AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015610 MtrunA17_Chr1g0166661 93.231 325 18 1 1 321 747 1071 0.0 611
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015610 AT2G33435.1 57.778 90 38 0 1 90 1051 1140 1.59e-27 113

Find 81 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCCTTAATGTCCTTTC+TGG 0.074338 1_1:+25188981 None:intergenic
CACGGGAATCGAAGAAATTT+TGG 0.222977 1_1:-25189655 Msa0015610:CDS
TCCACCTGTTCCTTTAGAAT+TGG 0.321515 1_1:+25189353 None:intergenic
AGCAGTGGCTTTGCATGCTC+TGG 0.328489 1_1:+25190718 None:intergenic
AAACACGGTTCGTCCATTTC+AGG 0.343902 1_1:-25189046 Msa0015610:CDS
AAAGTGTTAAAATGATTGAT+TGG 0.348416 1_1:-25191448 Msa0015610:five_prime_UTR
TGTAGTAGCATAATCAAGTT+TGG 0.350096 1_1:-25188586 Msa0015610:three_prime_UTR
GGAAGTATTAACAGTTGTTC+AGG 0.353180 1_1:-25190927 Msa0015610:CDS
GATAGTAAACCACCATCTTA+TGG 0.353960 1_1:-25190745 Msa0015610:CDS
CCAGAAAAGCCCTCCTGAAA+TGG 0.361049 1_1:+25189033 None:intergenic
TGGTTCCAGAAAGGACATTA+AGG 0.366182 1_1:-25188986 Msa0015610:CDS
GGAACCAACTAATTCTAAAC+TGG 0.370521 1_1:+25189002 None:intergenic
ATTATTGTCCTTGCAATGTC+TGG 0.382246 1_1:+25189491 None:intergenic
AACAGATTAATTAGTCAGAT+TGG 0.398603 1_1:-25188719 Msa0015610:three_prime_UTR
GTAATTAAAGACTATACGTT+TGG 0.400201 1_1:+25188440 None:intergenic
TGTAACTCTGGATCATCATT+AGG 0.413072 1_1:+25189132 None:intergenic
AAAACCGAAGTCAAAACATT+AGG 0.418210 1_1:+25188507 None:intergenic
CTCTGAGTCTATACAGAGAA+AGG 0.429603 1_1:-25188822 Msa0015610:CDS
TTAGTAACAGTGTGTGTGTC+TGG 0.432948 1_1:+25189414 None:intergenic
AGCTGCTGATCGACATGCTT+CGG 0.433768 1_1:+25188900 None:intergenic
AAGTGTTAAAATGATTGATT+GGG 0.433991 1_1:-25191447 Msa0015610:five_prime_UTR
TACTCCAATTCTAAAGGAAC+AGG 0.435354 1_1:-25189357 Msa0015610:CDS
CATTCAAGGATGTCCTGATC+AGG 0.436067 1_1:-25189163 Msa0015610:CDS
TATAATCATGTATTTGAAGA+AGG 0.438748 1_1:-25188949 Msa0015610:CDS
GGCCACATGAATTGATTTAA+CGG 0.449065 1_1:+25189512 None:intergenic
AAAGCTTGTGCGGGTTTGAA+TGG 0.460255 1_1:-25190965 Msa0015610:five_prime_UTR
CAAAGAGCCAACACAAGTAC+TGG 0.466512 1_1:-25190695 Msa0015610:CDS
GATGCCAGTTTAGAATTAGT+TGG 0.467941 1_1:-25189006 Msa0015610:CDS
TTGCCTAGTAGTACCATTCA+AGG 0.469110 1_1:-25189177 Msa0015610:CDS
GGGTTTGAATGGTATGAGCC+TGG 0.474594 1_1:-25190954 Msa0015610:exon
TTGCATAGACGTCTCTTTGA+CGG 0.476927 1_1:-25188871 Msa0015610:CDS
TTAGGTGTATTCCCCTGATC+AGG 0.484350 1_1:+25189150 None:intergenic
TTAATCTCCAGTACTTGTGT+TGG 0.494093 1_1:+25190688 None:intergenic
CATCCTTGAATGGTACTACT+AGG 0.494514 1_1:+25189174 None:intergenic
TTCTAAAGGAACAGGTGGAA+TGG 0.507113 1_1:-25189349 Msa0015610:CDS
AGAATTAGTTGGTTCCAGAA+AGG 0.525428 1_1:-25188995 Msa0015610:CDS
GCTACTTACTCCAATTCTAA+AGG 0.528933 1_1:-25189363 Msa0015610:CDS
GAATGGTATGAGCCTGGGAG+GGG 0.529449 1_1:-25190948 Msa0015610:exon
AATGAGCATTTCAAATTGAG+TGG 0.531396 1_1:-25188792 Msa0015610:exon
GTTACTATCAAAGCTTGTGC+GGG 0.537008 1_1:-25190974 Msa0015610:five_prime_UTR
TGAATCTAGTTTCTCTGAAG+AGG 0.539721 1_1:-25189385 Msa0015610:CDS
CTTACCACAGGTGATGCATC+AGG 0.548034 1_1:+25190899 None:intergenic
