AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0329350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0329350 MtrunA17_Chr0c02g0489651 70.395 152 5 2 1 112 2 153 3.56e-59 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0329350 AT1G79200.1 70.270 74 22 0 39 112 85 158 2.26e-34 116

Find 40 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTGTTTGGTTTCAATTT+TGG 0.088882 2_4:-42523226 Msa0329350:five_prime_UTR
ATATATATGGGTAGGTAAAT+TGG 0.213754 2_4:-42523324 Msa0329350:five_prime_UTR
CGCCTCGCACAGCCCATAAA+TGG 0.229703 2_4:-42519459 Msa0329350:CDS
CATAAAGACACAAGGGAAAT+TGG 0.265284 2_4:+42519139 None:intergenic
CTTACTACCGTAATCAAATT+CGG 0.293955 2_4:-42523296 Msa0329350:five_prime_UTR
AACAAAGGGTTTATAGAGAT+TGG 0.299376 2_4:+42519394 None:intergenic
ACATTTGTCTTACATGATAA+AGG 0.311477 2_4:-42519052 Msa0329350:three_prime_UTR
GGTAGCAAACTCATTATTCT+TGG 0.322349 2_4:+42519615 None:intergenic
TTTGTCAAAGCTTGGAATAA+AGG 0.336053 2_4:-42519520 Msa0329350:CDS
TTACTACCGTAATCAAATTC+GGG 0.357972 2_4:-42523295 Msa0329350:five_prime_UTR
ACCTGAGGTTCAAGCCTTCA+AGG 0.386007 2_4:+42523265 None:intergenic
GACAAATGTGGCACACATAT+TGG 0.389618 2_4:+42519066 None:intergenic
ACCTTGAAGGCTTGAACCTC+AGG 0.390393 2_4:-42523266 Msa0329350:five_prime_UTR
GTTGTTAGTAACTGTTACAT+AGG 0.419631 2_4:+42519364 None:intergenic
GTGTTAGCAGAGCACTTGTT+TGG 0.432504 2_4:-42523238 Msa0329350:five_prime_UTR
TTGCAGAATTTGTCAAAGCT+TGG 0.436101 2_4:-42519528 Msa0329350:CDS
TTGTTCCCCGAATTTGATTA+CGG 0.455086 2_4:+42523289 None:intergenic
GCCTTACCGATTCACACAAC+AGG 0.473615 2_4:+42519104 None:intergenic
ATTCGGGGAACAAACCTTGA+AGG 0.483748 2_4:-42523279 Msa0329350:five_prime_UTR
GTATCAATCTTTAAGTGTGT+TGG 0.492368 2_4:-42519280 Msa0329350:three_prime_UTR
TTAAGTGTGTTGGTTGTTCG+CGG 0.503849 2_4:-42519270 Msa0329350:three_prime_UTR
ATTCTTCTCTTCTTTCAGCC+AGG 0.510461 2_4:+42519594 None:intergenic
ACATAGGAAATCTAAACAAA+GGG 0.515262 2_4:+42519380 None:intergenic
CTTGAATCGAATTACTATGA+AGG 0.515517 2_4:-42519493 Msa0329350:CDS
GGTTATGATTTGCAGAGTGA+CGG 0.539060 2_4:-42519171 Msa0329350:three_prime_UTR
AGAATAATGAGTTTGCTACC+TGG 0.553697 2_4:-42519612 Msa0329350:CDS
GCCTGTTGTGTGAATCGGTA+AGG 0.562152 2_4:-42519105 Msa0329350:three_prime_UTR
AGTGTGCCTGTTGTGTGAAT+CGG 0.571109 2_4:-42519110 Msa0329350:three_prime_UTR
TACATAGGAAATCTAAACAA+AGG 0.572493 2_4:+42519379 None:intergenic
TTCCATTTATGGGCTGTGCG+AGG 0.589094 2_4:+42519457 None:intergenic
CTTGGCAAAATAGTCATCAC+CGG 0.597107 2_4:+42519633 None:intergenic
CCTTCAGATTCGGATTGCGA+AGG 0.611110 2_4:+42523163 None:intergenic
CTGATTCACATAAAGACACA+AGG 0.611622 2_4:+42519131 None:intergenic
CAGCAAAAGTGAAAGAAACA+TGG 0.625791 2_4:-42520359 Msa0329350:intron
CCTTCGCAATCCGAATCTGA+AGG 0.628237 2_4:-42523163 Msa0329350:intron
ATATTGGTTAATATGTGTAG+TGG 0.632221 2_4:+42519082 None:intergenic
TACTACCGTAATCAAATTCG+GGG 0.652348 2_4:-42523294 Msa0329350:five_prime_UTR
TTTATCATGTAAGACAAATG+TGG 0.660289 2_4:+42519054 None:intergenic
TGATTCACATAAAGACACAA+GGG 0.707752 2_4:+42519132 None:intergenic
TCTGCTAACACAATCACCTG+AGG 0.723509 2_4:+42523250 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAACCAAAAATATATA+TGG - chr2_4:42518999-42519018 Msa0329350:three_prime_UTR 10.0%
!! AAAAAACCAAAAATATATAT+GGG - chr2_4:42519000-42519019 Msa0329350:three_prime_UTR 10.0%
!! ATATATATATAAAAGATTCA+AGG + chr2_4:42520330-42520349 None:intergenic 10.0%
!! AAATATATTTCCAAAATTAA+TGG - chr2_4:42520555-42520574 Msa0329350:intron 10.0%
