Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167500 | sp|P42620|YQJG_ECOLI | 44.484 | 281 | 141 | 5 | 119 | 396 | 56 | 324 | 3.62e-70 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167500 | A0A396JZN6 | 94.161 | 411 | 21 | 1 | 1 | 408 | 1 | 411 | 0.0 | 762 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027250 | Msa0167500 | 0.939601 | 9.654288e-100 | -8.615850e-47 |
| Msa0075160 | Msa0167500 | 0.923362 | 2.933753e-89 | -8.615850e-47 |
| Msa0093950 | Msa0167500 | 0.817105 | 3.919116e-52 | -8.615850e-47 |
| Msa0123000 | Msa0167500 | 0.923676 | 1.940636e-89 | -8.615850e-47 |
| Msa0126000 | Msa0167500 | 0.841527 | 4.501114e-58 | -8.615850e-47 |
| Msa0132630 | Msa0167500 | 0.803610 | 3.210581e-49 | -8.615850e-47 |
| Msa0167500 | Msa0168310 | -0.836972 | 6.841408e-57 | -8.615850e-47 |
| Msa0167500 | Msa0168410 | 0.885317 | 9.027748e-72 | -8.615850e-47 |
| Msa0167500 | Msa0220400 | 0.836488 | 9.089209e-57 | -8.615850e-47 |
| Msa0167500 | Msa0235970 | 0.824562 | 7.544938e-54 | -8.615850e-47 |
| Msa0167500 | Msa0299530 | 0.836221 | 1.062493e-56 | -8.615850e-47 |
| Msa0167500 | Msa0349340 | -0.802215 | 6.235385e-49 | -8.615850e-47 |
| Msa0167500 | Msa0386280 | 0.806992 | 6.281505e-50 | -8.615850e-47 |
| Msa0167500 | Msa0389920 | -0.801389 | 9.215421e-49 | -8.615850e-47 |
| Msa0167500 | Msa0530560 | -0.802715 | 4.919535e-49 | -8.615850e-47 |
| Msa0167500 | Msa0542060 | 0.898352 | 5.774403e-77 | -8.615850e-47 |
| Msa0167500 | Msa0559650 | 0.814621 | 1.403581e-51 | -8.615850e-47 |
| Msa0167500 | Msa0645800 | 0.895886 | 6.253073e-76 | -8.615850e-47 |
| Msa0167500 | Msa0654410 | 0.842318 | 2.781946e-58 | -8.615850e-47 |
| Msa0167500 | Msa0685110 | 0.898419 | 5.405354e-77 | -8.615850e-47 |
| Msa0167500 | Msa0685500 | 0.896960 | 2.232314e-76 | -8.615850e-47 |
| Msa0167500 | Msa0719900 | 0.820098 | 8.208500e-53 | -8.615850e-47 |
| Msa0167500 | Msa0804690 | 0.805754 | 1.145662e-49 | -8.615850e-47 |
| Msa0167500 | Msa0822320 | 0.802057 | 6.721414e-49 | -8.615850e-47 |
| Msa0167500 | Msa0922100 | 0.878751 | 2.179860e-69 | -8.615850e-47 |
| Msa0167500 | Msa0960880 | 0.830516 | 2.811129e-55 | -8.615850e-47 |
| Msa0167500 | Msa0994250 | 0.873466 | 1.438899e-67 | -8.615850e-47 |
| Msa0167500 | Msa1163190 | 0.848463 | 6.030832e-60 | -8.615850e-47 |
| Msa0167500 | Msa1173800 | -0.842805 | 2.065902e-58 | -8.615850e-47 |
| Msa0167500 | Msa1238310 | -0.809875 | 1.524308e-50 | -8.615850e-47 |
| Msa0167500 | Msa1322720 | -0.800319 | 1.524013e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167500 | MtrunA17_Chr1g0183331 | 94.161 | 411 | 21 | 1 | 1 | 408 | 1 | 411 | 0.0 | 762 |
| Msa0167500 | MtrunA17_Chr4g0043651 | 41.265 | 332 | 172 | 5 | 86 | 400 | 30 | 355 | 3.82e-78 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0167500 | AT5G44000.1 | 67.614 | 352 | 104 | 3 | 61 | 403 | 44 | 394 | 8.46e-177 | 499 |
| Msa0167500 | AT4G19880.1 | 40.058 | 342 | 182 | 5 | 75 | 399 | 20 | 355 | 2.33e-74 | 236 |
| Msa0167500 | AT5G45020.1 | 39.039 | 333 | 176 | 6 | 87 | 400 | 1 | 325 | 2.77e-71 | 227 |
| Msa0167500 | AT5G45020.2 | 39.039 | 333 | 176 | 6 | 87 | 400 | 1 | 325 | 2.77e-71 | 227 |
| Msa0167500 | AT5G44990.2 | 39.432 | 317 | 169 | 6 | 100 | 399 | 11 | 321 | 3.58e-69 | 223 |
| Msa0167500 | AT5G44990.1 | 39.432 | 317 | 169 | 6 | 100 | 399 | 11 | 321 | 3.58e-69 | 223 |
| Msa0167500 | AT4G19880.2 | 37.228 | 368 | 182 | 6 | 75 | 399 | 20 | 381 | 1.07e-68 | 222 |
| Msa0167500 | AT5G44990.3 | 43.231 | 229 | 126 | 1 | 175 | 403 | 18 | 242 | 9.87e-60 | 195 |
| Msa0167500 | AT4G19880.3 | 40.613 | 261 | 136 | 4 | 75 | 318 | 20 | 278 | 1.16e-55 | 186 |
| Msa0167500 | AT5G44990.4 | 41.102 | 236 | 120 | 5 | 100 | 318 | 11 | 244 | 2.19e-52 | 176 |
Find 159 sgRNAs with CRISPR-Local
Find 372 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTAATTCCGGGTTAAA+TGG | 0.145587 | 1_4:+49402038 | Msa0167500:CDS |
| CCGCTTTATCATATGCTTCT+TGG | 0.182145 | 1_4:-49402468 | None:intergenic |
| TGAACCAGTATTTGTTAAAT+AGG | 0.222094 | 1_4:+49402956 | Msa0167500:CDS |
| ATATGCAATTCAACGTTTAT+AGG | 0.235779 | 1_4:+49403030 | Msa0167500:three_prime_UTR |
| ATAATTCAATTGTTTAATTC+CGG | 0.258778 | 1_4:+49402029 | Msa0167500:CDS |
| CTCATTACATACAACATCTT+TGG | 0.263092 | 1_4:-49401997 | None:intergenic |
| ATTACAAGTATCTGCAACTT+TGG | 0.276080 | 1_4:-49402796 | None:intergenic |
| TACACACCATTGTTCACATT+TGG | 0.307861 | 1_4:-49402140 | None:intergenic |
| TGGACCGGAGAATCGGAATT+TGG | 0.312564 | 1_4:-49401691 | None:intergenic |
| ATGTGAAGATATCGAATATT+TGG | 0.318273 | 1_4:-49401354 | None:intergenic |
| ATTGCCTATTTAACAAATAC+TGG | 0.329847 | 1_4:-49402960 | None:intergenic |
| CACACTTTCAATTTCATCTC+TGG | 0.329934 | 1_4:+49403149 | Msa0167500:three_prime_UTR |
| TAATTCAATTGTTTAATTCC+GGG | 0.335485 | 1_4:+49402030 | Msa0167500:CDS |
| GAGCTGCCACGTGGAGTTCC+AGG | 0.336140 | 1_4:-49401613 | None:intergenic |
| GTTCTGTTACAAAACTTCTC+TGG | 0.344517 | 1_4:+49401544 | Msa0167500:CDS |
| TCTGAAGTTGAAGGCATAAT+TGG | 0.346959 | 1_4:-49402882 | None:intergenic |
| GACAAGGTGGTGTGAGGAAG+AGG | 0.351548 | 1_4:-49401409 | None:intergenic |
| TCGGGCAATTAGTCCGAGTT+TGG | 0.357269 | 1_4:+49401875 | Msa0167500:CDS |
| CTGGGGCCGGTCCCTTCCAC+CGG | 0.357469 | 1_4:+49401563 | Msa0167500:CDS |
| TCGGAATTTGGAAGCGGGTC+TGG | 0.361164 | 1_4:-49401679 | None:intergenic |
| ATACTCATACAACTTCTTCT+TGG | 0.361565 | 1_4:-49402641 | None:intergenic |
| AAGATCCAAGTCCGGGTTAC+GGG | 0.373599 | 1_4:-49402066 | None:intergenic |
| CGCCGGGAATGGACGGGTCG+TGG | 0.375710 | 1_4:+49401826 | Msa0167500:CDS |
| TCCCTGGATTGAGAGGAAAA+AGG | 0.376331 | 1_4:-49402851 | None:intergenic |
| TTCAAACGAGTTGGCGATAC+GGG | 0.393026 | 1_4:+49401852 | Msa0167500:CDS |
| TTACAAGTATCTGCAACTTT+GGG | 0.397228 | 1_4:-49402795 | None:intergenic |
| GGTGGGCCCACGGGCATGGC+AGG | 0.401801 | 1_4:-49401743 | None:intergenic |
| GTCTGTTTACTACTTTGATT+CGG | 0.402179 | 1_4:+49402584 | Msa0167500:CDS |
| GGAATATCCGCCGGTGGGGT+CGG | 0.408123 | 1_4:-49401658 | None:intergenic |
| ATCATTTGATTTGAGCTGGC+TGG | 0.408327 | 1_4:-49403181 | None:intergenic |
| TTCTGTTACAAAACTTCTCT+GGG | 0.408913 | 1_4:+49401545 | Msa0167500:CDS |
| GTTTGCCCGTAACCCGGACT+TGG | 0.409076 | 1_4:+49402061 | Msa0167500:CDS |
| TTCTTTGCATGCCTCATGGC+AGG | 0.410450 | 1_4:+49402913 | Msa0167500:CDS |
