AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386420 MtrunA17_Chr3g0144321 93.333 105 2 2 1 105 1 100 1.50e-65 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386420 AT2G33585.1 66.327 98 31 1 1 98 98 193 1.13e-45 145
Msa0386420 AT2G33585.2 74.545 55 14 0 1 55 98 152 4.01e-28 100

Find 48 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACAAAGACAAATCATTT+AGG 0.215755 3_1:+90167406 Msa0386420:CDS
CAGGTTACTGGTTTGATATA+TGG 0.242969 3_1:+90167363 Msa0386420:intron
GAACCCTAGCTTATTATCTT+TGG 0.258975 3_1:+90167142 Msa0386420:CDS
AAAATACTGTATTACTATTA+AGG 0.261649 3_1:+90171493 Msa0386420:three_prime_UTR
GAGGAAGCAACCTCGCTTCT+TGG 0.300549 3_1:+90167109 Msa0386420:CDS
CTTCTTCAATGGCGAGTAAC+TGG 0.306432 3_1:+90167028 Msa0386420:exon
CAACAAAGACAAATCATTTA+GGG 0.367523 3_1:+90167407 Msa0386420:CDS
GTTCTTGGCAGGAATCAAAA+TGG 0.377515 3_1:+90171389 Msa0386420:intron
AGGAAGCAACCTCGCTTCTT+GGG 0.395335 3_1:+90167110 Msa0386420:CDS
TCAAAATGGAAACAATCAAC+AGG 0.395695 3_1:+90171403 Msa0386420:three_prime_UTR
ACGATTGAAGACTCAAACTC+TGG 0.451999 3_1:-90166981 None:intergenic
GAGGAACGAACTTGAGGATC+AGG 0.455383 3_1:-90167267 None:intergenic
AATTACACTATAACATTTGA+AGG 0.455809 3_1:-90171564 None:intergenic
TAAGTAATAGTGGATTATAA+TGG 0.457737 3_1:-90171663 None:intergenic
TGTTTGACAGTATGTGTGTA+AGG 0.461973 3_1:-90166950 None:intergenic
CGAACTTGAGGATCAGGAAC+AGG 0.471583 3_1:-90167261 None:intergenic
CGAGTTTCAACATAGCGAAA+AGG 0.472893 3_1:-90167234 None:intergenic
TTAACGAAACGAAAGGGTCT+CGG 0.475501 3_1:+90166907 Msa0386420:five_prime_UTR
CTCGCTTCTTGGGTTGTCGC+CGG 0.477421 3_1:+90167120 Msa0386420:CDS
TTGGTAACAACCCATCCTTC+AGG 0.480089 3_1:+90171609 Msa0386420:three_prime_UTR
TGATCCAAAGATAATAAGCT+AGG 0.483025 3_1:-90167146 None:intergenic
ATAACATATTTCCTGAAGGA+TGG 0.485565 3_1:-90171620 None:intergenic
CACTATAACATTTGAAGGGA+GGG 0.490517 3_1:-90171559 None:intergenic
AAGATAATAAGCTAGGGTTC+CGG 0.497881 3_1:-90167139 None:intergenic
TATACTATACTCTTCTTCAA+TGG 0.500067 3_1:+90167017 Msa0386420:exon
TAACATATTTCCTGAAGGAT+GGG 0.506004 3_1:-90171619 None:intergenic
TCGCGTTTGAGATCTTGATC+AGG 0.521692 3_1:-90167171 None:intergenic
ATTAATAACATATTTCCTGA+AGG 0.532087 3_1:-90171624 None:intergenic
TGTTGTTTAACGAAACGAAA+GGG 0.534783 3_1:+90166901 Msa0386420:five_prime_UTR
GTCGTTCGTGAACAATTCGA+TGG 0.543665 3_1:+90167074 Msa0386420:CDS
AAATTAGGGTGTGCCACACA+AGG 0.563596 3_1:-90166855 None:intergenic
TAATAGTGGATTATAATGGC+AGG 0.575861 3_1:-90171659 None:intergenic
GATCCAAAGATAATAAGCTA+GGG 0.581242 3_1:-90167145 None:intergenic
TTCGTGAACAATTCGATGGG+TGG 0.584430 3_1:+90167078 Msa0386420:CDS
GAAGAACACTCGGCAACGCA+AGG 0.595860 3_1:+90167052 Msa0386420:CDS
TTGACACATTTACCCTTGTG+TGG 0.600283 3_1:+90166842 None:intergenic
ATTACACTATAACATTTGAA+GGG 0.606449 3_1:-90171563 None:intergenic
TCGTTCGTGAACAATTCGAT+GGG 0.609126 3_1:+90167075 Msa0386420:CDS
AATTCGATGGGTGGTCTGAG+AGG 0.619195 3_1:+90167087 Msa0386420:CDS
TCGATGGGTGGTCTGAGAGG+AGG 0.620565 3_1:+90167090 Msa0386420:CDS
ACACTATAACATTTGAAGGG+AGG 0.623920 3_1:-90171560 None:intergenic
TTGTTGTTTAACGAAACGAA+AGG 0.637209 3_1:+90166900 Msa0386420:five_prime_UTR
CGGCGACAACCCAAGAAGCG+AGG 0.662090 3_1:-90167119 None:intergenic
AATTAGGGTGTGCCACACAA+GGG 0.665578 3_1:-90166854 None:intergenic
GTTTGACAGTATGTGTGTAA+GGG 0.666503 3_1:-90166949 None:intergenic
ATAGCGAAAAGGATCATCAG+AGG 0.666816 3_1:-90167223 None:intergenic
CAAAATGGAAACAATCAACA+GGG 0.671176 3_1:+90171404 Msa0386420:three_prime_UTR
AGTAACTGGAGAAGAACACT+CGG 0.697006 3_1:+90167042 Msa0386420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAAATATATTTTAATA+TGG - chr3_1:90168477-90168496 None:intergenic 0.0%
!!! TAATTTTCAATTTTAATTTC+AGG + chr3_1:90167344-90167363 Msa0386420:intron 10.0%
!! AAATTACTTTATATATTGTA+CGG + chr3_1:90167659-90167678 Msa0386420:intron 10.0%
!!! ATATCTTACATTTTAAAAAT+AGG - chr3_1:90167732-90167751 None:intergenic 10.0%
!! ATAAGTCAAATATTAAATAA+TGG + chr3_1:90168071-90168090 Msa0386420:intron 10.0%
!!! CATATTTTCAATAAATTAAT+GGG - chr3_1:90168559-90168578 None:intergenic 10.0%
!!! ACATATTTTCAATAAATTAA+TGG - chr3_1:90168560-90168579 None:intergenic 10.0%
!!! AATTCATTTTTAAATTTGTT+TGG - chr3_1:90170779-90170798 None:intergenic 10.0%
!! TAATAATAGAGAAAAAGAAA+AGG - chr3_1:90167316-90167335 None:intergenic 15.0%
!! ATAGATATTAACACAATATT+AGG + chr3_1:90170681-90170700 Msa0386420:intron 15.0%
