AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388160 MtrunA17_Chr5g0447491 100.000 130 0 0 1 130 1 130 1.18e-92 263
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388160 AT5G49410.1 69.307 101 31 0 3 103 18 118 2.55e-51 159
Msa0388160 AT5G49410.2 69.307 101 31 0 3 103 18 118 2.55e-51 159
Msa0388160 AT1G73940.1 37.069 116 64 2 11 126 43 149 3.73e-23 88.6

Find 48 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTGTAGCTTCTCTAAA+TGG 0.231985 3_1:-92490586 None:intergenic
TCCTTCTGAGTCTTGGCTTA+TGG 0.232824 3_1:-92490274 None:intergenic
AATTAGAGTAGTGAGAAATT+AGG 0.247656 3_1:+92488793 Msa0388160:five_prime_UTR
ATTAGAGTAGTGAGAAATTA+GGG 0.258869 3_1:+92488794 Msa0388160:five_prime_UTR
TGTTATTCATTAGTGTAAAC+TGG 0.347893 3_1:+92490439 Msa0388160:three_prime_UTR
GTTATTGTTTGTCTCTGTTC+CGG 0.354082 3_1:-92488905 None:intergenic
TTATGCAATGGGAAGAATAA+TGG 0.354896 3_1:+92490310 Msa0388160:three_prime_UTR
CCAATGAAGAATCTGAATAC+TGG 0.366030 3_1:+92490359 Msa0388160:three_prime_UTR
TGGCCCATCCTTCTGAGTCT+TGG 0.377407 3_1:-92490281 None:intergenic
AGCTCTCTTTGATATTGTTA+AGG 0.392484 3_1:+92488931 Msa0388160:CDS
GGAACAGAAGCAACACAATC+AGG 0.417769 3_1:-92490414 None:intergenic
CCAGTATTCAGATTCTTCAT+TGG 0.421543 3_1:-92490359 None:intergenic
CTATCACCGTTTCTAATACC+TGG 0.429853 3_1:+92488963 Msa0388160:CDS
TCATTGTTAGCATTAGTTAG+TGG 0.441886 3_1:+92490510 Msa0388160:three_prime_UTR
AGCGTTACCGCTCCCAGCTT+CGG 0.442104 3_1:-92488872 None:intergenic
AGTTTGAGTGGTACCTGGTT+TGG 0.446620 3_1:-92490167 None:intergenic
GAAGAAACTGAAGCCGAAGC+TGG 0.455351 3_1:+92488859 Msa0388160:CDS
ATTTAACACAACCAACCATA+TGG 0.462311 3_1:-92490383 None:intergenic
AATTACCTTGACACGTTCCC+AGG 0.464678 3_1:-92488981 None:intergenic
AAAGCATTCCTTCAAAGAAA+AGG 0.466561 3_1:+92490218 Msa0388160:CDS
AGCACTATGTATTGATGCCT+TGG 0.468698 3_1:+92490474 Msa0388160:three_prime_UTR
CGTCTTGTTTGCAACCATGT+TGG 0.476670 3_1:+92490109 Msa0388160:CDS
TTCCCATTGCATAAAACAGC+TGG 0.482960 3_1:-92490301 None:intergenic
AATCTGAATACTGGGCCATA+TGG 0.489508 3_1:+92490368 Msa0388160:three_prime_UTR
GTTGTAGTTTGAGTGGTACC+TGG 0.498914 3_1:-92490172 None:intergenic
CAATGAAGAATCTGAATACT+GGG 0.500380 3_1:+92490360 Msa0388160:three_prime_UTR
GGTTTGAGAAGAGAAATGTT+TGG 0.500931 3_1:+92488815 Msa0388160:exon
CACAATTCAGAGCTTAACTT+AGG 0.505427 3_1:+92488632 Msa0388160:five_prime_UTR
ACCACTTGGTTTACCAAACC+AGG 0.536017 3_1:+92490154 Msa0388160:CDS