| TCCCACGACCCGTCCATTCC+CGG | 0.410480 | 1_4:-49401828 | None:intergenic |
| CGACAACCACTTTCCGCAAC+CGG | 0.426378 | 1_4:+49401442 | Msa0167500:CDS |
| CTACAGGCGTGACATTTATC+AGG | 0.426758 | 1_4:+49402678 | Msa0167500:CDS |
| ACCGGTGTCAGTGGCATCGC+CGG | 0.428200 | 1_4:+49401809 | Msa0167500:CDS |
| AGACTTTGAAGGAAGTATAT+AGG | 0.430167 | 1_4:+49401916 | Msa0167500:CDS |
| ATTTCATGCTCTGAAGTTGA+AGG | 0.430518 | 1_4:-49402891 | None:intergenic |
| AATTAGTCCGAGTTTGGATA+AGG | 0.434261 | 1_4:+49401881 | Msa0167500:CDS |
| GTCAGTGGCATCGCCGGGAA+TGG | 0.437517 | 1_4:+49401815 | Msa0167500:CDS |
| TGTTTAATTCCGGGTTAAAT+GGG | 0.438213 | 1_4:+49402039 | Msa0167500:CDS |
| CTGGTTCAGTTGATGATGAT+AGG | 0.444961 | 1_4:-49402941 | None:intergenic |
| AGAACGGATGAGGGAACTTC+CGG | 0.445710 | 1_4:-49401472 | None:intergenic |
| TCTTTCACCACCTGAGTTGA+AGG | 0.450035 | 1_4:+49402085 | Msa0167500:CDS |
| TGAACAAATCTTTCATCCGT+TGG | 0.450998 | 1_4:+49402982 | Msa0167500:three_prime_UTR |
| TATCCGCCGGTGGGGTCGGA+GGG | 0.453806 | 1_4:-49401654 | None:intergenic |
| CTGAGAAGTGGTGGGTATGA+TGG | 0.455128 | 1_4:+49401939 | Msa0167500:CDS |
| AAGAATCATTTGATTTGAGC+TGG | 0.455287 | 1_4:-49403185 | None:intergenic |
| TTCCGGTGAGTCTCCGGTTG+CGG | 0.460175 | 1_4:-49401455 | None:intergenic |
| TCACCACCGTCCGCACCGCC+TGG | 0.466420 | 1_4:+49401595 | Msa0167500:CDS |
| TGTTGTCGAGGGACATAGTC+AGG | 0.467332 | 1_4:-49401497 | None:intergenic |
| TACTAAATGTAATCATGTAC+TGG | 0.468251 | 1_4:+49403082 | Msa0167500:three_prime_UTR |
| ATATCCGCCGGTGGGGTCGG+AGG | 0.471724 | 1_4:-49401655 | None:intergenic |
| ACGAGTTGGCGATACGGGTC+GGG | 0.473229 | 1_4:+49401857 | Msa0167500:CDS |
| GTGGCATCGCCGGGAATGGA+CGG | 0.474114 | 1_4:+49401819 | Msa0167500:CDS |
| GAAGACCCGGTGGAAGGGAC+CGG | 0.475589 | 1_4:-49401569 | None:intergenic |
| TCATTTGATTTGAGCTGGCT+GGG | 0.476054 | 1_4:-49403180 | None:intergenic |
| TCGGCGGTGGACCGGAGAAT+CGG | 0.477661 | 1_4:-49401698 | None:intergenic |
| GGGAACTTCCGGTGAGTCTC+CGG | 0.493773 | 1_4:-49401461 | None:intergenic |
| AAAGATCCAAGTCCGGGTTA+CGG | 0.496461 | 1_4:-49402067 | None:intergenic |
| TCAATCTTATCCTTCAACTC+AGG | 0.497145 | 1_4:-49402095 | None:intergenic |
| ATTCAAACGAGTTGGCGATA+CGG | 0.505943 | 1_4:+49401851 | Msa0167500:CDS |
| TAGTCAGGCGAGAACGGATG+AGG | 0.506765 | 1_4:-49401482 | None:intergenic |
| ATGTGAACAATGGTGTGTAT+AGG | 0.507417 | 1_4:+49402144 | Msa0167500:CDS |
| GTACGGTGGGCCCACGGGCA+TGG | 0.510535 | 1_4:-49401747 | None:intergenic |
| TGGTTCAGTTGATGATGATA+GGG | 0.511787 | 1_4:-49402940 | None:intergenic |
| GAATGGTTGCAAGACTTTGA+AGG | 0.514214 | 1_4:+49401905 | Msa0167500:CDS |
| GACGAGAAGACCCGGTGGAA+GGG | 0.515720 | 1_4:-49401574 | None:intergenic |
| TTACAAAACTTCTCTGGGGC+CGG | 0.517177 | 1_4:+49401550 | Msa0167500:CDS |
| CTGATAAATGTCACGCCTGT+AGG | 0.518344 | 1_4:-49402677 | None:intergenic |
| GAGACCACTCGGCGGTGGAC+CGG | 0.518549 | 1_4:-49401706 | None:intergenic |
| CGTTGGCCTGCCATGCCCGT+GGG | 0.519717 | 1_4:+49401737 | Msa0167500:CDS |
| GCCGGGAATGGACGGGTCGT+GGG | 0.520755 | 1_4:+49401827 | Msa0167500:CDS |
| GGTGGTGAAAGATCCAAGTC+CGG | 0.521190 | 1_4:-49402074 | None:intergenic |
| ACGTTGGCCTGCCATGCCCG+TGG | 0.522921 | 1_4:+49401736 | Msa0167500:CDS |
| AGTCCGTGCACTCAAAGGCT+TGG | 0.523773 | 1_4:+49401776 | Msa0167500:CDS |
| GGTCTGGAATATCCGCCGGT+GGG | 0.527132 | 1_4:-49401663 | None:intergenic |
| TGAGAGTACGGTGGGCCCAC+GGG | 0.529134 | 1_4:-49401752 | None:intergenic |
| ATGAGAGTACGGTGGGCCCA+CGG | 0.532271 | 1_4:-49401753 | None:intergenic |
| GGAATTGTTGTTGTTGTCGA+GGG | 0.533030 | 1_4:-49401508 | None:intergenic |
| GCTTCCAAATTCCGATTCTC+CGG | 0.533829 | 1_4:+49401687 | Msa0167500:CDS |
| TTCCGCAACCGGAGACTCAC+CGG | 0.534590 | 1_4:+49401453 | Msa0167500:CDS |
| CGGTTGCGGAAAGTGGTTGT+CGG | 0.536348 | 1_4:-49401441 | None:intergenic |
| TGGGGCCGGTCCCTTCCACC+GGG | 0.538373 | 1_4:+49401564 | Msa0167500:CDS |
| CTTCCAAGCCTTTGAGTGCA+CGG | 0.538720 | 1_4:-49401779 | None:intergenic |
| AAATGGGTTTGCCCGTAACC+CGG | 0.538977 | 1_4:+49402055 | Msa0167500:CDS |
| TGGCATCGCCGGGAATGGAC+GGG | 0.543073 | 1_4:+49401820 | Msa0167500:CDS |
| CCGGTGTCAGTGGCATCGCC+GGG | 0.544222 | 1_4:+49401810 | Msa0167500:CDS |
| GTATATAGGCTGAGAAGTGG+TGG | 0.548876 | 1_4:+49401930 | Msa0167500:CDS |
| CTCATAGTCCGTGCACTCAA+AGG | 0.550431 | 1_4:+49401771 | Msa0167500:CDS |
| CAGAGATGAAATTGAAAGTG+TGG | 0.550937 | 1_4:-49403148 | None:intergenic |
| AACGAGTTGGCGATACGGGT+CGG | 0.551790 | 1_4:+49401856 | Msa0167500:CDS |
| TCAAATTCTCGCTATTTGTG+TGG | 0.552114 | 1_4:+49402535 | Msa0167500:CDS |
| CTCGCTCCCTCCGACCCCAC+CGG | 0.555197 | 1_4:+49401648 | Msa0167500:CDS |
| AGGAATTGTTGTTGTTGTCG+AGG | 0.555266 | 1_4:-49401509 | None:intergenic |
| GAGTCTCCGGTTGCGGAAAG+TGG | 0.555872 | 1_4:-49401448 | None:intergenic |
| GTGGTGAAAGATCCAAGTCC+GGG | 0.556634 | 1_4:-49402073 | None:intergenic |
| AGGTGGAGACCACTCGGCGG+TGG | 0.556945 | 1_4:-49401711 | None:intergenic |
| ATACCAATCTACATGCCTAC+AGG | 0.558313 | 1_4:+49402662 | Msa0167500:CDS |
| AACAGAACTCAGTAGGGAAG+AGG | 0.559020 | 1_4:-49401529 | None:intergenic |
| GAAATTCTTTGCATGCCTCA+TGG | 0.561075 | 1_4:+49402909 | Msa0167500:CDS |
| GGGACATAGTCAGGCGAGAA+CGG | 0.562237 | 1_4:-49401488 | None:intergenic |
| ACGCCTGTAGGCATGTAGAT+TGG | 0.562252 | 1_4:-49402665 | None:intergenic |
| GAAGTATATAGGCTGAGAAG+TGG | 0.562821 | 1_4:+49401927 | Msa0167500:CDS |
| CCCGGCGATGCCACTGACAC+CGG | 0.564808 | 1_4:-49401810 | None:intergenic |
| GTTCCAGGCGGTGCGGACGG+TGG | 0.565288 | 1_4:-49401598 | None:intergenic |
| TCTTTGCATGCCTCATGGCA+GGG | 0.567304 | 1_4:+49402914 | Msa0167500:CDS |
| TATATAGGCTGAGAAGTGGT+GGG | 0.570077 | 1_4:+49401931 | Msa0167500:CDS |
| GGAGTTCCAGGCGGTGCGGA+CGG | 0.570604 | 1_4:-49401601 | None:intergenic |
| GAGTCTTTGTTCCACAACAT+TGG | 0.572372 | 1_4:-49401975 | None:intergenic |
| GAGAATCGGAATTTGGAAGC+GGG | 0.577136 | 1_4:-49401684 | None:intergenic |
| CTAATGCTCCCTGGATTGAG+AGG | 0.577711 | 1_4:-49402858 | None:intergenic |
| GTCTGGAATATCCGCCGGTG+GGG | 0.581278 | 1_4:-49401662 | None:intergenic |
| GGAGAATCGGAATTTGGAAG+CGG | 0.584387 | 1_4:-49401685 | None:intergenic |
| AGCGGGTCTGGAATATCCGC+CGG | 0.585759 | 1_4:-49401667 | None:intergenic |
| CGATGCCACTGACACCGGTA+CGG | 0.586344 | 1_4:-49401805 | None:intergenic |