ATTCAAGGATGTCCTGATCA+GGG 0.549232 1_1:-25189162 Msa0015610:CDS
CTGATCAGGACATCCTTGAA+TGG 0.551575 1_1:+25189164 None:intergenic
ATTGATGTTGAAAAGACAAT+GGG 0.558472 1_1:-25189087 Msa0015610:CDS
ACCATGCTATCATGTAACTC+TGG 0.559494 1_1:+25189120 None:intergenic
GATTCAACAGTAATAGATGC+TGG 0.559785 1_1:-25189210 Msa0015610:CDS
CTTCGAGCACTTTGTCACCA+TGG 0.559910 1_1:+25189322 None:intergenic
TGTGTTGGCTCTTTGAGCAG+TGG 0.560118 1_1:+25190703 None:intergenic
TCCAATTCTAAAGGAACAGG+TGG 0.562370 1_1:-25189354 Msa0015610:CDS
TGTGTCTGGAGTAGGTTCTT+CGG 0.567361 1_1:+25189428 None:intergenic
CACGGTTCGTCCATTTCAGG+AGG 0.571329 1_1:-25189043 Msa0015610:CDS
TGAATGGTATGAGCCTGGGA+GGG 0.575492 1_1:-25190949 Msa0015610:exon
GAAGAAGACAAAGATAATGA+TGG 0.575789 1_1:-25189303 Msa0015610:CDS
GGTTTGAATGGTATGAGCCT+GGG 0.578635 1_1:-25190953 Msa0015610:exon
ACGTCTCTTTGACGGCAGAA+TGG 0.580375 1_1:-25188863 Msa0015610:CDS
TCATGTGGCCAGACATTGCA+AGG 0.582086 1_1:-25189499 Msa0015610:CDS
TAAAATTTGAATATTTAGAG+CGG 0.583989 1_1:-25188646 Msa0015610:three_prime_UTR
CAGTTTGAATTCATGTAGAG+TGG 0.585766 1_1:+25188327 None:intergenic
CTGTTAATACTTCCCCTCCC+AGG 0.587392 1_1:+25190936 None:intergenic
TCTATCATCTTTATCTGACA+CGG 0.592596 1_1:-25189673 Msa0015610:CDS
TGCTCTGGAATGCCATAAGA+TGG 0.593271 1_1:+25190733 None:intergenic
TCCAGAGTTACATGATAGCA+TGG 0.595493 1_1:-25189121 Msa0015610:CDS
CTATCATCTTTATCTGACAC+GGG 0.595544 1_1:-25189672 Msa0015610:CDS
TTGAATGGTATGAGCCTGGG+AGG 0.600077 1_1:-25190950 Msa0015610:exon
GACCGTTAAATCAATTCATG+TGG 0.604281 1_1:-25189514 Msa0015610:CDS
ACAGTGTGTGTGTCTGGAGT+AGG 0.604688 1_1:+25189420 None:intergenic
CACAAGATGCTCTTGACATG+TGG 0.611299 1_1:+25189236 None:intergenic
TATTGATGTTGAAAAGACAA+TGG 0.611873 1_1:-25189088 Msa0015610:CDS
ACAGGTGGAATGGAGTTCCA+TGG 0.613269 1_1:-25189339 Msa0015610:CDS
TGTTACTATCAAAGCTTGTG+CGG 0.614885 1_1:-25190975 Msa0015610:five_prime_UTR
TTCAAGGATGTCCTGATCAG+GGG 0.620193 1_1:-25189161 Msa0015610:CDS
CAATACAGACTCAGAAAACA+CGG 0.635402 1_1:-25189061 Msa0015610:CDS
ACGGTTCGTCCATTTCAGGA+GGG 0.639891 1_1:-25189042 Msa0015610:CDS
ATGTACGATTGGAATGTGCA+AGG 0.660221 1_1:-25189629 Msa0015610:intron
ATAGTCGTCCCTATCTATCG+AGG 0.672172 1_1:+25188374 None:intergenic
TCTTGCGTACTCAACAAGAA+CGG 0.698477 1_1:+25188924 None:intergenic
TCTTTCATGTAAGATCTGCG+AGG 0.705553 1_1:-25188681 Msa0015610:three_prime_UTR
TATGCCTGATGCATCACCTG+TGG 0.720348 1_1:-25190903 Msa0015610:intron
TTAATTTGAATAGTTCACAG+TGG 0.736809 1_1:-25189700 Msa0015610:intron
TCTGGAATGCCATAAGATGG+TGG 0.747907 1_1:+25190736 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAACTTATAATCATTGAT+TGG - chr1_1:25188360-25188379 Msa0015610:three_prime_UTR 15.0%
!!! TCTAAAATAAAAATATTTCC+AGG - chr1_1:25188899-25188918 Msa0015610:CDS 15.0%
!! TAAAATTTGAATATTTAGAG+CGG - chr1_1:25191026-25191045 Msa0015610:intron 15.0%
!! ATCTTGAATAAAAAAAAACA+CGG + chr1_1:25191209-25191228 None:intergenic 15.0%
!!! ACTTATATTTTATAAGGTAT+TGG + chr1_1:25191422-25191441 None:intergenic 15.0%
!!! AAAGTGTTAAAATGATTGAT+TGG - chr1_1:25188224-25188243 Msa0015610:three_prime_UTR 20.0%
