AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0291500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291500 MtrunA17_Chr0c02g0489651 96.711 152 5 0 1 152 2 153 6.46e-101 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0291500 AT1G79200.1 70.270 74 22 0 79 152 85 158 1.63e-34 118

Find 47 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATATGCGTAGGTAAAT+TGG 0.229573 2_3:+40092656 Msa0291500:five_prime_UTR
CGCCTCGCACAGCCCATAAA+TGG 0.229703 2_3:+40098943 Msa0291500:CDS
CTACTACCGTAATCAAATTC+TGG 0.236661 2_3:+40092685 Msa0291500:five_prime_UTR
TTGGTTTCAACTTTCAATTT+TGG 0.249141 2_3:+40092757 Msa0291500:five_prime_UTR
ACCCTTATCATATTTATCTT+TGG 0.255453 2_3:-40093498 None:intergenic
CATAAAGACACAAGGGAAAT+TGG 0.265284 2_3:-40099296 None:intergenic
AACAAAGGGTTTATAGAGAT+TGG 0.299376 2_3:-40099008 None:intergenic
ACATTTGTCTTACATGATAA+AGG 0.311477 2_3:+40099383 Msa0291500:three_prime_UTR
GGTAGCAAACTCATTATTCT+TGG 0.322349 2_3:-40098787 None:intergenic
CTGCTTGAGTTTGAATTTGA+AGG 0.328219 2_3:-40092725 None:intergenic
CAGAATTTGATTACGGTAGT+AGG 0.329073 2_3:-40092684 None:intergenic
TTTGTCAAAGCTTGGAATAA+AGG 0.336053 2_3:+40098882 Msa0291500:CDS
GACAAATGTGGCACACATAT+TGG 0.389618 2_3:-40099369 None:intergenic
ACTCAAGCAGAGTACTTGTT+TGG 0.398764 2_3:+40092738 Msa0291500:five_prime_UTR
TTCCAAAGATAAATATGATA+AGG 0.406737 2_3:+40093496 Msa0291500:CDS
AGGAAAAGAAGAGCAGAAAG+AGG 0.409042 2_3:+40093441 Msa0291500:CDS
TACTACCGTAATCAAATTCT+GGG 0.418107 2_3:+40092686 Msa0291500:five_prime_UTR
GTTGTTAGTAACTGTTACAT+AGG 0.419631 2_3:-40099038 None:intergenic
TTGCAGAATTTGTCAAAGCT+TGG 0.436101 2_3:+40098874 Msa0291500:CDS
GTGTTCCCAGAATTTGATTA+CGG 0.449000 2_3:-40092691 None:intergenic
AGAGGGAAAAGAAAGAGAAA+AGG 0.452527 2_3:+40093459 Msa0291500:CDS
TCCAAAGATAAATATGATAA+GGG 0.457676 2_3:+40093497 Msa0291500:CDS
GCCTTACCGATTCACACAAC+AGG 0.473615 2_3:-40099331 None:intergenic
GTATCAATCTTTAAGTGTGT+TGG 0.492368 2_3:+40099122 Msa0291500:three_prime_UTR
TTAAGTGTGTTGGTTGTTCG+CGG 0.503849 2_3:+40099132 Msa0291500:three_prime_UTR
ATTCTTCTCTTCTTTCAGCC+AGG 0.510461 2_3:-40098808 None:intergenic
ACATAGGAAATCTAAACAAA+GGG 0.515262 2_3:-40099022 None:intergenic
CTTGAATCGAATTACTATGA+AGG 0.515517 2_3:+40098909 Msa0291500:CDS
GGAAAAGAAAGAGAAAAGGA+AGG 0.519175 2_3:+40093463 Msa0291500:CDS
GGAAAAGAAGAGCAGAAAGA+GGG 0.525731 2_3:+40093442 Msa0291500:CDS
AGAATAATGAGTTTGCTACC+TGG 0.553697 2_3:+40098790 Msa0291500:CDS
GCCTGTTGTGTGAATCGGTA+AGG 0.562152 2_3:+40099330 Msa0291500:three_prime_UTR
AGTGTGCCTGTTGTGTGAAT+CGG 0.571109 2_3:+40099325 Msa0291500:three_prime_UTR
TACATAGGAAATCTAAACAA+AGG 0.572493 2_3:-40099023 None:intergenic
CAGATGAGAAGAAAAGCAAG+AGG 0.577750 2_3:+40093396 Msa0291500:intron
GAGAACTGTAGATGATGATG+AGG 0.580911 2_3:+40093421 Msa0291500:CDS
TTCCATTTATGGGCTGTGCG+AGG 0.589094 2_3:-40098945 None:intergenic
CTTGGCAAAATAGTCATCAC+CGG 0.597107 2_3:-40098769 None:intergenic
CCTTCAGATTCGGATTGCGA+AGG 0.611110 2_3:-40092820 None:intergenic
CTGATTCACATAAAGACACA+AGG 0.611622 2_3:-40099304 None:intergenic
TCAGGTTATGATTTGCAGAG+TGG 0.620648 2_3:+40099261 Msa0291500:three_prime_UTR
GGTTATGATTTGCAGAGTGG+CGG 0.623089 2_3:+40099264 Msa0291500:three_prime_UTR
CAGCAAAAGTGAAAGAAACA+TGG 0.625791 2_3:+40098043 Msa0291500:CDS
CCTTCGCAATCCGAATCTGA+AGG 0.628237 2_3:+40092820 Msa0291500:CDS
ATATTGGTTAATATGTGTAG+TGG 0.632221 2_3:-40099353 None:intergenic
TTTATCATGTAAGACAAATG+TGG 0.660289 2_3:-40099381 None:intergenic
TGATTCACATAAAGACACAA+GGG 0.707752 2_3:-40099303 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAATTTTTTTTAATA+GGG - chr2_3:40093117-40093136 None:intergenic 0.0%
!!! AAATTTTAATTTTTTTTAAT+AGG - chr2_3:40093118-40093137 None:intergenic 0.0%
!! TATTAAAAAAAATTAAAATT+TGG + chr2_3:40093117-40093136 Msa0291500:intron 0.0%
!! TATATATATATATATATATA+GGG - chr2_3:40096371-40096390 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr2_3:40096372-40096391 None:intergenic 0.0%
!! CATATATATATATATATTTG+TGG - chr2_3:40092645-40092664 None:intergenic 10.0%
!! TATTAGTATAAATTGTTAAT+AGG + chr2_3:40093041-40093060 Msa0291500:intron 10.0%
!!! TTTTAATTTTTTTTAATAGG+GGG - chr2_3:40093292-40093311 None:intergenic 10.0%
!!! TTTTAATTTTTTTTAATAGG+GGG + chr2_3:40093292-40093311 Msa0291500:intron 10.0%
!!! ATAAAAGTTTTACTTAATTA+AGG + chr2_3:40095004-40095023 Msa0291500:intron 10.0%
!! TATATATATATATATATAGG+GGG - chr2_3:40096369-40096388 None:intergenic 10.0%
!! AAATATATTTCCAAAATTAA+TGG + chr2_3:40096619-40096638 Msa0291500:intron 10.0%
!! AATATATTTCCAAAATTAAT+GGG + chr2_3:40096620-40096639 Msa0291500:intron 10.0%
!! GAAACAAAAAAAAAAAAAAA+AGG + chr2_3:40099233-40099252 Msa0291500:three_prime_UTR 10.0%
!! AACAAAAAAAAAAAAAAAAG+GGG + chr2_3:40099235-40099254 Msa0291500:three_prime_UTR 10.0%
!! ATATATATATATATATGCGT+AGG + chr2_3:40092648-40092667 Msa0291500:five_prime_UTR 15.0%
!! TGGAATAAAAGTAAATAATT+AGG + chr2_3:40092906-40092925 Msa0291500:intron 15.0%
!! TCAAAATAGTGAAATTAAAT+TGG + chr2_3:40092987-40093006 Msa0291500:intron 15.0%
!! CAAAATAGTGAAATTAAATT+GGG + chr2_3:40092988-40093007 Msa0291500:intron 15.0%
!! TAAAAATTTAACATTGAGAT+GGG - chr2_3:40095682-40095701 None:intergenic 15.0%
!! AGATTAATTACAAAAACATT+AGG + chr2_3:40095829-40095848 Msa0291500:intron 15.0%
!!! AATACCTATAAATCATTTTT+AGG + chr2_3:40096518-40096537 Msa0291500:intron 15.0%
