AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331320 MtrunA17_Chr4g0056191 99.559 227 1 0 1 227 1 227 2.18e-167 460
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331320 AT3G13200.1 73.913 230 57 1 1 227 1 230 5.46e-105 303

Find 66 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAATTGCTTTCACAAAT+AGG 0.209078 8_4:-50840416 None:intergenic
TTTAGATCCAAATCATAAAT+TGG 0.236784 8_4:-50840354 None:intergenic
TATAATTGCTTTCACAAATA+GGG 0.271523 8_4:-50840415 None:intergenic
ACGTTGTCCAATTTATGATT+TGG 0.308262 8_4:+50840347 Msa1331320:three_prime_UTR
GCCTTGTTCGTTTCCACCTT+TGG 0.329362 8_4:-50836929 None:intergenic
AATGTAATATATTGTGTTGA+TGG 0.340079 8_4:+50840283 Msa1331320:three_prime_UTR
TGTCAGAAACCTGAGTTGTT+TGG 0.354566 8_4:+50840229 Msa1331320:three_prime_UTR
TATAAACCATAAGTTTCTTC+AGG 0.365747 8_4:-50840254 None:intergenic
GGATGACACTGAAGCTTTGC+TGG 0.370195 8_4:+50838938 Msa1331320:CDS
TTGGAGCCTGAAGAAACTTA+TGG 0.386666 8_4:+50840248 Msa1331320:three_prime_UTR
GATGAATCGCTTTGCGAGCT+TGG 0.402778 8_4:-50840142 None:intergenic
CATCTTTCAGTGTCAAAAGA+AGG 0.407995 8_4:+50839548 Msa1331320:CDS
TTCCTTCCTTTCTTCAATCA+CGG 0.408767 8_4:+50836830 Msa1331320:five_prime_UTR
TCCTTCCTTTCTTCAATCAC+GGG 0.423596 8_4:+50836831 Msa1331320:five_prime_UTR
TCCATGCTTTGACAGATGAC+AGG 0.425910 8_4:+50838179 Msa1331320:intron
CCTTTGGCCGGTGCCCATGT+TGG 0.438499 8_4:-50836913 None:intergenic
TTGGGTACTTAGCAGGTTAG+AGG 0.440145 8_4:+50840454 Msa1331320:three_prime_UTR
TGCGAGCTTGGTTTCTCCAC+GGG 0.448028 8_4:-50840130 None:intergenic
CTTACTTCATGTATTTGTGC+AGG 0.449310 8_4:-50840200 None:intergenic
AATGTACTTGGGTACTTAGC+AGG 0.450760 8_4:+50840447 Msa1331320:three_prime_UTR
TGTTCGTTTCCACCTTTGGC+CGG 0.457672 8_4:-50836925 None:intergenic
ATGTCGGGTTATTGATCAAA+GGG 0.461011 8_4:-50839528 None:intergenic
TTGACAGATGACAGGGATCA+TGG 0.467290 8_4:+50838187 Msa1331320:intron
ATTTGTGCAGGAATTTCCTA+TGG 0.474919 8_4:-50840188 None:intergenic
AGAGGAAGATCTTAAAGTAA+AGG 0.493826 8_4:+50839483 Msa1331320:CDS
GATTCATCAATGACACCATC+AGG 0.497137 8_4:+50840157 Msa1331320:CDS
CTTCAGGCTCCAAACAACTC+AGG 0.508450 8_4:-50840238 None:intergenic
TTGCGAGCTTGGTTTCTCCA+CGG 0.514076 8_4:-50840131 None:intergenic
TTGAACAAATAAAGAAGGAA+AGG 0.524193 8_4:+50838967 Msa1331320:CDS
CGCTAGACCAACATGGGCAC+CGG 0.524224 8_4:+50836906 Msa1331320:CDS
TGAACAAATAAAGAAGGAAA+GGG 0.539554 8_4:+50838968 Msa1331320:CDS
TCCCGTGATTGAAGAAAGGA+AGG 0.541244 8_4:-50836832 None:intergenic
TGAGCTTGAACAAATAAAGA+AGG 0.544665 8_4:+50838962 Msa1331320:CDS
CCATGCTTTGACAGATGACA+GGG 0.549331 8_4:+50838180 Msa1331320:intron
AATAAAGAAGGAAAGGGCAC+AGG 0.549972 8_4:+50838974 Msa1331320:CDS
GATGACAGGGATCATGGAAG+GGG 0.552181 8_4:+50838193 Msa1331320:intron
GAAAGACGGGCAGGATACAC+AGG 0.556936 8_4:+50837943 Msa1331320:CDS
CGACCGCCGCTAGACCAACA+TGG 0.559680 8_4:+50836899 Msa1331320:CDS
GATGTCGGGTTATTGATCAA+AGG 0.561231 8_4:-50839529 None:intergenic
ACATGGGCACCGGCCAAAGG+TGG 0.565377 8_4:+50836916 Msa1331320:CDS
GACAGGGATCATGGAAGGGG+CGG 0.566656 8_4:+50838196 Msa1331320:CDS
GGAAGATCTTAAAGTAAAGG+AGG 0.567127 8_4:+50839486 Msa1331320:CDS
CGCACACCACTCTCAAACCT+AGG 0.567486 8_4:+50837004 Msa1331320:CDS
CAGATGACAGGGATCATGGA+AGG 0.571029 8_4:+50838191 Msa1331320:intron
CACAGGATGAGTTAAAGAGA+AGG 0.579428 8_4:+50837960 Msa1331320:CDS
GCCAAAGGTGGAAACGAACA+AGG 0.588363 8_4:+50836928 Msa1331320:CDS