| GGGTCTGGAATATCCGCCGG+TGG | 0.588168 | 1_4:-49401664 | None:intergenic |
| CCATTCGCCTTATCCAAACT+CGG | 0.588222 | 1_4:-49401888 | None:intergenic |
| CCGAGTTTGGATAAGGCGAA+TGG | 0.588244 | 1_4:+49401888 | Msa0167500:CDS |
| TGACGAGAAGACCCGGTGGA+AGG | 0.588522 | 1_4:-49401575 | None:intergenic |
| GATCCACTGTGCCAATGTTG+TGG | 0.590586 | 1_4:+49401964 | Msa0167500:CDS |
| TCGTGGGAATTCAAACGAGT+TGG | 0.593252 | 1_4:+49401843 | Msa0167500:CDS |
| ACGTAGAGGTGGAGACCACT+CGG | 0.594306 | 1_4:-49401717 | None:intergenic |
| ATCTTATCCTTCAACTCAGG+TGG | 0.602713 | 1_4:-49402092 | None:intergenic |
| ATAATTGGTCTAATGCTCCC+TGG | 0.605043 | 1_4:-49402867 | None:intergenic |
| AAATGTAATCATGTACTGGC+TGG | 0.607690 | 1_4:+49403086 | Msa0167500:three_prime_UTR |
| AGATTCCGTACCGGTGTCAG+TGG | 0.611699 | 1_4:+49401800 | Msa0167500:CDS |
| GTGCACGGACTATGAGAGTA+CGG | 0.611941 | 1_4:-49401764 | None:intergenic |
| TGAAGGATAAGATTGAGGAA+TGG | 0.617418 | 1_4:+49402102 | Msa0167500:CDS |
| ATGGCAGGCCAACGTAGAGG+TGG | 0.617427 | 1_4:-49401728 | None:intergenic |
| ACGGTGGTGACGAGAAGACC+CGG | 0.617961 | 1_4:-49401582 | None:intergenic |
| ACGGGCAAACCCATTTAACC+CGG | 0.621034 | 1_4:-49402048 | None:intergenic |
| CCAAGAAGCATATGATAAAG+CGG | 0.622342 | 1_4:+49402468 | Msa0167500:CDS |
| GCTCCCTCCGACCCCACCGG+CGG | 0.625949 | 1_4:+49401651 | Msa0167500:CDS |
| ACAAGGTGGTGTGAGGAAGA+GGG | 0.626050 | 1_4:-49401408 | None:intergenic |
| AGTGGTCTCCACCTCTACGT+TGG | 0.627837 | 1_4:+49401720 | Msa0167500:CDS |
| TGAGTTGAAGGATAAGATTG+AGG | 0.633365 | 1_4:+49402097 | Msa0167500:CDS |
| TACATACAGAACAGAACCAA+CGG | 0.637946 | 1_4:-49402998 | None:intergenic |
| AGTCAGGCGAGAACGGATGA+GGG | 0.643628 | 1_4:-49401481 | None:intergenic |
| GGCATGGCAGGCCAACGTAG+AGG | 0.643969 | 1_4:-49401731 | None:intergenic |
| AGGCTTGGAAGATTCCGTAC+CGG | 0.644423 | 1_4:+49401791 | Msa0167500:CDS |
| TTGCGGAAAGTGGTTGTCGG+AGG | 0.645779 | 1_4:-49401438 | None:intergenic |
| ACGGACTATGAGAGTACGGT+GGG | 0.649294 | 1_4:-49401760 | None:intergenic |
| AATGACGACAAGGTGGTGTG+AGG | 0.649943 | 1_4:-49401415 | None:intergenic |
| GTTCCACAACATTGGCACAG+TGG | 0.661542 | 1_4:-49401967 | None:intergenic |
| TTGTCGGAGGAATGACGACA+AGG | 0.674643 | 1_4:-49401425 | None:intergenic |
| ACGTGGAGTTCCAGGCGGTG+CGG | 0.675896 | 1_4:-49401605 | None:intergenic |
| TTCTCCGGTCCACCGCCGAG+TGG | 0.686008 | 1_4:+49401702 | Msa0167500:CDS |
| ATATATCCAAATGTGAACAA+TGG | 0.688738 | 1_4:+49402134 | Msa0167500:CDS |
| AGACATCATGAGCTGCCACG+TGG | 0.697920 | 1_4:-49401622 | None:intergenic |
| CTGCCACGTGGAGTTCCAGG+CGG | 0.705558 | 1_4:-49401610 | None:intergenic |
| GATAGGGATTCCCTGCCATG+AGG | 0.706486 | 1_4:-49402924 | None:intergenic |
| CACGGACTATGAGAGTACGG+TGG | 0.713455 | 1_4:-49401761 | None:intergenic |
| TCTGTTACAAAACTTCTCTG+GGG | 0.722777 | 1_4:+49401546 | Msa0167500:CDS |
| TCGGAGGAATGACGACAAGG+TGG | 0.725756 | 1_4:-49401422 | None:intergenic |
| GCACCGCCTGGAACTCCACG+TGG | 0.732654 | 1_4:+49401607 | Msa0167500:CDS |
| GTGGTGACGAGAAGACCCGG+TGG | 0.741723 | 1_4:-49401579 | None:intergenic |
| TAGAGGTGGAGACCACTCGG+CGG | 0.783474 | 1_4:-49401714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTCAATTGTTTAATTC+CGG | + | chr1_4:49402029-49402048 | Msa0167500:CDS | 15.0% |
| !!! | TTGTAATTTTCAAGAAATTA+TGG | + | chr1_4:49402812-49402831 | Msa0167500:CDS | 15.0% |
| !! | ATAATTCAATTGTTTAATTC+CGG | + | chr1_4:49402029-49402048 | Msa0167500:CDS | 15.0% |
| !!! | TTGTAATTTTCAAGAAATTA+TGG | + | chr1_4:49402812-49402831 | Msa0167500:CDS | 15.0% |
| !! | TAATTCAATTGTTTAATTCC+GGG | + | chr1_4:49402030-49402049 | Msa0167500:CDS | 20.0% |
| !!! | TCATCATTGATTATTGAATT+GGG | + | chr1_4:49402401-49402420 | Msa0167500:intron | 20.0% |
| !!! | AATTTTCAAGAAATTATGGA+TGG | + | chr1_4:49402816-49402835 | Msa0167500:CDS | 20.0% |
| !! | TAATTCAATTGTTTAATTCC+GGG | + | chr1_4:49402030-49402049 | Msa0167500:CDS | 20.0% |
| !!! | TCATCATTGATTATTGAATT+GGG | + | chr1_4:49402401-49402420 | Msa0167500:intron | 20.0% |
| !!! | AATTTTCAAGAAATTATGGA+TGG | + | chr1_4:49402816-49402835 | Msa0167500:CDS | 20.0% |
| ! | ATATATCCAAATGTGAACAA+TGG | + | chr1_4:49402134-49402153 | Msa0167500:CDS | 25.0% |
| !! | GTCATCATTGATTATTGAAT+TGG | + | chr1_4:49402400-49402419 | Msa0167500:intron | 25.0% |
| !! | GCTTTGCTCAAAAAATTTTT+AGG | + | chr1_4:49402706-49402725 | Msa0167500:intron | 25.0% |
| !! | TGAACCAGTATTTGTTAAAT+AGG | + | chr1_4:49402956-49402975 | Msa0167500:CDS | 25.0% |
| ! | ATTGCCTATTTAACAAATAC+TGG | - | chr1_4:49402963-49402982 | None:intergenic | 25.0% |
| ! | ATATGCAATTCAACGTTTAT+AGG | + | chr1_4:49403030-49403049 | Msa0167500:three_prime_UTR | 25.0% |
| ! | TACTAAATGTAATCATGTAC+TGG | + | chr1_4:49403082-49403101 | Msa0167500:three_prime_UTR | 25.0% |
| ! | ATATATCCAAATGTGAACAA+TGG | + | chr1_4:49402134-49402153 | Msa0167500:CDS | 25.0% |
| !! | GTCATCATTGATTATTGAAT+TGG | + | chr1_4:49402400-49402419 | Msa0167500:intron | 25.0% |
| !! | GCTTTGCTCAAAAAATTTTT+AGG | + | chr1_4:49402706-49402725 | Msa0167500:intron | 25.0% |
| !! | TGAACCAGTATTTGTTAAAT+AGG | + | chr1_4:49402956-49402975 | Msa0167500:CDS | 25.0% |
| ! | ATTGCCTATTTAACAAATAC+TGG | - | chr1_4:49402963-49402982 | None:intergenic | 25.0% |
| ! | ATATGCAATTCAACGTTTAT+AGG | + | chr1_4:49403030-49403049 | Msa0167500:three_prime_UTR | 25.0% |
| ! | TACTAAATGTAATCATGTAC+TGG | + | chr1_4:49403082-49403101 | Msa0167500:three_prime_UTR | 25.0% |
| ! | TTTTGTAACAGAACTCAGTA+GGG | - | chr1_4:49401538-49401557 | None:intergenic | 30.0% |
| TTCTGTTACAAAACTTCTCT+GGG | + | chr1_4:49401545-49401564 | Msa0167500:CDS | 30.0% | |
| ! | AGACTTTGAAGGAAGTATAT+AGG | + | chr1_4:49401916-49401935 | Msa0167500:CDS | 30.0% |
| CTCATTACATACAACATCTT+TGG | - | chr1_4:49402000-49402019 | None:intergenic | 30.0% | |
| TTGTTTAATTCCGGGTTAAA+TGG | + | chr1_4:49402038-49402057 | Msa0167500:CDS | 30.0% | |
| TGTTTAATTCCGGGTTAAAT+GGG | + | chr1_4:49402039-49402058 | Msa0167500:CDS | 30.0% | |
| CAATGAGTTTGAGAAAATCA+CGG | + | chr1_4:49402205-49402224 | Msa0167500:intron | 30.0% | |
| ! | GTTTTGTACATTAGACAAGT+TGG | + | chr1_4:49402501-49402520 | Msa0167500:CDS | 30.0% |
| GTCTGTTTACTACTTTGATT+CGG | + | chr1_4:49402584-49402603 | Msa0167500:CDS | 30.0% | |
| ATACTCATACAACTTCTTCT+TGG | - | chr1_4:49402644-49402663 | None:intergenic | 30.0% | |