!! TAAACCTAAAAATGATTTAT+AGG - chr2_3:40096525-40096544 None:intergenic 15.0%
!! TATGTTCTGATAAAAAAAAA+GGG - chr2_3:40097328-40097347 None:intergenic 15.0%
!! ATATGTTCTGATAAAAAAAA+AGG - chr2_3:40097329-40097348 None:intergenic 15.0%
!! AAATCCAAACATATTAAAAA+AGG + chr2_3:40098598-40098617 Msa0291500:intron 15.0%
!! ACAAAAAAAAAAAAAAAAGG+GGG + chr2_3:40099236-40099255 Msa0291500:three_prime_UTR 15.0%
!!! TTGTGGTTTTTTATTTTGTT+TGG - chr2_3:40092628-40092647 None:intergenic 20.0%
!! TTCCAAAGATAAATATGATA+AGG + chr2_3:40093496-40093515 Msa0291500:CDS 20.0%
!! TCCAAAGATAAATATGATAA+GGG + chr2_3:40093497-40093516 Msa0291500:CDS 20.0%
!! ATTTCTGTAACAAAATCAAA+TGG + chr2_3:40093616-40093635 Msa0291500:intron 20.0%
!! AGTAGTTAGTAATGATTAAT+TGG + chr2_3:40093719-40093738 Msa0291500:intron 20.0%
!! TATTCTAAACAAAAGAACAT+TGG + chr2_3:40094053-40094072 Msa0291500:intron 20.0%
!!! TCCTTGAATCTTTTATATAT+AGG + chr2_3:40094280-40094299 Msa0291500:intron 20.0%
!!! CCTTGAATCTTTTATATATA+GGG + chr2_3:40094281-40094300 Msa0291500:intron 20.0%
!!! CTTGAATCTTTTATATATAG+GGG + chr2_3:40094282-40094301 Msa0291500:intron 20.0%
!!! TTGAATCTTTTATATATAGG+GGG + chr2_3:40094283-40094302 Msa0291500:intron 20.0%
!! AAACCATGTATTTAATCTAA+AGG - chr2_3:40096290-40096309 None:intergenic 20.0%
!! GAATTCTGTATATATAGAAA+TGG + chr2_3:40094897-40094916 Msa0291500:intron 20.0%
!! GTAGTTAAAATATGTTCATT+GGG + chr2_3:40095026-40095045 Msa0291500:intron 20.0%
!! AAATATGGTGTGTAATTAAT+TGG + chr2_3:40095087-40095106 Msa0291500:intron 20.0%
!!! TTTGTATCAGTAACATATTT+TGG - chr2_3:40095218-40095237 None:intergenic 20.0%
!!! TGATACAAAAGCTTTATAAA+AGG + chr2_3:40095229-40095248 Msa0291500:intron 20.0%
!! CTAAAAATTTAACATTGAGA+TGG - chr2_3:40095683-40095702 None:intergenic 20.0%
!! TCATCAATTCTTTAAACATT+AGG + chr2_3:40095852-40095871 Msa0291500:intron 20.0%
!!! AAATCTCAATTTTATTGTCT+CGG - chr2_3:40096070-40096089 None:intergenic 20.0%
!! AAAATTGAGATTTAAGAAGA+AGG + chr2_3:40096077-40096096 Msa0291500:intron 20.0%
!! AAACCATGTATTTAATCTAA+AGG + chr2_3:40096290-40096309 Msa0291500:intron 20.0%
!!! AAAATGATTGCTTAATGTTT+TGG - chr2_3:40096465-40096484 None:intergenic 20.0%
!!! CTACTTTTAAATACATTTTC+AGG - chr2_3:40097049-40097068 None:intergenic 20.0%
!! CTGAAAATGTATTTAAAAGT+AGG + chr2_3:40097047-40097066 Msa0291500:intron 20.0%
!! AAAATGTATTTAAAAGTAGG+AGG + chr2_3:40097050-40097069 Msa0291500:intron 20.0%
!! TACTATCTTAAAAATTGAGT+TGG - chr2_3:40097119-40097138 None:intergenic 20.0%
!! TCATAGAAATGAAGTTATAT+TGG + chr2_3:40097866-40097885 Msa0291500:intron 20.0%
!!! GCTGTTATATTTTCTTTTTA+CGG + chr2_3:40098175-40098194 Msa0291500:intron 20.0%
!!! AGGGAAATTTTTATTAAGTA+AGG + chr2_3:40098361-40098380 Msa0291500:intron 20.0%
!!! TTTTAATATGTTTGGATTTG+CGG - chr2_3:40098597-40098616 None:intergenic 20.0%
!!! TGTTCCTTTTTTAATATGTT+TGG - chr2_3:40098605-40098624 None:intergenic 20.0%
!!! CATATCTTTATTTCAAATGT+AGG + chr2_3:40098731-40098750 Msa0291500:intron 20.0%
!!! CTTTTTGATTTTCCATTTAT+GGG - chr2_3:40098958-40098977 None:intergenic 20.0%
!!! ACTTTTTGATTTTCCATTTA+TGG - chr2_3:40098959-40098978 None:intergenic 20.0%
! ATATATATGCGTAGGTAAAT+TGG + chr2_3:40092656-40092675 Msa0291500:five_prime_UTR 25.0%
!! TTGGTTTCAACTTTCAATTT+TGG + chr2_3:40092757-40092776 Msa0291500:five_prime_UTR 25.0%
!!! AAAAAAAGTACCTTCAGATT+CGG - chr2_3:40092833-40092852 None:intergenic 25.0%
! AAAAAAATGGCAGAATGAAA+AGG - chr2_3:40092877-40092896 None:intergenic 25.0%
! TCCAATACACAGTAAAAAAA+TGG - chr2_3:40092890-40092909 None:intergenic 25.0%
!!! TTAGCCTTGTTAATAATGTT+AGG + chr2_3:40093359-40093378 Msa0291500:intron 25.0%
! AACACCTAACATTATTAACA+AGG - chr2_3:40093366-40093385 None:intergenic 25.0%
! ACCCTTATCATATTTATCTT+TGG - chr2_3:40093501-40093520 None:intergenic 25.0%
! TAAATTTGATTCAGACTCTT+AGG + chr2_3:40093549-40093568 Msa0291500:intron 25.0%
! GATACATGATTGTAAAACAA+AGG - chr2_3:40093778-40093797 None:intergenic 25.0%
!!! TTGGATTTCATTTTTGTTAG+TGG + chr2_3:40093823-40093842 Msa0291500:intron 25.0%
!!! TGGATTTCATTTTTGTTAGT+GGG + chr2_3:40093824-40093843 Msa0291500:intron 25.0%
! TTACCAATTTACAAATGTCT+AGG - chr2_3:40093929-40093948 None:intergenic 25.0%
!! TATCACTATCTAGTTTGATA+TGG + chr2_3:40094088-40094107 Msa0291500:intron 25.0%
! TTGAATGTAGAATTCATGTT+AGG + chr2_3:40094252-40094271 Msa0291500:intron 25.0%
! CCCTATATATAAAAGATTCA+AGG - chr2_3:40094284-40094303 None:intergenic 25.0%
! ATTGAGATTTAAGAAGAAGA+AGG - chr2_3:40094575-40094594 None:intergenic 25.0%
!! AAATCTCAATTTTATTGTCC+TGG + chr2_3:40094585-40094604 Msa0291500:intron 25.0%
! ACAAACAAAATTGAAACAAG+CGG + chr2_3:40094667-40094686 Msa0291500:intron 25.0%
! GGTAGTTAAAATATGTTCAT+TGG + chr2_3:40095025-40095044 Msa0291500:intron 25.0%
! TTGTACTAAAATATCTTCAC+AGG + chr2_3:40095137-40095156 Msa0291500:intron 25.0%
! GGTGTAATTATATGGATATT+TGG - chr2_3:40095410-40095429 None:intergenic 25.0%
! TTAAAGGACAATTGACATTT+GGG - chr2_3:40095656-40095675 None:intergenic 25.0%
! TTTAAAGGACAATTGACATT+TGG - chr2_3:40095554-40095573 None:intergenic 25.0%
!!! TTTTTAGCATTTCAAGTGTT+CGG + chr2_3:40095696-40095715 Msa0291500:intron 25.0%
! TTTAAACATTAGGTCTTCTA+AGG + chr2_3:40095862-40095881 Msa0291500:intron 25.0%
!! AAACAACTTTTCATCTTTAC+CGG + chr2_3:40095936-40095955 Msa0291500:intron 25.0%
! GATATTCTACATTATAGAAC+TGG - chr2_3:40096488-40096507 None:intergenic 25.0%