CCATCAGGAATGATTTCCAT+AGG 0.597909 8_4:+50840172 Msa1331320:CDS
AGATGACAGGGATCATGGAA+GGG 0.602143 8_4:+50838192 Msa1331320:intron
CCTATGGAAATCATTCCTGA+TGG 0.606526 8_4:-50840172 None:intergenic
CAGTGATGACGACGACGATG+AGG 0.607786 8_4:+50838917 Msa1331320:intron
GTATAGGTGGGATGATGATG+TGG 0.611321 8_4:+50840092 Msa1331320:intron
GACCGCCGCTAGACCAACAT+GGG 0.618179 8_4:+50836900 Msa1331320:CDS
CGGTGCCCATGTTGGTCTAG+CGG 0.624635 8_4:-50836905 None:intergenic
AGCTTGATGAACGTGAAAGG+AGG 0.626044 8_4:+50837996 Msa1331320:CDS
GCAGGAACAACAACAACAAG+AGG 0.626881 8_4:+50839465 Msa1331320:intron
GGCACAGGAAAAGCTGCGCA+AGG 0.629250 8_4:+50838989 Msa1331320:CDS
AAGTCAACAGTGATGATGAA+AGG 0.633175 8_4:+50838446 Msa1331320:CDS
ATGAGCTTGATGAACGTGAA+AGG 0.637079 8_4:+50837993 Msa1331320:CDS
CAATCACGGGAAAACAAAGT+CGG 0.638957 8_4:+50836844 Msa1331320:five_prime_UTR
CGGCGGTCGTCATCGGATCG+AGG 0.639598 8_4:-50836885 None:intergenic
AAGGAGGCAGAGCTTATGCG+TGG 0.661072 8_4:+50839502 Msa1331320:CDS
AACCTACCTAGGTTTGAGAG+TGG 0.662167 8_4:-50837010 None:intergenic
ACTTGGTTGGAACACACAAG+TGG 0.664795 8_4:-50840498 None:intergenic
TCATCTGCATCAACACTGCG+TGG 0.670152 8_4:-50838412 None:intergenic
GTTCATCAAGCTCATCACGT+AGG 0.739279 8_4:-50837985 None:intergenic
AAAGGTGGAAACGAACAAGG+CGG 0.806134 8_4:+50836931 Msa1331320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAATTTACATTTTAAATAA+GGG - chr8_4:50839439-50839458 None:intergenic 10.0%
!!! CATTTTTTTAAAATTTTGTT+TGG + chr8_4:50840070-50840089 Msa1331320:intron 10.0%
!! ATCAAAATCAACAAAAAATT+GGG - chr8_4:50837042-50837061 None:intergenic 15.0%
!! AATCAAAATCAACAAAAAAT+TGG - chr8_4:50837043-50837062 None:intergenic 15.0%
!! TAATTCAAATCAAATTTGAA+GGG - chr8_4:50837476-50837495 None:intergenic 15.0%
!! TCAAAAAATAAATCGTATAA+TGG + chr8_4:50838028-50838047 Msa1331320:CDS 15.0%
!!! GACAATTTACATTTTAAATA+AGG - chr8_4:50839440-50839459 None:intergenic 15.0%
!! TAATTTGAATCTTGATATTT+AGG + chr8_4:50839803-50839822 Msa1331320:intron 15.0%
!!! TTTAAAATTTTGTTTGGTAT+AGG + chr8_4:50840076-50840095 Msa1331320:intron 15.0%
!!! ACACAATATATTACATTTTA+AGG - chr8_4:50840280-50840299 None:intergenic 15.0%
!! ATAAAAATTACAAATGTACT+TGG + chr8_4:50840435-50840454 Msa1331320:three_prime_UTR 15.0%
!! TAAAAATTACAAATGTACTT+GGG + chr8_4:50840436-50840455 Msa1331320:three_prime_UTR 15.0%
!! TCAAAATCAACAAAAAATTG+GGG - chr8_4:50837041-50837060 None:intergenic 20.0%
!! TATGGGTAATTAAAATTCAT+TGG + chr8_4:50837167-50837186 Msa1331320:intron 20.0%
!!! TTGATAAGTTAGTTTTTTCA+TGG + chr8_4:50837247-50837266 Msa1331320:intron 20.0%
!!! TGATAAGTTAGTTTTTTCAT+GGG + chr8_4:50837248-50837267 Msa1331320:intron 20.0%
!! AATTTCTCAATGTTATTGAT+AGG + chr8_4:50837271-50837290 Msa1331320:intron 20.0%
!! AATTCAAATCAAATTTGAAG+GGG - chr8_4:50837475-50837494 None:intergenic 20.0%
!! CTAATTCAAATCAAATTTGA+AGG - chr8_4:50837477-50837496 None:intergenic 20.0%
!!! CTTCAAATTTGATTTGAATT+AGG + chr8_4:50837475-50837494 Msa1331320:intron 20.0%
!! ACATTAAGTGATATAATTCA+TGG - chr8_4:50837585-50837604 None:intergenic 20.0%
!!! TAATACCTTCTAAAAATAGA+TGG - chr8_4:50838222-50838241 None:intergenic 20.0%
!! GACTGAATATAAATATATCA+TGG - chr8_4:50838330-50838349 None:intergenic 20.0%
!! TTTATATGCATGTATCATTT+AGG + chr8_4:50838513-50838532 Msa1331320:intron 20.0%
!!! GATAACGTTTTTTTTTTAAG+AGG - chr8_4:50838689-50838708 None:intergenic 20.0%
!! TGCTACTATTTACAAAAATA+AGG - chr8_4:50838870-50838889 None:intergenic 20.0%