!! AAGTGTTAAAATGATTGATT+GGG - chr1_1:25188225-25188244 Msa0015610:three_prime_UTR 20.0%
!! TCATCAATTTATCAAAATGA+GGG - chr1_1:25188316-25188335 Msa0015610:three_prime_UTR 20.0%
!! AATAAAAGAAGAGAATGAAT+TGG + chr1_1:25188647-25188666 None:intergenic 20.0%
!! TTAAACAAATAGAACTCAAA+AGG + chr1_1:25189956-25189975 None:intergenic 20.0%
!! TATAATCATGTATTTGAAGA+AGG - chr1_1:25190723-25190742 Msa0015610:CDS 20.0%
!!! ACGTTCACTTATATTTTATA+AGG + chr1_1:25191428-25191447 None:intergenic 20.0%
!! TGTGTATTTTATCACAATCT+TGG - chr1_1:25188293-25188312 Msa0015610:three_prime_UTR 25.0%
! GTCATCAATTTATCAAAATG+AGG - chr1_1:25188315-25188334 Msa0015610:three_prime_UTR 25.0%
! CATCAATTTATCAAAATGAG+GGG - chr1_1:25188317-25188336 Msa0015610:three_prime_UTR 25.0%
!! ATGTTGAAAAGAAAGCATAT+CGG + chr1_1:25188619-25188638 None:intergenic 25.0%
! ACAATAAAAATGAACATGTG+GGG + chr1_1:25188801-25188820 None:intergenic 25.0%
! GACAATAAAAATGAACATGT+GGG + chr1_1:25188802-25188821 None:intergenic 25.0%
! AGACAATAAAAATGAACATG+TGG + chr1_1:25188803-25188822 None:intergenic 25.0%
! GAAGACTTAAATAGTAGAAA+GGG + chr1_1:25189086-25189105 None:intergenic 25.0%
! TGAAGACTTAAATAGTAGAA+AGG + chr1_1:25189087-25189106 None:intergenic 25.0%
! GTTCTATCATAAACCATATT+TGG - chr1_1:25189424-25189443 Msa0015610:CDS 25.0%
! TATTAGAGAAACCATTAGAA+AGG + chr1_1:25189473-25189492 None:intergenic 25.0%
!! TGTAAGAAGAGTATATCAAA+TGG + chr1_1:25189539-25189558 None:intergenic 25.0%
! TTGATATACTCTTCTTACAA+CGG - chr1_1:25189540-25189559 Msa0015610:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr1_1:25189606-25189625 None:intergenic 25.0%
! AACTAAATAACACTGATGTA+TGG + chr1_1:25189773-25189792 None:intergenic 25.0%
! TTGTGGATTTAGTATGAAAA+GGG - chr1_1:25189824-25189843 Msa0015610:intron 25.0%
! GTTAGTTAAATTGGATGTTT+CGG - chr1_1:25189924-25189943 Msa0015610:intron 25.0%
!! TTAATTTGAATAGTTCACAG+TGG - chr1_1:25189972-25189991 Msa0015610:intron 25.0%
!!! TTCACAAATTTTGAAAACTG+TGG + chr1_1:25190094-25190113 None:intergenic 25.0%
!!! TCTTTATTTTCTTGCAGATT+TGG - chr1_1:25190135-25190154 Msa0015610:intron 25.0%
!!! CTTTATTTTCTTGCAGATTT+GGG - chr1_1:25190136-25190155 Msa0015610:intron 25.0%
!!! CTTTTTAACTTCTTCTGATT+TGG + chr1_1:25190214-25190233 None:intergenic 25.0%
! GAAGAAGTTAAAAAGAAAGT+AGG - chr1_1:25190219-25190238 Msa0015610:intron 25.0%
! TATTGATGTTGAAAAGACAA+TGG - chr1_1:25190584-25190603 Msa0015610:intron 25.0%
! ATTGATGTTGAAAAGACAAT+GGG - chr1_1:25190585-25190604 Msa0015610:intron 25.0%
!!! AGAACATAAAAAGTGTTATG+CGG - chr1_1:25190921-25190940 Msa0015610:CDS 25.0%
! AACAGATTAATTAGTCAGAT+TGG - chr1_1:25190953-25190972 Msa0015610:exon 25.0%
!! CTACTACATTTTTATCACAT+TGG + chr1_1:25191074-25191093 None:intergenic 25.0%
!!! GTTTTAGATGTTAGTTAACA+GGG - chr1_1:25191183-25191202 Msa0015610:intron 25.0%
! GTAATTAAAGACTATACGTT+TGG + chr1_1:25191235-25191254 None:intergenic 25.0%
!! AATATTTTACCTCGATAGAT+AGG - chr1_1:25191289-25191308 Msa0015610:intron 25.0%
!! ATATTTTACCTCGATAGATA+GGG - chr1_1:25191290-25191309 Msa0015610:intron 25.0%