TTTGATATTGTTAAGGAACA+TGG 0.539683 3_1:+92488938 Msa0388160:CDS
TATCACCGTTTCTAATACCT+GGG 0.548790 3_1:+92488964 Msa0388160:CDS
AACAGTTTCTCTATACCACT+TGG 0.548939 3_1:+92490140 Msa0388160:CDS
AAGAAACTGAAGCCGAAGCT+GGG 0.553771 3_1:+92488860 Msa0388160:CDS
CAGGTATTAGAAACGGTGAT+AGG 0.556544 3_1:-92488962 None:intergenic
AAGCCAAGACTCAGAAGGAT+GGG 0.568171 3_1:+92490278 Msa0388160:three_prime_UTR
TAATACCTGGGAACGTGTCA+AGG 0.569738 3_1:+92488976 Msa0388160:CDS
ACGTTCCCAGGTATTAGAAA+CGG 0.576633 3_1:-92488969 None:intergenic
TAAGCCAAGACTCAGAAGGA+TGG 0.579557 3_1:+92490277 Msa0388160:three_prime_UTR
CGTCGTCGTTGTAGTTTGAG+TGG 0.581233 3_1:-92490179 None:intergenic
ATGAGATAAAACAATTGCCA+AGG 0.592832 3_1:-92490491 None:intergenic
TTTACACTAATGAATAACAT+AGG 0.594165 3_1:-92490435 None:intergenic
TGAATACTGGGCCATATGGT+TGG 0.598685 3_1:+92490372 Msa0388160:three_prime_UTR
ACTGAAGCCGAAGCTGGGAG+CGG 0.599839 3_1:+92488865 Msa0388160:CDS
GCCATAAGCCAAGACTCAGA+AGG 0.628117 3_1:+92490273 Msa0388160:three_prime_UTR
GGTAACGCTGACAACGCCGC+CGG 0.632194 3_1:+92488886 Msa0388160:CDS
ACTGTTTATGAGCTCCAACA+TGG 0.634162 3_1:-92490123 None:intergenic
ATTGTTTGTCTCTGTTCCGG+CGG 0.660646 3_1:-92488902 None:intergenic
ACCTGGTTTGGTAAACCAAG+TGG 0.666171 3_1:-92490155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATTTCATAGTAATAATT+AGG - chr3_1:92488683-92488702 None:intergenic 15.0%
!!! TGCTATTTTAGAAATTAATT+TGG + chr3_1:92490563-92490582 Msa0388160:three_prime_UTR 15.0%
!! TTCATTTCATAGTAATAATT+AGG - chr3_1:92488683-92488702 None:intergenic 15.0%
!!! TGCTATTTTAGAAATTAATT+TGG + chr3_1:92490563-92490582 Msa0388160:three_prime_UTR 15.0%
!! TTAAAAACAAACATCATGTA+TGG - chr3_1:92489036-92489055 None:intergenic 20.0%
!! TTTACACTAATGAATAACAT+AGG - chr3_1:92490438-92490457 None:intergenic 20.0%
!! AAATAAGAAAAATCATCAAG+AGG + chr3_1:92490603-92490622 Msa0388160:three_prime_UTR 20.0%
!! AATAAGAAAAATCATCAAGA+GGG + chr3_1:92490604-92490623 Msa0388160:three_prime_UTR 20.0%
!! TTAAAAACAAACATCATGTA+TGG - chr3_1:92489036-92489055 None:intergenic 20.0%
!! TTTACACTAATGAATAACAT+AGG - chr3_1:92490438-92490457 None:intergenic 20.0%
!! AAATAAGAAAAATCATCAAG+AGG + chr3_1:92490603-92490622 Msa0388160:three_prime_UTR 20.0%
!! AATAAGAAAAATCATCAAGA+GGG + chr3_1:92490604-92490623 Msa0388160:three_prime_UTR 20.0%
! AATTAGAGTAGTGAGAAATT+AGG + chr3_1:92488793-92488812 Msa0388160:five_prime_UTR 25.0%