!!! CCACTTTTATATTTAAAAAA+TGG - chr3_1:90170969-90170988 None:intergenic 15.0%
!!! CCATTTTTTAAATATAAAAG+TGG + chr3_1:90170966-90170985 Msa0386420:intron 15.0%
!! TACAAGAAAAATAAACATAT+TGG - chr3_1:90171279-90171298 None:intergenic 15.0%
!!! ATGTTTATTTTTCTTGTATT+TGG + chr3_1:90171281-90171300 Msa0386420:intron 15.0%
!!! TGTTTATTTTTCTTGTATTT+GGG + chr3_1:90171282-90171301 Msa0386420:intron 15.0%
!!! TTATATTATTTTTGGATACA+GGG + chr3_1:90171431-90171450 Msa0386420:three_prime_UTR 15.0%
!! AAAATACTGTATTACTATTA+AGG + chr3_1:90171493-90171512 Msa0386420:three_prime_UTR 15.0%
!! TTAGGGAAAAATATATTCAT+GGG - chr3_1:90168513-90168532 None:intergenic 20.0%
!! ATTAGGGAAAAATATATTCA+TGG - chr3_1:90168514-90168533 None:intergenic 20.0%
!!! AAGTTGATTTTAAAGTGAAA+GGG + chr3_1:90168654-90168673 Msa0386420:intron 20.0%
!!! GTTTAAAAAAATAGGGTTTT+CGG + chr3_1:90168947-90168966 Msa0386420:intron 20.0%
!! ATATTCATTGCATGTTTAAA+AGG - chr3_1:90169270-90169289 None:intergenic 20.0%
!! AATTAACCTCTATATAACAT+AGG + chr3_1:90169774-90169793 Msa0386420:intron 20.0%
!!! GTGAACGTTTTTTTTTTTAA+TGG - chr3_1:90170052-90170071 Msa0386440:intron 20.0%
!! TAAAAAAAAAAACGTTCACT+TGG + chr3_1:90170053-90170072 Msa0386420:intron 20.0%
!!! TTTTAAATATAAAAGTGGCT+TGG + chr3_1:90170971-90170990 Msa0386420:intron 20.0%
!!! CGTTGTTTTTAATATAAAAG+TGG + chr3_1:90171102-90171121 Msa0386420:intron 20.0%
!!! TTTTTAATATAAAAGTGGCT+CGG + chr3_1:90171107-90171126 Msa0386420:intron 20.0%
!!! CTTATATTATTTTTGGATAC+AGG + chr3_1:90171430-90171449 Msa0386420:three_prime_UTR 20.0%
!! ATTACACTATAACATTTGAA+GGG - chr3_1:90171566-90171585 None:intergenic 20.0%
!! AATTACACTATAACATTTGA+AGG - chr3_1:90171567-90171586 None:intergenic 20.0%
!! ATTAATAACATATTTCCTGA+AGG - chr3_1:90171627-90171646 None:intergenic 20.0%
! GCACACAAGTAAAAAAATTA+GGG - chr3_1:90166872-90166891 None:intergenic 25.0%
! AGCACACAAGTAAAAAAATT+AGG - chr3_1:90166873-90166892 None:intergenic 25.0%
!!! AATTTTTTTACTTGTGTGCT+AGG + chr3_1:90166873-90166892 Msa0386420:five_prime_UTR 25.0%
! TATACTATACTCTTCTTCAA+TGG + chr3_1:90167017-90167036 Msa0386420:exon 25.0%
!!! CAATTTTAATTTCAGGTTAC+TGG + chr3_1:90167351-90167370 Msa0386420:intron 25.0%
! ACAACAAAGACAAATCATTT+AGG + chr3_1:90167406-90167425 Msa0386420:CDS 25.0%
! CAACAAAGACAAATCATTTA+GGG + chr3_1:90167407-90167426 Msa0386420:CDS 25.0%
!!! TCAAGTTGGTGAAATAATAA+CGG - chr3_1:90167531-90167550 None:intergenic 25.0%
! GCAAAATAGTGAAATTTGAT+CGG + chr3_1:90167593-90167612 Msa0386420:intron 25.0%
! CAAAATAGTGAAATTTGATC+GGG + chr3_1:90167594-90167613 Msa0386420:intron 25.0%
! AAAATAGTGAAATTTGATCG+GGG + chr3_1:90167595-90167614 Msa0386420:intron 25.0%
! GTAAACCTAATTTACATTGT+TGG + chr3_1:90167624-90167643 Msa0386420:intron 25.0%
! ATACACCAACAATGTAAATT+AGG - chr3_1:90167632-90167651 None:intergenic 25.0%
! ATGTAAGATATTATAGACCT+AGG + chr3_1:90167741-90167760 Msa0386420:intron 25.0%
! TGTTATAATCACAAGTGTTT+AGG - chr3_1:90168005-90168024 None:intergenic 25.0%
! CTTTCCTAACTAATATGTAA+AGG - chr3_1:90168112-90168131 None:intergenic 25.0%
! TATTAGTTAGGAAAGCAAAA+CGG + chr3_1:90168117-90168136 Msa0386420:intron 25.0%
! ATAATCACAAGCAATTTAGT+CGG - chr3_1:90168420-90168439 None:intergenic 25.0%
! TATTCAAAAGATCAAAGAAG+TGG + chr3_1:90168595-90168614 Msa0386420:intron 25.0%
!!! GAAGTTGATTTTAAAGTGAA+AGG + chr3_1:90168653-90168672 Msa0386420:intron 25.0%
!!! AGTTGATTTTAAAGTGAAAG+GGG + chr3_1:90168655-90168674 Msa0386420:intron 25.0%
! CTTTACTAGCTAATATGTAA+AGG - chr3_1:90168878-90168897 None:intergenic 25.0%
! TATTAGCTAGTAAAGCAAAA+CGG + chr3_1:90168883-90168902 Msa0386420:intron 25.0%
! GGAACGTGTTTAAAAAAATA+GGG + chr3_1:90168940-90168959 Msa0386420:intron 25.0%
!!! AATAAATTAAAGGTATTCCG+CGG - chr3_1:90169319-90169338 None:intergenic 25.0%
! ATAGAGGTTAATTATAACCT+TGG - chr3_1:90169767-90169786 None:intergenic 25.0%
!! TGATTGTGAACATAAGATTT+TGG + chr3_1:90169868-90169887 Msa0386420:intron 25.0%
!! ATTCAACACTAATTGTTTCT+GGG + chr3_1:90169955-90169974 Msa0386420:intron 25.0%
! ATTTCCAATATCAGGATTAT+GGG - chr3_1:90170011-90170030 Msa0386440:intron 25.0%
!! ATCATTTGATTTCCAATATC+AGG - chr3_1:90170019-90170038 Msa0386440:intron 25.0%
!!! TTGGTCTCTTTTGTTTAATT+GGG + chr3_1:90170072-90170091 Msa0386420:intron 25.0%
! ATTGAAGTTGAATTCATCAT+CGG - chr3_1:90170235-90170254 Msa0386440:CDS 25.0%
!!! AACTTCAATTTTGCTTTGAA+TGG + chr3_1:90170246-90170265 Msa0386420:intron 25.0%