| TTACAAGTATCTGCAACTTT+GGG | - | chr1_4:49402798-49402817 | None:intergenic | 30.0% | |
| ATTACAAGTATCTGCAACTT+TGG | - | chr1_4:49402799-49402818 | None:intergenic | 30.0% | |
| ! | TGCAAAAAAGGGGAAAATTT+TGG | - | chr1_4:49403121-49403140 | None:intergenic | 30.0% |
| ! | TTTTGTAACAGAACTCAGTA+GGG | - | chr1_4:49401538-49401557 | None:intergenic | 30.0% |
| TTCTGTTACAAAACTTCTCT+GGG | + | chr1_4:49401545-49401564 | Msa0167500:CDS | 30.0% | |
| ! | AGACTTTGAAGGAAGTATAT+AGG | + | chr1_4:49401916-49401935 | Msa0167500:CDS | 30.0% |
| CTCATTACATACAACATCTT+TGG | - | chr1_4:49402000-49402019 | None:intergenic | 30.0% | |
| TTGTTTAATTCCGGGTTAAA+TGG | + | chr1_4:49402038-49402057 | Msa0167500:CDS | 30.0% | |
| TGTTTAATTCCGGGTTAAAT+GGG | + | chr1_4:49402039-49402058 | Msa0167500:CDS | 30.0% | |
| CAATGAGTTTGAGAAAATCA+CGG | + | chr1_4:49402205-49402224 | Msa0167500:intron | 30.0% | |
| ! | GTTTTGTACATTAGACAAGT+TGG | + | chr1_4:49402501-49402520 | Msa0167500:CDS | 30.0% |
| GTCTGTTTACTACTTTGATT+CGG | + | chr1_4:49402584-49402603 | Msa0167500:CDS | 30.0% | |
| ATACTCATACAACTTCTTCT+TGG | - | chr1_4:49402644-49402663 | None:intergenic | 30.0% | |
| TTACAAGTATCTGCAACTTT+GGG | - | chr1_4:49402798-49402817 | None:intergenic | 30.0% | |
| ATTACAAGTATCTGCAACTT+TGG | - | chr1_4:49402799-49402818 | None:intergenic | 30.0% | |
| ! | TGCAAAAAAGGGGAAAATTT+TGG | - | chr1_4:49403121-49403140 | None:intergenic | 30.0% |
| ! | GTTTTGTAACAGAACTCAGT+AGG | - | chr1_4:49401539-49401558 | None:intergenic | 35.0% |
| GTTCTGTTACAAAACTTCTC+TGG | + | chr1_4:49401544-49401563 | Msa0167500:CDS | 35.0% | |
| TCTGTTACAAAACTTCTCTG+GGG | + | chr1_4:49401546-49401565 | Msa0167500:CDS | 35.0% | |
| AATTAGTCCGAGTTTGGATA+AGG | + | chr1_4:49401881-49401900 | Msa0167500:CDS | 35.0% | |
| TCAATCTTATCCTTCAACTC+AGG | - | chr1_4:49402098-49402117 | None:intergenic | 35.0% | |
| ! | TGAGTTGAAGGATAAGATTG+AGG | + | chr1_4:49402097-49402116 | Msa0167500:CDS | 35.0% |
| TGAAGGATAAGATTGAGGAA+TGG | + | chr1_4:49402102-49402121 | Msa0167500:CDS | 35.0% | |
| TACACACCATTGTTCACATT+TGG | - | chr1_4:49402143-49402162 | None:intergenic | 35.0% | |
| ATGTGAACAATGGTGTGTAT+AGG | + | chr1_4:49402144-49402163 | Msa0167500:CDS | 35.0% | |
| !!! | GACACTTTTGGTTTTGTTCA+AGG | + | chr1_4:49402229-49402248 | Msa0167500:intron | 35.0% |
| ATGATGAATGTCTACTCCAA+TGG | - | chr1_4:49402367-49402386 | None:intergenic | 35.0% | |
| ATTGTTGCAATTTGCATTGC+AGG | + | chr1_4:49402428-49402447 | Msa0167500:intron | 35.0% | |
| ! | CCAAGAAGCATATGATAAAG+CGG | + | chr1_4:49402468-49402487 | Msa0167500:CDS | 35.0% |
| TCAAATTCTCGCTATTTGTG+TGG | + | chr1_4:49402535-49402554 | Msa0167500:CDS | 35.0% | |
| ! | TCTGAAGTTGAAGGCATAAT+TGG | - | chr1_4:49402885-49402904 | None:intergenic | 35.0% |
| !! | ATTTCATGCTCTGAAGTTGA+AGG | - | chr1_4:49402894-49402913 | None:intergenic | 35.0% |
| !! | TGGTTCAGTTGATGATGATA+GGG | - | chr1_4:49402943-49402962 | None:intergenic | 35.0% |
| TGAACAAATCTTTCATCCGT+TGG | + | chr1_4:49402982-49403001 | Msa0167500:three_prime_UTR | 35.0% | |
| TACATACAGAACAGAACCAA+CGG | - | chr1_4:49403001-49403020 | None:intergenic | 35.0% | |
| ! | AAATGTAATCATGTACTGGC+TGG | + | chr1_4:49403086-49403105 | Msa0167500:three_prime_UTR | 35.0% |
| !! | TGGTTTGAGTTGCAAAAAAG+GGG | - | chr1_4:49403131-49403150 | None:intergenic | 35.0% |
| !! | GTGGTTTGAGTTGCAAAAAA+GGG | - | chr1_4:49403132-49403151 | None:intergenic | 35.0% |
| !! | TGTGGTTTGAGTTGCAAAAA+AGG | - | chr1_4:49403133-49403152 | None:intergenic | 35.0% |
| CAGAGATGAAATTGAAAGTG+TGG | - | chr1_4:49403151-49403170 | None:intergenic | 35.0% | |
| CACACTTTCAATTTCATCTC+TGG | + | chr1_4:49403149-49403168 | Msa0167500:three_prime_UTR | 35.0% | |
| ! | GTTTTGTAACAGAACTCAGT+AGG | - | chr1_4:49401539-49401558 | None:intergenic | 35.0% |
| GTTCTGTTACAAAACTTCTC+TGG | + | chr1_4:49401544-49401563 | Msa0167500:CDS | 35.0% | |
| TCTGTTACAAAACTTCTCTG+GGG | + | chr1_4:49401546-49401565 | Msa0167500:CDS | 35.0% | |
| AATTAGTCCGAGTTTGGATA+AGG | + | chr1_4:49401881-49401900 | Msa0167500:CDS | 35.0% | |
| TCAATCTTATCCTTCAACTC+AGG | - | chr1_4:49402098-49402117 | None:intergenic | 35.0% | |
| ! | TGAGTTGAAGGATAAGATTG+AGG | + | chr1_4:49402097-49402116 | Msa0167500:CDS | 35.0% |
| TGAAGGATAAGATTGAGGAA+TGG | + | chr1_4:49402102-49402121 | Msa0167500:CDS | 35.0% | |
| TACACACCATTGTTCACATT+TGG | - | chr1_4:49402143-49402162 | None:intergenic | 35.0% | |
| ATGTGAACAATGGTGTGTAT+AGG | + | chr1_4:49402144-49402163 | Msa0167500:CDS | 35.0% | |
| !!! | GACACTTTTGGTTTTGTTCA+AGG | + | chr1_4:49402229-49402248 | Msa0167500:intron | 35.0% |
| ATGATGAATGTCTACTCCAA+TGG | - | chr1_4:49402367-49402386 | None:intergenic | 35.0% | |
| ATTGTTGCAATTTGCATTGC+AGG | + | chr1_4:49402428-49402447 | Msa0167500:intron | 35.0% | |
| ! | CCAAGAAGCATATGATAAAG+CGG | + | chr1_4:49402468-49402487 | Msa0167500:CDS | 35.0% |
| TCAAATTCTCGCTATTTGTG+TGG | + | chr1_4:49402535-49402554 | Msa0167500:CDS | 35.0% | |
| ! | TCTGAAGTTGAAGGCATAAT+TGG | - | chr1_4:49402885-49402904 | None:intergenic | 35.0% |
| !! | ATTTCATGCTCTGAAGTTGA+AGG | - | chr1_4:49402894-49402913 | None:intergenic | 35.0% |
| !! | TGGTTCAGTTGATGATGATA+GGG | - | chr1_4:49402943-49402962 | None:intergenic | 35.0% |
| TGAACAAATCTTTCATCCGT+TGG | + | chr1_4:49402982-49403001 | Msa0167500:three_prime_UTR | 35.0% | |
| TACATACAGAACAGAACCAA+CGG | - | chr1_4:49403001-49403020 | None:intergenic | 35.0% | |
| ! | AAATGTAATCATGTACTGGC+TGG | + | chr1_4:49403086-49403105 | Msa0167500:three_prime_UTR | 35.0% |
| !! | TGGTTTGAGTTGCAAAAAAG+GGG | - | chr1_4:49403131-49403150 | None:intergenic | 35.0% |
| !! | GTGGTTTGAGTTGCAAAAAA+GGG | - | chr1_4:49403132-49403151 | None:intergenic | 35.0% |
| !! | TGTGGTTTGAGTTGCAAAAA+AGG | - | chr1_4:49403133-49403152 | None:intergenic | 35.0% |
| CAGAGATGAAATTGAAAGTG+TGG | - | chr1_4:49403151-49403170 | None:intergenic | 35.0% | |
| CACACTTTCAATTTCATCTC+TGG | + | chr1_4:49403149-49403168 | Msa0167500:three_prime_UTR | 35.0% | |
| ! | GGAATTGTTGTTGTTGTCGA+GGG | - | chr1_4:49401511-49401530 | None:intergenic | 40.0% |
| ! | AGGAATTGTTGTTGTTGTCG+AGG | - | chr1_4:49401512-49401531 | None:intergenic | 40.0% |
| ! | ATTCAAACGAGTTGGCGATA+CGG | + | chr1_4:49401851-49401870 | Msa0167500:CDS | 40.0% |