! TTCTATAATGTAGAATATCC+AGG + chr2_3:40096489-40096508 Msa0291500:intron 25.0%
!! ATACTTTGTCCCATTAATTT+TGG - chr2_3:40096632-40096651 None:intergenic 25.0%
! TTATGTTTGATTGGATATAC+TGG + chr2_3:40096804-40096823 Msa0291500:intron 25.0%
! TATGTTTGATTGGATATACT+GGG + chr2_3:40096805-40096824 Msa0291500:intron 25.0%
!! GTATCCTTCTTTTTACATAT+CGG + chr2_3:40097072-40097091 Msa0291500:intron 25.0%
! AAAACCGATATGTAAAAAGA+AGG - chr2_3:40097079-40097098 None:intergenic 25.0%
!!! TTTTTACATATCGGTTTTGT+AGG + chr2_3:40097081-40097100 Msa0291500:intron 25.0%
!! ATCAGAACATATCTAAGATA+AGG + chr2_3:40097138-40097157 Msa0291500:intron 25.0%
!! TCAGAACATATCTAAGATAA+GGG + chr2_3:40097139-40097158 Msa0291500:intron 25.0%
! TCCTAATTATAAACACATCT+CGG - chr2_3:40097464-40097483 None:intergenic 25.0%
!! ACAAAATCGATTTATAAGGT+GGG - chr2_3:40097533-40097552 None:intergenic 25.0%
!!! ACCTTATAAATCGATTTTGT+CGG + chr2_3:40097533-40097552 Msa0291500:intron 25.0%
!! ACCTTATAAGTCAATTTTGT+AGG + chr2_3:40097572-40097591 Msa0291500:intron 25.0%
!! GACATTTTATAATCATATGC+AGG + chr2_3:40097899-40097918 Msa0291500:intron 25.0%
! GCATTATTAGTAGTAGTATT+GGG - chr2_3:40098086-40098105 None:intergenic 25.0%
! AGCATTATTAGTAGTAGTAT+TGG - chr2_3:40098087-40098106 None:intergenic 25.0%
!! GTGATAAAAGATTTTTCTTC+TGG - chr2_3:40098114-40098133 None:intergenic 25.0%
! AAAATATAACAGCACCAAAA+AGG - chr2_3:40098168-40098187 None:intergenic 25.0%
! TATAAACAAATTCAGCAGAA+AGG - chr2_3:40098259-40098278 None:intergenic 25.0%
!!! AGACTTCTTTTGAAAAATTG+TGG + chr2_3:40098335-40098354 Msa0291500:intron 25.0%
!!! TTTTGAAAAATTGTGGATGA+GGG + chr2_3:40098342-40098361 Msa0291500:intron 25.0%
! ATTAAGTAAGGTGACATTAA+TGG + chr2_3:40098373-40098392 Msa0291500:intron 25.0%
! GACTACTTCATATAAATAAC+AGG - chr2_3:40098659-40098678 None:intergenic 25.0%
!! TTATTTATCTAGTGGTTTGT+TGG + chr2_3:40098699-40098718 Msa0291500:intron 25.0%
! ACATAGGAAATCTAAACAAA+GGG - chr2_3:40099025-40099044 None:intergenic 25.0%
! TACATAGGAAATCTAAACAA+AGG - chr2_3:40099026-40099045 None:intergenic 25.0%
!! CTTTTTACACCTTTTCTTTT+TGG - chr2_3:40099195-40099214 None:intergenic 25.0%
!! ATATTGGTTAATATGTGTAG+TGG - chr2_3:40099356-40099375 None:intergenic 25.0%
! TTTATCATGTAAGACAAATG+TGG - chr2_3:40099384-40099403 None:intergenic 25.0%
! ACATTTGTCTTACATGATAA+AGG + chr2_3:40099383-40099402 Msa0291500:three_prime_UTR 25.0%
TACTACCGTAATCAAATTCT+GGG + chr2_3:40092686-40092705 Msa0291500:five_prime_UTR 30.0%
! TTTCAATTTTGGATCGATCA+TGG + chr2_3:40092768-40092787 Msa0291500:exon 30.0%
! TTCAATTTTGGATCGATCAT+GGG + chr2_3:40092769-40092788 Msa0291500:exon 30.0%
!!! GCCATTTTTTTACTGTGTAT+TGG + chr2_3:40092886-40092905 Msa0291500:intron 30.0%
!!! GCAACATTTTGAAACTTAAG+GGG - chr2_3:40093084-40093103 None:intergenic 30.0%
!!! CGCAACATTTTGAAACTTAA+GGG - chr2_3:40093085-40093104 None:intergenic 30.0%
!!! TCGCAACATTTTGAAACTTA+AGG - chr2_3:40093086-40093105 None:intergenic 30.0%
! GTTTCAAAATGTTGCGATTT+TGG + chr2_3:40093089-40093108 Msa0291500:intron 30.0%
!!! TCAACAATTTTGAAACGCAA+GGG - chr2_3:40093144-40093163 None:intergenic 30.0%
TTTACAAATAGGTGCGATTA+TGG - chr2_3:40093195-40093214 None:intergenic 30.0%
GCACCTATTTGTAAAGATAA+GGG + chr2_3:40093200-40093219 Msa0291500:intron 30.0%
CACCTATTTGTAAAGATAAG+GGG + chr2_3:40093201-40093220 Msa0291500:intron 30.0%
AAGCATATTTCCCTTATGTT+AGG + chr2_3:40093229-40093248 Msa0291500:intron 30.0%
AGCATATTTCCCTTATGTTA+GGG + chr2_3:40093230-40093249 Msa0291500:intron 30.0%
AGAGTATATTTCCCTAAACA+TGG + chr2_3:40093260-40093279 Msa0291500:intron 30.0%
TATATTTCCCTAAACATGGA+GGG + chr2_3:40093264-40093283 Msa0291500:intron 30.0%
!! GTTGTTTCTATAAGCTATCT+TGG + chr2_3:40093658-40093677 Msa0291500:intron 30.0%
TATAGCAATAAGCTACCAAA+AGG + chr2_3:40093687-40093706 Msa0291500:intron 30.0%
ATAGCAATAAGCTACCAAAA+GGG + chr2_3:40093688-40093707 Msa0291500:intron 30.0%
ATACGCATAAATAGATTGTC+TGG + chr2_3:40093851-40093870 Msa0291500:intron 30.0%
CAATTTACAAATGTCTAGGT+TGG - chr2_3:40093925-40093944 None:intergenic 30.0%
CAACCTAGACATTTGTAAAT+TGG + chr2_3:40093923-40093942 Msa0291500:intron 30.0%
!!! AAGCAATGTTGTTTTCAAAC+TGG + chr2_3:40093971-40093990 Msa0291500:intron 30.0%
!!! TGTTGTTTTCAAACTGGTTT+AGG + chr2_3:40093977-40093996 Msa0291500:intron 30.0%
!! TTTTCAAACTGGTTTAGGTT+GGG + chr2_3:40093982-40094001 Msa0291500:intron 30.0%
! ACTATCTAGTTTGATATGGA+GGG + chr2_3:40094092-40094111 Msa0291500:intron 30.0%
!! TAGTTTTTCTAGGAATCAAG+AGG + chr2_3:40094147-40094166 Msa0291500:intron 30.0%
! ATGTCTATTGACTAGATCAT+TGG - chr2_3:40094213-40094232 None:intergenic 30.0%
! TTTTTAAATGAGAGGATGAG+AGG + chr2_3:40094324-40094343 Msa0291500:intron 30.0%
CAGCCTTTAGATTAAATACA+TGG + chr2_3:40094356-40094375 Msa0291500:intron 30.0%
GTAGAGATTTAAGTGAATCT+GGG - chr2_3:40094630-40094649 None:intergenic 30.0%
TGTAGAGATTTAAGTGAATC+TGG - chr2_3:40094631-40094650 None:intergenic 30.0%
GGAAACGAAATTGAAATAAG+CGG + chr2_3:40094688-40094707 Msa0291500:intron 30.0%
TTCAGAAATTCAAACAGAGA+TGG - chr2_3:40094874-40094893 None:intergenic 30.0%
GAAATGGATAATGAAGAGAT+TGG + chr2_3:40094913-40094932 Msa0291500:intron 30.0%
TTATATTCCAAAGTGTATGC+AGG - chr2_3:40094988-40095007 None:intergenic 30.0%
ACAGGGAAACTGTTAAAATA+TGG + chr2_3:40095072-40095091 Msa0291500:intron 30.0%