!!! AATTAGATAGTTTTTGTTGA+AGG + chr8_4:50839257-50839276 Msa1331320:intron 20.0%
!!! ATTAGATAGTTTTTGTTGAA+GGG + chr8_4:50839258-50839277 Msa1331320:intron 20.0%
!!! ATCTATCTTTTACAGTAAAT+AGG + chr8_4:50839870-50839889 Msa1331320:intron 20.0%
!! AATGTAATATATTGTGTTGA+TGG + chr8_4:50840283-50840302 Msa1331320:three_prime_UTR 20.0%
!! TTTAGATCCAAATCATAAAT+TGG - chr8_4:50840357-50840376 None:intergenic 20.0%
!! TATAATTGCTTTCACAAATA+GGG - chr8_4:50840418-50840437 None:intergenic 20.0%
!! TTATAATTGCTTTCACAAAT+AGG - chr8_4:50840419-50840438 None:intergenic 20.0%
!!! ATCTCTTGAAGAGTATTTTT+GGG - chr8_4:50836977-50836996 None:intergenic 25.0%
!!! TATCTCTTGAAGAGTATTTT+TGG - chr8_4:50836978-50836997 None:intergenic 25.0%
! AAAATCAACAAAAAATTGGG+GGG - chr8_4:50837039-50837058 None:intergenic 25.0%
! CAAAATCAACAAAAAATTGG+GGG - chr8_4:50837040-50837059 None:intergenic 25.0%
! CATGGTATTACATAGATAAA+AGG - chr8_4:50837098-50837117 None:intergenic 25.0%
! TCGAATTTATTCGTGAAATT+AGG + chr8_4:50837124-50837143 Msa1331320:intron 25.0%
!! GTTAAGTTAATTTGATCTTG+AGG + chr8_4:50837204-50837223 Msa1331320:intron 25.0%
! GTTACTGTAATCTGATAATA+CGG + chr8_4:50837336-50837355 Msa1331320:intron 25.0%
! CTCGATAAAATGATAACATT+TGG - chr8_4:50837406-50837425 None:intergenic 25.0%
! ATTCAAATCAAATTTGAAGG+GGG - chr8_4:50837474-50837493 None:intergenic 25.0%
! CTACTAAGTGATATAATTTG+GGG - chr8_4:50837553-50837572 None:intergenic 25.0%
! GCTACTAAGTGATATAATTT+GGG - chr8_4:50837554-50837573 None:intergenic 25.0%
! TGCTACTAAGTGATATAATT+TGG - chr8_4:50837555-50837574 None:intergenic 25.0%
!!! AACCATTTTAGTCATTGAAA+TGG + chr8_4:50837787-50837806 Msa1331320:intron 25.0%
! AACCATTTCAATGACTAAAA+TGG - chr8_4:50837792-50837811 None:intergenic 25.0%
! CTTAATCATTTAAAAGAGAG+CGG - chr8_4:50837841-50837860 None:intergenic 25.0%
!! GTTGCATTTATACCTTTTAT+AGG + chr8_4:50837921-50837940 Msa1331320:intron 25.0%
!! TATACCTTTTATAGGAAAGA+CGG + chr8_4:50837929-50837948 Msa1331320:intron 25.0%
!!! ATGATGAAAGGTTGATAATT+TGG + chr8_4:50838458-50838477 Msa1331320:intron 25.0%
! AATAAAATAACAACCCTTGA+TGG - chr8_4:50838549-50838568 None:intergenic 25.0%
!!! AATATGCATGCTATTTCTAT+TGG + chr8_4:50838611-50838630 Msa1331320:intron 25.0%
!! TTAAGCATGTCTTCTTTTAA+GGG - chr8_4:50838732-50838751 None:intergenic 25.0%
!! ATTAAGCATGTCTTCTTTTA+AGG - chr8_4:50838733-50838752 None:intergenic 25.0%
! TTGAACAAATAAAGAAGGAA+AGG + chr8_4:50838967-50838986 Msa1331320:CDS 25.0%
! TGAACAAATAAAGAAGGAAA+GGG + chr8_4:50838968-50838987 Msa1331320:CDS 25.0%
! AAGCTAATTAGAATGTACAT+CGG + chr8_4:50839156-50839175 Msa1331320:intron 25.0%
!! TTAGATAGTTTTTGTTGAAG+GGG + chr8_4:50839259-50839278 Msa1331320:intron 25.0%
! ACAAGAATTGAAGAATAGAA+TGG - chr8_4:50839320-50839339 None:intergenic 25.0%
! ATTCTATTCTTCAATTCTTG+TGG + chr8_4:50839319-50839338 Msa1331320:intron 25.0%
! TTCTATTCTTCAATTCTTGT+GGG + chr8_4:50839320-50839339 Msa1331320:intron 25.0%
!! AAGGTATTTGTTACTAAGAT+AGG - chr8_4:50839354-50839373 None:intergenic 25.0%
!! TTCAGTTAAATAAGTCCTTT+TGG - chr8_4:50839609-50839628 None:intergenic 25.0%
! AGAAAAATGGCAAACTATTA+GGG - chr8_4:50839633-50839652 None:intergenic 25.0%
! AAGAAAAATGGCAAACTATT+AGG - chr8_4:50839634-50839653 None:intergenic 25.0%
!!! ATCATTGACTTTTCAATCAA+CGG - chr8_4:50839702-50839721 None:intergenic 25.0%