!!! ACTTCAATTTTGCTTTGAAT+GGG + chr3_1:90170247-90170266 Msa0386420:intron 25.0%
!! AACAAGTTCTTCTAAAAGAA+AGG + chr3_1:90170737-90170756 Msa0386420:intron 25.0%
! GGTATAATTCTAATACAGAT+AGG - chr3_1:90170948-90170967 None:intergenic 25.0%
! GATACTTTATCGATATGTAT+AGG + chr3_1:90171129-90171148 Msa0386420:intron 25.0%
! TTTGTGATTGCTTGATTATT+TGG + chr3_1:90171305-90171324 Msa0386420:intron 25.0%
! TTGTGATTGCTTGATTATTT+GGG + chr3_1:90171306-90171325 Msa0386420:intron 25.0%
!! TTTTAATGCTCTGATATTAG+AGG + chr3_1:90171329-90171348 Msa0386420:intron 25.0%
!! TTCATTTATGATGATGTTCT+TGG + chr3_1:90171374-90171393 Msa0386420:intron 25.0%
!! AGGGAGACTTATATTATTTT+TGG + chr3_1:90171423-90171442 Msa0386420:three_prime_UTR 25.0%
!! TTGTTGTTTAACGAAACGAA+AGG + chr3_1:90166900-90166919 Msa0386420:five_prime_UTR 30.0%
! TGTTGTTTAACGAAACGAAA+GGG + chr3_1:90166901-90166920 Msa0386420:five_prime_UTR 30.0%
GATCCAAAGATAATAAGCTA+GGG - chr3_1:90167148-90167167 None:intergenic 30.0%
TGATCCAAAGATAATAAGCT+AGG - chr3_1:90167149-90167168 None:intergenic 30.0%
AAAAGAAAAGGAAGTGAAAG+TGG - chr3_1:90167304-90167323 None:intergenic 30.0%
ACATGATTAAGTAATTAGGC+AGG - chr3_1:90167455-90167474 None:intergenic 30.0%
CAGCACATGATTAAGTAATT+AGG - chr3_1:90167459-90167478 None:intergenic 30.0%
TTAATTACAACGTGTCAAGT+TGG - chr3_1:90167545-90167564 None:intergenic 30.0%
AAATAGTGAAATTTGATCGG+GGG + chr3_1:90167596-90167615 Msa0386420:intron 30.0%
GTGTTTGGATATGCATAAAA+AGG + chr3_1:90167767-90167786 Msa0386420:intron 30.0%
! TTGAGTATCACAAATTTGCT+TGG + chr3_1:90167794-90167813 Msa0386420:intron 30.0%
GCAACAAACATAATTGTTAG+AGG + chr3_1:90167924-90167943 Msa0386420:intron 30.0%
! CTTATTGAAACACACTGTTT+TGG - chr3_1:90168056-90168075 None:intergenic 30.0%
CAGTCCTTTACATATTAGTT+AGG + chr3_1:90168105-90168124 Msa0386420:intron 30.0%
TAATCACAAGCAATTTAGTC+GGG - chr3_1:90168419-90168438 None:intergenic 30.0%
ATATTCATGGGACGTTTAAA+AGG - chr3_1:90168501-90168520 None:intergenic 30.0%
!! CGACATTTTGACATTGATTA+GGG - chr3_1:90168530-90168549 None:intergenic 30.0%
GTCGTTGTTTATTATTTGAC+TGG - chr3_1:90168841-90168860 None:intergenic 30.0%
CGGAACGTGTTTAAAAAAAT+AGG + chr3_1:90168939-90168958 Msa0386420:intron 30.0%
! AATCCTCTTTGCAAAGTTTT+TGG + chr3_1:90169394-90169413 Msa0386420:intron 30.0%
! ATCCTCTTTGCAAAGTTTTT+GGG + chr3_1:90169395-90169414 Msa0386420:intron 30.0%
GAATTAGGTTTGAGTAATGA+TGG - chr3_1:90169703-90169722 Msa0386430:CDS 30.0%
ATGCGAACTAATGAAGAATT+AGG - chr3_1:90169718-90169737 Msa0386430:CDS 30.0%
ATCTTGCTCTATAACTAGTT+CGG + chr3_1:90169837-90169856 Msa0386420:intron 30.0%
GACTGAATTTCAATACGAAT+TGG + chr3_1:90169932-90169951 Msa0386420:intron 30.0%
GATTCAACACTAATTGTTTC+TGG + chr3_1:90169954-90169973 Msa0386420:intron 30.0%
!! TTCAACACTAATTGTTTCTG+GGG + chr3_1:90169956-90169975 Msa0386420:intron 30.0%
GATTTCCAATATCAGGATTA+TGG - chr3_1:90170012-90170031 Msa0386440:intron 30.0%
TGGAAATCAAATGATTGACT+TGG + chr3_1:90170024-90170043 Msa0386420:intron 30.0%
!! CTTGGTCTCTTTTGTTTAAT+TGG + chr3_1:90170071-90170090 Msa0386420:intron 30.0%
TTGAAGTTGAATTCATCATC+GGG - chr3_1:90170234-90170253 Msa0386440:CDS 30.0%
!!! TTTACAGCCATTTTTTGGTT+CGG - chr3_1:90170282-90170301 Msa0386440:intron 30.0%
!!! CATGTTTTACAGCCATTTTT+TGG - chr3_1:90170287-90170306 Msa0386440:intron 30.0%
!! CTTTTAGAAGAACTTGTTCA+AGG - chr3_1:90170735-90170754 None:intergenic 30.0%
!!! AAGAATCACGAGTTTTTTTC+TGG + chr3_1:90170834-90170853 Msa0386420:intron 30.0%
TTGCATGTATGAATACTTCA+TGG + chr3_1:90171074-90171093 Msa0386420:intron 30.0%
! GGTGAAGTATCAAAGAATAT+TGG + chr3_1:90171150-90171169 Msa0386420:intron 30.0%
AAAGAATATTGGTACCGTAT+TGG + chr3_1:90171161-90171180 Msa0386420:intron 30.0%
TAAAGGACACATATCCAATA+CGG - chr3_1:90171178-90171197 None:intergenic 30.0%
TATTGGATATGTGTCCTTTA+TGG + chr3_1:90171178-90171197 Msa0386420:intron 30.0%
ATATATGAATGCATGCTTCA+TGG + chr3_1:90171218-90171237 Msa0386420:intron 30.0%
ATATATGAATGCATGCTTCA+TGG + chr3_1:90171218-90171237 Msa0386420:intron 30.0%
TCAAAATGGAAACAATCAAC+AGG + chr3_1:90171403-90171422 Msa0386420:three_prime_UTR 30.0%
CAAAATGGAAACAATCAACA+GGG + chr3_1:90171404-90171423 Msa0386420:three_prime_UTR 30.0%
!!! AGTATTTTGATTCCTGCTAA+GGG - chr3_1:90171481-90171500 None:intergenic 30.0%
TAACATATTTCCTGAAGGAT+GGG - chr3_1:90171622-90171641 None:intergenic 30.0%
ATAACATATTTCCTGAAGGA+TGG - chr3_1:90171623-90171642 None:intergenic 30.0%