!! AATATATTTCCAAAATTAAT+GGG - chr2_4:42520556-42520575 Msa0329350:intron 10.0%
!! CAAAAAAAAAAAAAAAAATG+GGG - chr2_4:42523136-42523155 Msa0329350:intron 10.0%
!! AAAAAAAAAAAAAAAAATGG+GGG - chr2_4:42523137-42523156 Msa0329350:intron 10.0%
!! TGGAATAAAAGTAAATAATT+AGG - chr2_4:42519261-42519280 Msa0329350:three_prime_UTR 15.0%
!! TCAAAATAGTGAAATTAAAT+TGG - chr2_4:42519342-42519361 Msa0329350:three_prime_UTR 15.0%
!! CAAAATAGTGAAATTAAATT+GGG - chr2_4:42519343-42519362 Msa0329350:three_prime_UTR 15.0%
!!! AATACCTATAAATCATTTTT+AGG - chr2_4:42520454-42520473 Msa0329350:intron 15.0%
!! TAAACCTAAAAATGATTTAT+AGG + chr2_4:42520461-42520480 None:intergenic 15.0%
!! TATGTTCTGATAAAAAAAAA+GGG + chr2_4:42521262-42521281 None:intergenic 15.0%
!! ATATGTTCTGATAAAAAAAA+AGG + chr2_4:42521263-42521282 None:intergenic 15.0%
!! AAATCCAAACATATTAAAAA+AGG - chr2_4:42522532-42522551 Msa0329350:intron 15.0%
!! TTCCAAAGATAAATATGATA+AGG - chr2_4:42519542-42519561 Msa0329350:CDS 20.0%
!! TCCAAAGATAAATATGATAA+GGG - chr2_4:42519543-42519562 Msa0329350:CDS 20.0%
!! ATTTCTGTAACAAAATCAAA+TGG - chr2_4:42519662-42519681 Msa0329350:intron 20.0%
!! AGTAGTTAGTAATGTTTAAT+TGG - chr2_4:42519765-42519784 Msa0329350:intron 20.0%
!!! TTGGATTTCATTTTTGTTAA+TGG - chr2_4:42519869-42519888 Msa0329350:intron 20.0%
!!! TGGATTTCATTTTTGTTAAT+GGG - chr2_4:42519870-42519889 Msa0329350:intron 20.0%
!! TATTCTAAACAAAAGAACAT+TGG - chr2_4:42520099-42520118 Msa0329350:intron 20.0%
!!! AAAATGATTGCTTAATGTTT+TGG + chr2_4:42520401-42520420 None:intergenic 20.0%
!! TCATAGAAATGAAGTTATAT+TGG - chr2_4:42521800-42521819 Msa0329350:intron 20.0%
!!! GCTGTTATATTTTCTTTTTA+CGG - chr2_4:42522109-42522128 Msa0329350:intron 20.0%
!!! AGGGAAATTTTTATTAAGTA+AGG - chr2_4:42522295-42522314 Msa0329350:intron 20.0%
!!! TTTTAATATGTTTGGATTTG+CGG + chr2_4:42522531-42522550 None:intergenic 20.0%
!!! TGTTCCTTTTTTAATATGTT+TGG + chr2_4:42522539-42522558 None:intergenic 20.0%
!!! CATATCTTTATTTCAAATGT+AGG - chr2_4:42522665-42522684 Msa0329350:intron 20.0%
!!! CTTTTTGATTTTCCATTTAT+GGG + chr2_4:42522892-42522911 None:intergenic 20.0%
!!! ACTTTTTGATTTTCCATTTA+TGG + chr2_4:42522893-42522912 None:intergenic 20.0%
!!! CTTTTTATACCTTTTCTTTT+TGG + chr2_4:42523094-42523113 None:intergenic 20.0%
! AACCAAAAATATATATGGGT+AGG - chr2_4:42519004-42519023 Msa0329350:three_prime_UTR 25.0%
!! TACCTACCCATATATATTTT+TGG + chr2_4:42519009-42519028 None:intergenic 25.0%
! ATATATATGGGTAGGTAAAT+TGG - chr2_4:42519012-42519031 Msa0329350:three_prime_UTR 25.0%
!!! AAAAAAAGTACCTTCAGATT+CGG + chr2_4:42519186-42519205 None:intergenic 25.0%
! TAAAAAATGGCAGAATGAAA+AGG + chr2_4:42519233-42519252 None:intergenic 25.0%
! TTCCAATACACAGTAAAAAA+TGG + chr2_4:42519246-42519265 None:intergenic 25.0%
! ACCCTTATCATATTTATCTT+TGG + chr2_4:42519547-42519566 None:intergenic 25.0%
! TAAATTTGATTCAGACTCTT+AGG - chr2_4:42519595-42519614 Msa0329350:CDS 25.0%
! GATACATGATTGTAAAACAA+AGG + chr2_4:42519824-42519843 None:intergenic 25.0%
! TTACCAATTTACAAATGTCT+AGG + chr2_4:42519975-42519994 None:intergenic 25.0%
! GATATTCTACATTATAGAAC+TGG + chr2_4:42520424-42520443 None:intergenic 25.0%
! TTCTATAATGTAGAATATCC+AGG - chr2_4:42520425-42520444 Msa0329350:intron 25.0%
!! ATACTTTGTCCCATTAATTT+TGG + chr2_4:42520568-42520587 None:intergenic 25.0%
! TTATGTTTGATTGGATATAC+TGG - chr2_4:42520740-42520759 Msa0329350:intron 25.0%
! TATGTTTGATTGGATATACT+GGG - chr2_4:42520741-42520760 Msa0329350:intron 25.0%