| GAATGGTTGCAAGACTTTGA+AGG | + | chr1_4:49401905-49401924 | Msa0167500:CDS | 40.0% | |
| GAAGTATATAGGCTGAGAAG+TGG | + | chr1_4:49401927-49401946 | Msa0167500:CDS | 40.0% | |
| TATATAGGCTGAGAAGTGGT+GGG | + | chr1_4:49401931-49401950 | Msa0167500:CDS | 40.0% | |
| GAGTCTTTGTTCCACAACAT+TGG | - | chr1_4:49401978-49401997 | None:intergenic | 40.0% | |
| ATCTTATCCTTCAACTCAGG+TGG | - | chr1_4:49402095-49402114 | None:intergenic | 40.0% | |
| ! | GAAAATCACGGTGACACTTT+TGG | + | chr1_4:49402217-49402236 | Msa0167500:intron | 40.0% |
| TATCATTGTAGCGCAAGTCA+TGG | + | chr1_4:49402254-49402273 | Msa0167500:intron | 40.0% | |
| !! | ATGAGTTGGAAGCATCCAAA+GGG | - | chr1_4:49402343-49402362 | None:intergenic | 40.0% |
| !! | TATGAGTTGGAAGCATCCAA+AGG | - | chr1_4:49402344-49402363 | None:intergenic | 40.0% |
| ATGCTTCCAACTCATACCAT+TGG | + | chr1_4:49402348-49402367 | Msa0167500:intron | 40.0% | |
| TCTACTCCAATGGTATGAGT+TGG | - | chr1_4:49402357-49402376 | None:intergenic | 40.0% | |
| CCGCTTTATCATATGCTTCT+TGG | - | chr1_4:49402471-49402490 | None:intergenic | 40.0% | |
| ATACCAATCTACATGCCTAC+AGG | + | chr1_4:49402662-49402681 | Msa0167500:CDS | 40.0% | |
| ! | ATAATTGGTCTAATGCTCCC+TGG | - | chr1_4:49402870-49402889 | None:intergenic | 40.0% |
| GAAATTCTTTGCATGCCTCA+TGG | + | chr1_4:49402909-49402928 | Msa0167500:CDS | 40.0% | |
| !! | CTGGTTCAGTTGATGATGAT+AGG | - | chr1_4:49402944-49402963 | None:intergenic | 40.0% |
| ! | GGAATTGTTGTTGTTGTCGA+GGG | - | chr1_4:49401511-49401530 | None:intergenic | 40.0% |
| ! | AGGAATTGTTGTTGTTGTCG+AGG | - | chr1_4:49401512-49401531 | None:intergenic | 40.0% |
| ! | ATTCAAACGAGTTGGCGATA+CGG | + | chr1_4:49401851-49401870 | Msa0167500:CDS | 40.0% |
| GAATGGTTGCAAGACTTTGA+AGG | + | chr1_4:49401905-49401924 | Msa0167500:CDS | 40.0% | |
| GAAGTATATAGGCTGAGAAG+TGG | + | chr1_4:49401927-49401946 | Msa0167500:CDS | 40.0% | |
| TATATAGGCTGAGAAGTGGT+GGG | + | chr1_4:49401931-49401950 | Msa0167500:CDS | 40.0% | |
| GAGTCTTTGTTCCACAACAT+TGG | - | chr1_4:49401978-49401997 | None:intergenic | 40.0% | |
| ATCTTATCCTTCAACTCAGG+TGG | - | chr1_4:49402095-49402114 | None:intergenic | 40.0% | |
| ! | GAAAATCACGGTGACACTTT+TGG | + | chr1_4:49402217-49402236 | Msa0167500:intron | 40.0% |
| TATCATTGTAGCGCAAGTCA+TGG | + | chr1_4:49402254-49402273 | Msa0167500:intron | 40.0% | |
| !! | ATGAGTTGGAAGCATCCAAA+GGG | - | chr1_4:49402343-49402362 | None:intergenic | 40.0% |
| !! | TATGAGTTGGAAGCATCCAA+AGG | - | chr1_4:49402344-49402363 | None:intergenic | 40.0% |
| ATGCTTCCAACTCATACCAT+TGG | + | chr1_4:49402348-49402367 | Msa0167500:intron | 40.0% | |
| TCTACTCCAATGGTATGAGT+TGG | - | chr1_4:49402357-49402376 | None:intergenic | 40.0% | |
| CCGCTTTATCATATGCTTCT+TGG | - | chr1_4:49402471-49402490 | None:intergenic | 40.0% | |
| ATACCAATCTACATGCCTAC+AGG | + | chr1_4:49402662-49402681 | Msa0167500:CDS | 40.0% | |
| ! | ATAATTGGTCTAATGCTCCC+TGG | - | chr1_4:49402870-49402889 | None:intergenic | 40.0% |
| GAAATTCTTTGCATGCCTCA+TGG | + | chr1_4:49402909-49402928 | Msa0167500:CDS | 40.0% | |
| !! | CTGGTTCAGTTGATGATGAT+AGG | - | chr1_4:49402944-49402963 | None:intergenic | 40.0% |
| AACAGAACTCAGTAGGGAAG+AGG | - | chr1_4:49401532-49401551 | None:intergenic | 45.0% | |
| !! | TTACAAAACTTCTCTGGGGC+CGG | + | chr1_4:49401550-49401569 | Msa0167500:CDS | 45.0% |
| GAGAATCGGAATTTGGAAGC+GGG | - | chr1_4:49401687-49401706 | None:intergenic | 45.0% | |
| GGAGAATCGGAATTTGGAAG+CGG | - | chr1_4:49401688-49401707 | None:intergenic | 45.0% | |
| GCTTCCAAATTCCGATTCTC+CGG | + | chr1_4:49401687-49401706 | Msa0167500:CDS | 45.0% | |
| TCGTGGGAATTCAAACGAGT+TGG | + | chr1_4:49401843-49401862 | Msa0167500:CDS | 45.0% | |
| ! | TTCAAACGAGTTGGCGATAC+GGG | + | chr1_4:49401852-49401871 | Msa0167500:CDS | 45.0% |
| CCATTCGCCTTATCCAAACT+CGG | - | chr1_4:49401891-49401910 | None:intergenic | 45.0% | |
| GTATATAGGCTGAGAAGTGG+TGG | + | chr1_4:49401930-49401949 | Msa0167500:CDS | 45.0% | |
| AAAGATCCAAGTCCGGGTTA+CGG | - | chr1_4:49402070-49402089 | None:intergenic | 45.0% | |
| ! | TCTTTCACCACCTGAGTTGA+AGG | + | chr1_4:49402085-49402104 | Msa0167500:CDS | 45.0% |
| ACAACAGTTAGACCTCCCTT+TGG | + | chr1_4:49402325-49402344 | Msa0167500:intron | 45.0% | |
| TGCAATTTGCATTGCAGGTG+TGG | + | chr1_4:49402433-49402452 | Msa0167500:intron | 45.0% | |
| GCAATTTGCATTGCAGGTGT+GGG | + | chr1_4:49402434-49402453 | Msa0167500:intron | 45.0% | |
| CTGATAAATGTCACGCCTGT+AGG | - | chr1_4:49402680-49402699 | None:intergenic | 45.0% | |
| CTACAGGCGTGACATTTATC+AGG | + | chr1_4:49402678-49402697 | Msa0167500:CDS | 45.0% | |
| GTTGTATGTGTTTCGTGCCT+TGG | + | chr1_4:49402765-49402784 | Msa0167500:intron | 45.0% | |
| ! | CAACTTTGGGAATCTGTCCA+AGG | - | chr1_4:49402785-49402804 | None:intergenic | 45.0% |
| ! | ACCCTTTTTCCTCTCAATCC+AGG | + | chr1_4:49402849-49402868 | Msa0167500:CDS | 45.0% |
| CCCTGGATTGAGAGGAAAAA+GGG | - | chr1_4:49402853-49402872 | None:intergenic | 45.0% | |
| ! | CCCTTTTTCCTCTCAATCCA+GGG | + | chr1_4:49402850-49402869 | Msa0167500:CDS | 45.0% |
| TCCCTGGATTGAGAGGAAAA+AGG | - | chr1_4:49402854-49402873 | None:intergenic | 45.0% | |
| AACAGAACTCAGTAGGGAAG+AGG | - | chr1_4:49401532-49401551 | None:intergenic | 45.0% | |
| !! | TTACAAAACTTCTCTGGGGC+CGG | + | chr1_4:49401550-49401569 | Msa0167500:CDS | 45.0% |
| GAGAATCGGAATTTGGAAGC+GGG | - | chr1_4:49401687-49401706 | None:intergenic | 45.0% | |
| GGAGAATCGGAATTTGGAAG+CGG | - | chr1_4:49401688-49401707 | None:intergenic | 45.0% | |
| GCTTCCAAATTCCGATTCTC+CGG | + | chr1_4:49401687-49401706 | Msa0167500:CDS | 45.0% | |
| TCGTGGGAATTCAAACGAGT+TGG | + | chr1_4:49401843-49401862 | Msa0167500:CDS | 45.0% | |
| ! | TTCAAACGAGTTGGCGATAC+GGG | + | chr1_4:49401852-49401871 | Msa0167500:CDS | 45.0% |
| CCATTCGCCTTATCCAAACT+CGG | - | chr1_4:49401891-49401910 | None:intergenic | 45.0% | |
| GTATATAGGCTGAGAAGTGG+TGG | + | chr1_4:49401930-49401949 | Msa0167500:CDS | 45.0% | |
| AAAGATCCAAGTCCGGGTTA+CGG | - | chr1_4:49402070-49402089 | None:intergenic | 45.0% | |
| ! | TCTTTCACCACCTGAGTTGA+AGG | + | chr1_4:49402085-49402104 | Msa0167500:CDS | 45.0% |
| ACAACAGTTAGACCTCCCTT+TGG | + | chr1_4:49402325-49402344 | Msa0167500:intron | 45.0% | |
| TGCAATTTGCATTGCAGGTG+TGG | + | chr1_4:49402433-49402452 | Msa0167500:intron | 45.0% | |
| GCAATTTGCATTGCAGGTGT+GGG | + | chr1_4:49402434-49402453 | Msa0167500:intron | 45.0% | |