!!! TTTTTTACTTGTGTGCTAGG+AGG + chr3_1:90166876-90166895 Msa0386420:five_prime_UTR 35.0%
GTTTGACAGTATGTGTGTAA+GGG - chr3_1:90166952-90166971 None:intergenic 35.0%
TGTTTGACAGTATGTGTGTA+AGG - chr3_1:90166953-90166972 None:intergenic 35.0%
AAGATAATAAGCTAGGGTTC+CGG - chr3_1:90167142-90167161 None:intergenic 35.0%
GAACCCTAGCTTATTATCTT+TGG + chr3_1:90167142-90167161 Msa0386420:CDS 35.0%
GAAAGTGGTAAGTAAGAAAG+AGG - chr3_1:90167289-90167308 None:intergenic 35.0%
!! CAGGTTACTGGTTTGATATA+TGG + chr3_1:90167363-90167382 Msa0386420:intron 35.0%
CGGTGTACAATCATTATACT+CGG - chr3_1:90167493-90167512 None:intergenic 35.0%
! AACGGAGGTATATACATTGT+CGG - chr3_1:90167513-90167532 None:intergenic 35.0%
!! AGTTGGTGAAATAATAACGG+AGG - chr3_1:90167528-90167547 None:intergenic 35.0%
CTAGAAGTAATACTATGTCG+TGG + chr3_1:90167571-90167590 Msa0386420:intron 35.0%
TATAGACCTAGGATTGTGTT+TGG + chr3_1:90167752-90167771 Msa0386420:intron 35.0%
TTCGTTGTAAAACTAGAGCA+TGG + chr3_1:90167836-90167855 Msa0386420:intron 35.0%
! GTAAAACTAGAGCATGGTTT+TGG + chr3_1:90167842-90167861 Msa0386420:intron 35.0%
CAAGTGTTTAGGCTTCATTT+AGG - chr3_1:90167994-90168013 None:intergenic 35.0%
!!! AACACACTGTTTTGGAAAGA+CGG - chr3_1:90168048-90168067 None:intergenic 35.0%
TCCGCGTGTTTAAAAATGAT+AGG + chr3_1:90168176-90168195 Msa0386420:intron 35.0%
!! CCCTATCATTTTTAAACACG+CGG - chr3_1:90168180-90168199 None:intergenic 35.0%
CCGCGTGTTTAAAAATGATA+GGG + chr3_1:90168177-90168196 Msa0386420:intron 35.0%
! CAAGATTACGATTTCTGAGA+AGG - chr3_1:90168299-90168318 None:intergenic 35.0%
!! GCGACATTTTGACATTGATT+AGG - chr3_1:90168531-90168550 None:intergenic 35.0%
! AGATCAAAGAAGTGGTTCTA+TGG + chr3_1:90168603-90168622 Msa0386420:intron 35.0%
!!! TTTTAAAGTGAAAGGGGTAG+AGG + chr3_1:90168661-90168680 Msa0386420:intron 35.0%
! TTTAAAGTGAAAGGGGTAGA+GGG + chr3_1:90168662-90168681 Msa0386420:intron 35.0%
!! TTGAAACACACTGTTTTGGA+AGG - chr3_1:90168052-90168071 None:intergenic 35.0%
TGAATCACAACACAATTCCA+TGG + chr3_1:90169111-90169130 Msa0386420:intron 35.0%
GAATCACAACACAATTCCAT+GGG + chr3_1:90169112-90169131 Msa0386420:intron 35.0%
AATCACAACACAATTCCATG+GGG + chr3_1:90169113-90169132 Msa0386420:intron 35.0%
TAATCACAAGCAATGTAGTC+AGG - chr3_1:90169189-90169208 None:intergenic 35.0%
ATAAGAGAAAGACATGTCTC+TGG - chr3_1:90169222-90169241 None:intergenic 35.0%
!! CGGCATTTTGACATTGATTA+AGG - chr3_1:90169299-90169318 None:intergenic 35.0%
TAATCAATGTCAAAATGCCG+CGG + chr3_1:90169299-90169318 Msa0386420:intron 35.0%
AAACTTTGCAAAGAGGATTG+TGG - chr3_1:90169393-90169412 Msa0386430:CDS 35.0%
! TCCTCTTTGCAAAGTTTTTG+GGG + chr3_1:90169396-90169415 Msa0386420:intron 35.0%
TCACTTGTGAGCTTTCTATT+TGG + chr3_1:90169449-90169468 Msa0386420:intron 35.0%
! CTTTCTATTTGGCTCGTATA+AGG + chr3_1:90169460-90169479 Msa0386420:intron 35.0%
AATGGTTGAATCTCCAAAGA+AGG - chr3_1:90169614-90169633 Msa0386430:CDS 35.0%
!! GAATACCATGATGATGGAAT+TGG - chr3_1:90169637-90169656 Msa0386430:CDS 35.0%
AAACTACTGGAATGGAAGAA+AGG - chr3_1:90169672-90169691 Msa0386430:CDS 35.0%
TTTGAGTAATGATGGCAATG+AGG - chr3_1:90169695-90169714 Msa0386430:CDS 35.0%
TTTCACAATTCTTCTCTCCA+AGG + chr3_1:90169747-90169766 Msa0386420:intron 35.0%
TGAGCTCCTATGTTATATAG+AGG - chr3_1:90169783-90169802 Msa0386440:CDS 35.0%
! CGATGATGATGATGAAGATA+TGG - chr3_1:90169815-90169834 Msa0386440:CDS 35.0%
TCTTGCTCTATAACTAGTTC+GGG + chr3_1:90169838-90169857 Msa0386420:intron 35.0%
!! TCAACACTAATTGTTTCTGG+GGG + chr3_1:90169957-90169976 Msa0386420:intron 35.0%
AGTACCCATAATCCTGATAT+TGG + chr3_1:90170004-90170023 Msa0386420:intron 35.0%
CAATTGAAGTCTCGTGTAAA+TGG - chr3_1:90170127-90170146 Msa0386440:intron 35.0%
CATTTACACGAGACTTCAAT+TGG + chr3_1:90170125-90170144 Msa0386420:intron 35.0%
! AAGATTTTACCTCAAAGCTC+AGG - chr3_1:90170151-90170170 Msa0386440:intron 35.0%
TGAAGTTGAATTCATCATCG+GGG - chr3_1:90170233-90170252 Msa0386440:CDS 35.0%
!!! CCATTTTTTGGTTCGGATTT+AGG - chr3_1:90170275-90170294 Msa0386440:intron 35.0%
CCTAAATCCGAACCAAAAAA+TGG + chr3_1:90170272-90170291 Msa0386420:intron 35.0%
!!! TAAAACATGCCATTTTTCGC+CGG + chr3_1:90170298-90170317 Msa0386420:intron 35.0%
TTTGTTGCATTGCATGATGA+GGG - chr3_1:90170657-90170676 None:intergenic 35.0%
GATACTCTATGGATATGTGT+GGG + chr3_1:90170993-90171012 Msa0386420:intron 35.0%
TCGAAGAATTGGTATCGTAT+TGG + chr3_1:90171023-90171042 Msa0386420:intron 35.0%
TGTCCTTTATGGATACATGA+AGG + chr3_1:90171049-90171068 Msa0386420:intron 35.0%
