AlfalfaGEDB | Msa0015610

M. sativa cultivar zhongmu-4 / Msa0015610

KEGG: K12837
GO: GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006913 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032239 GO:0032241 GO:0032386 GO:0032388 GO:0032879 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046822 GO:0046824 GO:0046831 GO:0046833 GO:0046907 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001240	Msa0015610	0.801593	8.369909e-49	-8.615850e-47
Msa0003890	Msa0015610	0.839094	1.946243e-57	-8.615850e-47
Msa0004920	Msa0015610	0.818576	1.823759e-52	-8.615850e-47
Msa0006070	Msa0015610	0.827616	1.417690e-54	-8.615850e-47
Msa0006110	Msa0015610	0.825328	4.975906e-54	-8.615850e-47
Msa0007440	Msa0015610	0.820401	6.992779e-53	-8.615850e-47
Msa0011170	Msa0015610	0.836453	9.277359e-57	-8.615850e-47
Msa0011960	Msa0015610	0.821768	3.387618e-53	-8.615850e-47
Msa0012040	Msa0015610	0.801044	1.084297e-48	-8.615850e-47
Msa0014710	Msa0015610	0.811374	7.228389e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015610	MtrunA17_Chr1g0166661	93.231	325	18	1	1	321	747	1071	0.0	611

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015610	AT2G33435.1	57.778	90	38	0	1	90	1051	1140	1.59e-27	113

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Find 81 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGAAGTCAAAACATT+AGG	0.418210	1_1:+25188507	None:intergenic
AAACACGGTTCGTCCATTTC+AGG	0.343902	1_1:-25189046	Msa0015610:CDS
AAAGCTTGTGCGGGTTTGAA+TGG	0.460255	1_1:-25190965	Msa0015610:five_prime_UTR
AAAGTGTTAAAATGATTGAT+TGG	0.348416	1_1:-25191448	Msa0015610:five_prime_UTR
AACAGATTAATTAGTCAGAT+TGG	0.398603	1_1:-25188719	Msa0015610:three_prime_UTR
AAGTGTTAAAATGATTGATT+GGG	0.433991	1_1:-25191447	Msa0015610:five_prime_UTR
AATGAGCATTTCAAATTGAG+TGG	0.531396	1_1:-25188792	Msa0015610:exon
ACAGGTGGAATGGAGTTCCA+TGG	0.613269	1_1:-25189339	Msa0015610:CDS
ACAGTGTGTGTGTCTGGAGT+AGG	0.604688	1_1:+25189420	None:intergenic
ACCATGCTATCATGTAACTC+TGG	0.559494	1_1:+25189120	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTGTCTCTTTCCAATTCA+TGG	-	chr1_1:25188815-25188834	Msa0015610:CDS	30.0%
TTGGTGCATTAACTGAATAT+GGG	-	chr1_1:25188871-25188890	Msa0015610:CDS	30.0%
AACCATTAGAAAGGATTTAG+AGG	+	chr1_1:25189464-25189483	None:intergenic	30.0%
AATAACACTGATGTATGGTA+TGG	+	chr1_1:25189768-25189787	None:intergenic	30.0%
GTTGTGGATTTAGTATGAAA+AGG	-	chr1_1:25189823-25189842	Msa0015610:intron	30.0%
AATACCGTCGTTAGTTAAAT+TGG	-	chr1_1:25189915-25189934	Msa0015610:intron	30.0%
ACATCCAATTTAACTAACGA+CGG	+	chr1_1:25189922-25189941	None:intergenic	30.0%
TCTATCATCTTTATCTGACA+CGG	-	chr1_1:25189999-25190018	Msa0015610:intron	30.0%
GAAGAAGACAAAGATAATGA+TGG	-	chr1_1:25190369-25190388	Msa0015610:intron	30.0%
AATGAGCATTTCAAATTGAG+TGG	-	chr1_1:25190880-25190899	Msa0015610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	25188220	25191474	25188220	ID=Msa0015610;Name=Msa0015610
chr1_1	mRNA	25188220	25191474	25188220	ID=Msa0015610-mRNA-1;Parent=Msa0015610;Name=Msa0015610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=83\|1\|1\|1\|0.6\|0.5\|6\|553\|321
chr1_1	exon	25188220	25188467	25188220	ID=Msa0015610-mRNA-1:exon:8748;Parent=Msa0015610-mRNA-1
chr1_1	exon	25188505	25189542	25188505	ID=Msa0015610-mRNA-1:exon:8747;Parent=Msa0015610-mRNA-1
chr1_1	exon	25189630	25189709	25189630	ID=Msa0015610-mRNA-1:exon:8746;Parent=Msa0015610-mRNA-1
chr1_1	exon	25190681	25190773	25190681	ID=Msa0015610-mRNA-1:exon:8745;Parent=Msa0015610-mRNA-1
chr1_1	exon	25190904	25191011	25190904	ID=Msa0015610-mRNA-1:exon:8744;Parent=Msa0015610-mRNA-1
chr1_1	exon	25191440	25191474	25191440	ID=Msa0015610-mRNA-1:exon:8743;Parent=Msa0015610-mRNA-1
chr1_1	five_prime_UTR	25191440	25191474	25191440	ID=Msa0015610-mRNA-1:five_prime_utr;Parent=Msa0015610-mRNA-1
chr1_1	five_prime_UTR	25190964	25191011	25190964	ID=Msa0015610-mRNA-1:five_prime_utr;Parent=Msa0015610-mRNA-1
chr1_1	CDS	25190904	25190963	25190904	ID=Msa0015610-mRNA-1:cds;Parent=Msa0015610-mRNA-1
chr1_1	CDS	25190681	25190773	25190681	ID=Msa0015610-mRNA-1:cds;Parent=Msa0015610-mRNA-1
chr1_1	CDS	25189630	25189709	25189630	ID=Msa0015610-mRNA-1:cds;Parent=Msa0015610-mRNA-1
chr1_1	CDS	25188810	25189542	25188810	ID=Msa0015610-mRNA-1:cds;Parent=Msa0015610-mRNA-1
chr1_1	three_prime_UTR	25188505	25188809	25188505	ID=Msa0015610-mRNA-1:three_prime_utr;Parent=Msa0015610-mRNA-1
chr1_1	three_prime_UTR	25188220	25188467	25188220	ID=Msa0015610-mRNA-1:three_prime_utr;Parent=Msa0015610-mRNA-1