! ATACTGGGTATTATAGATTA+TGG - chr2_4:42520756-42520775 Msa0329350:intron 25.0%
! TACTGGGTATTATAGATTAT+GGG - chr2_4:42520757-42520776 Msa0329350:intron 25.0%
!! GTATCCTTCTTTTTACATAT+CGG - chr2_4:42521006-42521025 Msa0329350:intron 25.0%
! AAAACCGATATGTAAAAAGA+AGG + chr2_4:42521013-42521032 None:intergenic 25.0%
!!! TTTTTACATATCGGTTTTGT+AGG - chr2_4:42521015-42521034 Msa0329350:intron 25.0%
! TACTGTCTTAAAAATTGAGT+TGG + chr2_4:42521053-42521072 None:intergenic 25.0%
!! ATCAGAACATATCTAAGATA+AGG - chr2_4:42521072-42521091 Msa0329350:intron 25.0%
!! TCAGAACATATCTAAGATAA+GGG - chr2_4:42521073-42521092 Msa0329350:intron 25.0%
! TCCTAATTATAAACACTTCT+CGG + chr2_4:42521398-42521417 None:intergenic 25.0%
!! ACAAAATCGATTTATAAGGT+GGG + chr2_4:42521467-42521486 None:intergenic 25.0%
!!! ACCTTATAAATCGATTTTGT+CGG - chr2_4:42521467-42521486 Msa0329350:intron 25.0%
!! ACCTTATAAGTCAATTTTGT+AGG - chr2_4:42521506-42521525 Msa0329350:intron 25.0%
!! GACATTTTATAATCATATGC+AGG - chr2_4:42521833-42521852 Msa0329350:intron 25.0%
! GCATTATTAGTAGTAGTATT+GGG + chr2_4:42522020-42522039 None:intergenic 25.0%
! AGCATTATTAGTAGTAGTAT+TGG + chr2_4:42522021-42522040 None:intergenic 25.0%
!! GTGATAAAAGATTTTTCTTC+TGG + chr2_4:42522048-42522067 None:intergenic 25.0%
! AAAATATAACAGCACCAAAA+AGG + chr2_4:42522102-42522121 None:intergenic 25.0%
! TATAAACAAATTCAGCAGAA+AGG + chr2_4:42522193-42522212 None:intergenic 25.0%
!!! AGACTTCTTTTGAAAAATTG+TGG - chr2_4:42522269-42522288 Msa0329350:intron 25.0%
!!! TTTTGAAAAATTGTGGATGA+GGG - chr2_4:42522276-42522295 Msa0329350:intron 25.0%
! ATTAAGTAAGGTGACATTAA+TGG - chr2_4:42522307-42522326 Msa0329350:intron 25.0%
! GACTACTTCATATAAATAAC+AGG + chr2_4:42522593-42522612 None:intergenic 25.0%
!! TTATTTATCTAGTGGTTTGT+TGG - chr2_4:42522633-42522652 Msa0329350:intron 25.0%
! ACATAGGAAATCTAAACAAA+GGG + chr2_4:42522959-42522978 None:intergenic 25.0%
! TACATAGGAAATCTAAACAA+AGG + chr2_4:42522960-42522979 None:intergenic 25.0%
!! ATATTGGTTAATATGTGTAG+TGG + chr2_4:42523257-42523276 None:intergenic 25.0%
! TTTATCATGTAAGACAAATG+TGG + chr2_4:42523285-42523304 None:intergenic 25.0%
! ACATTTGTCTTACATGATAA+AGG - chr2_4:42523284-42523303 Msa0329350:five_prime_UTR 25.0%
CTTACTACCGTAATCAAATT+CGG - chr2_4:42519040-42519059 Msa0329350:three_prime_UTR 30.0%
TTACTACCGTAATCAAATTC+GGG - chr2_4:42519041-42519060 Msa0329350:three_prime_UTR 30.0%
!! CACTTGTTTGGTTTCAATTT+TGG - chr2_4:42519110-42519129 Msa0329350:three_prime_UTR 30.0%
! TTTCAATTTTGGATCGATCA+TGG - chr2_4:42519121-42519140 Msa0329350:three_prime_UTR 30.0%
! TTCAATTTTGGATCGATCAT+GGG - chr2_4:42519122-42519141 Msa0329350:three_prime_UTR 30.0%
!!! TGCCATTTTTTACTGTGTAT+TGG - chr2_4:42519241-42519260 Msa0329350:three_prime_UTR 30.0%
!! GTTGTTTCTATAAGCTATCT+TGG - chr2_4:42519704-42519723 Msa0329350:intron 30.0%
TATAGCAATAAGCTACCAAA+AGG - chr2_4:42519733-42519752 Msa0329350:intron 30.0%
ATAGCAATAAGCTACCAAAA+GGG - chr2_4:42519734-42519753 Msa0329350:intron 30.0%
ATACGCATAAATAGATTGTC+TGG - chr2_4:42519897-42519916 Msa0329350:intron 30.0%
CAATTTACAAATGTCTAGGT+TGG + chr2_4:42519971-42519990 None:intergenic 30.0%
CAACCTAGACATTTGTAAAT+TGG - chr2_4:42519969-42519988 Msa0329350:intron 30.0%
!!! AAGCAATGTTGTTTTCAAAC+TGG - chr2_4:42520017-42520036 Msa0329350:intron 30.0%
!!! TGTTGTTTTCAAACTGGTTT+AGG - chr2_4:42520023-42520042 Msa0329350:intron 30.0%
!! TTTTCAAACTGGTTTAGGTT+GGG - chr2_4:42520028-42520047 Msa0329350:intron 30.0%