GTCCTTTATGGATACATGAA+GGG + chr3_1:90171050-90171069 Msa0386420:intron 35.0%
ATCCCTTCATGTATCCATAA+AGG - chr3_1:90171055-90171074 None:intergenic 35.0%
TGTCCTTTATGGATACATGA+AGG + chr3_1:90171049-90171068 Msa0386420:intron 35.0%
GTCCTTTATGGATACATGAA+GGG + chr3_1:90171050-90171069 Msa0386420:intron 35.0%
ATCCCTTCATGTATCCATAA+AGG - chr3_1:90171055-90171074 None:intergenic 35.0%
CATTCATATATGCAATCCCT+TGG - chr3_1:90171209-90171228 None:intergenic 35.0%
! TTTATGATGATGTTCTTGGC+AGG + chr3_1:90171378-90171397 Msa0386420:intron 35.0%
!!! CAGTATTTTGATTCCTGCTA+AGG - chr3_1:90171482-90171501 None:intergenic 35.0%
CACTATAACATTTGAAGGGA+GGG - chr3_1:90171562-90171581 None:intergenic 35.0%
ACACTATAACATTTGAAGGG+AGG - chr3_1:90171563-90171582 None:intergenic 35.0%
!!! TGAGTTTTGAGAATGACTGT+TGG + chr3_1:90171590-90171609 Msa0386420:three_prime_UTR 35.0%
TTAACGAAACGAAAGGGTCT+CGG + chr3_1:90166907-90166926 Msa0386420:five_prime_UTR 40.0%
ACGATTGAAGACTCAAACTC+TGG - chr3_1:90166984-90167003 None:intergenic 40.0%
AGTAACTGGAGAAGAACACT+CGG + chr3_1:90167042-90167061 Msa0386420:CDS 40.0%
TCGTTCGTGAACAATTCGAT+GGG + chr3_1:90167075-90167094 Msa0386420:CDS 40.0%
ATAGCGAAAAGGATCATCAG+AGG - chr3_1:90167226-90167245 None:intergenic 40.0%
CGAGTTTCAACATAGCGAAA+AGG - chr3_1:90167237-90167256 None:intergenic 40.0%
AAGAAAGAGGAACGAACTTG+AGG - chr3_1:90167276-90167295 None:intergenic 40.0%
GCATATCCAAACACAATCCT+AGG - chr3_1:90167761-90167780 None:intergenic 40.0%
!!! AACTAGAGCATGGTTTTGGT+TGG + chr3_1:90167846-90167865 Msa0386420:intron 40.0%
!!! TGGTTTTGGTTGGATGCATT+TGG + chr3_1:90167856-90167875 Msa0386420:intron 40.0%
!!! GGTTTTGGTTGGATGCATTT+GGG + chr3_1:90167857-90167876 Msa0386420:intron 40.0%
! GTTTTCAGTTTCTCGAAACC+AGG + chr3_1:90168199-90168218 Msa0386420:intron 40.0%
TCTTGCTCGAAACGAACATA+AGG + chr3_1:90168264-90168283 Msa0386420:intron 40.0%
TTCAAGCAAGACCACCAAAA+GGG - chr3_1:90168333-90168352 None:intergenic 40.0%
ATTCAAGCAAGACCACCAAA+AGG - chr3_1:90168334-90168353 None:intergenic 40.0%
ATTCCATGGGGCTATATGAT+AGG + chr3_1:90168363-90168382 Msa0386420:intron 40.0%
! TGGTTCTATGGATGTTTGCA+AGG + chr3_1:90168615-90168634 Msa0386420:intron 40.0%
GGTTCTATGGATGTTTGCAA+GGG + chr3_1:90168616-90168635 Msa0386420:intron 40.0%
! CTGGTTGAAACACACTGTTT+TGG - chr3_1:90168822-90168841 None:intergenic 40.0%
TTGCAAAGCTCAACTCAAGT+CGG + chr3_1:90168985-90169004 Msa0386420:intron 40.0%
ATCACAACACAATTCCATGG+GGG + chr3_1:90169114-90169133 Msa0386420:intron 40.0%
ATTCCATGGGGGTAGATTAT+AGG + chr3_1:90169125-90169144 Msa0386420:intron 40.0%
TCCCCAAAAACTTTGCAAAG+AGG - chr3_1:90169400-90169419 Msa0386430:CDS 40.0%
!! TCTTTGCAAAGTTTTTGGGG+AGG + chr3_1:90169399-90169418 Msa0386420:intron 40.0%
AGAAAGCTCACAAGTGAAGA+AGG - chr3_1:90169446-90169465 Msa0386430:CDS 40.0%
TCGACACACATCATATTCTG+TGG - chr3_1:90169510-90169529 Msa0386430:CDS 40.0%
ATATGATGTGTGTCGAAAGC+AGG + chr3_1:90169514-90169533 Msa0386420:intron 40.0%
TGGTCATCTGACAAGGAAAT+CGG - chr3_1:90169549-90169568 Msa0386430:intron 40.0%
AAGAGTTTGGTCATCTGACA+AGG - chr3_1:90169556-90169575 Msa0386430:intron 40.0%
GGACAGGAGATATAAGAGTT+TGG - chr3_1:90169569-90169588 Msa0386430:intron 40.0%
ACAGACAGAAACAGAGAAGT+TGG - chr3_1:90169590-90169609 Msa0386430:intron 40.0%
GTTTCTGTCTGTACCTTCTT+TGG + chr3_1:90169598-90169617 Msa0386420:intron 40.0%
!! CCATGATGATGGAATTGGAA+TGG - chr3_1:90169632-90169651 Msa0386430:CDS 40.0%
CCATTCCAATTCCATCATCA+TGG + chr3_1:90169629-90169648 Msa0386420:intron 40.0%
! GTTGGTGAATACCATGATGA+TGG - chr3_1:90169643-90169662 Msa0386430:CDS 40.0%
!! ATGGAAGAAAGGCATTGTGT+TGG - chr3_1:90169661-90169680 Msa0386430:CDS 40.0%
CAATGAGGAAACTACTGGAA+TGG - chr3_1:90169680-90169699 Msa0386430:CDS 40.0%
ACTCCAGAAACAGAAGAACA+CGG + chr3_1:90169907-90169926 Msa0386420:intron 40.0%
!! CAACACTAATTGTTTCTGGG+GGG + chr3_1:90169958-90169977 Msa0386420:intron 40.0%
! TTTAGGATTCCGGCGAAAAA+TGG - chr3_1:90170310-90170329 Msa0386440:intron 40.0%
TTGTTGCATTGCATGATGAG+GGG - chr3_1:90170656-90170675 None:intergenic 40.0%
! GTTTGTTGCATTGCATGATG+AGG - chr3_1:90170658-90170677 None:intergenic 40.0%
TCTTTCAACGCATCTGAATG+AGG - chr3_1:90170873-90170892 None:intergenic 40.0%
! AGACAATACGGTTTGGACTT+TGG - chr3_1:90170898-90170917 None:intergenic 40.0%
CAACTTGAGACAATACGGTT+TGG - chr3_1:90170905-90170924 None:intergenic 40.0%
GAGTGCAACTTGAGACAATA+CGG - chr3_1:90170910-90170929 None:intergenic 40.0%