GTGTGTAATTAATTGGTTGT+TGG + chr2_3:40095094-40095113 Msa0291500:intron 30.0%
TACTAAAATATCTTCACAGG+TGG + chr2_3:40095140-40095159 Msa0291500:intron 30.0%
ACTAAAATATCTTCACAGGT+GGG + chr2_3:40095141-40095160 Msa0291500:intron 30.0%
AAATTAAACCGTCTTGAGAT+GGG - chr2_3:40095509-40095528 None:intergenic 30.0%
! AATGTAGGCTACTCTTTTAA+AGG - chr2_3:40095569-40095588 None:intergenic 30.0%
TGTAGAGATTTAAGCGAATT+TGG + chr2_3:40096024-40096043 Msa0291500:intron 30.0%
GTAGAGATTTAAGCGAATTT+GGG + chr2_3:40096025-40096044 Msa0291500:intron 30.0%
! TGAACAAATTTTCACGATTC+TGG + chr2_3:40096112-40096131 Msa0291500:intron 30.0%
CAGCCTTTAGATTAAATACA+TGG - chr2_3:40094356-40094375 None:intergenic 30.0%
! AGAGGACTTTTTAAATGAGA+GGG - chr2_3:40094317-40094336 None:intergenic 30.0%
!!! ATTTTTAGGTTTACTGCTTG+AGG + chr2_3:40096532-40096551 Msa0291500:intron 30.0%
AAGTTGAATTTGCAGTGAAA+TGG - chr2_3:40096688-40096707 None:intergenic 30.0%
AATACACCGATGATTCAAAA+GGG - chr2_3:40096730-40096749 None:intergenic 30.0%
GTGATTGCTTTATGTTTGAT+TGG + chr2_3:40096795-40096814 Msa0291500:intron 30.0%
GGTATTATAGATTATGAGTC+AGG + chr2_3:40096826-40096845 Msa0291500:intron 30.0%
GATAATAGTCTGCTGTTATA+AGG + chr2_3:40096881-40096900 Msa0291500:intron 30.0%
TGAAGTTGTATGTGTTGTAA+GGG + chr2_3:40097180-40097199 Msa0291500:intron 30.0%
TCCGAGATGTGTTTATAATT+AGG + chr2_3:40097460-40097479 Msa0291500:intron 30.0%
GAGATGTGTTTATAATTAGG+AGG + chr2_3:40097463-40097482 Msa0291500:intron 30.0%
!! ACCTTATAAGTCGATTTTGT+CGG + chr2_3:40097494-40097513 Msa0291500:intron 30.0%
! GACAAAATCGATTTATAAGG+TGG - chr2_3:40097534-40097553 None:intergenic 30.0%
!! CCTTATAAATCGATTTTGTC+GGG + chr2_3:40097534-40097553 Msa0291500:intron 30.0%
! GCCTACAAAATTGACTTATA+AGG - chr2_3:40097576-40097595 None:intergenic 30.0%
! CAATTTTGTAGGCTTAAGTT+AGG + chr2_3:40097583-40097602 Msa0291500:intron 30.0%
TATCCCAATCTTAGAAGTTT+GGG - chr2_3:40097614-40097633 None:intergenic 30.0%
ATATCCCAATCTTAGAAGTT+TGG - chr2_3:40097615-40097634 None:intergenic 30.0%
! ACATAAGTCAGATTCTAAGA+TGG - chr2_3:40097739-40097758 None:intergenic 30.0%
! AAGCCTTATAAAGATTACGT+TGG + chr2_3:40097803-40097822 Msa0291500:intron 30.0%
! ATTTGGTATCAGATCCTTTT+TGG + chr2_3:40098151-40098170 Msa0291500:intron 30.0%
!! CTTTTGAAAAATTGTGGATG+AGG + chr2_3:40098341-40098360 Msa0291500:intron 30.0%
! ATTTTTACAAACCATCCTTG+AGG + chr2_3:40098398-40098417 Msa0291500:intron 30.0%
! TTTTTACAAACCATCCTTGA+GGG + chr2_3:40098399-40098418 Msa0291500:intron 30.0%
CAGCAAGTTTAACAAAATCA+CGG + chr2_3:40098494-40098513 Msa0291500:intron 30.0%
TTGGAGATTTAACAAAACCA+CGG - chr2_3:40098525-40098544 None:intergenic 30.0%
TGTTGAGGTTATTTATCTAG+TGG + chr2_3:40098691-40098710 Msa0291500:intron 30.0%
!! TAGTGGTTTGTTGGTATTTA+TGG + chr2_3:40098708-40098727 Msa0291500:intron 30.0%
!! TAGGATTTTCAAGAATTGTC+CGG + chr2_3:40098750-40098769 Msa0291500:intron 30.0%
! GTTTTTCTCTGATCTGTTAT+CGG + chr2_3:40098833-40098852 Msa0291500:CDS 30.0%
TTTGTCAAAGCTTGGAATAA+AGG + chr2_3:40098882-40098901 Msa0291500:CDS 30.0%
CTTGAATCGAATTACTATGA+AGG + chr2_3:40098909-40098928 Msa0291500:CDS 30.0%
AACAAAGGGTTTATAGAGAT+TGG - chr2_3:40099011-40099030 None:intergenic 30.0%
GTTGTTAGTAACTGTTACAT+AGG - chr2_3:40099041-40099060 None:intergenic 30.0%
GTATCAATCTTTAAGTGTGT+TGG + chr2_3:40099122-40099141 Msa0291500:three_prime_UTR 30.0%
! CCAATTACACCTTTTCTTTT+TGG - chr2_3:40099160-40099179 None:intergenic 30.0%
! CCAAAAAGAAAAGGTGTAAT+TGG + chr2_3:40099157-40099176 Msa0291500:intron 30.0%
AAAAAAAAAAAGGGGGATTC+AGG + chr2_3:40099243-40099262 Msa0291500:three_prime_UTR 30.0%
TGATTCACATAAAGACACAA+GGG - chr2_3:40099306-40099325 None:intergenic 30.0%
CAGAATTTGATTACGGTAGT+AGG - chr2_3:40092687-40092706 None:intergenic 35.0%
CTACTACCGTAATCAAATTC+TGG + chr2_3:40092685-40092704 Msa0291500:five_prime_UTR 35.0%
GTGTTCCCAGAATTTGATTA+CGG - chr2_3:40092694-40092713 None:intergenic 35.0%
CTGCTTGAGTTTGAATTTGA+AGG - chr2_3:40092728-40092747 None:intergenic 35.0%
!!! CAACAATTTTGAAACGCAAG+GGG - chr2_3:40093143-40093162 None:intergenic 35.0%
!!! CTCAACAATTTTGAAACGCA+AGG - chr2_3:40093145-40093164 None:intergenic 35.0%
CGCACCTATTTGTAAAGATA+AGG + chr2_3:40093199-40093218 Msa0291500:intron 35.0%
GACCCCTTATCTTTACAAAT+AGG - chr2_3:40093206-40093225 None:intergenic 35.0%
GCATATTTCCCTTATGTTAG+GGG + chr2_3:40093231-40093250 Msa0291500:intron 35.0%
CATATTTCCCTTATGTTAGG+GGG + chr2_3:40093232-40093251 Msa0291500:intron 35.0%
! CTTTTAACCCCCTAACATAA+GGG - chr2_3:40093242-40093261 None:intergenic 35.0%
! TCTTTTAACCCCCTAACATA+AGG - chr2_3:40093243-40093262 None:intergenic 35.0%
GTATATTTCCCTAAACATGG+AGG + chr2_3:40093263-40093282 Msa0291500:intron 35.0%
! CTTTCACAATGTTGCGATTT+TGG - chr2_3:40093318-40093337 None:intergenic 35.0%
ATCGCAACATTGTGAAAGTT+AGG + chr2_3:40093320-40093339 Msa0291500:intron 35.0%
TCGCAACATTGTGAAAGTTA+GGG + chr2_3:40093321-40093340 Msa0291500:intron 35.0%
AGAGGGAAAAGAAAGAGAAA+AGG + chr2_3:40093459-40093478 Msa0291500:CDS 35.0%
GGAAAAGAAAGAGAAAAGGA+AGG + chr2_3:40093463-40093482 Msa0291500:CDS 35.0%
!! GTTTTCAAACTGGTTTAGGT+TGG + chr2_3:40093981-40094000 Msa0291500:intron 35.0%
!! TTTCAAACTGGTTTAGGTTG+GGG + chr2_3:40093983-40094002 Msa0291500:intron 35.0%
! CAAAAGAACATTGGTACTGA+AGG + chr2_3:40094062-40094081 Msa0291500:intron 35.0%
! CACTATCTAGTTTGATATGG+AGG + chr2_3:40094091-40094110 Msa0291500:intron 35.0%