| CTGATAAATGTCACGCCTGT+AGG | - | chr1_4:49402680-49402699 | None:intergenic | 45.0% | |
| CTACAGGCGTGACATTTATC+AGG | + | chr1_4:49402678-49402697 | Msa0167500:CDS | 45.0% | |
| GTTGTATGTGTTTCGTGCCT+TGG | + | chr1_4:49402765-49402784 | Msa0167500:intron | 45.0% | |
| ! | CAACTTTGGGAATCTGTCCA+AGG | - | chr1_4:49402785-49402804 | None:intergenic | 45.0% |
| ! | ACCCTTTTTCCTCTCAATCC+AGG | + | chr1_4:49402849-49402868 | Msa0167500:CDS | 45.0% |
| CCCTGGATTGAGAGGAAAAA+GGG | - | chr1_4:49402853-49402872 | None:intergenic | 45.0% | |
| ! | CCCTTTTTCCTCTCAATCCA+GGG | + | chr1_4:49402850-49402869 | Msa0167500:CDS | 45.0% |
| TCCCTGGATTGAGAGGAAAA+AGG | - | chr1_4:49402854-49402873 | None:intergenic | 45.0% | |
| ACAAGGTGGTGTGAGGAAGA+GGG | - | chr1_4:49401411-49401430 | None:intergenic | 50.0% | |
| AATGACGACAAGGTGGTGTG+AGG | - | chr1_4:49401418-49401437 | None:intergenic | 50.0% | |
| TTGTCGGAGGAATGACGACA+AGG | - | chr1_4:49401428-49401447 | None:intergenic | 50.0% | |
| AGAACGGATGAGGGAACTTC+CGG | - | chr1_4:49401475-49401494 | None:intergenic | 50.0% | |
| TGTTGTCGAGGGACATAGTC+AGG | - | chr1_4:49401500-49401519 | None:intergenic | 50.0% | |
| TGGACCGGAGAATCGGAATT+TGG | - | chr1_4:49401694-49401713 | None:intergenic | 50.0% | |
| ! | ACGGACTATGAGAGTACGGT+GGG | - | chr1_4:49401763-49401782 | None:intergenic | 50.0% |
| ! | GTGCACGGACTATGAGAGTA+CGG | - | chr1_4:49401767-49401786 | None:intergenic | 50.0% |
| CTCATAGTCCGTGCACTCAA+AGG | + | chr1_4:49401771-49401790 | Msa0167500:CDS | 50.0% | |
| CTTCCAAGCCTTTGAGTGCA+CGG | - | chr1_4:49401782-49401801 | None:intergenic | 50.0% | |
| AGGCTTGGAAGATTCCGTAC+CGG | + | chr1_4:49401791-49401810 | Msa0167500:CDS | 50.0% | |
| TCGGGCAATTAGTCCGAGTT+TGG | + | chr1_4:49401875-49401894 | Msa0167500:CDS | 50.0% | |
| CCGAGTTTGGATAAGGCGAA+TGG | + | chr1_4:49401888-49401907 | Msa0167500:CDS | 50.0% | |
| !! | CTGAGAAGTGGTGGGTATGA+TGG | + | chr1_4:49401939-49401958 | Msa0167500:CDS | 50.0% |
| GATCCACTGTGCCAATGTTG+TGG | + | chr1_4:49401964-49401983 | Msa0167500:CDS | 50.0% | |
| GTTCCACAACATTGGCACAG+TGG | - | chr1_4:49401970-49401989 | None:intergenic | 50.0% | |
| ACGGGCAAACCCATTTAACC+CGG | - | chr1_4:49402051-49402070 | None:intergenic | 50.0% | |
| ! | AAATGGGTTTGCCCGTAACC+CGG | + | chr1_4:49402055-49402074 | Msa0167500:CDS | 50.0% |
| AAGATCCAAGTCCGGGTTAC+GGG | - | chr1_4:49402069-49402088 | None:intergenic | 50.0% | |
| GTGGTGAAAGATCCAAGTCC+GGG | - | chr1_4:49402076-49402095 | None:intergenic | 50.0% | |
| GGTGGTGAAAGATCCAAGTC+CGG | - | chr1_4:49402077-49402096 | None:intergenic | 50.0% | |
| !! | AGTTGGAAGCATCCAAAGGG+AGG | - | chr1_4:49402340-49402359 | None:intergenic | 50.0% |
| ACGCCTGTAGGCATGTAGAT+TGG | - | chr1_4:49402668-49402687 | None:intergenic | 50.0% | |
| CTAATGCTCCCTGGATTGAG+AGG | - | chr1_4:49402861-49402880 | None:intergenic | 50.0% | |
| TTCTTTGCATGCCTCATGGC+AGG | + | chr1_4:49402913-49402932 | Msa0167500:CDS | 50.0% | |
| TCTTTGCATGCCTCATGGCA+GGG | + | chr1_4:49402914-49402933 | Msa0167500:CDS | 50.0% | |
| ACAAGGTGGTGTGAGGAAGA+GGG | - | chr1_4:49401411-49401430 | None:intergenic | 50.0% | |
| AATGACGACAAGGTGGTGTG+AGG | - | chr1_4:49401418-49401437 | None:intergenic | 50.0% | |
| TTGTCGGAGGAATGACGACA+AGG | - | chr1_4:49401428-49401447 | None:intergenic | 50.0% | |
| AGAACGGATGAGGGAACTTC+CGG | - | chr1_4:49401475-49401494 | None:intergenic | 50.0% | |
| TGTTGTCGAGGGACATAGTC+AGG | - | chr1_4:49401500-49401519 | None:intergenic | 50.0% | |
| TGGACCGGAGAATCGGAATT+TGG | - | chr1_4:49401694-49401713 | None:intergenic | 50.0% | |
| ! | ACGGACTATGAGAGTACGGT+GGG | - | chr1_4:49401763-49401782 | None:intergenic | 50.0% |
| ! | GTGCACGGACTATGAGAGTA+CGG | - | chr1_4:49401767-49401786 | None:intergenic | 50.0% |
| CTCATAGTCCGTGCACTCAA+AGG | + | chr1_4:49401771-49401790 | Msa0167500:CDS | 50.0% | |
| CTTCCAAGCCTTTGAGTGCA+CGG | - | chr1_4:49401782-49401801 | None:intergenic | 50.0% | |
| AGGCTTGGAAGATTCCGTAC+CGG | + | chr1_4:49401791-49401810 | Msa0167500:CDS | 50.0% | |
| TCGGGCAATTAGTCCGAGTT+TGG | + | chr1_4:49401875-49401894 | Msa0167500:CDS | 50.0% | |
| CCGAGTTTGGATAAGGCGAA+TGG | + | chr1_4:49401888-49401907 | Msa0167500:CDS | 50.0% | |
| !! | CTGAGAAGTGGTGGGTATGA+TGG | + | chr1_4:49401939-49401958 | Msa0167500:CDS | 50.0% |
| GATCCACTGTGCCAATGTTG+TGG | + | chr1_4:49401964-49401983 | Msa0167500:CDS | 50.0% | |
| GTTCCACAACATTGGCACAG+TGG | - | chr1_4:49401970-49401989 | None:intergenic | 50.0% | |
| ACGGGCAAACCCATTTAACC+CGG | - | chr1_4:49402051-49402070 | None:intergenic | 50.0% | |
| ! | AAATGGGTTTGCCCGTAACC+CGG | + | chr1_4:49402055-49402074 | Msa0167500:CDS | 50.0% |
| AAGATCCAAGTCCGGGTTAC+GGG | - | chr1_4:49402069-49402088 | None:intergenic | 50.0% | |
| GTGGTGAAAGATCCAAGTCC+GGG | - | chr1_4:49402076-49402095 | None:intergenic | 50.0% | |
| GGTGGTGAAAGATCCAAGTC+CGG | - | chr1_4:49402077-49402096 | None:intergenic | 50.0% | |
| !! | AGTTGGAAGCATCCAAAGGG+AGG | - | chr1_4:49402340-49402359 | None:intergenic | 50.0% |
| ACGCCTGTAGGCATGTAGAT+TGG | - | chr1_4:49402668-49402687 | None:intergenic | 50.0% | |
| CTAATGCTCCCTGGATTGAG+AGG | - | chr1_4:49402861-49402880 | None:intergenic | 50.0% | |
| TTCTTTGCATGCCTCATGGC+AGG | + | chr1_4:49402913-49402932 | Msa0167500:CDS | 50.0% | |
| TCTTTGCATGCCTCATGGCA+GGG | + | chr1_4:49402914-49402933 | Msa0167500:CDS | 50.0% | |
| GACAAGGTGGTGTGAGGAAG+AGG | - | chr1_4:49401412-49401431 | None:intergenic | 55.0% | |
| TCGGAGGAATGACGACAAGG+TGG | - | chr1_4:49401425-49401444 | None:intergenic | 55.0% | |
| TTGCGGAAAGTGGTTGTCGG+AGG | - | chr1_4:49401441-49401460 | None:intergenic | 55.0% | |
| CGGTTGCGGAAAGTGGTTGT+CGG | - | chr1_4:49401444-49401463 | None:intergenic | 55.0% | |
| CGACAACCACTTTCCGCAAC+CGG | + | chr1_4:49401442-49401461 | Msa0167500:CDS | 55.0% | |
| AGTCAGGCGAGAACGGATGA+GGG | - | chr1_4:49401484-49401503 | None:intergenic | 55.0% | |
| TAGTCAGGCGAGAACGGATG+AGG | - | chr1_4:49401485-49401504 | None:intergenic | 55.0% | |
| GGGACATAGTCAGGCGAGAA+CGG | - | chr1_4:49401491-49401510 | None:intergenic | 55.0% | |
| AGACATCATGAGCTGCCACG+TGG | - | chr1_4:49401625-49401644 | None:intergenic | 55.0% | |
| TCGGAATTTGGAAGCGGGTC+TGG | - | chr1_4:49401682-49401701 | None:intergenic | 55.0% | |