! AAAGTGGCTTGGATACTCTA+TGG + chr3_1:90170982-90171001 Msa0386420:intron 40.0%
GGATACTCTATGGATATGTG+TGG + chr3_1:90170992-90171011 Msa0386420:intron 40.0%
!! TGGGTGAAGTATCGAAGAAT+TGG + chr3_1:90171012-90171031 Msa0386420:intron 40.0%
CGTATTGGATGTGTCCTTTA+TGG + chr3_1:90171038-90171057 Msa0386420:intron 40.0%
GTTCTTGGCAGGAATCAAAA+TGG + chr3_1:90171389-90171408 Msa0386420:intron 40.0%
AATTAGGGTGTGCCACACAA+GGG - chr3_1:90166857-90166876 None:intergenic 45.0%
AAATTAGGGTGTGCCACACA+AGG - chr3_1:90166858-90166877 None:intergenic 45.0%
CTTCTTCAATGGCGAGTAAC+TGG + chr3_1:90167028-90167047 Msa0386420:exon 45.0%
GTCGTTCGTGAACAATTCGA+TGG + chr3_1:90167074-90167093 Msa0386420:CDS 45.0%
TTCGTGAACAATTCGATGGG+TGG + chr3_1:90167078-90167097 Msa0386420:CDS 45.0%
! TCGCGTTTGAGATCTTGATC+AGG - chr3_1:90167174-90167193 None:intergenic 45.0%
! TGGTTGGATGCATTTGGGTT+TGG + chr3_1:90167862-90167881 Msa0386420:intron 45.0%
ACGGTGCGTTTACATTAGTG+AGG + chr3_1:90168136-90168155 Msa0386420:intron 45.0%
!! CAAACAGCACGTACTGACTT+GGG - chr3_1:90168239-90168258 None:intergenic 45.0%
!! ACAAACAGCACGTACTGACT+TGG - chr3_1:90168240-90168259 None:intergenic 45.0%
! TTGACCACGAAGTTCCCTTT+TGG + chr3_1:90168316-90168335 Msa0386420:intron 45.0%
TGAATTGCAGCACGATTCCA+TGG + chr3_1:90168349-90168368 Msa0386420:intron 45.0%
GAATTGCAGCACGATTCCAT+GGG + chr3_1:90168350-90168369 Msa0386420:intron 45.0%
AATTGCAGCACGATTCCATG+GGG + chr3_1:90168351-90168370 Msa0386420:intron 45.0%
CATCCTATCATATAGCCCCA+TGG - chr3_1:90168369-90168388 None:intergenic 45.0%
CATGGGGCTATATGATAGGA+TGG + chr3_1:90168367-90168386 Msa0386420:intron 45.0%
AAAGGGGTAGAGGGAAAAGT+TGG + chr3_1:90168671-90168690 Msa0386420:intron 45.0%
!!! AACACACTGTTTTGGAAGGC+TGG - chr3_1:90168814-90168833 None:intergenic 45.0%
ACGGTGCGTTTAGATTAGTG+AGG + chr3_1:90168902-90168921 Msa0386420:intron 45.0%
! GTTTTCGGTTTCTCGAAACC+AGG + chr3_1:90168962-90168981 Msa0386420:intron 45.0%
!! TTGAGTTGAGCTTTGCAACC+TGG - chr3_1:90168983-90169002 None:intergenic 45.0%
TTCAAGCGAGAAGAGACGAA+CGG - chr3_1:90169017-90169036 None:intergenic 45.0%
CATCCTATAATCTACCCCCA+TGG - chr3_1:90169131-90169150 None:intergenic 45.0%
CATGGGGGTAGATTATAGGA+TGG + chr3_1:90169129-90169148 Msa0386420:intron 45.0%
GTGCTAGCATAGTAGCATGT+AGG - chr3_1:90169161-90169180 None:intergenic 45.0%
CACAAGCAATGTAGTCAGGA+TGG - chr3_1:90169185-90169204 None:intergenic 45.0%
TTGCAAAGAGGATTGTGGCA+CGG - chr3_1:90169388-90169407 Msa0386430:CDS 45.0%
!! TTGCAAAGTTTTTGGGGAGG+AGG + chr3_1:90169402-90169421 Msa0386420:intron 45.0%
CATATTCTGTGGTCTGAGAG+TGG - chr3_1:90169499-90169518 Msa0386430:CDS 45.0%
CAGAAACAGAGAAGTTGGAC+AGG - chr3_1:90169585-90169604 Msa0386430:intron 45.0%
GATGGCAATGAGGAAACTAC+TGG - chr3_1:90169685-90169704 Msa0386430:CDS 45.0%
CTCCAGAAACAGAAGAACAC+GGG + chr3_1:90169908-90169927 Msa0386420:intron 45.0%
TCCAGAAACAGAAGAACACG+GGG + chr3_1:90169909-90169928 Msa0386420:intron 45.0%
!! ACTAATTGTTTCTGGGGGGA+TGG + chr3_1:90169962-90169981 Msa0386420:intron 45.0%
!! CTAATTGTTTCTGGGGGGAT+GGG + chr3_1:90169963-90169982 Msa0386420:intron 45.0%
!! TAATTGTTTCTGGGGGGATG+GGG + chr3_1:90169964-90169983 Msa0386420:intron 45.0%
CTCATCCATTGTGATGCATG+AGG - chr3_1:90170102-90170121 Msa0386440:intron 45.0%
! TTCAATTGGCCTGAGCTTTG+AGG + chr3_1:90170139-90170158 Msa0386420:intron 45.0%
! TTTGCGGGTGTTTAGGATTC+CGG - chr3_1:90170320-90170339 Msa0386440:intron 45.0%
TCCTAAACACCCGCAAACTT+CGG + chr3_1:90170323-90170342 Msa0386420:intron 45.0%
CAGGTCTGATTCTTTCTGTG+GGG - chr3_1:90170386-90170405 Msa0386440:CDS 45.0%
CCAGGTCTGATTCTTTCTGT+GGG - chr3_1:90170387-90170406 Msa0386440:CDS 45.0%
CCACAGAAAGAATCAGACCT+GGG + chr3_1:90170385-90170404 Msa0386420:intron 45.0%
CACAGAAAGAATCAGACCTG+GGG + chr3_1:90170386-90170405 Msa0386420:intron 45.0%
CGGGAATCCATCTTCAACAA+CGG - chr3_1:90170495-90170514 Msa0386440:CDS 45.0%
TAGAGGACCAGTCATCTTCA+CGG - chr3_1:90170521-90170540 Msa0386440:CDS 45.0%
! TGAAGATGACTGGTCCTCTA+TGG + chr3_1:90170521-90170540 Msa0386420:intron 45.0%
TTGACGAGTCATGGAGAATG+CGG - chr3_1:90170581-90170600 None:intergenic 45.0%
ACTGGGTAATTGACGAGTCA+TGG - chr3_1:90170590-90170609 None:intergenic 45.0%
GGAAGAAGTGATCACTCACT+GGG - chr3_1:90170607-90170626 None:intergenic 45.0%
! AATTTTCCGGTCAGTGGGAA+CGG - chr3_1:90170630-90170649 None:intergenic 45.0%
! TGATGAGGGGGTGAATTTTC+CGG - chr3_1:90170643-90170662 None:intergenic 45.0%