!!! ATTATTGATTTTCCAATCAG+TGG + chr8_4:50839777-50839796 Msa1331320:intron 25.0%
! TTCAAATTATAACCACTGAT+TGG - chr8_4:50839792-50839811 None:intergenic 25.0%
! TTTGAATCTTGATATTTAGG+TGG + chr8_4:50839806-50839825 Msa1331320:intron 25.0%
!!! TATTTTTCAAGCGTTATTTG+TGG + chr8_4:50839906-50839925 Msa1331320:intron 25.0%
!!! TGGAAGTATTAATATGCAAA+TGG + chr8_4:50839965-50839984 Msa1331320:intron 25.0%
!!! ACTTAAAACTTTAAAGTGGT+TGG - chr8_4:50840003-50840022 None:intergenic 25.0%
!! AGTCACTTAAAACTTTAAAG+TGG - chr8_4:50840007-50840026 None:intergenic 25.0%
!!! AAAATTTTGTTTGGTATAGG+TGG + chr8_4:50840079-50840098 Msa1331320:intron 25.0%
!!! AAATTTTGTTTGGTATAGGT+GGG + chr8_4:50840080-50840099 Msa1331320:intron 25.0%
! TATAAACCATAAGTTTCTTC+AGG - chr8_4:50840257-50840276 None:intergenic 25.0%
GTGATGTATTGTCATATAGT+AGG + chr8_4:50837293-50837312 Msa1331320:intron 30.0%
CTTATTGTAAACCTGTACTT+AGG + chr8_4:50837370-50837389 Msa1331320:intron 30.0%
TAAACCTGTACTTAGGTAAT+TGG + chr8_4:50837377-50837396 Msa1331320:intron 30.0%
!! CTAGTTTTTACAAGAACAGA+AGG + chr8_4:50837609-50837628 Msa1331320:intron 30.0%
GCAAAAAAAACGTGATAACA+TGG - chr8_4:50837897-50837916 None:intergenic 30.0%
! ATACCTTTTATAGGAAAGAC+GGG + chr8_4:50837930-50837949 Msa1331320:intron 30.0%
AAAATGAAAACTTGTCTCAC+AGG - chr8_4:50838126-50838145 None:intergenic 30.0%
TCCAATTACTATCCAAGAAA+AGG + chr8_4:50838291-50838310 Msa1331320:intron 30.0%
! TCCTTTTCTTGGATAGTAAT+TGG - chr8_4:50838295-50838314 None:intergenic 30.0%
! TTCTTTTCTTCTCCTTTTCT+TGG - chr8_4:50838306-50838325 None:intergenic 30.0%
TGATGAGTCTTTATCTTAAC+AGG + chr8_4:50838358-50838377 Msa1331320:intron 30.0%
!!! TTTTTTTTAAGAGGACCACA+AGG - chr8_4:50838680-50838699 None:intergenic 30.0%
AAAAAAAACGTTATCACACG+AGG + chr8_4:50838694-50838713 Msa1331320:intron 30.0%
AAAAAAACGTTATCACACGA+GGG + chr8_4:50838695-50838714 Msa1331320:intron 30.0%
! TAAGCATGTCTTCTTTTAAG+GGG - chr8_4:50838731-50838750 None:intergenic 30.0%
TGCATTTAAGTAATCTTCGT+CGG + chr8_4:50838792-50838811 Msa1331320:intron 30.0%
TGAGCTTGAACAAATAAAGA+AGG + chr8_4:50838962-50838981 Msa1331320:CDS 30.0%
AGAGTGGTTAGGAATTTATA+AGG + chr8_4:50839191-50839210 Msa1331320:intron 30.0%
GAGTGGTTAGGAATTTATAA+GGG + chr8_4:50839192-50839211 Msa1331320:intron 30.0%
! TCAGATAAATAGAGTACTTG+AGG + chr8_4:50839222-50839241 Msa1331320:intron 30.0%
! CAGATAAATAGAGTACTTGA+GGG + chr8_4:50839223-50839242 Msa1331320:intron 30.0%
ACAAAGAGAATTCTCCTAAA+AGG - chr8_4:50839289-50839308 None:intergenic 30.0%
ACAACTAATTAGCATGCAAA+AGG - chr8_4:50839373-50839392 None:intergenic 30.0%
AATGTAAATTGTCTTTGTGC+AGG + chr8_4:50839447-50839466 Msa1331320:intron 30.0%
AGAGGAAGATCTTAAAGTAA+AGG + chr8_4:50839483-50839502 Msa1331320:CDS 30.0%
!!! TGCCATTTTTCTTTAAAGTG+AGG + chr8_4:50839641-50839660 Msa1331320:intron 30.0%
!!! GCCATTTTTCTTTAAAGTGA+GGG + chr8_4:50839642-50839661 Msa1331320:intron 30.0%
! TCCCTCACTTTAAAGAAAAA+TGG - chr8_4:50839646-50839665 None:intergenic 30.0%
ACGTTGTCCAATTTATGATT+TGG + chr8_4:50840347-50840366 Msa1331320:three_prime_UTR 30.0%
TTCCTTCCTTTCTTCAATCA+CGG + chr8_4:50836830-50836849 Msa1331320:five_prime_UTR 35.0%
!!! CTTGAAGAGTATTTTTGGGA+AGG - chr8_4:50836973-50836992 None:intergenic 35.0%
GAATAAATTCGAATCGTGCA+TGG - chr8_4:50837116-50837135 None:intergenic 35.0%
TGTGCTTGCTTATCTTGTTA+TGG + chr8_4:50837149-50837168 Msa1331320:intron 35.0%
! GTGCTTGCTTATCTTGTTAT+GGG + chr8_4:50837150-50837169 Msa1331320:intron 35.0%