TATTGTCTCTTTCCAATTCA+TGG - chr1_1:25188815-25188834 Msa0015610:CDS 30.0%
! TTTGGTGCATTAACTGAATA+TGG - chr1_1:25188870-25188889 Msa0015610:CDS 30.0%
TTGGTGCATTAACTGAATAT+GGG - chr1_1:25188871-25188890 Msa0015610:CDS 30.0%
! AGTACTGGAGATTAAAAATG+TGG - chr1_1:25188992-25189011 Msa0015610:CDS 30.0%
AACCATTAGAAAGGATTTAG+AGG + chr1_1:25189464-25189483 None:intergenic 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG - chr1_1:25189481-25189500 Msa0015610:CDS 30.0%
! AAGAAGAGTATATCAAATGG+AGG + chr1_1:25189536-25189555 None:intergenic 30.0%
AATAACACTGATGTATGGTA+TGG + chr1_1:25189768-25189787 None:intergenic 30.0%
GTTGTGGATTTAGTATGAAA+AGG - chr1_1:25189823-25189842 Msa0015610:intron 30.0%
AATACCGTCGTTAGTTAAAT+TGG - chr1_1:25189915-25189934 Msa0015610:intron 30.0%
ACATCCAATTTAACTAACGA+CGG + chr1_1:25189922-25189941 None:intergenic 30.0%
TCTATCATCTTTATCTGACA+CGG - chr1_1:25189999-25190018 Msa0015610:intron 30.0%
GAAGAAGACAAAGATAATGA+TGG - chr1_1:25190369-25190388 Msa0015610:intron 30.0%
AATGAGCATTTCAAATTGAG+TGG - chr1_1:25190880-25190899 Msa0015610:intron 30.0%
TGTAGTAGCATAATCAAGTT+TGG - chr1_1:25191086-25191105 Msa0015610:intron 30.0%
AAAACCGAAGTCAAAACATT+AGG + chr1_1:25191168-25191187 None:intergenic 30.0%
!!! GGTTTTAGATGTTAGTTAAC+AGG - chr1_1:25191182-25191201 Msa0015610:intron 30.0%
AGTTATAACACCTCTATCCA+AGG + chr1_1:25188347-25188366 None:intergenic 35.0%
TGTTACTATCAAAGCTTGTG+CGG - chr1_1:25188697-25188716 Msa0015610:three_prime_UTR 35.0%
!! GGAAGTATTAACAGTTGTTC+AGG - chr1_1:25188745-25188764 Msa0015610:three_prime_UTR 35.0%
ACAGAATCACAACCATGAAT+TGG + chr1_1:25188830-25188849 None:intergenic 35.0%
TGTGATTCTGTACCTTGATA+TGG - chr1_1:25188839-25188858 Msa0015610:CDS 35.0%
GTGATTCTGTACCTTGATAT+GGG - chr1_1:25188840-25188859 Msa0015610:CDS 35.0%
! GTGGTTTACTATCATTTTCC+TGG + chr1_1:25188920-25188939 None:intergenic 35.0%
GATAGTAAACCACCATCTTA+TGG - chr1_1:25188927-25188946 Msa0015610:CDS 35.0%
TTAATCTCCAGTACTTGTGT+TGG + chr1_1:25188987-25189006 None:intergenic 35.0%
GTTGAAACTAAAGAACACTG+AGG + chr1_1:25189338-25189357 None:intergenic 35.0%
TGGTTTATGATAGAACACCA+TGG + chr1_1:25189420-25189439 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_1:25189440-25189459 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG - chr1_1:25189459-25189478 Msa0015610:CDS 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_1:25189592-25189611 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_1:25189597-25189616 None:intergenic 35.0%
! TCTACCAACTTTTCTACCAT+AGG - chr1_1:25189610-25189629 Msa0015610:intron 35.0%
AAATGACACCATTAGAGAGT+GGG + chr1_1:25189645-25189664 None:intergenic 35.0%
AAAATGACACCATTAGAGAG+TGG + chr1_1:25189646-25189665 None:intergenic 35.0%
CAAGCAGAAATAATTGTAGC+CGG - chr1_1:25189794-25189813 Msa0015610:intron 35.0%
AAATAATTGTAGCCGGATTC+TGG - chr1_1:25189801-25189820 Msa0015610:intron 35.0%
CTATCATCTTTATCTGACAC+GGG - chr1_1:25190000-25190019 Msa0015610:intron 35.0%
!! AATTTTGGAGGATGTACGAT+TGG - chr1_1:25190032-25190051 Msa0015610:intron 35.0%
GACCGTTAAATCAATTCATG+TGG - chr1_1:25190158-25190177 Msa0015610:intron 35.0%