TGTTGCATTGCATGATGAGG+GGG - chr3_1:90170655-90170674 None:intergenic 45.0%
AATGCATGCTTCATGGCCAA+GGG + chr3_1:90171225-90171244 Msa0386420:intron 45.0%
!! TGTTTTTGCTCTCCCTTAGC+AGG + chr3_1:90171466-90171485 Msa0386420:three_prime_UTR 45.0%
! TTGGTAACAACCCATCCTTC+AGG + chr3_1:90171609-90171628 Msa0386420:three_prime_UTR 45.0%
!!! ATTAATATATTTTTTTAATG+TGG - chr3_1:90169245-90169264 None:intergenic 5.0%
!!! ACATATTTTAAATAAATTAA+AGG - chr3_1:90169329-90169348 None:intergenic 5.0%
AATTCGATGGGTGGTCTGAG+AGG + chr3_1:90167087-90167106 Msa0386420:CDS 50.0%
AGGAAGCAACCTCGCTTCTT+GGG + chr3_1:90167110-90167129 Msa0386420:CDS 50.0%
CGAACTTGAGGATCAGGAAC+AGG - chr3_1:90167264-90167283 None:intergenic 50.0%
GAGGAACGAACTTGAGGATC+AGG - chr3_1:90167270-90167289 None:intergenic 50.0%
! ACCACGAAGTTCCCTTTTGG+TGG + chr3_1:90168319-90168338 Msa0386420:intron 50.0%
ACCACCAAAAGGGAACTTCG+TGG - chr3_1:90168323-90168342 None:intergenic 50.0%
TGTTTGCAAGGGAGAGAGAG+TGG + chr3_1:90168627-90168646 Msa0386420:intron 50.0%
GTTTGCAAGGGAGAGAGAGT+GGG + chr3_1:90168628-90168647 Msa0386420:intron 50.0%
TTTGCAAGGGAGAGAGAGTG+GGG + chr3_1:90168629-90168648 Msa0386420:intron 50.0%
TCCGCAAGTGAGAATGAGTG+AGG + chr3_1:90168694-90168713 Msa0386420:intron 50.0%
CCCTCACTCATTCTCACTTG+CGG - chr3_1:90168698-90168717 None:intergenic 50.0%
CCGCAAGTGAGAATGAGTGA+GGG + chr3_1:90168695-90168714 Msa0386420:intron 50.0%
CGCAAGTGAGAATGAGTGAG+GGG + chr3_1:90168696-90168715 Msa0386420:intron 50.0%
ACCGTGACGTCTCTGGTATA+TGG + chr3_1:90168729-90168748 Msa0386420:intron 50.0%
CCCATATACCAGAGACGTCA+CGG - chr3_1:90168733-90168752 None:intergenic 50.0%
CCGTGACGTCTCTGGTATAT+GGG + chr3_1:90168730-90168749 Msa0386420:intron 50.0%
ACGTCTCTGGTATATGGGAG+TGG + chr3_1:90168735-90168754 Msa0386420:intron 50.0%
CGTCTCTGGTATATGGGAGT+GGG + chr3_1:90168736-90168755 Msa0386420:intron 50.0%
!! GGTATATGGGAGTGGGTTGT+AGG + chr3_1:90168743-90168762 Msa0386420:intron 50.0%
GTGAGGAAATCCAAACGCAG+CGG + chr3_1:90168153-90168172 Msa0386420:intron 50.0%
TAAACACGTTCCGCTGCGTT+TGG - chr3_1:90168932-90168951 None:intergenic 50.0%
TTGACCACGAAACTCCCTTC+CGG + chr3_1:90169078-90169097 Msa0386420:intron 50.0%
TGTGATTCAAGCAAGACCGC+CGG - chr3_1:90169100-90169119 None:intergenic 50.0%
CTGACAAGGAAATCGGCATC+AGG - chr3_1:90169542-90169561 Msa0386430:intron 50.0%
CCAGAAACAGAAGAACACGG+GGG + chr3_1:90169910-90169929 Msa0386420:intron 50.0%
!! AATTGTTTCTGGGGGGATGG+GGG + chr3_1:90169965-90169984 Msa0386420:intron 50.0%
GTGCTCCTCATGCATCACAA+TGG + chr3_1:90170094-90170113 Msa0386420:intron 50.0%
CCTAAACACCCGCAAACTTC+GGG + chr3_1:90170324-90170343 Msa0386420:intron 50.0%
TTCTGCCGGAGAAGCAAAGT+CGG + chr3_1:90170347-90170366 Msa0386420:intron 50.0%
CCCACAGAAAGAATCAGACC+TGG + chr3_1:90170384-90170403 Msa0386420:intron 50.0%
CCCAGGTCTGATTCTTTCTG+TGG - chr3_1:90170388-90170407 Msa0386440:CDS 50.0%
TATGACTTTGCCGGCGTCTT+TGG - chr3_1:90170445-90170464 Msa0386440:CDS 50.0%
AAAGACGCCGGCAAAGTCAT+AGG + chr3_1:90170444-90170463 Msa0386420:intron 50.0%
ATGGACGCCTATGACTTTGC+CGG - chr3_1:90170454-90170473 Msa0386440:CDS 50.0%
! AGGCGTCCATCTTTTTGCCT+CGG + chr3_1:90170464-90170483 Msa0386420:intron 50.0%
GTGTCTCCGAGGCAAAAAGA+TGG - chr3_1:90170473-90170492 Msa0386440:CDS 50.0%
GGAGACACCGTTGTTGAAGA+TGG + chr3_1:90170485-90170504 Msa0386420:intron 50.0%
ACCAGTCATCTTCACGGACA+CGG - chr3_1:90170515-90170534 Msa0386440:CDS 50.0%
ACTGGTCCTCTATGGATCAC+TGG + chr3_1:90170529-90170548 Msa0386420:intron 50.0%
TCATCGCCAGTGATCCATAG+AGG - chr3_1:90170538-90170557 Msa0386440:CDS 50.0%
GAGTCATGGAGAATGCGGAT+GGG - chr3_1:90170576-90170595 None:intergenic 50.0%
GGGAAGAAGTGATCACTCAC+TGG - chr3_1:90170608-90170627 None:intergenic 50.0%
! ATTTTCCGGTCAGTGGGAAC+GGG - chr3_1:90170629-90170648 None:intergenic 50.0%
! GGGTGAATTTTCCGGTCAGT+GGG - chr3_1:90170635-90170654 None:intergenic 50.0%
GAATGCATGCTTCATGGCCA+AGG + chr3_1:90171224-90171243 Msa0386420:intron 50.0%
GAAGAACACTCGGCAACGCA+AGG + chr3_1:90167052-90167071 Msa0386420:CDS 55.0%
GAGGAAGCAACCTCGCTTCT+TGG + chr3_1:90167109-90167128 Msa0386420:CDS 55.0%
!! CAGCACGTACTGACTTGGGT+TGG - chr3_1:90168235-90168254 None:intergenic 55.0%
!! ATGGGAGTGGGTTGTAGGAG+TGG + chr3_1:90168748-90168767 Msa0386420:intron 55.0%
TTCAAGCAAGACCGCCGGAA+GGG - chr3_1:90169095-90169114 None:intergenic 55.0%
ATTCAAGCAAGACCGCCGGA+AGG - chr3_1:90169096-90169115 None:intergenic 55.0%
TTCTGTGGTCTGAGAGTGGC+TGG - chr3_1:90169495-90169514 Msa0386430:CDS 55.0%