! TGGGAGTTTGAACTTTTGTA+AGG + chr2_3:40094118-40094137 Msa0291500:intron 35.0%
!!! AAGGCTATGCTAGTTTTTCT+AGG + chr2_3:40094137-40094156 Msa0291500:intron 35.0%
! GAGAGGACTTTTTAAATGAG+AGG + chr2_3:40094316-40094335 Msa0291500:intron 35.0%
TTCATGTCAGTACCTTAAAG+TGG + chr2_3:40095049-40095068 Msa0291500:intron 35.0%
AATTGGTTGTTGGAAGAGTA+TGG + chr2_3:40095104-40095123 Msa0291500:intron 35.0%
! GTACTGACGGTGTAATTATA+TGG - chr2_3:40095418-40095437 None:intergenic 35.0%
TATAATTACACCGTCAGTAC+TGG + chr2_3:40095418-40095437 Msa0291500:intron 35.0%
GCTAGTTCAATTGCAAAAAC+TGG - chr2_3:40095465-40095484 None:intergenic 35.0%
CAAATTAAACCGTCTTGAGA+TGG - chr2_3:40095510-40095529 None:intergenic 35.0%
CATCTCAAGACGGTTTAATT+TGG + chr2_3:40095508-40095527 Msa0291500:intron 35.0%
ACATTGAGATGGGACTTTAA+AGG - chr2_3:40095672-40095691 None:intergenic 35.0%
AATTCCTTGAACCCATTAGT+TGG + chr2_3:40095888-40095907 Msa0291500:intron 35.0%
ATTCCTTGAACCCATTAGTT+GGG + chr2_3:40095889-40095908 Msa0291500:intron 35.0%
TTGAACAATCCCCAACTAAT+GGG - chr2_3:40095902-40095921 None:intergenic 35.0%
TTTGAACAATCCCCAACTAA+TGG - chr2_3:40095903-40095922 None:intergenic 35.0%
GTTGGGGATTGTTCAAAAAT+CGG + chr2_3:40095906-40095925 Msa0291500:intron 35.0%
GATTGTTCAAAAATCGGCAT+CGG + chr2_3:40095912-40095931 Msa0291500:intron 35.0%
TAAGAAGAAGGTTACTGCAA+CGG + chr2_3:40096089-40096108 Msa0291500:intron 35.0%
! TTTTTAAATGAGAGGGTGAG+AGG - chr2_3:40096328-40096347 None:intergenic 35.0%
! GAGAGGACTTTTTAAATGAG+AGG - chr2_3:40094316-40094335 None:intergenic 35.0%
TTTATAGGTATTTGCAAGCC+TGG - chr2_3:40096510-40096529 None:intergenic 35.0%
GAGCAAGGAAAAAACATGAA+AGG + chr2_3:40096559-40096578 Msa0291500:intron 35.0%
! TGGGACAAAGTATCTGTATA+AGG + chr2_3:40096639-40096658 Msa0291500:intron 35.0%
ATGATTCAAAAGGGAAAGAC+AGG - chr2_3:40096721-40096740 None:intergenic 35.0%
! GTCTTTCCCTTTTGAATCAT+CGG + chr2_3:40096721-40096740 Msa0291500:intron 35.0%
CAATACACCGATGATTCAAA+AGG - chr2_3:40096731-40096750 None:intergenic 35.0%
AAACCAATCATTTCACTCCA+TGG + chr2_3:40096764-40096783 Msa0291500:intron 35.0%
! AGCAATCACTAATTTTGCCA+TGG - chr2_3:40096784-40096803 None:intergenic 35.0%
GTGAAGTTGTATGTGTTGTA+AGG + chr2_3:40097179-40097198 Msa0291500:intron 35.0%
AGCCTCTTGTGTAAAAAACT+GGG + chr2_3:40097225-40097244 Msa0291500:intron 35.0%
!!! TACCCAGTTTTTTACACAAG+AGG - chr2_3:40097230-40097249 None:intergenic 35.0%
CTTGTGTAAAAAACTGGGTA+AGG + chr2_3:40097230-40097249 Msa0291500:intron 35.0%
CTTACAGTATACCAAATGGT+GGG + chr2_3:40097256-40097275 Msa0291500:intron 35.0%
TGATAAAAAAAAAGGGCAGC+CGG - chr2_3:40097321-40097340 None:intergenic 35.0%
TCTGTTATGCTACTCATGAT+CGG + chr2_3:40097355-40097374 Msa0291500:intron 35.0%
!! CCTTATAAGTCGATTTTGTC+GGG + chr2_3:40097495-40097514 Msa0291500:intron 35.0%
! CCCGACAAAATCGATTTATA+AGG - chr2_3:40097537-40097556 None:intergenic 35.0%
!! TCAACCCAAACTTCTAAGAT+TGG + chr2_3:40097607-40097626 Msa0291500:intron 35.0%
!! CAACCCAAACTTCTAAGATT+GGG + chr2_3:40097608-40097627 Msa0291500:intron 35.0%
! TCTAGGACGTACTATGATAA+AGG + chr2_3:40097661-40097680 Msa0291500:intron 35.0%
! TCTAAGATGGTACCAATGTT+TGG - chr2_3:40097726-40097745 None:intergenic 35.0%
! CTCATTGAGCTAACTTTTGA+GGG - chr2_3:40097770-40097789 None:intergenic 35.0%
! ACTCATTGAGCTAACTTTTG+AGG - chr2_3:40097771-40097790 None:intergenic 35.0%
AAAGTTAGCTCAATGAGTGA+AGG + chr2_3:40097773-40097792 Msa0291500:intron 35.0%
TGGCCAACGTAATCTTTATA+AGG - chr2_3:40097809-40097828 None:intergenic 35.0%
CAGCAAAAGTGAAAGAAACA+TGG + chr2_3:40098043-40098062 Msa0291500:CDS 35.0%
! TTAGTAGTAGTATTGGGAGT+GGG - chr2_3:40098080-40098099 None:intergenic 35.0%
! ATTAGTAGTAGTATTGGGAG+TGG - chr2_3:40098081-40098100 None:intergenic 35.0%
TTCTTGCCATGCTGAATATT+TGG + chr2_3:40098134-40098153 Msa0291500:intron 35.0%
CTGATACCAAATATTCAGCA+TGG - chr2_3:40098143-40098162 None:intergenic 35.0%
! AACTGACAGTTCAAGAGTAT+AGG + chr2_3:40098297-40098316 Msa0291500:intron 35.0%
! TTTTACAAACCATCCTTGAG+GGG + chr2_3:40098400-40098419 Msa0291500:intron 35.0%
! TTTTCGCAAAAGCTATGCTT+TGG - chr2_3:40098544-40098563 None:intergenic 35.0%
GGTAGCAAACTCATTATTCT+TGG - chr2_3:40098790-40098809 None:intergenic 35.0%
!! AGAATAATGAGTTTGCTACC+TGG + chr2_3:40098790-40098809 Msa0291500:CDS 35.0%
TTGCAGAATTTGTCAAAGCT+TGG + chr2_3:40098874-40098893 Msa0291500:CDS 35.0%
AAGGTGTAAAAAGCAGAGAA+TGG + chr2_3:40099202-40099221 Msa0291500:intron 35.0%
TGTAAAAAGCAGAGAATGGA+TGG + chr2_3:40099206-40099225 Msa0291500:three_prime_UTR 35.0%
CATAAAGACACAAGGGAAAT+TGG - chr2_3:40099299-40099318 None:intergenic 35.0%
CTGATTCACATAAAGACACA+AGG - chr2_3:40099307-40099326 None:intergenic 35.0%
! ACTCAAGCAGAGTACTTGTT+TGG + chr2_3:40092738-40092757 Msa0291500:five_prime_UTR 40.0%
!!! GCGATTATGGCTCCTTTTTT+GGG - chr2_3:40093182-40093201 None:intergenic 40.0%
!!! TGCGATTATGGCTCCTTTTT+TGG - chr2_3:40093183-40093202 None:intergenic 40.0%
AAAGTGACCCTCCATGTTTA+GGG - chr2_3:40093274-40093293 None:intergenic 40.0%
AAAAGTGACCCTCCATGTTT+AGG - chr2_3:40093275-40093294 None:intergenic 40.0%
CGCAACATTGTGAAAGTTAG+GGG + chr2_3:40093322-40093341 Msa0291500:intron 40.0%
GCAACATTGTGAAAGTTAGG+GGG + chr2_3:40093323-40093342 Msa0291500:intron 40.0%
CAGATGAGAAGAAAAGCAAG+AGG + chr2_3:40093396-40093415 Msa0291500:intron 40.0%
! GAGAACTGTAGATGATGATG+AGG + chr2_3:40093421-40093440 Msa0291500:CDS 40.0%