| ACGTAGAGGTGGAGACCACT+CGG | - | chr1_4:49401720-49401739 | None:intergenic | 55.0% | |
| AGTGGTCTCCACCTCTACGT+TGG | + | chr1_4:49401720-49401739 | Msa0167500:CDS | 55.0% | |
| ! | CACGGACTATGAGAGTACGG+TGG | - | chr1_4:49401764-49401783 | None:intergenic | 55.0% |
| AGTCCGTGCACTCAAAGGCT+TGG | + | chr1_4:49401776-49401795 | Msa0167500:CDS | 55.0% | |
| ! | AGATTCCGTACCGGTGTCAG+TGG | + | chr1_4:49401800-49401819 | Msa0167500:CDS | 55.0% |
| ! | AACGAGTTGGCGATACGGGT+CGG | + | chr1_4:49401856-49401875 | Msa0167500:CDS | 55.0% |
| GATAGGGATTCCCTGCCATG+AGG | - | chr1_4:49402927-49402946 | None:intergenic | 55.0% | |
| GACAAGGTGGTGTGAGGAAG+AGG | - | chr1_4:49401412-49401431 | None:intergenic | 55.0% | |
| TCGGAGGAATGACGACAAGG+TGG | - | chr1_4:49401425-49401444 | None:intergenic | 55.0% | |
| TTGCGGAAAGTGGTTGTCGG+AGG | - | chr1_4:49401441-49401460 | None:intergenic | 55.0% | |
| CGGTTGCGGAAAGTGGTTGT+CGG | - | chr1_4:49401444-49401463 | None:intergenic | 55.0% | |
| CGACAACCACTTTCCGCAAC+CGG | + | chr1_4:49401442-49401461 | Msa0167500:CDS | 55.0% | |
| AGTCAGGCGAGAACGGATGA+GGG | - | chr1_4:49401484-49401503 | None:intergenic | 55.0% | |
| TAGTCAGGCGAGAACGGATG+AGG | - | chr1_4:49401485-49401504 | None:intergenic | 55.0% | |
| GGGACATAGTCAGGCGAGAA+CGG | - | chr1_4:49401491-49401510 | None:intergenic | 55.0% | |
| AGACATCATGAGCTGCCACG+TGG | - | chr1_4:49401625-49401644 | None:intergenic | 55.0% | |
| TCGGAATTTGGAAGCGGGTC+TGG | - | chr1_4:49401682-49401701 | None:intergenic | 55.0% | |
| ACGTAGAGGTGGAGACCACT+CGG | - | chr1_4:49401720-49401739 | None:intergenic | 55.0% | |
| AGTGGTCTCCACCTCTACGT+TGG | + | chr1_4:49401720-49401739 | Msa0167500:CDS | 55.0% | |
| ! | CACGGACTATGAGAGTACGG+TGG | - | chr1_4:49401764-49401783 | None:intergenic | 55.0% |
| AGTCCGTGCACTCAAAGGCT+TGG | + | chr1_4:49401776-49401795 | Msa0167500:CDS | 55.0% | |
| ! | AGATTCCGTACCGGTGTCAG+TGG | + | chr1_4:49401800-49401819 | Msa0167500:CDS | 55.0% |
| ! | AACGAGTTGGCGATACGGGT+CGG | + | chr1_4:49401856-49401875 | Msa0167500:CDS | 55.0% |
| GATAGGGATTCCCTGCCATG+AGG | - | chr1_4:49402927-49402946 | None:intergenic | 55.0% | |
| GAGTCTCCGGTTGCGGAAAG+TGG | - | chr1_4:49401451-49401470 | None:intergenic | 60.0% | |
| TTCCGCAACCGGAGACTCAC+CGG | + | chr1_4:49401453-49401472 | Msa0167500:CDS | 60.0% | |
| TTCCGGTGAGTCTCCGGTTG+CGG | - | chr1_4:49401458-49401477 | None:intergenic | 60.0% | |
| GGGAACTTCCGGTGAGTCTC+CGG | - | chr1_4:49401464-49401483 | None:intergenic | 60.0% | |
| GACGAGAAGACCCGGTGGAA+GGG | - | chr1_4:49401577-49401596 | None:intergenic | 60.0% | |
| TGACGAGAAGACCCGGTGGA+AGG | - | chr1_4:49401578-49401597 | None:intergenic | 60.0% | |
| ! | ACGGTGGTGACGAGAAGACC+CGG | - | chr1_4:49401585-49401604 | None:intergenic | 60.0% |
| ! | GTCTGGAATATCCGCCGGTG+GGG | - | chr1_4:49401665-49401684 | None:intergenic | 60.0% |
| ! | GGTCTGGAATATCCGCCGGT+GGG | - | chr1_4:49401666-49401685 | None:intergenic | 60.0% |
| ! | AGCGGGTCTGGAATATCCGC+CGG | - | chr1_4:49401670-49401689 | None:intergenic | 60.0% |
| TAGAGGTGGAGACCACTCGG+CGG | - | chr1_4:49401717-49401736 | None:intergenic | 60.0% | |
| ATGGCAGGCCAACGTAGAGG+TGG | - | chr1_4:49401731-49401750 | None:intergenic | 60.0% | |
| ! | ATGAGAGTACGGTGGGCCCA+CGG | - | chr1_4:49401756-49401775 | None:intergenic | 60.0% |
| CGATGCCACTGACACCGGTA+CGG | - | chr1_4:49401808-49401827 | None:intergenic | 60.0% | |
| ! | ACGAGTTGGCGATACGGGTC+GGG | + | chr1_4:49401857-49401876 | Msa0167500:CDS | 60.0% |
| GTTTGCCCGTAACCCGGACT+TGG | + | chr1_4:49402061-49402080 | Msa0167500:CDS | 60.0% | |
| GAGTCTCCGGTTGCGGAAAG+TGG | - | chr1_4:49401451-49401470 | None:intergenic | 60.0% | |
| TTCCGCAACCGGAGACTCAC+CGG | + | chr1_4:49401453-49401472 | Msa0167500:CDS | 60.0% | |
| TTCCGGTGAGTCTCCGGTTG+CGG | - | chr1_4:49401458-49401477 | None:intergenic | 60.0% | |
| GGGAACTTCCGGTGAGTCTC+CGG | - | chr1_4:49401464-49401483 | None:intergenic | 60.0% | |
| GACGAGAAGACCCGGTGGAA+GGG | - | chr1_4:49401577-49401596 | None:intergenic | 60.0% | |
| TGACGAGAAGACCCGGTGGA+AGG | - | chr1_4:49401578-49401597 | None:intergenic | 60.0% | |
| ! | ACGGTGGTGACGAGAAGACC+CGG | - | chr1_4:49401585-49401604 | None:intergenic | 60.0% |
| ! | GTCTGGAATATCCGCCGGTG+GGG | - | chr1_4:49401665-49401684 | None:intergenic | 60.0% |
| ! | GGTCTGGAATATCCGCCGGT+GGG | - | chr1_4:49401666-49401685 | None:intergenic | 60.0% |
| ! | AGCGGGTCTGGAATATCCGC+CGG | - | chr1_4:49401670-49401689 | None:intergenic | 60.0% |
| TAGAGGTGGAGACCACTCGG+CGG | - | chr1_4:49401717-49401736 | None:intergenic | 60.0% | |
| ATGGCAGGCCAACGTAGAGG+TGG | - | chr1_4:49401731-49401750 | None:intergenic | 60.0% | |
| ! | ATGAGAGTACGGTGGGCCCA+CGG | - | chr1_4:49401756-49401775 | None:intergenic | 60.0% |
| CGATGCCACTGACACCGGTA+CGG | - | chr1_4:49401808-49401827 | None:intergenic | 60.0% | |
| ! | ACGAGTTGGCGATACGGGTC+GGG | + | chr1_4:49401857-49401876 | Msa0167500:CDS | 60.0% |
| GTTTGCCCGTAACCCGGACT+TGG | + | chr1_4:49402061-49402080 | Msa0167500:CDS | 60.0% | |
| GAAGACCCGGTGGAAGGGAC+CGG | - | chr1_4:49401572-49401591 | None:intergenic | 65.0% | |
| ! | GTGGTGACGAGAAGACCCGG+TGG | - | chr1_4:49401582-49401601 | None:intergenic | 65.0% |
| ACGTGGAGTTCCAGGCGGTG+CGG | - | chr1_4:49401608-49401627 | None:intergenic | 65.0% | |
| CTGCCACGTGGAGTTCCAGG+CGG | - | chr1_4:49401613-49401632 | None:intergenic | 65.0% | |
| GAGCTGCCACGTGGAGTTCC+AGG | - | chr1_4:49401616-49401635 | None:intergenic | 65.0% | |
| GGAATATCCGCCGGTGGGGT+CGG | - | chr1_4:49401661-49401680 | None:intergenic | 65.0% | |
| ! | GGGTCTGGAATATCCGCCGG+TGG | - | chr1_4:49401667-49401686 | None:intergenic | 65.0% |
| TCGGCGGTGGACCGGAGAAT+CGG | - | chr1_4:49401701-49401720 | None:intergenic | 65.0% | |
| GGCATGGCAGGCCAACGTAG+AGG | - | chr1_4:49401734-49401753 | None:intergenic | 65.0% | |
| ! | TGAGAGTACGGTGGGCCCAC+GGG | - | chr1_4:49401755-49401774 | None:intergenic | 65.0% |
| ! | ACCGGTGTCAGTGGCATCGC+CGG | + | chr1_4:49401809-49401828 | Msa0167500:CDS | 65.0% |
| GTCAGTGGCATCGCCGGGAA+TGG | + | chr1_4:49401815-49401834 | Msa0167500:CDS | 65.0% | |
| GTGGCATCGCCGGGAATGGA+CGG | + | chr1_4:49401819-49401838 | Msa0167500:CDS | 65.0% | |
| TGGCATCGCCGGGAATGGAC+GGG | + | chr1_4:49401820-49401839 | Msa0167500:CDS | 65.0% | |
| TCCCACGACCCGTCCATTCC+CGG | - | chr1_4:49401831-49401850 | None:intergenic | 65.0% | |