GTATCCAATTACCTAAGTAC+AGG - chr8_4:50837384-50837403 None:intergenic 35.0%
AACAATTTCAGGGAGCAAAT+CGG - chr8_4:50837436-50837455 None:intergenic 35.0%
ATTTGCTCCCTGAAATTGTT+GGG + chr8_4:50837436-50837455 Msa1331320:intron 35.0%
ACCCAATGTCATTCGAAATA+AGG + chr8_4:50837640-50837659 Msa1331320:intron 35.0%
! CCCTTATTTCGAATGACATT+GGG - chr8_4:50837644-50837663 None:intergenic 35.0%
CCCAATGTCATTCGAAATAA+GGG + chr8_4:50837641-50837660 Msa1331320:intron 35.0%
! ACCCTTATTTCGAATGACAT+TGG - chr8_4:50837645-50837664 None:intergenic 35.0%
GCCTATTTGCAAATTTCAAG+CGG + chr8_4:50837673-50837692 Msa1331320:intron 35.0%
CCTATTTGCAAATTTCAAGC+GGG + chr8_4:50837674-50837693 Msa1331320:intron 35.0%
TGTTTACCCTTTGCAATTGA+GGG - chr8_4:50837768-50837787 None:intergenic 35.0%
TTGTTTACCCTTTGCAATTG+AGG - chr8_4:50837769-50837788 None:intergenic 35.0%
ATCATTTAAAAGAGAGCGGA+GGG - chr8_4:50837837-50837856 None:intergenic 35.0%
AATCATTTAAAAGAGAGCGG+AGG - chr8_4:50837838-50837857 None:intergenic 35.0%
! AAGTCAACAGTGATGATGAA+AGG + chr8_4:50838446-50838465 Msa1331320:CDS 35.0%
TAGGATTTGTAGAACCATCA+AGG + chr8_4:50838532-50838551 Msa1331320:intron 35.0%
AGGATTTGTAGAACCATCAA+GGG + chr8_4:50838533-50838552 Msa1331320:intron 35.0%
TGTGAATAGTTAGAGTGGTT+AGG + chr8_4:50839180-50839199 Msa1331320:intron 35.0%
GGAAGATCTTAAAGTAAAGG+AGG + chr8_4:50839486-50839505 Msa1331320:CDS 35.0%
ATGTCGGGTTATTGATCAAA+GGG - chr8_4:50839531-50839550 None:intergenic 35.0%
! TTTTGACACTGAAAGATGTC+GGG - chr8_4:50839546-50839565 None:intergenic 35.0%
! CTTTTGACACTGAAAGATGT+CGG - chr8_4:50839547-50839566 None:intergenic 35.0%
CATCTTTCAGTGTCAAAAGA+AGG + chr8_4:50839548-50839567 Msa1331320:CDS 35.0%
ATATGCAAATGGTCCATAAC+TGG + chr8_4:50839976-50839995 Msa1331320:intron 35.0%
AGATCATGACAGCAGATTAA+TGG - chr8_4:50840050-50840069 None:intergenic 35.0%
ATTTGTGCAGGAATTTCCTA+TGG - chr8_4:50840191-50840210 None:intergenic 35.0%
CTTACTTCATGTATTTGTGC+AGG - chr8_4:50840203-50840222 None:intergenic 35.0%
TCCTTCCTTTCTTCAATCAC+GGG + chr8_4:50836831-50836850 Msa1331320:five_prime_UTR 40.0%
! GTTTTCCCGTGATTGAAGAA+AGG - chr8_4:50836839-50836858 None:intergenic 40.0%
CAATCACGGGAAAACAAAGT+CGG + chr8_4:50836844-50836863 Msa1331320:five_prime_UTR 40.0%
! GATTTGCTCCCTGAAATTGT+TGG + chr8_4:50837435-50837454 Msa1331320:intron 40.0%
TTTGCTCCCTGAAATTGTTG+GGG + chr8_4:50837437-50837456 Msa1331320:intron 40.0%
TCGAATGACATTGGGTAACT+TGG - chr8_4:50837636-50837655 None:intergenic 40.0%
CCCGCTTGAAATTTGCAAAT+AGG - chr8_4:50837677-50837696 None:intergenic 40.0%
TTTACCCTTTGCAATTGAGG+GGG - chr8_4:50837766-50837785 None:intergenic 40.0%
GTTTACCCTTTGCAATTGAG+GGG - chr8_4:50837767-50837786 None:intergenic 40.0%
CACAGGATGAGTTAAAGAGA+AGG + chr8_4:50837960-50837979 Msa1331320:CDS 40.0%
ATGAGCTTGATGAACGTGAA+AGG + chr8_4:50837993-50838012 Msa1331320:CDS 40.0%
GGATTTACTCTTCAACCTTG+TGG + chr8_4:50838662-50838681 Msa1331320:intron 40.0%
TAAATGCATCCAGAGATGCT+AGG - chr8_4:50838780-50838799 None:intergenic 40.0%
! AATAAAGAAGGAAAGGGCAC+AGG + chr8_4:50838974-50838993 Msa1331320:CDS 40.0%
TGCCATTGAACCTCTTTAGA+TGG + chr8_4:50839042-50839061 Msa1331320:intron 40.0%
GCCATTGAACCTCTTTAGAT+GGG + chr8_4:50839043-50839062 Msa1331320:intron 40.0%
TCCCATCTAAAGAGGTTCAA+TGG - chr8_4:50839047-50839066 None:intergenic 40.0%
GTTCAATGTCCCATCTAAAG+AGG - chr8_4:50839055-50839074 None:intergenic 40.0%