! TATCACTATCTAGTTTGACA+TGG - chr2_4:42520134-42520153 Msa0329350:intron 30.0%
!! TAGTTTTTCTAGGAATCAAG+AGG - chr2_4:42520193-42520212 Msa0329350:intron 30.0%
! ATGTCTATTGACTAGATCAT+TGG + chr2_4:42520259-42520278 None:intergenic 30.0%
TTGAATGTAGAATTCATGTC+AGG - chr2_4:42520298-42520317 Msa0329350:intron 30.0%
!!! ATTTTTAGGTTTACTGCTTG+AGG - chr2_4:42520468-42520487 Msa0329350:intron 30.0%
AAGTTGAATTTGCAGTGAAA+TGG + chr2_4:42520624-42520643 None:intergenic 30.0%
AATACACCGATGATTCAAAA+GGG + chr2_4:42520666-42520685 None:intergenic 30.0%
GTGATTGCTTTATGTTTGAT+TGG - chr2_4:42520731-42520750 Msa0329350:intron 30.0%
GATAATAGTCTGCTGTTATA+AGG - chr2_4:42520817-42520836 Msa0329350:intron 30.0%
!!! CTGCTTTGAAATACATTTTC+AGG + chr2_4:42520983-42521002 None:intergenic 30.0%
CTGAAAATGTATTTCAAAGC+AGG - chr2_4:42520981-42521000 Msa0329350:intron 30.0%
AAAATGTATTTCAAAGCAGG+AGG - chr2_4:42520984-42521003 Msa0329350:intron 30.0%
TGAAGTTGTATGTGTTGTAA+GGG - chr2_4:42521114-42521133 Msa0329350:intron 30.0%
!! TCCGAGAAGTGTTTATAATT+AGG - chr2_4:42521394-42521413 Msa0329350:intron 30.0%
!! GAGAAGTGTTTATAATTAGG+AGG - chr2_4:42521397-42521416 Msa0329350:intron 30.0%
!! ACCTTATAAGTCGATTTTGT+CGG - chr2_4:42521428-42521447 Msa0329350:intron 30.0%
! GACAAAATCGATTTATAAGG+TGG + chr2_4:42521468-42521487 None:intergenic 30.0%
!! CCTTATAAATCGATTTTGTC+GGG - chr2_4:42521468-42521487 Msa0329350:intron 30.0%
! GCCTACAAAATTGACTTATA+AGG + chr2_4:42521510-42521529 None:intergenic 30.0%
! CAATTTTGTAGGCTTAAGTT+AGG - chr2_4:42521517-42521536 Msa0329350:intron 30.0%
TATCCCAATCTTAGAAGTTT+GGG + chr2_4:42521548-42521567 None:intergenic 30.0%
ATATCCCAATCTTAGAAGTT+TGG + chr2_4:42521549-42521568 None:intergenic 30.0%
! ACATAAGTCAGATTCTAAGA+TGG + chr2_4:42521673-42521692 None:intergenic 30.0%
! AAGCCTTATAAAGATTACGT+TGG - chr2_4:42521737-42521756 Msa0329350:intron 30.0%
! ATTTGGTATCAGATCCTTTT+TGG - chr2_4:42522085-42522104 Msa0329350:intron 30.0%
!! CTTTTGAAAAATTGTGGATG+AGG - chr2_4:42522275-42522294 Msa0329350:intron 30.0%
! ATTTTTACAAACCATCCTTG+AGG - chr2_4:42522332-42522351 Msa0329350:intron 30.0%
! TTTTTACAAACCATCCTTGA+GGG - chr2_4:42522333-42522352 Msa0329350:intron 30.0%
CAGCAAGTTTAACAAAATCA+CGG - chr2_4:42522428-42522447 Msa0329350:intron 30.0%
TTGGAGATTTAACAAAACCA+CGG + chr2_4:42522459-42522478 None:intergenic 30.0%
TGTTGAGGTTATTTATCTAG+TGG - chr2_4:42522625-42522644 Msa0329350:intron 30.0%
!! TAGTGGTTTGTTGGTATTTA+TGG - chr2_4:42522642-42522661 Msa0329350:intron 30.0%
!! TAGGATTTTCAAGAATTGTC+CGG - chr2_4:42522684-42522703 Msa0329350:intron 30.0%
! GTTTTTCTCTGATCTGTTAT+CGG - chr2_4:42522767-42522786 Msa0329350:intron 30.0%
TTTGTCAAAGCTTGGAATAA+AGG - chr2_4:42522816-42522835 Msa0329350:intron 30.0%
CTTGAATCGAATTACTATGA+AGG - chr2_4:42522843-42522862 Msa0329350:intron 30.0%
AACAAAGGGTTTATAGAGAT+TGG + chr2_4:42522945-42522964 None:intergenic 30.0%
GTTGTTAGTAACTGTTACAT+AGG + chr2_4:42522975-42522994 None:intergenic 30.0%
GTATCAATCTTTAAGTGTGT+TGG - chr2_4:42523056-42523075 Msa0329350:intron 30.0%
AAGGTATAAAAAGCAGAGAA+TGG - chr2_4:42523101-42523120 Msa0329350:intron 30.0%
TATAAAAAGCAGAGAATGGA+TGG - chr2_4:42523105-42523124 Msa0329350:intron 30.0%
AAAAAAAAAATGGGGGATTC+AGG - chr2_4:42523144-42523163 Msa0329350:intron 30.0%
TGATTCACATAAAGACACAA+GGG + chr2_4:42523207-42523226 None:intergenic 30.0%
TACTACCGTAATCAAATTCG+GGG - chr2_4:42519042-42519061 Msa0329350:three_prime_UTR 35.0%
TTGTTCCCCGAATTTGATTA+CGG + chr2_4:42519050-42519069 None:intergenic 35.0%