CCCCCGTGTTCTTCTGTTTC+TGG - chr3_1:90169913-90169932 Msa0386440:CDS 55.0%
!! ATTGTTTCTGGGGGGATGGG+GGG + chr3_1:90169966-90169985 Msa0386420:intron 55.0%
ACAAGGAGCTGAGCCATCTC+CGG - chr3_1:90170203-90170222 Msa0386440:CDS 55.0%
ATCATCGGGGCTGAGCTACA+AGG - chr3_1:90170220-90170239 Msa0386440:CDS 55.0%
CCCGAAGTTTGCGGGTGTTT+AGG - chr3_1:90170327-90170346 Msa0386440:intron 55.0%
! AGCAGCCGACTTTGCTTCTC+CGG - chr3_1:90170355-90170374 Msa0386440:CDS 55.0%
ACCTGGGGAATTTGTGCGTG+AGG + chr3_1:90170401-90170420 Msa0386420:intron 55.0%
ACCTCACGCACAAATTCCCC+AGG - chr3_1:90170405-90170424 Msa0386440:CDS 55.0%
TGGGGAATTTGTGCGTGAGG+TGG + chr3_1:90170404-90170423 Msa0386420:intron 55.0%
! GCGTCTTTGGAGATCCACCT+AGG - chr3_1:90170432-90170451 Msa0386440:CDS 55.0%
AGGTGGATCTCCAAAGACGC+CGG + chr3_1:90170432-90170451 Msa0386420:intron 55.0%
CTTCAACAACGGTGTCTCCG+AGG - chr3_1:90170484-90170503 Msa0386440:CDS 55.0%
CCAGTCATCTTCACGGACAC+GGG - chr3_1:90170514-90170533 Msa0386440:CDS 55.0%
CGAGTCATGGAGAATGCGGA+TGG - chr3_1:90170577-90170596 None:intergenic 55.0%
! TTTTCCGGTCAGTGGGAACG+GGG - chr3_1:90170628-90170647 None:intergenic 55.0%
! GGGGTGAATTTTCCGGTCAG+TGG - chr3_1:90170636-90170655 None:intergenic 55.0%
TCGATGGGTGGTCTGAGAGG+AGG + chr3_1:90167090-90167109 Msa0386420:CDS 60.0%
! CTCGCTTCTTGGGTTGTCGC+CGG + chr3_1:90167120-90167139 Msa0386420:CDS 60.0%
AACACGCGGAACGCTGCGTT+TGG - chr3_1:90168166-90168185 None:intergenic 60.0%
! TGGGTTGGACTTCTGCGACC+TGG - chr3_1:90168220-90168239 None:intergenic 60.0%
TTGCGTGACCGTGACGTCTC+TGG + chr3_1:90168722-90168741 Msa0386420:intron 60.0%
ACCACGAAACTCCCTTCCGG+CGG + chr3_1:90169081-90169100 Msa0386420:intron 60.0%
CCAGCGGGTCAGTGATGACA+TGG - chr3_1:90170180-90170199 Msa0386440:intron 60.0%
CCATGTCATCACTGACCCGC+TGG + chr3_1:90170177-90170196 Msa0386420:intron 60.0%
CGGCAGAACCCGAAGTTTGC+GGG - chr3_1:90170335-90170354 Msa0386440:CDS 60.0%
CCGGCAGAACCCGAAGTTTG+CGG - chr3_1:90170336-90170355 Msa0386440:CDS 60.0%
! CCGCAAACTTCGGGTTCTGC+CGG + chr3_1:90170333-90170352 Msa0386420:intron 60.0%
TTGTGCGTGAGGTGGCTCCT+AGG + chr3_1:90170412-90170431 Msa0386420:intron 60.0%
CCCGTGTCCGTGAAGATGAC+TGG + chr3_1:90170511-90170530 Msa0386420:intron 60.0%
TCTTCCCCGTTCCCACTGAC+CGG + chr3_1:90170621-90170640 Msa0386420:intron 60.0%
CGGCGACAACCCAAGAAGCG+AGG - chr3_1:90167122-90167141 None:intergenic 65.0%
ACCGCCGGAAGGGAGTTTCG+TGG - chr3_1:90169085-90169104 None:intergenic 65.0%
GTCATCACTGACCCGCTGGC+CGG + chr3_1:90170181-90170200 Msa0386420:intron 65.0%
TGCGTGAGGTGGCTCCTAGG+TGG + chr3_1:90170415-90170434 Msa0386420:intron 65.0%
ACTGACCCGCTGGCCGGAGA+TGG + chr3_1:90170187-90170206 Msa0386420:intron 70.0%
CTGAGCCATCTCCGGCCAGC+GGG - chr3_1:90170195-90170214 Msa0386440:CDS 70.0%
GCTGAGCCATCTCCGGCCAG+CGG - chr3_1:90170196-90170215 Msa0386440:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90166854 90171676 90166854 ID=Msa0386420;Name=Msa0386420
chr3_1 mRNA 90166854 90171676 90166854 ID=Msa0386420-mRNA-1;Parent=Msa0386420;Name=Msa0386420-mRNA-1;_AED=0.05;_eAED=0.05;_QI=182|1|1|1|0.5|0.33|3|280|105
chr3_1 exon 90166854 90167278 90166854 ID=Msa0386420-mRNA-1:exon:24782;Parent=Msa0386420-mRNA-1
chr3_1 exon 90167366 90167443 90167366 ID=Msa0386420-mRNA-1:exon:24783;Parent=Msa0386420-mRNA-1
chr3_1 exon 90171400 90171676 90171400 ID=Msa0386420-mRNA-1:exon:24784;Parent=Msa0386420-mRNA-1
chr3_1 five_prime_UTR 90166854 90167035 90166854 ID=Msa0386420-mRNA-1:five_prime_utr;Parent=Msa0386420-mRNA-1
chr3_1 CDS 90167036 90167278 90167036 ID=Msa0386420-mRNA-1:cds;Parent=Msa0386420-mRNA-1
chr3_1 CDS 90167366 90167440 90167366 ID=Msa0386420-mRNA-1:cds;Parent=Msa0386420-mRNA-1
chr3_1 three_prime_UTR 90167441 90167443 90167441 ID=Msa0386420-mRNA-1:three_prime_utr;Parent=Msa0386420-mRNA-1
chr3_1 three_prime_UTR 90171400 90171676 90171400 ID=Msa0386420-mRNA-1:three_prime_utr;Parent=Msa0386420-mRNA-1
Gene Sequence

>Msa0386420

ATGGCGAGTAACTGGAGAAGAACACTCGGCAACGCAAGGTCGTTCGTGAACAATTCGATGGGTGGTCTGAGAGGAGGAAGCAACCTCGCTTCTTGGGTTGTCGCCGGAACCCTAGCTTATTATCTTTGGATCAAACCTGATCAAGATCTCAAACGCGAACAACAAGCTAAAGCTGCTATTGCTGCTTCCTCTGATGATCCTTTTCGCTATGTTGAAACTCGAAAACCTGTTCCTGATCCTCAAGTTACTGGTTTGATATATGGAAACAACAACAACAACAACAACAACAAAGACAAATCATTTAGGGCAGATGATTAG
Protein sequence

>Msa0386420

MASNWRRTLGNARSFVNNSMGGLRGGSNLASWVVAGTLAYYLWIKPDQDLKREQQAKAAIAASSDDPFRYVETRKPVPDPQVTGLIYGNNNNNNNNKDKSFRADD*