! GGCCACATGAATTGATTTAA+CGG + chr1_1:25190163-25190182 None:intergenic 35.0%
ATTATTGTCCTTGCAATGTC+TGG + chr1_1:25190184-25190203 None:intergenic 35.0%
! TGAATCTAGTTTCTCTGAAG+AGG - chr1_1:25190287-25190306 Msa0015610:intron 35.0%
GCTACTTACTCCAATTCTAA+AGG - chr1_1:25190309-25190328 Msa0015610:intron 35.0%
! TACTCCAATTCTAAAGGAAC+AGG - chr1_1:25190315-25190334 Msa0015610:intron 35.0%
GATTCAACAGTAATAGATGC+TGG - chr1_1:25190462-25190481 Msa0015610:intron 35.0%
TGTAACTCTGGATCATCATT+AGG + chr1_1:25190543-25190562 None:intergenic 35.0%
CAATACAGACTCAGAAAACA+CGG - chr1_1:25190611-25190630 Msa0015610:intron 35.0%
! GATGCCAGTTTAGAATTAGT+TGG - chr1_1:25190666-25190685 Msa0015610:intron 35.0%
GGAACCAACTAATTCTAAAC+TGG + chr1_1:25190673-25190692 None:intergenic 35.0%
! AGAATTAGTTGGTTCCAGAA+AGG - chr1_1:25190677-25190696 Msa0015610:intron 35.0%
TTCTTCCTTAATGTCCTTTC+TGG + chr1_1:25190694-25190713 None:intergenic 35.0%
! GAAGACTTGCATTTTTAACC+TGG - chr1_1:25191126-25191145 Msa0015610:intron 35.0%
CAGTTTGAATTCATGTAGAG+TGG + chr1_1:25191348-25191367 None:intergenic 35.0%
CATATCGGAAATGCTCAAAC+TGG + chr1_1:25188604-25188623 None:intergenic 40.0%
ATCCACATACTAGCAAACAG+GGG + chr1_1:25188672-25188691 None:intergenic 40.0%
GATCCACATACTAGCAAACA+GGG + chr1_1:25188673-25188692 None:intergenic 40.0%
TGATCCACATACTAGCAAAC+AGG + chr1_1:25188674-25188693 None:intergenic 40.0%
GTTACTATCAAAGCTTGTGC+GGG - chr1_1:25188698-25188717 Msa0015610:three_prime_UTR 40.0%
!! CAAAGAAAGTGCCCATATCA+AGG + chr1_1:25188854-25188873 None:intergenic 40.0%
CTTGATATGGGCACTTTCTT+TGG - chr1_1:25188852-25188871 Msa0015610:CDS 40.0%
ACACTACAAGCAGTCATGAT+TGG + chr1_1:25189135-25189154 None:intergenic 40.0%
GGATTTAGAGGTCAATGAGT+TGG + chr1_1:25189452-25189471 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_1:25189511-25189530 None:intergenic 40.0%
ATATCAAATGGAGGAGAGTC+AGG + chr1_1:25189527-25189546 None:intergenic 40.0%
CACACCTATGGTAGAAAAGT+TGG + chr1_1:25189617-25189636 None:intergenic 40.0%
AATGACACCATTAGAGAGTG+GGG + chr1_1:25189644-25189663 None:intergenic 40.0%
GTGGTAAGACTAGACAAGAT+AGG + chr1_1:25189673-25189692 None:intergenic 40.0%
TGATGTATGGTATGGAGTGT+TGG + chr1_1:25189760-25189779 None:intergenic 40.0%
CTAAATCCACAACCAGAATC+CGG + chr1_1:25189816-25189835 None:intergenic 40.0%
AGCCTTTGCTTAATAGCTTC+TGG - chr1_1:25189872-25189891 Msa0015610:intron 40.0%
GACCAGAAGCTATTAAGCAA+AGG + chr1_1:25189877-25189896 None:intergenic 40.0%
! CACGGGAATCGAAGAAATTT+TGG - chr1_1:25190017-25190036 Msa0015610:intron 40.0%
! GGGAATCGAAGAAATTTTGG+AGG - chr1_1:25190020-25190039 Msa0015610:intron 40.0%
ATGTACGATTGGAATGTGCA+AGG - chr1_1:25190043-25190062 Msa0015610:intron 40.0%
TTAGTAACAGTGTGTGTGTC+TGG + chr1_1:25190261-25190280 None:intergenic 40.0%
! TCCAATTCTAAAGGAACAGG+TGG - chr1_1:25190318-25190337 Msa0015610:intron 40.0%
!! TCCACCTGTTCCTTTAGAAT+TGG + chr1_1:25190322-25190341 None:intergenic 40.0%
! TTCTAAAGGAACAGGTGGAA+TGG - chr1_1:25190323-25190342 Msa0015610:intron 40.0%
TTGCCTAGTAGTACCATTCA+AGG - chr1_1:25190495-25190514 Msa0015610:intron 40.0%