! AACTGTAGATGATGATGATG+AGG - chr2_4:42519467-42519486 Msa0329350:CDS 35.0%
AGAGGGAAAAGAAAGAGAAA+AGG - chr2_4:42519505-42519524 Msa0329350:CDS 35.0%
GGAAAAGAAAGAGAAAAGGA+AGG - chr2_4:42519509-42519528 Msa0329350:CDS 35.0%
!! GTTTTCAAACTGGTTTAGGT+TGG - chr2_4:42520027-42520046 Msa0329350:intron 35.0%
!! TTTCAAACTGGTTTAGGTTG+GGG - chr2_4:42520029-42520048 Msa0329350:intron 35.0%
! CAAAAGAACATTGGTACTGA+AGG - chr2_4:42520108-42520127 Msa0329350:intron 35.0%
! ACTATCTAGTTTGACATGGA+GGG - chr2_4:42520138-42520157 Msa0329350:intron 35.0%
! TGGGAGTTTGAACTTTTGTA+AGG - chr2_4:42520164-42520183 Msa0329350:intron 35.0%
!!! AAGGCTATGCTAGTTTTTCT+AGG - chr2_4:42520183-42520202 Msa0329350:intron 35.0%
TTTATAGGTATTTGCAAGCC+TGG + chr2_4:42520446-42520465 None:intergenic 35.0%
GAGCAAGGAAAAAACATGAA+AGG - chr2_4:42520495-42520514 Msa0329350:intron 35.0%
! TGGGACAAAGTATCTGTATA+AGG - chr2_4:42520575-42520594 Msa0329350:intron 35.0%
ATGATTCAAAAGGGAAAGAC+AGG + chr2_4:42520657-42520676 None:intergenic 35.0%
! GTCTTTCCCTTTTGAATCAT+CGG - chr2_4:42520657-42520676 Msa0329350:intron 35.0%
CAATACACCGATGATTCAAA+AGG + chr2_4:42520667-42520686 None:intergenic 35.0%
AAACCAATCATTTCACTCCA+TGG - chr2_4:42520700-42520719 Msa0329350:intron 35.0%
! AGCAATCACTAATTTTGCCA+TGG + chr2_4:42520720-42520739 None:intergenic 35.0%
GGTATTATAGATTATGGGTC+AGG - chr2_4:42520762-42520781 Msa0329350:intron 35.0%
ATTTGCAAGACTACACACAT+AGG - chr2_4:42520908-42520927 Msa0329350:intron 35.0%
GTGAAGTTGTATGTGTTGTA+AGG - chr2_4:42521113-42521132 Msa0329350:intron 35.0%
AGCCTCTTGTGTAAAAAACT+GGG - chr2_4:42521159-42521178 Msa0329350:intron 35.0%
!!! TACCCAGTTTTTTACACAAG+AGG + chr2_4:42521164-42521183 None:intergenic 35.0%
CTTGTGTAAAAAACTGGGTA+AGG - chr2_4:42521164-42521183 Msa0329350:intron 35.0%
CTTACAGTATACCAAATGGT+GGG - chr2_4:42521190-42521209 Msa0329350:intron 35.0%
TGATAAAAAAAAAGGGCAGC+CGG + chr2_4:42521255-42521274 None:intergenic 35.0%
TCTGTTATGCTACTCATGAT+CGG - chr2_4:42521289-42521308 Msa0329350:intron 35.0%
!! CCTTATAAGTCGATTTTGTC+GGG - chr2_4:42521429-42521448 Msa0329350:intron 35.0%
! CCCGACAAAATCGATTTATA+AGG + chr2_4:42521471-42521490 None:intergenic 35.0%
!! TCAACCCAAACTTCTAAGAT+TGG - chr2_4:42521541-42521560 Msa0329350:intron 35.0%
!! CAACCCAAACTTCTAAGATT+GGG - chr2_4:42521542-42521561 Msa0329350:intron 35.0%
! TCTAGGACGTACTATGATAA+AGG - chr2_4:42521595-42521614 Msa0329350:intron 35.0%
! CTCATTGAGCTAACTTTTGA+GGG + chr2_4:42521704-42521723 None:intergenic 35.0%
! ACTCATTGAGCTAACTTTTG+AGG + chr2_4:42521705-42521724 None:intergenic 35.0%
AAAGTTAGCTCAATGAGTGA+AGG - chr2_4:42521707-42521726 Msa0329350:intron 35.0%
TGGCCAACGTAATCTTTATA+AGG + chr2_4:42521743-42521762 None:intergenic 35.0%
CAGCAAAAGTGAAAGAAACA+TGG - chr2_4:42521977-42521996 Msa0329350:intron 35.0%
! TTAGTAGTAGTATTGGGAGT+GGG + chr2_4:42522014-42522033 None:intergenic 35.0%
! ATTAGTAGTAGTATTGGGAG+TGG + chr2_4:42522015-42522034 None:intergenic 35.0%
TTCTTGCCATGCTGAATATT+TGG - chr2_4:42522068-42522087 Msa0329350:intron 35.0%
CTGATACCAAATATTCAGCA+TGG + chr2_4:42522077-42522096 None:intergenic 35.0%
! AACTGACAGTTCAAGAGTAT+AGG - chr2_4:42522231-42522250 Msa0329350:intron 35.0%
! TTTTACAAACCATCCTTGAG+GGG - chr2_4:42522334-42522353 Msa0329350:intron 35.0%
! TTTTCGCAAAAGCTATGCTT+TGG + chr2_4:42522478-42522497 None:intergenic 35.0%
GGTAGCAAACTCATTATTCT+TGG + chr2_4:42522724-42522743 None:intergenic 35.0%
!! AGAATAATGAGTTTGCTACC+TGG - chr2_4:42522724-42522743 Msa0329350:intron 35.0%