! ATTAGAGTAGTGAGAAATTA+GGG + chr3_1:92488794-92488813 Msa0388160:five_prime_UTR 25.0%
! TTTGATATTGTTAAGGAACA+TGG + chr3_1:92488938-92488957 Msa0388160:CDS 25.0%
!!! ATTGTTTCTGCATTATGTTT+TGG + chr3_1:92489070-92489089 Msa0388160:intron 25.0%
!!! TGTTTTGAAATAGTGATGTA+TGG + chr3_1:92489128-92489147 Msa0388160:intron 25.0%
! CATACTACATTAGATGTAAT+AGG + chr3_1:92489381-92489400 Msa0388160:intron 25.0%
! ACATAAGAATTTACATGGAT+CGG + chr3_1:92489406-92489425 Msa0388160:intron 25.0%
! TAAAACAGTGAAAAAATTGC+TGG - chr3_1:92489448-92489467 None:intergenic 25.0%
! AAAATTGTTACTCTGTTGAA+GGG + chr3_1:92489742-92489761 Msa0388160:intron 25.0%
!!! ATTGTTTTGTTTACTTGTGA+TGG + chr3_1:92489925-92489944 Msa0388160:intron 25.0%
! ACAGATATGTAACATTCATA+AGG - chr3_1:92489954-92489973 None:intergenic 25.0%
! TGTTATTCATTAGTGTAAAC+TGG + chr3_1:92490439-92490458 Msa0388160:three_prime_UTR 25.0%
! TTATTTGTAGCTTCTCTAAA+TGG - chr3_1:92490589-92490608 None:intergenic 25.0%
! AATTAGAGTAGTGAGAAATT+AGG + chr3_1:92488793-92488812 Msa0388160:five_prime_UTR 25.0%
! ATTAGAGTAGTGAGAAATTA+GGG + chr3_1:92488794-92488813 Msa0388160:five_prime_UTR 25.0%
! TTTGATATTGTTAAGGAACA+TGG + chr3_1:92488938-92488957 Msa0388160:CDS 25.0%
!!! ATTGTTTCTGCATTATGTTT+TGG + chr3_1:92489070-92489089 Msa0388160:intron 25.0%
!!! TGTTTTGAAATAGTGATGTA+TGG + chr3_1:92489128-92489147 Msa0388160:intron 25.0%
! CATACTACATTAGATGTAAT+AGG + chr3_1:92489381-92489400 Msa0388160:intron 25.0%
! ACATAAGAATTTACATGGAT+CGG + chr3_1:92489406-92489425 Msa0388160:intron 25.0%
! TAAAACAGTGAAAAAATTGC+TGG - chr3_1:92489448-92489467 None:intergenic 25.0%
! AAAATTGTTACTCTGTTGAA+GGG + chr3_1:92489742-92489761 Msa0388160:intron 25.0%
!!! ATTGTTTTGTTTACTTGTGA+TGG + chr3_1:92489925-92489944 Msa0388160:intron 25.0%
! ACAGATATGTAACATTCATA+AGG - chr3_1:92489954-92489973 None:intergenic 25.0%
! TGTTATTCATTAGTGTAAAC+TGG + chr3_1:92490439-92490458 Msa0388160:three_prime_UTR 25.0%
! TTATTTGTAGCTTCTCTAAA+TGG - chr3_1:92490589-92490608 None:intergenic 25.0%
AGCTCTCTTTGATATTGTTA+AGG + chr3_1:92488931-92488950 Msa0388160:CDS 30.0%
AGGACACATAAGAATTTACA+TGG + chr3_1:92489401-92489420 Msa0388160:intron 30.0%
TAGAATCTTGAAAACTTGTG+TGG + chr3_1:92489488-92489507 Msa0388160:intron 30.0%
GATTACTACTCAAGTTTACA+GGG - chr3_1:92489516-92489535 None:intergenic 30.0%
ATACAAACAAAATCACGTGA+AGG - chr3_1:92489641-92489660 None:intergenic 30.0%
!! ACGTGATTTTGTTTGTATAG+TGG + chr3_1:92489643-92489662 Msa0388160:intron 30.0%