TAGATGGGACATTGAACTTG+TGG + chr8_4:50839058-50839077 Msa1331320:intron 40.0%
AACACCTCTCTTAGGATAGA+AGG + chr8_4:50839085-50839104 Msa1331320:intron 40.0%
TCGGTTGTGAATAGTTAGAG+TGG + chr8_4:50839175-50839194 Msa1331320:intron 40.0%
! GTTGAAGGGGAAATCCTTTT+AGG + chr8_4:50839272-50839291 Msa1331320:intron 40.0%
GATGTCGGGTTATTGATCAA+AGG - chr8_4:50839532-50839551 None:intergenic 40.0%
GAACTGCTCACTTAACCAAA+AGG + chr8_4:50839591-50839610 Msa1331320:intron 40.0%
AGTGAGGGAGTCAATTCATT+CGG + chr8_4:50839657-50839676 Msa1331320:intron 40.0%
ACAGTAGTGCAATGGTCAAA+TGG - chr8_4:50839837-50839856 None:intergenic 40.0%
TGCATACAACAGTAGTGCAA+TGG - chr8_4:50839845-50839864 None:intergenic 40.0%
TTCAAGCGTTATTTGTGGTG+TGG + chr8_4:50839911-50839930 Msa1331320:intron 40.0%
! TAAAGTGGTTGGTCCAGTTA+TGG - chr8_4:50839992-50840011 None:intergenic 40.0%
GATTCATCAATGACACCATC+AGG + chr8_4:50840157-50840176 Msa1331320:CDS 40.0%
CCTATGGAAATCATTCCTGA+TGG - chr8_4:50840175-50840194 None:intergenic 40.0%
CCATCAGGAATGATTTCCAT+AGG + chr8_4:50840172-50840191 Msa1331320:CDS 40.0%
TGTCAGAAACCTGAGTTGTT+TGG + chr8_4:50840229-50840248 Msa1331320:three_prime_UTR 40.0%
TTGGAGCCTGAAGAAACTTA+TGG + chr8_4:50840248-50840267 Msa1331320:three_prime_UTR 40.0%
AATGTACTTGGGTACTTAGC+AGG + chr8_4:50840447-50840466 Msa1331320:three_prime_UTR 40.0%
TCCCGTGATTGAAGAAAGGA+AGG - chr8_4:50836835-50836854 None:intergenic 45.0%
AAAGGTGGAAACGAACAAGG+CGG + chr8_4:50836931-50836950 Msa1331320:CDS 45.0%
! CAAGGCGGTACTCGAATTTT+CGG + chr8_4:50836946-50836965 Msa1331320:CDS 45.0%
AACCTACCTAGGTTTGAGAG+TGG - chr8_4:50837013-50837032 None:intergenic 45.0%
TGCTTGACCCTTGCAATTTC+AGG + chr8_4:50837701-50837720 Msa1331320:intron 45.0%
TTGACCCTTGCAATTTCAGG+TGG + chr8_4:50837704-50837723 Msa1331320:intron 45.0%
! TGACCCTTGCAATTTCAGGT+GGG + chr8_4:50837705-50837724 Msa1331320:intron 45.0%
TTCCCCACCTGAAATTGCAA+GGG - chr8_4:50837711-50837730 None:intergenic 45.0%
ATTCCCCACCTGAAATTGCA+AGG - chr8_4:50837712-50837731 None:intergenic 45.0%
! TGCAATTTCAGGTGGGGAAT+TGG + chr8_4:50837712-50837731 Msa1331320:intron 45.0%
TTACCCTTTGCAATTGAGGG+GGG - chr8_4:50837765-50837784 None:intergenic 45.0%
CTGCCCGTCTTTCCTATAAA+AGG - chr8_4:50837936-50837955 None:intergenic 45.0%
! CTTTTATAGGAAAGACGGGC+AGG + chr8_4:50837934-50837953 Msa1331320:intron 45.0%
GTTCATCAAGCTCATCACGT+AGG - chr8_4:50837988-50838007 None:intergenic 45.0%
AGCTTGATGAACGTGAAAGG+AGG + chr8_4:50837996-50838015 Msa1331320:CDS 45.0%
TCCATGCTTTGACAGATGAC+AGG + chr8_4:50838179-50838198 Msa1331320:intron 45.0%
CCATGCTTTGACAGATGACA+GGG + chr8_4:50838180-50838199 Msa1331320:intron 45.0%
TTGACAGATGACAGGGATCA+TGG + chr8_4:50838187-50838206 Msa1331320:intron 45.0%
AGATGACAGGGATCATGGAA+GGG + chr8_4:50838192-50838211 Msa1331320:intron 45.0%
!!! GGCGGCCATCTATTTTTAGA+AGG + chr8_4:50838214-50838233 Msa1331320:CDS 45.0%
TCTATTGGCCAGTTTCCCAT+AGG + chr8_4:50838626-50838645 Msa1331320:intron 45.0%
CCAAATGACCTATGGGAAAC+TGG - chr8_4:50838637-50838656 None:intergenic 45.0%
CCAGTTTCCCATAGGTCATT+TGG + chr8_4:50838634-50838653 Msa1331320:intron 45.0%
CCTGCAACCAAATGACCTAT+GGG - chr8_4:50838644-50838663 None:intergenic 45.0%
TCCTGCAACCAAATGACCTA+TGG - chr8_4:50838645-50838664 None:intergenic 45.0%
! TTTTGTGAGCCTAGCATCTC+TGG + chr8_4:50838768-50838787 Msa1331320:intron 45.0%
ACCTCTCTTAGGATAGAAGG+AGG + chr8_4:50839088-50839107 Msa1331320:intron 45.0%