TTGCAGAATTTGTCAAAGCT+TGG - chr2_4:42522808-42522827 Msa0329350:intron 35.0%
CATAAAGACACAAGGGAAAT+TGG + chr2_4:42523200-42523219 None:intergenic 35.0%
CTGATTCACATAAAGACACA+AGG + chr2_4:42523208-42523227 None:intergenic 35.0%
CAGATGAGAAGAAAAGCAAG+AGG - chr2_4:42519439-42519458 Msa0329350:exon 40.0%
AGGAAAAGAAGAGCAGAAAG+AGG - chr2_4:42519487-42519506 Msa0329350:CDS 40.0%
GGAAAAGAAGAGCAGAAAGA+GGG - chr2_4:42519488-42519507 Msa0329350:CDS 40.0%
TACAATCATGTATCAGCTGC+AGG - chr2_4:42519830-42519849 Msa0329350:intron 40.0%
AGGAGTTAGTTAGAAGTCGT+TGG - chr2_4:42519850-42519869 Msa0329350:intron 40.0%
! CACTATCTAGTTTGACATGG+AGG - chr2_4:42520137-42520156 Msa0329350:intron 40.0%
TCTAGGAATCAAGAGGATAC+TGG - chr2_4:42520200-42520219 Msa0329350:intron 40.0%
AATTTGCAGTGAAATGGCAC+AGG + chr2_4:42520618-42520637 None:intergenic 40.0%
CAAAAGGGAAAGACAGGAAT+AGG + chr2_4:42520651-42520670 None:intergenic 40.0%
TTGCCATGGAGTGAAATGAT+TGG + chr2_4:42520706-42520725 None:intergenic 40.0%
TAACCCTAAAAGCAAGCTCA+AGG - chr2_4:42520791-42520810 Msa0329350:intron 40.0%
!! ACTCCTTGAGCTTGCTTTTA+GGG + chr2_4:42520797-42520816 None:intergenic 40.0%
CTGCTGTTATAAGGTCTACT+TGG - chr2_4:42520826-42520845 Msa0329350:intron 40.0%
CTTTACATGTCCTATCCTAG+AGG + chr2_4:42520882-42520901 None:intergenic 40.0%
!! CGGTTTTGTAGGATTGAGTT+AGG - chr2_4:42521026-42521045 Msa0329350:intron 40.0%
TTGTATGTGTTGTAAGGGCA+TGG - chr2_4:42521119-42521138 Msa0329350:intron 40.0%
! TGTATGTGTTGTAAGGGCAT+GGG - chr2_4:42521120-42521139 Msa0329350:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+TGG - chr2_4:42521158-42521177 Msa0329350:intron 40.0%
GCTGCTTACAGTATACCAAA+TGG - chr2_4:42521186-42521205 Msa0329350:intron 40.0%
GCTTACAGTATACCAAATGG+TGG - chr2_4:42521189-42521208 Msa0329350:intron 40.0%
CTGTTATGCTACTCATGATC+GGG - chr2_4:42521290-42521309 Msa0329350:intron 40.0%
ATTCTCCAAATGTCCAGTCT+TGG - chr2_4:42521319-42521338 Msa0329350:intron 40.0%
GTTCCCCATTCAATGAGATA+TGG - chr2_4:42521371-42521390 Msa0329350:intron 40.0%
GGACCATATCTCATTGAATG+GGG + chr2_4:42521377-42521396 None:intergenic 40.0%
CGGACCATATCTCATTGAAT+GGG + chr2_4:42521378-42521397 None:intergenic 40.0%
TCGGACCATATCTCATTGAA+TGG + chr2_4:42521379-42521398 None:intergenic 40.0%
! CCCGACAAAATCGACTTATA+AGG + chr2_4:42521432-42521451 None:intergenic 40.0%
! CGATTTTGTCGGGTTAAGTT+AGG - chr2_4:42521439-42521458 Msa0329350:intron 40.0%
! CGATTTTGTCGGGTTAAGTT+AGG - chr2_4:42521439-42521458 Msa0329350:intron 40.0%
AGCTACACTGAAGGTAATCT+AGG - chr2_4:42521578-42521597 Msa0329350:intron 40.0%
AGGACGTACTATGATAAAGG+AGG - chr2_4:42521598-42521617 Msa0329350:intron 40.0%
TCTTACATTGACCAGTGATG+TGG + chr2_4:42521763-42521782 None:intergenic 40.0%
AAAGGCAACACTGGTAAAAC+AGG + chr2_4:42522175-42522194 None:intergenic 40.0%
TCTATGAGATGCTAGCTCAA+TGG + chr2_4:42522373-42522392 None:intergenic 40.0%
TTGAAGACTCCGTGTATGTT+TGG - chr2_4:42522400-42522419 Msa0329350:intron 40.0%
GCTGTGATTCCAAACATACA+CGG + chr2_4:42522412-42522431 None:intergenic 40.0%
CGGTGAGTTTGATAGAATCA+AGG + chr2_4:42522511-42522530 None:intergenic 40.0%
GTCAGAAACTGTGATTGTTG+AGG - chr2_4:42522610-42522629 Msa0329350:intron 40.0%
CTTGGCAAAATAGTCATCAC+CGG + chr2_4:42522706-42522725 None:intergenic 40.0%
ATTCTTCTCTTCTTTCAGCC+AGG + chr2_4:42522745-42522764 None:intergenic 40.0%
!! TTAAGTGTGTTGGTTGTTCG+CGG - chr2_4:42523066-42523085 Msa0329350:intron 40.0%
! GGTTATGATTTGCAGAGTGA+CGG - chr2_4:42523165-42523184 Msa0329350:CDS 40.0%