CATCCTTGAATGGTACTACT+AGG + chr1_1:25190501-25190520 None:intergenic 40.0%
ATTCAAGGATGTCCTGATCA+GGG - chr1_1:25190510-25190529 Msa0015610:intron 40.0%
TCCAGAGTTACATGATAGCA+TGG - chr1_1:25190551-25190570 Msa0015610:intron 40.0%
ACCATGCTATCATGTAACTC+TGG + chr1_1:25190555-25190574 None:intergenic 40.0%
TGGTTCCAGAAAGGACATTA+AGG - chr1_1:25190686-25190705 Msa0015610:CDS 40.0%
TCTTGCGTACTCAACAAGAA+CGG + chr1_1:25190751-25190770 None:intergenic 40.0%
TTGCATAGACGTCTCTTTGA+CGG - chr1_1:25190801-25190820 Msa0015610:intron 40.0%
CTCTGAGTCTATACAGAGAA+AGG - chr1_1:25190850-25190869 Msa0015610:intron 40.0%
TCTTTCATGTAAGATCTGCG+AGG - chr1_1:25190991-25191010 Msa0015610:five_prime_UTR 40.0%
! GGTGCGAAATGAATTTTTCC+AGG + chr1_1:25191147-25191166 None:intergenic 40.0%
!!! CGCACCTAATGTTTTGACTT+CGG - chr1_1:25191161-25191180 Msa0015610:intron 40.0%
TCCACATACTAGCAAACAGG+GGG + chr1_1:25188671-25188690 None:intergenic 45.0%
AAAGCTTGTGCGGGTTTGAA+TGG - chr1_1:25188707-25188726 Msa0015610:three_prime_UTR 45.0%
GGTTTGAATGGTATGAGCCT+GGG - chr1_1:25188719-25188738 Msa0015610:three_prime_UTR 45.0%
! TCTGGAATGCCATAAGATGG+TGG + chr1_1:25188939-25188958 None:intergenic 45.0%
!! TGCTCTGGAATGCCATAAGA+TGG + chr1_1:25188942-25188961 None:intergenic 45.0%
CAAAGAGCCAACACAAGTAC+TGG - chr1_1:25188977-25188996 Msa0015610:CDS 45.0%
AGTCCCACCACATTGAGAAT+GGG - chr1_1:25189239-25189258 Msa0015610:CDS 45.0%
TGTCCCATTCTCAATGTGGT+GGG + chr1_1:25189245-25189264 None:intergenic 45.0%
CATGTGTCCCATTCTCAATG+TGG + chr1_1:25189249-25189268 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_1:25189370-25189389 Msa0015610:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_1:25189371-25189390 Msa0015610:CDS 45.0%
ACATGGATCAAATGACGCCA+TGG - chr1_1:25189400-25189419 Msa0015610:CDS 45.0%
AAAGAGGTAGAGGAAGACCT+AGG + chr1_1:25189501-25189520 None:intergenic 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr1_1:25189517-25189536 None:intergenic 45.0%
! TCTTCTTACAACGGCATCGA+CGG - chr1_1:25189549-25189568 Msa0015610:intron 45.0%
ATGACACCATTAGAGAGTGG+GGG + chr1_1:25189643-25189662 None:intergenic 45.0%
AGGATGTTGCATTGGATGAG+TGG + chr1_1:25189692-25189711 None:intergenic 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + chr1_1:25189712-25189731 None:intergenic 45.0%
CGAGAGTCAAGTAAGTGTAG+CGG + chr1_1:25189720-25189739 None:intergenic 45.0%
CACTTACTTGACTCTCGTGT+TGG - chr1_1:25189723-25189742 Msa0015610:intron 45.0%
!! GTATGGTATGGAGTGTTGGA+CGG + chr1_1:25189756-25189775 None:intergenic 45.0%
! TGTGTCTGGAGTAGGTTCTT+CGG + chr1_1:25190247-25190266 None:intergenic 45.0%
CACAAGATGCTCTTGACATG+TGG + chr1_1:25190439-25190458 None:intergenic 45.0%
CTGATCAGGACATCCTTGAA+TGG + chr1_1:25190511-25190530 None:intergenic 45.0%
CATTCAAGGATGTCCTGATC+AGG - chr1_1:25190509-25190528 Msa0015610:intron 45.0%
TTCAAGGATGTCCTGATCAG+GGG - chr1_1:25190511-25190530 Msa0015610:intron 45.0%
TTAGGTGTATTCCCCTGATC+AGG + chr1_1:25190525-25190544 None:intergenic 45.0%
AAACACGGTTCGTCCATTTC+AGG - chr1_1:25190626-25190645 Msa0015610:intron 45.0%