TCCTCCTTCTATCCTAAGAG+AGG - chr8_4:50839092-50839111 None:intergenic 45.0%
GCAGGAACAACAACAACAAG+AGG + chr8_4:50839465-50839484 Msa1331320:intron 45.0%
GTAGTGCAATGGTCAAATGG+CGG - chr8_4:50839834-50839853 None:intergenic 45.0%
CTCGAACAGTAGTGCACAAT+TGG + chr8_4:50839945-50839964 Msa1331320:intron 45.0%
! GTATAGGTGGGATGATGATG+TGG + chr8_4:50840092-50840111 Msa1331320:intron 45.0%
GTGTTCAAAAATCAAGCCCG+TGG + chr8_4:50840114-50840133 Msa1331320:CDS 45.0%
TTGGGTACTTAGCAGGTTAG+AGG + chr8_4:50840454-50840473 Msa1331320:three_prime_UTR 45.0%
TGTTCGTTTCCACCTTTGGC+CGG - chr8_4:50836928-50836947 None:intergenic 50.0%
GCCAAAGGTGGAAACGAACA+AGG + chr8_4:50836928-50836947 Msa1331320:CDS 50.0%
! GCCTTGTTCGTTTCCACCTT+TGG - chr8_4:50836932-50836951 None:intergenic 50.0%
CACCACTCTCAAACCTAGGT+AGG + chr8_4:50837008-50837027 Msa1331320:intron 50.0%
TTGGGGGGAAAAACCTACCT+AGG - chr8_4:50837024-50837043 None:intergenic 50.0%
CTCCCTGAAATTGTTGGGGT+CGG + chr8_4:50837441-50837460 Msa1331320:intron 50.0%
TCCCTGAAATTGTTGGGGTC+GGG + chr8_4:50837442-50837461 Msa1331320:intron 50.0%
! GACCCTTGCAATTTCAGGTG+GGG + chr8_4:50837706-50837725 Msa1331320:intron 50.0%
GAGAGCGGAGGGTTAGAAAA+GGG - chr8_4:50837826-50837845 None:intergenic 50.0%
AGAGAGCGGAGGGTTAGAAA+AGG - chr8_4:50837827-50837846 None:intergenic 50.0%
CCCTGTCATCTGTCAAAGCA+TGG - chr8_4:50838183-50838202 None:intergenic 50.0%
CAGATGACAGGGATCATGGA+AGG + chr8_4:50838191-50838210 Msa1331320:intron 50.0%
GATGACAGGGATCATGGAAG+GGG + chr8_4:50838193-50838212 Msa1331320:intron 50.0%
TCATCTGCATCAACACTGCG+TGG - chr8_4:50838415-50838434 None:intergenic 50.0%
CCCATAGGTCATTTGGTTGC+AGG + chr8_4:50838641-50838660 Msa1331320:intron 50.0%
GGATGACACTGAAGCTTTGC+TGG + chr8_4:50838938-50838957 Msa1331320:CDS 50.0%
GTGGTCGTAACACCTCTCTT+AGG + chr8_4:50839077-50839096 Msa1331320:intron 50.0%
TTGCGAGCTTGGTTTCTCCA+CGG - chr8_4:50840134-50840153 None:intergenic 50.0%
GATGAATCGCTTTGCGAGCT+TGG - chr8_4:50840145-50840164 None:intergenic 50.0%
CTTCAGGCTCCAAACAACTC+AGG - chr8_4:50840241-50840260 None:intergenic 50.0%
CGCACACCACTCTCAAACCT+AGG + chr8_4:50837004-50837023 Msa1331320:CDS 55.0%
GCCCGACCCCAACAATTTCA+GGG - chr8_4:50837446-50837465 None:intergenic 55.0%
TGCCCGACCCCAACAATTTC+AGG - chr8_4:50837447-50837466 None:intergenic 55.0%
TTTGCAATTGAGGGGGGTGG+GGG - chr8_4:50837759-50837778 None:intergenic 55.0%
CTTTGCAATTGAGGGGGGTG+GGG - chr8_4:50837760-50837779 None:intergenic 55.0%
CCTTTGCAATTGAGGGGGGT+GGG - chr8_4:50837761-50837780 None:intergenic 55.0%
CCACCCCCCTCAATTGCAAA+GGG + chr8_4:50837759-50837778 Msa1331320:intron 55.0%
GAAAGACGGGCAGGATACAC+AGG + chr8_4:50837943-50837962 Msa1331320:CDS 55.0%
! CAGTGATGACGACGACGATG+AGG + chr8_4:50838917-50838936 Msa1331320:intron 55.0%
AAGGAGGCAGAGCTTATGCG+TGG + chr8_4:50839502-50839521 Msa1331320:CDS 55.0%
TGCGAGCTTGGTTTCTCCAC+GGG - chr8_4:50840133-50840152 None:intergenic 55.0%
GACCGCCGCTAGACCAACAT+GGG + chr8_4:50836900-50836919 Msa1331320:CDS 60.0%
! TGCCCATGTTGGTCTAGCGG+CGG - chr8_4:50836905-50836924 None:intergenic 60.0%
! CGGTGCCCATGTTGGTCTAG+CGG - chr8_4:50836908-50836927 None:intergenic 60.0%
CGCTAGACCAACATGGGCAC+CGG + chr8_4:50836906-50836925 Msa1331320:CDS 60.0%
CCCACCCCCCTCAATTGCAA+AGG + chr8_4:50837758-50837777 Msa1331320:intron 60.0%
CCCTTTGCAATTGAGGGGGG+TGG - chr8_4:50837762-50837781 None:intergenic 60.0%