GACAAATGTGGCACACATAT+TGG + chr2_4:42523273-42523292 None:intergenic 40.0%
ATTCGGGGAACAAACCTTGA+AGG - chr2_4:42519057-42519076 Msa0329350:three_prime_UTR 45.0%
TCTGCTAACACAATCACCTG+AGG + chr2_4:42519089-42519108 None:intergenic 45.0%
! GTGTTAGCAGAGCACTTGTT+TGG - chr2_4:42519098-42519117 Msa0329350:three_prime_UTR 45.0%
! ACTACTGACACAAGCCCTTT+TGG + chr2_4:42519751-42519770 None:intergenic 45.0%
TAGTTTGACATGGAGGGTCT+TGG - chr2_4:42520144-42520163 Msa0329350:intron 45.0%
AGTTTGACATGGAGGGTCTT+GGG - chr2_4:42520145-42520164 Msa0329350:intron 45.0%
! GAATCAAGAGGATACTGGCT+AGG - chr2_4:42520205-42520224 Msa0329350:intron 45.0%
! TAGACTAACTGCAGGGGTTT+TGG - chr2_4:42520228-42520247 Msa0329350:intron 45.0%
! AGACTAACTGCAGGGGTTTT+GGG - chr2_4:42520229-42520248 Msa0329350:intron 45.0%
!!! ACTGCTTGAGGTTTTGAGCA+AGG - chr2_4:42520480-42520499 Msa0329350:intron 45.0%
!! CACTCCTTGAGCTTGCTTTT+AGG + chr2_4:42520798-42520817 None:intergenic 45.0%
! CAACATGCCATTTCACCTCT+AGG - chr2_4:42520864-42520883 Msa0329350:intron 45.0%
!! TGCCATTTCACCTCTAGGAT+AGG - chr2_4:42520869-42520888 Msa0329350:intron 45.0%
GTCCTATCCTAGAGGTGAAA+TGG + chr2_4:42520874-42520893 None:intergenic 45.0%
AGGTGTGGAGAGTCTCATAT+TGG - chr2_4:42520946-42520965 Msa0329350:intron 45.0%
! TCTAAGATAAGGGAGAGCCT+TGG - chr2_4:42521083-42521102 Msa0329350:intron 45.0%
GCTTCTAGTAGCTACACTGA+AGG - chr2_4:42521569-42521588 Msa0329350:intron 45.0%
AGGAGGTTACGATTCCGATA+TGG - chr2_4:42521615-42521634 Msa0329350:intron 45.0%
GGTACCAATGTTTGCAGTCT+GGG + chr2_4:42521652-42521671 None:intergenic 45.0%
TGGTACCAATGTTTGCAGTC+TGG + chr2_4:42521653-42521672 None:intergenic 45.0%
GCAACACTGGTAAAACAGGA+TGG + chr2_4:42522171-42522190 None:intergenic 45.0%
ATTCAGCAGAAAGGCAACAC+TGG + chr2_4:42522184-42522203 None:intergenic 45.0%
TGAGATGCTAGCTCAATGGA+CGG + chr2_4:42522369-42522388 None:intergenic 45.0%
AGTGTGCCTGTTGTGTGAAT+CGG - chr2_4:42523226-42523245 Msa0329350:five_prime_UTR 45.0%
!! AACAAAAAAAAAAAAAAAAA+TGG - chr2_4:42523134-42523153 Msa0329350:intron 5.0%
!! ACAAAAAAAAAAAAAAAAAT+GGG - chr2_4:42523135-42523154 Msa0329350:intron 5.0%
ACCTTGAAGGCTTGAACCTC+AGG - chr2_4:42519070-42519089 Msa0329350:three_prime_UTR 50.0%
ACCTGAGGTTCAAGCCTTCA+AGG + chr2_4:42519074-42519093 None:intergenic 50.0%
CCTTCAGATTCGGATTGCGA+AGG + chr2_4:42519176-42519195 None:intergenic 50.0%
CCTTCGCAATCCGAATCTGA+AGG - chr2_4:42519173-42519192 Msa0329350:three_prime_UTR 50.0%
TGGCTAGGTAGACTAACTGC+AGG - chr2_4:42520220-42520239 Msa0329350:intron 50.0%
GGCTAGGTAGACTAACTGCA+GGG - chr2_4:42520221-42520240 Msa0329350:intron 50.0%
GCTAGGTAGACTAACTGCAG+GGG - chr2_4:42520222-42520241 Msa0329350:intron 50.0%
GAAATGGCACAGGACAAGGA+TGG + chr2_4:42520608-42520627 None:intergenic 50.0%
CAGTGAAATGGCACAGGACA+AGG + chr2_4:42520612-42520631 None:intergenic 50.0%
TACACACATAGGTTGCCCGA+CGG - chr2_4:42520919-42520938 Msa0329350:intron 50.0%
ACAAAGCTCCCACATACGCA+GGG + chr2_4:42521229-42521248 None:intergenic 50.0%
! TATGTGGGAGCTTTGTGCAC+CGG - chr2_4:42521233-42521252 Msa0329350:intron 50.0%
CACGTCCAAGACTGGACATT+TGG + chr2_4:42521327-42521346 None:intergenic 50.0%
AATGTCCAGTCTTGGACGTG+AGG - chr2_4:42521327-42521346 Msa0329350:intron 50.0%
GGGAGACTCTGCTTCCATAT+CGG + chr2_4:42521632-42521651 None:intergenic 50.0%
GTCTCCCAGACTGCAAACAT+TGG - chr2_4:42521645-42521664 Msa0329350:intron 50.0%
GATTACGTTGGCCACATCAC+TGG - chr2_4:42521749-42521768 Msa0329350:intron 50.0%