AGGAAAAGAAGAGCAGAAAG+AGG + chr2_3:40093441-40093460 Msa0291500:CDS 40.0%
GGAAAAGAAGAGCAGAAAGA+GGG + chr2_3:40093442-40093461 Msa0291500:CDS 40.0%
TACAATCATGTATCAGCTGC+AGG + chr2_3:40093784-40093803 Msa0291500:intron 40.0%
AGGAATGAGTTAGAAGTCGT+TGG + chr2_3:40093804-40093823 Msa0291500:intron 40.0%
TAGTTTGATATGGAGGGTCT+TGG + chr2_3:40094098-40094117 Msa0291500:intron 40.0%
AGTTTGATATGGAGGGTCTT+GGG + chr2_3:40094099-40094118 Msa0291500:intron 40.0%
TCTAGGAATCAAGAGGATAC+TGG + chr2_3:40094154-40094173 Msa0291500:intron 40.0%
TTGTTAACGTGGAAGAGAGA+AGG - chr2_3:40096224-40096243 None:intergenic 40.0%
ATTGTTGCAACGAGAAGAGA+GGG - chr2_3:40094518-40094537 None:intergenic 40.0%
AAAGTGTATGCAGGCACTAT+TGG - chr2_3:40094979-40094998 None:intergenic 40.0%
AATAGTGCCTGCATACACTT+TGG + chr2_3:40094978-40094997 Msa0291500:intron 40.0%
TCAGTACCTTAAAGTGGACA+GGG + chr2_3:40095055-40095074 Msa0291500:intron 40.0%
AATATCTTCACAGGTGGGAA+TGG + chr2_3:40095146-40095165 Msa0291500:intron 40.0%
TTCCTTGAACCCATTAGTTG+GGG + chr2_3:40095890-40095909 Msa0291500:intron 40.0%
! ATCTTTACCGGTTACGTTCA+TGG + chr2_3:40095948-40095967 Msa0291500:intron 40.0%
GTTGTTGCAACTAGAAGAGA+GGG + chr2_3:40096134-40096153 Msa0291500:intron 40.0%
TTGTTAACGTGGAAGAGAGA+AGG + chr2_3:40096224-40096243 Msa0291500:intron 40.0%
AATTTGCAGTGAAATGGCAC+AGG - chr2_3:40096682-40096701 None:intergenic 40.0%
CAAAAGGGAAAGACAGGAAT+AGG - chr2_3:40096715-40096734 None:intergenic 40.0%
TTGCCATGGAGTGAAATGAT+TGG - chr2_3:40096770-40096789 None:intergenic 40.0%
TAACCCTAAAAGCAAGCTCA+AGG + chr2_3:40096855-40096874 Msa0291500:intron 40.0%
!! ACTCCTTGAGCTTGCTTTTA+GGG - chr2_3:40096861-40096880 None:intergenic 40.0%
CTGCTGTTATAAGGTCTACT+TGG + chr2_3:40096890-40096909 Msa0291500:intron 40.0%
CTTTACATGTCCTATCCTAG+AGG - chr2_3:40096946-40096965 None:intergenic 40.0%
TTGCAAGACTACACACACAT+AGG + chr2_3:40096974-40096993 Msa0291500:intron 40.0%
!! CGGTTTTGTAGGATTGAGTT+AGG + chr2_3:40097092-40097111 Msa0291500:intron 40.0%
TTGTATGTGTTGTAAGGGCA+TGG + chr2_3:40097185-40097204 Msa0291500:intron 40.0%
! TGTATGTGTTGTAAGGGCAT+GGG + chr2_3:40097186-40097205 Msa0291500:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+TGG + chr2_3:40097224-40097243 Msa0291500:intron 40.0%
GCTGCTTACAGTATACCAAA+TGG + chr2_3:40097252-40097271 Msa0291500:intron 40.0%
GCTTACAGTATACCAAATGG+TGG + chr2_3:40097255-40097274 Msa0291500:intron 40.0%
CTGTTATGCTACTCATGATC+GGG + chr2_3:40097356-40097375 Msa0291500:intron 40.0%
ATTCTCCAAATGTCCAGTCT+TGG + chr2_3:40097385-40097404 Msa0291500:intron 40.0%
GTTCCCCATTCAATGAGATA+TGG + chr2_3:40097437-40097456 Msa0291500:intron 40.0%
GGACCATATCTCATTGAATG+GGG - chr2_3:40097443-40097462 None:intergenic 40.0%
CGGACCATATCTCATTGAAT+GGG - chr2_3:40097444-40097463 None:intergenic 40.0%
TCGGACCATATCTCATTGAA+TGG - chr2_3:40097445-40097464 None:intergenic 40.0%
! CCCGACAAAATCGACTTATA+AGG - chr2_3:40097498-40097517 None:intergenic 40.0%
! CGATTTTGTCGGGTTAAGTT+AGG + chr2_3:40097505-40097524 Msa0291500:intron 40.0%
! CGATTTTGTCGGGTTAAGTT+AGG + chr2_3:40097505-40097524 Msa0291500:intron 40.0%
AGCTACACTGAAGGTAATCT+AGG + chr2_3:40097644-40097663 Msa0291500:intron 40.0%
AGGACGTACTATGATAAAGG+AGG + chr2_3:40097664-40097683 Msa0291500:intron 40.0%
TCTTACATTGACCAGTGATG+TGG - chr2_3:40097829-40097848 None:intergenic 40.0%
AAAGGCAACACTGGTAAAAC+AGG - chr2_3:40098241-40098260 None:intergenic 40.0%
TCTATGAGATGCTAGCTCAA+TGG - chr2_3:40098439-40098458 None:intergenic 40.0%
TTGAAGACTCCGTGTATGTT+TGG + chr2_3:40098466-40098485 Msa0291500:intron 40.0%
GCTGTGATTCCAAACATACA+CGG - chr2_3:40098478-40098497 None:intergenic 40.0%
CGGTGAGTTTGATAGAATCA+AGG - chr2_3:40098577-40098596 None:intergenic 40.0%
GTCAGAAACTGTGATTGTTG+AGG + chr2_3:40098676-40098695 Msa0291500:intron 40.0%
CTTGGCAAAATAGTCATCAC+CGG - chr2_3:40098772-40098791 None:intergenic 40.0%
ATTCTTCTCTTCTTTCAGCC+AGG - chr2_3:40098811-40098830 None:intergenic 40.0%
!! TTAAGTGTGTTGGTTGTTCG+CGG + chr2_3:40099132-40099151 Msa0291500:three_prime_UTR 40.0%
AAGGTGTAATTGGTTGTTCG+CGG + chr2_3:40099167-40099186 Msa0291500:intron 40.0%
! TCAGGTTATGATTTGCAGAG+TGG + chr2_3:40099261-40099280 Msa0291500:three_prime_UTR 40.0%
GACAAATGTGGCACACATAT+TGG - chr2_3:40099372-40099391 None:intergenic 40.0%
! ACTACTGACACAAGCCCTTT+TGG - chr2_3:40093705-40093724 None:intergenic 45.0%
! GAATCAAGAGGATACTGGCT+AGG + chr2_3:40094159-40094178 Msa0291500:intron 45.0%
! TAGACTAACTGCAGGGGTTT+TGG + chr2_3:40094182-40094201 Msa0291500:intron 45.0%
! AGACTAACTGCAGGGGTTTT+GGG + chr2_3:40094183-40094202 Msa0291500:intron 45.0%
!! TAGGGGGTGTTTCAAATGAG+AGG + chr2_3:40094299-40094318 Msa0291500:intron 45.0%
GGAAGAGAGAAGGAAAGAGA+TGG - chr2_3:40096234-40096253 None:intergenic 45.0%
GAGAGTCGTAGTTGTTAACG+TGG - chr2_3:40096213-40096232 None:intergenic 45.0%
ACTCTTCCATCTCCTCTTCT+GGG + chr2_3:40094459-40094478 Msa0291500:intron 45.0%
GATTGTTGCAACGAGAAGAG+AGG - chr2_3:40094519-40094538 None:intergenic 45.0%
GAAGAAGAAGGTTACTGCAG+CGG - chr2_3:40094563-40094582 None:intergenic 45.0%
AGATGTTTCGATCCTGGTGT+GGG - chr2_3:40094732-40094751 None:intergenic 45.0%
GATCTCAGATGTTTCGATCC+TGG - chr2_3:40094738-40094757 None:intergenic 45.0%
ACCTGACACAATCGGTGTAT+CGG - chr2_3:40094787-40094806 None:intergenic 45.0%
GTCATTCGATCTGCAACACT+TGG - chr2_3:40094835-40094854 None:intergenic 45.0%