GACAGGGATCATGGAAGGGG+CGG + chr8_4:50838196-50838215 Msa1331320:CDS 60.0%
GGCACAGGAAAAGCTGCGCA+AGG + chr8_4:50838989-50839008 Msa1331320:CDS 60.0%
GGTCTAGCGGCGGTCGTCAT+CGG - chr8_4:50836895-50836914 None:intergenic 65.0%
CGACCGCCGCTAGACCAACA+TGG + chr8_4:50836899-50836918 Msa1331320:CDS 65.0%
CCTTTGGCCGGTGCCCATGT+TGG - chr8_4:50836916-50836935 None:intergenic 65.0%
!! CCAACATGGGCACCGGCCAA+AGG + chr8_4:50836913-50836932 Msa1331320:CDS 65.0%
!! ACATGGGCACCGGCCAAAGG+TGG + chr8_4:50836916-50836935 Msa1331320:CDS 65.0%
CGGCGGTCGTCATCGGATCG+AGG - chr8_4:50836888-50836907 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 50836817 50840515 50836817 ID=Msa1331320;Name=Msa1331320
chr8_4 mRNA 50836817 50840515 50836817 ID=Msa1331320-mRNA-1;Parent=Msa1331320;Name=Msa1331320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=78|1|1|1|1|1|7|294|227
chr8_4 exon 50836817 50837025 50836817 ID=Msa1331320-mRNA-1:exon:14886;Parent=Msa1331320-mRNA-1
chr8_4 exon 50837943 50838049 50837943 ID=Msa1331320-mRNA-1:exon:14887;Parent=Msa1331320-mRNA-1
chr8_4 exon 50838194 50838235 50838194 ID=Msa1331320-mRNA-1:exon:14888;Parent=Msa1331320-mRNA-1
chr8_4 exon 50838380 50838467 50838380 ID=Msa1331320-mRNA-1:exon:14889;Parent=Msa1331320-mRNA-1
chr8_4 exon 50838920 50839010 50838920 ID=Msa1331320-mRNA-1:exon:14890;Parent=Msa1331320-mRNA-1
chr8_4 exon 50839469 50839569 50839469 ID=Msa1331320-mRNA-1:exon:14891;Parent=Msa1331320-mRNA-1
chr8_4 exon 50840098 50840515 50840098 ID=Msa1331320-mRNA-1:exon:14892;Parent=Msa1331320-mRNA-1
chr8_4 five_prime_UTR 50836817 50836894 50836817 ID=Msa1331320-mRNA-1:five_prime_utr;Parent=Msa1331320-mRNA-1
chr8_4 CDS 50836895 50837025 50836895 ID=Msa1331320-mRNA-1:cds;Parent=Msa1331320-mRNA-1
chr8_4 CDS 50837943 50838049 50837943 ID=Msa1331320-mRNA-1:cds;Parent=Msa1331320-mRNA-1
chr8_4 CDS 50838194 50838235 50838194 ID=Msa1331320-mRNA-1:cds;Parent=Msa1331320-mRNA-1
chr8_4 CDS 50838380 50838467 50838380 ID=Msa1331320-mRNA-1:cds;Parent=Msa1331320-mRNA-1
chr8_4 CDS 50838920 50839010 50838920 ID=Msa1331320-mRNA-1:cds;Parent=Msa1331320-mRNA-1
chr8_4 CDS 50839469 50839569 50839469 ID=Msa1331320-mRNA-1:cds;Parent=Msa1331320-mRNA-1
chr8_4 CDS 50840098 50840221 50840098 ID=Msa1331320-mRNA-1:cds;Parent=Msa1331320-mRNA-1
chr8_4 three_prime_UTR 50840222 50840515 50840222 ID=Msa1331320-mRNA-1:three_prime_utr;Parent=Msa1331320-mRNA-1
Gene Sequence

>Msa1331320

ATGACGACCGCCGCTAGACCAACATGGGCACCGGCCAAAGGTGGAAACGAACAAGGCGGTACTCGAATTTTCGGTCCTTCCCAAAAATACTCTTCAAGAGATATCGCATCGCACACCACTCTCAAACCTAGGAAAGACGGGCAGGATACACAGGATGAGTTAAAGAGAAGGAACCTACGTGATGAGCTTGATGAACGTGAAAGGAGGCACTTCTCATCAAAAAATAAATCGTATAATGATGACAGGGATCATGGAAGGGGCGGCCATCTATTTTTAGAAGGAACAAAAAGAGACATTGAAGACAACATCATTCCACGCAGTGTTGATGCAGATGATTCTGACGTTGAAGTCAACAGTGATGATGAAAGTGATGACGACGACGATGAGGATGACACTGAAGCTTTGCTGGCTGAGCTTGAACAAATAAAGAAGGAAAGGGCACAGGAAAAGCTGCGCAAGGAACAACAACAACAAGAGGAAGATCTTAAAGTAAAGGAGGCAGAGCTTATGCGTGGAAACCCTTTGATCAATAACCCGACATCTTTCAGTGTCAAAAGAAGGTGGGATGATGATGTGGTGTTCAAAAATCAAGCCCGTGGAGAAACCAAGCTCGCAAAGCGATTCATCAATGACACCATCAGGAATGATTTCCATAGGAAATTCCTGCACAAATACATGAAGTAA

Protein sequence

>Msa1331320

MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDIASHTTLKPRKDGQDTQDELKRRNLRDELDERERRHFSSKNKSYNDDRDHGRGGHLFLEGTKRDIEDNIIPRSVDADDSDVEVNSDDESDDDDDEDDTEALLAELEQIKKERAQEKLRKEQQQQEEDLKVKEAELMRGNPLINNPTSFSVKRRWDDDVVFKNQARGETKLAKRFINDTIRNDFHRKFLHKYMK*