GAACTGTCAGTTGCAGCATG+TGG + chr2_4:42522223-42522242 None:intergenic 50.0%
AGTTCGAATCCCCTCAAGGA+TGG + chr2_4:42522346-42522365 None:intergenic 50.0%
!! ACAAAATCACGGTGTCACCG+TGG - chr2_4:42522439-42522458 Msa0329350:intron 50.0%
! TTCCATTTATGGGCTGTGCG+AGG + chr2_4:42522882-42522901 None:intergenic 50.0%
TTCGCGGCGCCAAAAAGAAA+AGG - chr2_4:42523082-42523101 Msa0329350:intron 50.0%
GCCTGTTGTGTGAATCGGTA+AGG - chr2_4:42523231-42523250 Msa0329350:five_prime_UTR 50.0%
!! GCCTTACCGATTCACACAAC+AGG + chr2_4:42523235-42523254 None:intergenic 50.0%
ATAGGTTGCCCGACGGATCT+AGG - chr2_4:42520926-42520945 Msa0329350:intron 55.0%
TCTCCACACCTAGATCCGTC+GGG + chr2_4:42520937-42520956 None:intergenic 55.0%
CTCTCCACACCTAGATCCGT+CGG + chr2_4:42520938-42520957 None:intergenic 55.0%
ACAACTTCACCGTTGCGCCA+AGG + chr2_4:42521103-42521122 None:intergenic 55.0%
ACATACGCAGGGTCTGGCAA+GGG + chr2_4:42521218-42521237 None:intergenic 55.0%
TTGCCAGACCCTGCGTATGT+GGG - chr2_4:42521218-42521237 Msa0329350:intron 55.0%
CACAAAGCTCCCACATACGC+AGG + chr2_4:42521230-42521249 None:intergenic 55.0%
TCCAGTCTTGGACGTGAGGA+TGG - chr2_4:42521331-42521350 Msa0329350:intron 55.0%
ACCATCCTCACGTCCAAGAC+TGG + chr2_4:42521335-42521354 None:intergenic 55.0%
ACGGAGTTCGAATCCCCTCA+AGG + chr2_4:42522350-42522369 None:intergenic 55.0%
TTGCCCGACGGATCTAGGTG+TGG - chr2_4:42520931-42520950 Msa0329350:intron 60.0%
AAGGGAGAGCCTTGGCGCAA+CGG - chr2_4:42521091-42521110 Msa0329350:intron 60.0%
TGGCAAGGGGTCCCACCATT+TGG + chr2_4:42521204-42521223 None:intergenic 60.0%
CATACGCAGGGTCTGGCAAG+GGG + chr2_4:42521217-42521236 None:intergenic 60.0%
CACATACGCAGGGTCTGGCA+AGG + chr2_4:42521219-42521238 None:intergenic 60.0%
CTTGCCAGACCCTGCGTATG+TGG - chr2_4:42521217-42521236 Msa0329350:intron 60.0%
CGCCTCGCACAGCCCATAAA+TGG - chr2_4:42522877-42522896 Msa0329350:intron 60.0%
GCTCCCACATACGCAGGGTC+TGG + chr2_4:42521224-42521243 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 42518995 42523363 42518995 ID=Msa0329350;Name=Msa0329350
chr2_4 mRNA 42518995 42523363 42518995 ID=Msa0329350-mRNA-1;Parent=Msa0329350;Name=Msa0329350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=145|0.5|1|1|1|1|3|449|112
chr2_4 exon 42518995 42519671 42518995 ID=Msa0329350-mRNA-1:exon:13148;Parent=Msa0329350-mRNA-1
chr2_4 exon 42520360 42520415 42520360 ID=Msa0329350-mRNA-1:exon:13147;Parent=Msa0329350-mRNA-1
chr2_4 exon 42523164 42523363 42523164 ID=Msa0329350-mRNA-1:exon:13146;Parent=Msa0329350-mRNA-1
chr2_4 five_prime_UTR 42523219 42523363 42523219 ID=Msa0329350-mRNA-1:five_prime_utr;Parent=Msa0329350-mRNA-1
chr2_4 CDS 42523164 42523218 42523164 ID=Msa0329350-mRNA-1:cds;Parent=Msa0329350-mRNA-1
chr2_4 CDS 42520360 42520415 42520360 ID=Msa0329350-mRNA-1:cds;Parent=Msa0329350-mRNA-1
chr2_4 CDS 42519444 42519671 42519444 ID=Msa0329350-mRNA-1:cds;Parent=Msa0329350-mRNA-1
chr2_4 three_prime_UTR 42518995 42519443 42518995 ID=Msa0329350-mRNA-1:three_prime_utr;Parent=Msa0329350-mRNA-1
Gene Sequence

>Msa0329350

ATGGGAAGCGATCGAAAATCAAAGAGAAGTTATCCTTCGCAATCCGAATCTGAAGATAAGAAGTTAAAAGACAAGCACAAAAGTAAACGCAGCAAAAGTGAAAGAAACATGGATTTTCAAGAATTGTCCGGTGATGACTATTTTGCCAAGAATAATGAGTTTGCTACCTGGCTGAAAGAAGAGAAGAATGTGTTTTTCTCTGATCTGTTATCGGAGTCAGCACGTGAGTTGTTTGCAGAATTTGTCAAAGCTTGGAATAAAGGAAAGCTTGAATCGAATTACTATGAAGGCATTAAAACTGCGCCTCGCACAGCCCATAAATGGAAAATCAAAAAGTAG

Protein sequence

>Msa0329350

MGSDRKSKRSYPSQSESEDKKLKDKHKSKRSKSERNMDFQELSGDDYFAKNNEFATWLKEEKNVFFSDLLSESARELFAEFVKAWNKGKLESNYYEGIKTAPRTAHKWKIKK*