GTCAGTACCTTAAAGTGGAC+AGG + chr2_3:40095054-40095073 Msa0291500:intron 45.0%
CAGTTTCCCTGTCCACTTTA+AGG - chr2_3:40095064-40095083 None:intergenic 45.0%
! GACTTTGGGAATGTTCACGT+TGG - chr2_3:40095487-40095506 None:intergenic 45.0%
GTAGCCTACATTCATGCAGT+CGG + chr2_3:40095577-40095596 Msa0291500:intron 45.0%
!! ATCCCCAACTAATGGGTTCA+AGG - chr2_3:40095895-40095914 None:intergenic 45.0%
! TTTACCGGTTACGTTCATGG+CGG + chr2_3:40095951-40095970 Msa0291500:intron 45.0%
TTCATGGCGGTGAGAATAGA+AGG + chr2_3:40095964-40095983 Msa0291500:intron 45.0%
GGTTGTTGCAACTAGAAGAG+AGG + chr2_3:40096133-40096152 Msa0291500:intron 45.0%
ACTCTTCCATCTCCTCTTCT+GGG - chr2_3:40094459-40094478 None:intergenic 45.0%
GAGAGTCGTAGTTGTTAACG+TGG + chr2_3:40096213-40096232 Msa0291500:intron 45.0%
GGAAGAGAGAAGGAAAGAGA+TGG + chr2_3:40096234-40096253 Msa0291500:intron 45.0%
!! TAGGGGGTGTTTCAAATGAG+AGG - chr2_3:40094299-40094318 None:intergenic 45.0%
!!! ACTGCTTGAGGTTTTGAGCA+AGG + chr2_3:40096544-40096563 Msa0291500:intron 45.0%
!! CACTCCTTGAGCTTGCTTTT+AGG - chr2_3:40096862-40096881 None:intergenic 45.0%
! CAACATGCCATTTCACCTCT+AGG + chr2_3:40096928-40096947 Msa0291500:intron 45.0%
!! TGCCATTTCACCTCTAGGAT+AGG + chr2_3:40096933-40096952 Msa0291500:intron 45.0%
GTCCTATCCTAGAGGTGAAA+TGG - chr2_3:40096938-40096957 None:intergenic 45.0%
AGGTGTGGAGAGTCTCATAT+TGG + chr2_3:40097012-40097031 Msa0291500:intron 45.0%
! TCTAAGATAAGGGAGAGCCT+TGG + chr2_3:40097149-40097168 Msa0291500:intron 45.0%
GCTTCTAGTAGCTACACTGA+AGG + chr2_3:40097635-40097654 Msa0291500:intron 45.0%
AGGAGGTTACGATTCCGATA+TGG + chr2_3:40097681-40097700 Msa0291500:intron 45.0%
! GGTACCAATGTTTGGAGTCT+GGG - chr2_3:40097718-40097737 None:intergenic 45.0%
! TGGTACCAATGTTTGGAGTC+TGG - chr2_3:40097719-40097738 None:intergenic 45.0%
GCAACACTGGTAAAACAGGA+TGG - chr2_3:40098237-40098256 None:intergenic 45.0%
ATTCAGCAGAAAGGCAACAC+TGG - chr2_3:40098250-40098269 None:intergenic 45.0%
TGAGATGCTAGCTCAATGGA+CGG - chr2_3:40098435-40098454 None:intergenic 45.0%
! GGTTATGATTTGCAGAGTGG+CGG + chr2_3:40099264-40099283 Msa0291500:three_prime_UTR 45.0%
AGTGTGCCTGTTGTGTGAAT+CGG + chr2_3:40099325-40099344 Msa0291500:three_prime_UTR 45.0%
!!! ATTTTAATTTTTTTTAATAG+GGG - chr2_3:40093116-40093135 None:intergenic 5.0%
!!! ACTTTTTAATTTTTTTTAAT+AGG + chr2_3:40093289-40093308 Msa0291500:intron 5.0%
!!! CTTTTTAATTTTTTTTAATA+GGG + chr2_3:40093290-40093309 Msa0291500:intron 5.0%
!!! TTTTTAATTTTTTTTAATAG+GGG + chr2_3:40093291-40093310 Msa0291500:intron 5.0%
!! ATATATATATATATATATAG+GGG - chr2_3:40096370-40096389 None:intergenic 5.0%
!! AAACAAAAAAAAAAAAAAAA+GGG + chr2_3:40099234-40099253 Msa0291500:three_prime_UTR 5.0%
CCTTCAGATTCGGATTGCGA+AGG - chr2_3:40092823-40092842 None:intergenic 50.0%
CCTTCGCAATCCGAATCTGA+AGG + chr2_3:40092820-40092839 Msa0291500:CDS 50.0%
TGGCTAGGTAGACTAACTGC+AGG + chr2_3:40094174-40094193 Msa0291500:intron 50.0%
GGCTAGGTAGACTAACTGCA+GGG + chr2_3:40094175-40094194 Msa0291500:intron 50.0%
GCTAGGTAGACTAACTGCAG+GGG + chr2_3:40094176-40094195 Msa0291500:intron 50.0%
CACTCTTCCATCTCCTCTTC+TGG + chr2_3:40094458-40094477 Msa0291500:intron 50.0%
GTTTCACCCAGAAGAGGAGA+TGG - chr2_3:40096184-40096203 None:intergenic 50.0%
GTGAGGTAGGAAACTGAGAG+GGG - chr2_3:40096156-40096175 None:intergenic 50.0%
GGTGAGGTAGGAAACTGAGA+GGG - chr2_3:40096155-40096174 None:intergenic 50.0%
GCAGAGTTGAAGAGATGACC+AGG - chr2_3:40096049-40096068 None:intergenic 50.0%
TGACGATAATGACCCACACC+AGG + chr2_3:40094717-40094736 Msa0291500:intron 50.0%
CAGATGTTTCGATCCTGGTG+TGG - chr2_3:40094733-40094752 None:intergenic 50.0%
ACCGATTGTGTCAGGTGAGA+GGG + chr2_3:40094791-40094810 Msa0291500:intron 50.0%
TCCCTCTCACCTGACACAAT+CGG - chr2_3:40094795-40094814 None:intergenic 50.0%
TTGTGTCAGGTGAGAGGGAT+TGG + chr2_3:40094796-40094815 Msa0291500:intron 50.0%
CGATCTGCAACACTTGGATG+AGG - chr2_3:40094829-40094848 None:intergenic 50.0%
! TCAGAGCGTACCAGTACTGA+CGG - chr2_3:40095431-40095450 None:intergenic 50.0%
CCGTCTTGAGATGGGACTTT+GGG - chr2_3:40095501-40095520 None:intergenic 50.0%
CCCAAAGTCCCATCTCAAGA+CGG + chr2_3:40095498-40095517 Msa0291500:intron 50.0%
ACCGTCTTGAGATGGGACTT+TGG - chr2_3:40095502-40095521 None:intergenic 50.0%
CAGTCCGACTGCATGAATGT+AGG - chr2_3:40095584-40095603 None:intergenic 50.0%
GCGGTGAGAATAGAAGGAGA+TGG + chr2_3:40095970-40095989 Msa0291500:intron 50.0%
GAGAATAGAAGGAGATGGCG+AGG + chr2_3:40095975-40095994 Msa0291500:intron 50.0%
TGCAACTAGAAGAGAGGGTG+AGG + chr2_3:40096139-40096158 Msa0291500:intron 50.0%
ACTAGAAGAGAGGGTGAGGT+AGG + chr2_3:40096143-40096162 Msa0291500:intron 50.0%
GGTGAGGTAGGAAACTGAGA+GGG + chr2_3:40096155-40096174 Msa0291500:intron 50.0%
GTGAGGTAGGAAACTGAGAG+GGG + chr2_3:40096156-40096175 Msa0291500:intron 50.0%
GTGATCGTTTCACCCAGAAG+AGG + chr2_3:40096178-40096197 Msa0291500:intron 50.0%
GTTTCACCCAGAAGAGGAGA+TGG + chr2_3:40096184-40096203 Msa0291500:intron 50.0%
CACTCTTCCATCTCCTCTTC+TGG - chr2_3:40094458-40094477 None:intergenic 50.0%
CACAGGACAAGGATGGCTTA+TGG - chr2_3:40096665-40096684 None:intergenic 50.0%
GAAATGGCACAGGACAAGGA+TGG - chr2_3:40096672-40096691 None:intergenic 50.0%
CAGTGAAATGGCACAGGACA+AGG - chr2_3:40096676-40096695 None:intergenic 50.0%
ATAGGTTGCCCGACAGATCT+AGG + chr2_3:40096992-40097011 Msa0291500:intron 50.0%
TCTCCACACCTAGATCTGTC+GGG - chr2_3:40097003-40097022 None:intergenic 50.0%