!! TGATTTTGTTTGTATAGTGG+AGG + chr3_1:92489646-92489665 Msa0388160:intron 30.0%
GAAAATTGTTACTCTGTTGA+AGG + chr3_1:92489741-92489760 Msa0388160:intron 30.0%
TTACATATCTGTGCATCTAT+TGG + chr3_1:92489962-92489981 Msa0388160:intron 30.0%
AACTTCCTGGAAAAAATTGA+AGG - chr3_1:92490017-92490036 None:intergenic 30.0%
!!! TTCAATTTTTTCCAGGAAGT+TGG + chr3_1:92490016-92490035 Msa0388160:intron 30.0%
!!! ACATGAAAGTAGTTTTGAGA+TGG + chr3_1:92490065-92490084 Msa0388160:CDS 30.0%
! AAAGCATTCCTTCAAAGAAA+AGG + chr3_1:92490218-92490237 Msa0388160:CDS 30.0%
TTATGCAATGGGAAGAATAA+TGG + chr3_1:92490310-92490329 Msa0388160:three_prime_UTR 30.0%
CAATGAAGAATCTGAATACT+GGG + chr3_1:92490360-92490379 Msa0388160:three_prime_UTR 30.0%
ATTTAACACAACCAACCATA+TGG - chr3_1:92490386-92490405 None:intergenic 30.0%
ATGAGATAAAACAATTGCCA+AGG - chr3_1:92490494-92490513 None:intergenic 30.0%
TCATTGTTAGCATTAGTTAG+TGG + chr3_1:92490510-92490529 Msa0388160:three_prime_UTR 30.0%
AGCTCTCTTTGATATTGTTA+AGG + chr3_1:92488931-92488950 Msa0388160:CDS 30.0%
AGGACACATAAGAATTTACA+TGG + chr3_1:92489401-92489420 Msa0388160:intron 30.0%
TAGAATCTTGAAAACTTGTG+TGG + chr3_1:92489488-92489507 Msa0388160:intron 30.0%
GATTACTACTCAAGTTTACA+GGG - chr3_1:92489516-92489535 None:intergenic 30.0%
ATACAAACAAAATCACGTGA+AGG - chr3_1:92489641-92489660 None:intergenic 30.0%
!! ACGTGATTTTGTTTGTATAG+TGG + chr3_1:92489643-92489662 Msa0388160:intron 30.0%
!! TGATTTTGTTTGTATAGTGG+AGG + chr3_1:92489646-92489665 Msa0388160:intron 30.0%
GAAAATTGTTACTCTGTTGA+AGG + chr3_1:92489741-92489760 Msa0388160:intron 30.0%
TTACATATCTGTGCATCTAT+TGG + chr3_1:92489962-92489981 Msa0388160:intron 30.0%
AACTTCCTGGAAAAAATTGA+AGG - chr3_1:92490017-92490036 None:intergenic 30.0%
!!! TTCAATTTTTTCCAGGAAGT+TGG + chr3_1:92490016-92490035 Msa0388160:intron 30.0%
!!! ACATGAAAGTAGTTTTGAGA+TGG + chr3_1:92490065-92490084 Msa0388160:CDS 30.0%
! AAAGCATTCCTTCAAAGAAA+AGG + chr3_1:92490218-92490237 Msa0388160:CDS 30.0%
TTATGCAATGGGAAGAATAA+TGG + chr3_1:92490310-92490329 Msa0388160:three_prime_UTR 30.0%
CAATGAAGAATCTGAATACT+GGG + chr3_1:92490360-92490379 Msa0388160:three_prime_UTR 30.0%
ATTTAACACAACCAACCATA+TGG - chr3_1:92490386-92490405 None:intergenic 30.0%
ATGAGATAAAACAATTGCCA+AGG - chr3_1:92490494-92490513 None:intergenic 30.0%
TCATTGTTAGCATTAGTTAG+TGG + chr3_1:92490510-92490529 Msa0388160:three_prime_UTR 30.0%