Gene Sequence

>Msa0015610

ATGAGCCTGGGAGGGGAAGTATTAACAGTTGTTCAGGCTATGCCTGATGCATCACCTGTGGAAAATGATAGTAAACCACCATCTTATGGCATTCCAGAGCATGCAAAGCCACTGCTCAAAGAGCCAACACAAGTACTGGAGATTAAAAATGTGTTCACAGTGGAGTCTCTATCATCTTTATCTGACACGGGAATCGAAGAAATTTTGGAGGATGTACGATTGGAATGTGCAAGATTTGGGACCGTTAAATCAATTCATGTGGCCAGACATTGCAAGGACAATAATTTAGCAACCAAATCAGAAGAAGTTAAAAAGAAAGTAGGTTCCGAAGAACCTACTCCAGACACACACACTGTTACTAATGATGCTGAATCTAGTTTCTCTGAAGAGGCTACTTACTCCAATTCTAAAGGAACAGGTGGAATGGAGTTCCATGGTGACAAAGTGCTCGAAGAAGACAAAGATAATGATGGTACTAGTGTTAATGTTGATAAAAATGCTGAAGTTTTTGATAATACCACATGTCAAGAGCATCTTGTGATTGATTCAACAGTAATAGATGCTGGCAATGAAGATTTGCCTAGTAGTACCATTCAAGGATGTCCTGATCAGGGGAATACACCTAATGATGATCCAGAGTTACATGATAGCATGGTTGCTAACGATATTGATGTTGAAAAGACAATGGGTGTCAATACAGACTCAGAAAACACGGTTCGTCCATTTCAGGAGGGCTTTTCTGGATGTGATGCCAGTTTAGAATTAGTTGGTTCCAGAAAGGACATTAAGGAAGAAGATGATACTTATAATCATGTATTTGAAGAAGGTTCCGTTCTTGTTGAGTACGCAAGATCCGAAGCATGTCGATCAGCAGCTCATTGTTTGCATAGACGTCTCTTTGACGGCAGAATGGTGTCAGTTCAGTATGTTGCTCTGAGTCTATACAGAGAAAGGTTTACAAAATGA

Protein sequence

>Msa0015610

MSLGGEVLTVVQAMPDASPVENDSKPPSYGIPEHAKPLLKEPTQVLEIKNVFTVESLSSLSDTGIEEILEDVRLECARFGTVKSIHVARHCKDNNLATKSEEVKKKVGSEEPTPDTHTVTNDAESSFSEEATYSNSKGTGGMEFHGDKVLEEDKDNDGTSVNVDKNAEVFDNTTCQEHLVIDSTVIDAGNEDLPSSTIQGCPDQGNTPNDDPELHDSMVANDIDVEKTMGVNTDSENTVRPFQEGFSGCDASLELVGSRKDIKEEDDTYNHVFEEGSVLVEYARSEACRSAAHCLHRRLFDGRMVSVQYVALSLYRERFTK*