CTCTCCACACCTAGATCTGT+CGG - chr2_3:40097004-40097023 None:intergenic 50.0%
ACAAAGCTCCCACATACGCA+GGG - chr2_3:40097295-40097314 None:intergenic 50.0%
! TATGTGGGAGCTTTGTGCAC+CGG + chr2_3:40097299-40097318 Msa0291500:intron 50.0%
CACGTCCAAGACTGGACATT+TGG - chr2_3:40097393-40097412 None:intergenic 50.0%
AATGTCCAGTCTTGGACGTG+AGG + chr2_3:40097393-40097412 Msa0291500:intron 50.0%
GGGAGACTCTGCTTCCATAT+CGG - chr2_3:40097698-40097717 None:intergenic 50.0%
GTCTCCCAGACTCCAAACAT+TGG + chr2_3:40097711-40097730 Msa0291500:intron 50.0%
GATTACGTTGGCCACATCAC+TGG + chr2_3:40097815-40097834 Msa0291500:intron 50.0%
GAACTGTCAGTTGCAGCATG+TGG - chr2_3:40098289-40098308 None:intergenic 50.0%
AGTTCGAATCCCCTCAAGGA+TGG - chr2_3:40098412-40098431 None:intergenic 50.0%
!! ACAAAATCACGGTGTCACCG+TGG + chr2_3:40098505-40098524 Msa0291500:intron 50.0%
! TTCCATTTATGGGCTGTGCG+AGG - chr2_3:40098948-40098967 None:intergenic 50.0%
TTCGCGGCGCCAAAAAGAAA+AGG + chr2_3:40099148-40099167 Msa0291500:three_prime_UTR 50.0%
TTCGCGGCGCCAAAAAGAAA+AGG + chr2_3:40099148-40099167 Msa0291500:three_prime_UTR 50.0%
GCCTGTTGTGTGAATCGGTA+AGG + chr2_3:40099330-40099349 Msa0291500:three_prime_UTR 50.0%
!! GCCTTACCGATTCACACAAC+AGG - chr2_3:40099334-40099353 None:intergenic 50.0%
GACGCCACGTGTCCCAAAAA+AGG + chr2_3:40093167-40093186 Msa0291500:intron 55.0%
!!! GGCTCCTTTTTTGGGACACG+TGG - chr2_3:40093174-40093193 None:intergenic 55.0%
GTGCTCGTTTCACCCAGAAG+AGG - chr2_3:40094474-40094493 None:intergenic 55.0%
GGGTGAGGTAGGAAACTGAG+AGG - chr2_3:40096154-40096173 None:intergenic 55.0%
ACGAGAAGAGAGGGTGAGGT+AGG - chr2_3:40094509-40094528 None:intergenic 55.0%
TGCAACGAGAAGAGAGGGTG+AGG - chr2_3:40094513-40094532 None:intergenic 55.0%
! GCCGATACACCGATTGTGTC+AGG + chr2_3:40094783-40094802 Msa0291500:intron 55.0%
! CACCGATTGTGTCAGGTGAG+AGG + chr2_3:40094790-40094809 Msa0291500:intron 55.0%
CTCACCGCCATGAACGTAAC+CGG - chr2_3:40095958-40095977 None:intergenic 55.0%
GGGTGAGGTAGGAAACTGAG+AGG + chr2_3:40096154-40096173 Msa0291500:intron 55.0%
TTGCCCGACAGATCTAGGTG+TGG + chr2_3:40096997-40097016 Msa0291500:intron 55.0%
ACAACTTCACCGTTGCGCCA+AGG - chr2_3:40097169-40097188 None:intergenic 55.0%
ACATACGCAGGGTCTGGCAA+GGG - chr2_3:40097284-40097303 None:intergenic 55.0%
TTGCCAGACCCTGCGTATGT+GGG + chr2_3:40097284-40097303 Msa0291500:intron 55.0%
CACAAAGCTCCCACATACGC+AGG - chr2_3:40097296-40097315 None:intergenic 55.0%
TCCAGTCTTGGACGTGAGGA+TGG + chr2_3:40097397-40097416 Msa0291500:intron 55.0%
ACCATCCTCACGTCCAAGAC+TGG - chr2_3:40097401-40097420 None:intergenic 55.0%
ACGGAGTTCGAATCCCCTCA+AGG - chr2_3:40098416-40098435 None:intergenic 55.0%
AAGGGAGAGCCTTGGCGCAA+CGG + chr2_3:40097157-40097176 Msa0291500:intron 60.0%
TGGCAAGGGGTCCCACCATT+TGG - chr2_3:40097270-40097289 None:intergenic 60.0%
CATACGCAGGGTCTGGCAAG+GGG - chr2_3:40097283-40097302 None:intergenic 60.0%
CACATACGCAGGGTCTGGCA+AGG - chr2_3:40097285-40097304 None:intergenic 60.0%
CTTGCCAGACCCTGCGTATG+TGG + chr2_3:40097283-40097302 Msa0291500:intron 60.0%
CGCCTCGCACAGCCCATAAA+TGG + chr2_3:40098943-40098962 Msa0291500:CDS 60.0%
GCTCCCACATACGCAGGGTC+TGG - chr2_3:40097290-40097309 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 40092618 40099462 40092618 ID=Msa0291500;Name=Msa0291500
chr2_3 mRNA 40092618 40099462 40092618 ID=Msa0291500-mRNA-1;Parent=Msa0291500;Name=Msa0291500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=169|1|1|1|0.5|0.4|5|447|152
chr2_3 exon 40092618 40092841 40092618 ID=Msa0291500-mRNA-1:exon:12860;Parent=Msa0291500-mRNA-1
chr2_3 exon 40093399 40093518 40093399 ID=Msa0291500-mRNA-1:exon:12861;Parent=Msa0291500-mRNA-1
chr2_3 exon 40098009 40098064 40098009 ID=Msa0291500-mRNA-1:exon:12862;Parent=Msa0291500-mRNA-1
chr2_3 exon 40098753 40099169 40098753 ID=Msa0291500-mRNA-1:exon:12863;Parent=Msa0291500-mRNA-1
chr2_3 exon 40099205 40099462 40099205 ID=Msa0291500-mRNA-1:exon:12864;Parent=Msa0291500-mRNA-1
chr2_3 five_prime_UTR 40092618 40092786 40092618 ID=Msa0291500-mRNA-1:five_prime_utr;Parent=Msa0291500-mRNA-1
chr2_3 CDS 40092787 40092841 40092787 ID=Msa0291500-mRNA-1:cds;Parent=Msa0291500-mRNA-1
chr2_3 CDS 40093399 40093518 40093399 ID=Msa0291500-mRNA-1:cds;Parent=Msa0291500-mRNA-1
chr2_3 CDS 40098009 40098064 40098009 ID=Msa0291500-mRNA-1:cds;Parent=Msa0291500-mRNA-1
chr2_3 CDS 40098753 40098980 40098753 ID=Msa0291500-mRNA-1:cds;Parent=Msa0291500-mRNA-1
chr2_3 three_prime_UTR 40098981 40099169 40098981 ID=Msa0291500-mRNA-1:three_prime_utr;Parent=Msa0291500-mRNA-1
chr2_3 three_prime_UTR 40099205 40099462 40099205 ID=Msa0291500-mRNA-1:three_prime_utr;Parent=Msa0291500-mRNA-1
Gene Sequence

>Msa0291500

ATGGGAAGCGATCGAAAATCAAAAAGAAGTTATCCTTCGCAATCCGAATCTGAAGATGAGAAGAAAAGCAAGAGGAAGAGAACTGTAGATGATGATGAGGAAAAGAAGAGCAGAAAGAGGGAAAAGAAAGAGAAAAGGAAGGATAAGAAGCATTCCAAAGATAAATATGATAAGGATAAGAAGTTAAAAGACAAGCACAAAAGTAAACGCAGCAAAAGTGAAAGAAACATGGATTTTCAAGAATTGTCCGGTGATGACTATTTTGCCAAGAATAATGAGTTTGCTACCTGGCTGAAAGAAGAGAAGAATGTGTTTTTCTCTGATCTGTTATCGGAGTCAGCACGTGAGTTGTTTGCAGAATTTGTCAAAGCTTGGAATAAAGGAAAGCTTGAATCGAATTACTATGAAGGCATTAAAACTGCGCCTCGCACAGCCCATAAATGGAAAATCAAAAAGTAG

Protein sequence

>Msa0291500

MGSDRKSKRSYPSQSESEDEKKSKRKRTVDDDEEKKSRKREKKEKRKDKKHSKDKYDKDKKLKDKHKSKRSKSERNMDFQELSGDDYFAKNNEFATWLKEEKNVFFSDLLSESARELFAEFVKAWNKGKLESNYYEGIKTAPRTAHKWKIKK*