three_prime_utr;Parent=Msa0685500-mRNA-1 |
| Gene Sequence |
| Protein sequence |