ATAGTCGTCCCTATCTATCG+AGG + chr1_1:25191301-25191320 None:intergenic 45.0%
!!! GAATTTTTTTATTATTTATA+AGG - chr1_1:25189018-25189037 Msa0015610:CDS 5.0%
! TCAAAATGAGGGGTGCACCT+TGG - chr1_1:25188327-25188346 Msa0015610:three_prime_UTR 50.0%
! TCCCCCTGTTTGCTAGTATG+TGG - chr1_1:25188667-25188686 Msa0015610:three_prime_UTR 50.0%
GGGTTTGAATGGTATGAGCC+TGG - chr1_1:25188718-25188737 Msa0015610:three_prime_UTR 50.0%
TTGAATGGTATGAGCCTGGG+AGG - chr1_1:25188722-25188741 Msa0015610:three_prime_UTR 50.0%
TGAATGGTATGAGCCTGGGA+GGG - chr1_1:25188723-25188742 Msa0015610:three_prime_UTR 50.0%
CTGTTAATACTTCCCCTCCC+AGG + chr1_1:25188739-25188758 None:intergenic 50.0%
TATGCCTGATGCATCACCTG+TGG - chr1_1:25188769-25188788 Msa0015610:three_prime_UTR 50.0%
CTTACCACAGGTGATGCATC+AGG + chr1_1:25188776-25188795 None:intergenic 50.0%
ACATGTGGGGAACTTACCAC+AGG + chr1_1:25188788-25188807 None:intergenic 50.0%
!! TGTGTTGGCTCTTTGAGCAG+TGG + chr1_1:25188972-25188991 None:intergenic 50.0%
GAGTCCCACCACATTGAGAA+TGG - chr1_1:25189238-25189257 Msa0015610:CDS 50.0%
GTGTCCCATTCTCAATGTGG+TGG + chr1_1:25189246-25189265 None:intergenic 50.0%
TGGGACACATGACTTCAGTG+AGG - chr1_1:25189258-25189277 Msa0015610:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_1:25189372-25189391 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_1:25189369-25189388 Msa0015610:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_1:25189375-25189394 Msa0015610:CDS 50.0%
!! CTTCTTACAACGGCATCGAC+GGG - chr1_1:25189550-25189569 Msa0015610:intron 50.0%
CGGAGATGAGGATGTTGCAT+TGG + chr1_1:25189700-25189719 None:intergenic 50.0%
! TTGTAGCCGGATTCTGGTTG+TGG - chr1_1:25189807-25189826 Msa0015610:intron 50.0%
TCATGTGGCCAGACATTGCA+AGG - chr1_1:25190173-25190192 Msa0015610:intron 50.0%
! ACAGTGTGTGTGTCTGGAGT+AGG + chr1_1:25190255-25190274 None:intergenic 50.0%
ACAGGTGGAATGGAGTTCCA+TGG - chr1_1:25190333-25190352 Msa0015610:intron 50.0%
CTTCGAGCACTTTGTCACCA+TGG + chr1_1:25190353-25190372 None:intergenic 50.0%
ACGGTTCGTCCATTTCAGGA+GGG - chr1_1:25190630-25190649 Msa0015610:intron 50.0%
CCAGAAAAGCCCTCCTGAAA+TGG + chr1_1:25190642-25190661 None:intergenic 50.0%
! CCATTTCAGGAGGGCTTTTC+TGG - chr1_1:25190639-25190658 Msa0015610:intron 50.0%
AGCTGCTGATCGACATGCTT+CGG + chr1_1:25190775-25190794 None:intergenic 50.0%
ACGTCTCTTTGACGGCAGAA+TGG - chr1_1:25190809-25190828 Msa0015610:intron 50.0%
GAATGGTATGAGCCTGGGAG+GGG - chr1_1:25188724-25188743 Msa0015610:three_prime_UTR 55.0%
! AGCAGTGGCTTTGCATGCTC+TGG + chr1_1:25188957-25188976 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_1:25189377-25189396 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_1:25189383-25189402 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_1:25189384-25189403 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_1:25189383-25189402 Msa0015610:CDS 55.0%
GTGCTACCCCCACTCTCTAA+TGG - chr1_1:25189634-25189653 Msa0015610:CDS 55.0%
CACGGTTCGTCCATTTCAGG+AGG - chr1_1:25190629-25190648 Msa0015610:intron 55.0%
! GAGGGGTGCACCTTGGATAG+AGG - chr1_1:25188334-25188353 Msa0015610:three_prime_UTR 60.0%