| GAAGACCCGGTGGAAGGGAC+CGG | - | chr1_4:49401572-49401591 | None:intergenic | 65.0% | |
| ! | GTGGTGACGAGAAGACCCGG+TGG | - | chr1_4:49401582-49401601 | None:intergenic | 65.0% |
| ACGTGGAGTTCCAGGCGGTG+CGG | - | chr1_4:49401608-49401627 | None:intergenic | 65.0% | |
| CTGCCACGTGGAGTTCCAGG+CGG | - | chr1_4:49401613-49401632 | None:intergenic | 65.0% | |
| GAGCTGCCACGTGGAGTTCC+AGG | - | chr1_4:49401616-49401635 | None:intergenic | 65.0% | |
| GGAATATCCGCCGGTGGGGT+CGG | - | chr1_4:49401661-49401680 | None:intergenic | 65.0% | |
| ! | GGGTCTGGAATATCCGCCGG+TGG | - | chr1_4:49401667-49401686 | None:intergenic | 65.0% |
| TCGGCGGTGGACCGGAGAAT+CGG | - | chr1_4:49401701-49401720 | None:intergenic | 65.0% | |
| GGCATGGCAGGCCAACGTAG+AGG | - | chr1_4:49401734-49401753 | None:intergenic | 65.0% | |
| ! | TGAGAGTACGGTGGGCCCAC+GGG | - | chr1_4:49401755-49401774 | None:intergenic | 65.0% |
| ! | ACCGGTGTCAGTGGCATCGC+CGG | + | chr1_4:49401809-49401828 | Msa0167500:CDS | 65.0% |
| GTCAGTGGCATCGCCGGGAA+TGG | + | chr1_4:49401815-49401834 | Msa0167500:CDS | 65.0% | |
| GTGGCATCGCCGGGAATGGA+CGG | + | chr1_4:49401819-49401838 | Msa0167500:CDS | 65.0% | |
| TGGCATCGCCGGGAATGGAC+GGG | + | chr1_4:49401820-49401839 | Msa0167500:CDS | 65.0% | |
| TCCCACGACCCGTCCATTCC+CGG | - | chr1_4:49401831-49401850 | None:intergenic | 65.0% | |
| GGAGTTCCAGGCGGTGCGGA+CGG | - | chr1_4:49401604-49401623 | None:intergenic | 70.0% | |
| GCACCGCCTGGAACTCCACG+TGG | + | chr1_4:49401607-49401626 | Msa0167500:CDS | 70.0% | |
| TATCCGCCGGTGGGGTCGGA+GGG | - | chr1_4:49401657-49401676 | None:intergenic | 70.0% | |
| ATATCCGCCGGTGGGGTCGG+AGG | - | chr1_4:49401658-49401677 | None:intergenic | 70.0% | |
| TTCTCCGGTCCACCGCCGAG+TGG | + | chr1_4:49401702-49401721 | Msa0167500:CDS | 70.0% | |
| GAGACCACTCGGCGGTGGAC+CGG | - | chr1_4:49401709-49401728 | None:intergenic | 70.0% | |
| AGGTGGAGACCACTCGGCGG+TGG | - | chr1_4:49401714-49401733 | None:intergenic | 70.0% | |
| ! | ACGTTGGCCTGCCATGCCCG+TGG | + | chr1_4:49401736-49401755 | Msa0167500:CDS | 70.0% |
| ! | CGTTGGCCTGCCATGCCCGT+GGG | + | chr1_4:49401737-49401756 | Msa0167500:CDS | 70.0% |
| CCCGGCGATGCCACTGACAC+CGG | - | chr1_4:49401813-49401832 | None:intergenic | 70.0% | |
| ! | CCGGTGTCAGTGGCATCGCC+GGG | + | chr1_4:49401810-49401829 | Msa0167500:CDS | 70.0% |
| GCCGGGAATGGACGGGTCGT+GGG | + | chr1_4:49401827-49401846 | Msa0167500:CDS | 70.0% | |
| GGAGTTCCAGGCGGTGCGGA+CGG | - | chr1_4:49401604-49401623 | None:intergenic | 70.0% | |
| GCACCGCCTGGAACTCCACG+TGG | + | chr1_4:49401607-49401626 | Msa0167500:CDS | 70.0% | |
| TATCCGCCGGTGGGGTCGGA+GGG | - | chr1_4:49401657-49401676 | None:intergenic | 70.0% | |
| ATATCCGCCGGTGGGGTCGG+AGG | - | chr1_4:49401658-49401677 | None:intergenic | 70.0% | |
| TTCTCCGGTCCACCGCCGAG+TGG | + | chr1_4:49401702-49401721 | Msa0167500:CDS | 70.0% | |
| GAGACCACTCGGCGGTGGAC+CGG | - | chr1_4:49401709-49401728 | None:intergenic | 70.0% | |
| AGGTGGAGACCACTCGGCGG+TGG | - | chr1_4:49401714-49401733 | None:intergenic | 70.0% | |
| ! | ACGTTGGCCTGCCATGCCCG+TGG | + | chr1_4:49401736-49401755 | Msa0167500:CDS | 70.0% |
| ! | CGTTGGCCTGCCATGCCCGT+GGG | + | chr1_4:49401737-49401756 | Msa0167500:CDS | 70.0% |
| CCCGGCGATGCCACTGACAC+CGG | - | chr1_4:49401813-49401832 | None:intergenic | 70.0% | |
| ! | CCGGTGTCAGTGGCATCGCC+GGG | + | chr1_4:49401810-49401829 | Msa0167500:CDS | 70.0% |
| GCCGGGAATGGACGGGTCGT+GGG | + | chr1_4:49401827-49401846 | Msa0167500:CDS | 70.0% | |
| CTGGGGCCGGTCCCTTCCAC+CGG | + | chr1_4:49401563-49401582 | Msa0167500:CDS | 75.0% | |
| TGGGGCCGGTCCCTTCCACC+GGG | + | chr1_4:49401564-49401583 | Msa0167500:CDS | 75.0% | |
| TCACCACCGTCCGCACCGCC+TGG | + | chr1_4:49401595-49401614 | Msa0167500:CDS | 75.0% | |
| GTTCCAGGCGGTGCGGACGG+TGG | - | chr1_4:49401601-49401620 | None:intergenic | 75.0% | |
| CTCGCTCCCTCCGACCCCAC+CGG | + | chr1_4:49401648-49401667 | Msa0167500:CDS | 75.0% | |
| GTACGGTGGGCCCACGGGCA+TGG | - | chr1_4:49401750-49401769 | None:intergenic | 75.0% | |
| CGCCGGGAATGGACGGGTCG+TGG | + | chr1_4:49401826-49401845 | Msa0167500:CDS | 75.0% | |
| CTGGGGCCGGTCCCTTCCAC+CGG | + | chr1_4:49401563-49401582 | Msa0167500:CDS | 75.0% | |
| TGGGGCCGGTCCCTTCCACC+GGG | + | chr1_4:49401564-49401583 | Msa0167500:CDS | 75.0% | |
| TCACCACCGTCCGCACCGCC+TGG | + | chr1_4:49401595-49401614 | Msa0167500:CDS | 75.0% | |
| GTTCCAGGCGGTGCGGACGG+TGG | - | chr1_4:49401601-49401620 | None:intergenic | 75.0% | |
| CTCGCTCCCTCCGACCCCAC+CGG | + | chr1_4:49401648-49401667 | Msa0167500:CDS | 75.0% | |
| GTACGGTGGGCCCACGGGCA+TGG | - | chr1_4:49401750-49401769 | None:intergenic | 75.0% | |
| CGCCGGGAATGGACGGGTCG+TGG | + | chr1_4:49401826-49401845 | Msa0167500:CDS | 75.0% | |
| ! | GCTCCCTCCGACCCCACCGG+CGG | + | chr1_4:49401651-49401670 | Msa0167500:CDS | 80.0% |
| ! | GGTGGGCCCACGGGCATGGC+AGG | - | chr1_4:49401746-49401765 | None:intergenic | 80.0% |
| ! | GCTCCCTCCGACCCCACCGG+CGG | + | chr1_4:49401651-49401670 | Msa0167500:CDS | 80.0% |
| ! | GGTGGGCCCACGGGCATGGC+AGG | - | chr1_4:49401746-49401765 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 49401356 | 49403200 | 49401356 | ID=Msa0167500;Name=Msa0167500 |
| chr1_4 | mRNA | 49401356 | 49403200 | 49401356 | ID=Msa0167500-mRNA-1;Parent=Msa0167500;Name=Msa0167500-mRNA-1;_AED=0.09;_eAED=0.09;_QI=19|1|1|1|1|1|3|223|408 |
| chr1_4 | exon | 49401356 | 49402165 | 49401356 | ID=Msa0167500-mRNA-1:exon:14518;Parent=Msa0167500-mRNA-1 |
| chr1_4 | exon | 49402450 | 49402699 | 49402450 | ID=Msa0167500-mRNA-1:exon:14519;Parent=Msa0167500-mRNA-1 |
| chr1_4 | exon | 49402792 | 49403200 | 49402792 | ID=Msa0167500-mRNA-1:exon:14520;Parent=Msa0167500-mRNA-1 |
| chr1_4 | five_prime_UTR | 49401356 | 49401374 | 49401356 | ID=Msa0167500-mRNA-1:five_prime_utr;Parent=Msa0167500-mRNA-1 |
| chr1_4 | CDS | 49401375 | 49402165 | 49401375 | ID=Msa0167500-mRNA-1:cds;Parent=Msa0167500-mRNA-1 |
| chr1_4 | CDS | 49402450 | 49402699 | 49402450 | ID=Msa0167500-mRNA-1:cds;Parent=Msa0167500-mRNA-1 |
| chr1_4 | CDS | 49402792 | 49402977 | 49402792 | ID=Msa0167500-mRNA-1:cds;Parent=Msa0167500-mRNA-1 |
| chr1_4 | three_prime_UTR | 49402978 | 49403200 | 49402978 | ID=Msa0167500-mRNA-1:three_prime_utr;Parent=Msa0167500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