GAGTGGGGGTAGCACACCTA+TGG + chr1_1:25189629-25189648 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 25188220 25191474 25188220 ID=Msa0015610;Name=Msa0015610
chr1_1 mRNA 25188220 25191474 25188220 ID=Msa0015610-mRNA-1;Parent=Msa0015610;Name=Msa0015610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=83|1|1|1|0.6|0.5|6|553|321
chr1_1 exon 25188220 25188467 25188220 ID=Msa0015610-mRNA-1:exon:8748;Parent=Msa0015610-mRNA-1
chr1_1 exon 25188505 25189542 25188505 ID=Msa0015610-mRNA-1:exon:8747;Parent=Msa0015610-mRNA-1
chr1_1 exon 25189630 25189709 25189630 ID=Msa0015610-mRNA-1:exon:8746;Parent=Msa0015610-mRNA-1
chr1_1 exon 25190681 25190773 25190681 ID=Msa0015610-mRNA-1:exon:8745;Parent=Msa0015610-mRNA-1
chr1_1 exon 25190904 25191011 25190904 ID=Msa0015610-mRNA-1:exon:8744;Parent=Msa0015610-mRNA-1
chr1_1 exon 25191440 25191474 25191440 ID=Msa0015610-mRNA-1:exon:8743;Parent=Msa0015610-mRNA-1
chr1_1 five_prime_UTR 25191440 25191474 25191440 ID=Msa0015610-mRNA-1:five_prime_utr;Parent=Msa0015610-mRNA-1
chr1_1 five_prime_UTR 25190964 25191011 25190964 ID=Msa0015610-mRNA-1:five_prime_utr;Parent=Msa0015610-mRNA-1
chr1_1 CDS 25190904 25190963 25190904 ID=Msa0015610-mRNA-1:cds;Parent=Msa0015610-mRNA-1
chr1_1 CDS 25190681 25190773 25190681 ID=Msa0015610-mRNA-1:cds;Parent=Msa0015610-mRNA-1
chr1_1 CDS 25189630 25189709 25189630 ID=Msa0015610-mRNA-1:cds;Parent=Msa0015610-mRNA-1
chr1_1 CDS 25188810 25189542 25188810 ID=Msa0015610-mRNA-1:cds;Parent=Msa0015610-mRNA-1
chr1_1 three_prime_UTR 25188505 25188809 25188505 ID=Msa0015610-mRNA-1:three_prime_utr;Parent=Msa0015610-mRNA-1
chr1_1 three_prime_UTR 25188220 25188467 25188220 ID=Msa0015610-mRNA-1:three_prime_utr;Parent=Msa0015610-mRNA-1
Gene Sequence

>Msa0015610

ATGAGCCTGGGAGGGGAAGTATTAACAGTTGTTCAGGCTATGCCTGATGCATCACCTGTGGAAAATGATAGTAAACCACCATCTTATGGCATTCCAGAGCATGCAAAGCCACTGCTCAAAGAGCCAACACAAGTACTGGAGATTAAAAATGTGTTCACAGTGGAGTCTCTATCATCTTTATCTGACACGGGAATCGAAGAAATTTTGGAGGATGTACGATTGGAATGTGCAAGATTTGGGACCGTTAAATCAATTCATGTGGCCAGACATTGCAAGGACAATAATTTAGCAACCAAATCAGAAGAAGTTAAAAAGAAAGTAGGTTCCGAAGAACCTACTCCAGACACACACACTGTTACTAATGATGCTGAATCTAGTTTCTCTGAAGAGGCTACTTACTCCAATTCTAAAGGAACAGGTGGAATGGAGTTCCATGGTGACAAAGTGCTCGAAGAAGACAAAGATAATGATGGTACTAGTGTTAATGTTGATAAAAATGCTGAAGTTTTTGATAATACCACATGTCAAGAGCATCTTGTGATTGATTCAACAGTAATAGATGCTGGCAATGAAGATTTGCCTAGTAGTACCATTCAAGGATGTCCTGATCAGGGGAATACACCTAATGATGATCCAGAGTTACATGATAGCATGGTTGCTAACGATATTGATGTTGAAAAGACAATGGGTGTCAATACAGACTCAGAAAACACGGTTCGTCCATTTCAGGAGGGCTTTTCTGGATGTGATGCCAGTTTAGAATTAGTTGGTTCCAGAAAGGACATTAAGGAAGAAGATGATACTTATAATCATGTATTTGAAGAAGGTTCCGTTCTTGTTGAGTACGCAAGATCCGAAGCATGTCGATCAGCAGCTCATTGTTTGCATAGACGTCTCTTTGACGGCAGAATGGTGTCAGTTCAGTATGTTGCTCTGAGTCTATACAGAGAAAGGTTTACAAAATGA

Protein sequence

>Msa0015610

MSLGGEVLTVVQAMPDASPVENDSKPPSYGIPEHAKPLLKEPTQVLEIKNVFTVESLSSLSDTGIEEILEDVRLECARFGTVKSIHVARHCKDNNLATKSEEVKKKVGSEEPTPDTHTVTNDAESSFSEEATYSNSKGTGGMEFHGDKVLEEDKDNDGTSVNVDKNAEVFDNTTCQEHLVIDSTVIDAGNEDLPSSTIQGCPDQGNTPNDDPELHDSMVANDIDVEKTMGVNTDSENTVRPFQEGFSGCDASLELVGSRKDIKEEDDTYNHVFEEGSVLVEYARSEACRSAAHCLHRRLFDGRMVSVQYVALSLYRERFTK*