CACAATTCAGAGCTTAACTT+AGG + chr3_1:92488632-92488651 Msa0388160:five_prime_UTR 35.0%
GGTTTGAGAAGAGAAATGTT+TGG + chr3_1:92488815-92488834 Msa0388160:exon 35.0%
GTTATTGTTTGTCTCTGTTC+CGG - chr3_1:92488908-92488927 None:intergenic 35.0%
TATCACCGTTTCTAATACCT+GGG + chr3_1:92488964-92488983 Msa0388160:CDS 35.0%
ATACATATCTACAGTGCTAG+TGG + chr3_1:92489291-92489310 Msa0388160:intron 35.0%
TACATATCTACAGTGCTAGT+GGG + chr3_1:92489292-92489311 Msa0388160:intron 35.0%
CATCTTCTCAGCATTAATTG+CGG - chr3_1:92489333-92489352 None:intergenic 35.0%
GCAATTAATGCTGAGAAGAT+GGG + chr3_1:92489332-92489351 Msa0388160:intron 35.0%
GGATTACTACTCAAGTTTAC+AGG - chr3_1:92489517-92489536 None:intergenic 35.0%
TAATCCACTCAAGGATTTCA+AGG + chr3_1:92489531-92489550 Msa0388160:intron 35.0%
TATTCCTTGAAATCCTTGAG+TGG - chr3_1:92489538-92489557 None:intergenic 35.0%
CCAGGATAAATGTGCAAATA+TGG - chr3_1:92489604-92489623 None:intergenic 35.0%
CCATATTTGCACATTTATCC+TGG + chr3_1:92489601-92489620 Msa0388160:intron 35.0%
AAGGATCAAAACTCAAATCC+AGG - chr3_1:92489622-92489641 None:intergenic 35.0%
!! TTTTGTTTGTATAGTGGAGG+TGG + chr3_1:92489649-92489668 Msa0388160:intron 35.0%
CTGGAAAAAATTGAAGGTCA+TGG - chr3_1:92490011-92490030 None:intergenic 35.0%
!!! CATGACCTTCAATTTTTTCC+AGG + chr3_1:92490009-92490028 Msa0388160:intron 35.0%
AACAGTTTCTCTATACCACT+TGG + chr3_1:92490140-92490159 Msa0388160:CDS 35.0%
CCAGTATTCAGATTCTTCAT+TGG - chr3_1:92490362-92490381 None:intergenic 35.0%
CCAATGAAGAATCTGAATAC+TGG + chr3_1:92490359-92490378 Msa0388160:three_prime_UTR 35.0%
AAATCATCAAGAGGGATTTC+AGG + chr3_1:92490612-92490631 Msa0388160:three_prime_UTR 35.0%
CACAATTCAGAGCTTAACTT+AGG + chr3_1:92488632-92488651 Msa0388160:five_prime_UTR 35.0%
GGTTTGAGAAGAGAAATGTT+TGG + chr3_1:92488815-92488834 Msa0388160:exon 35.0%
GTTATTGTTTGTCTCTGTTC+CGG - chr3_1:92488908-92488927 None:intergenic 35.0%
TATCACCGTTTCTAATACCT+GGG + chr3_1:92488964-92488983 Msa0388160:CDS 35.0%
ATACATATCTACAGTGCTAG+TGG + chr3_1:92489291-92489310 Msa0388160:intron 35.0%
TACATATCTACAGTGCTAGT+GGG + chr3_1:92489292-92489311 Msa0388160:intron 35.0%
CATCTTCTCAGCATTAATTG+CGG - chr3_1:92489333-92489352 None:intergenic 35.0%
GCAATTAATGCTGAGAAGAT+GGG + chr3_1:92489332-92489351 Msa0388160:intron 35.0%
GGATTACTACTCAAGTTTAC+AGG - chr3_1:92489517-92489536 None:intergenic 35.0%
TAATCCACTCAAGGATTTCA+AGG + chr3_1:92489531-92489550 Msa0388160:intron 35.0%
TATTCCTTGAAATCCTTGAG+TGG - chr3_1:92489538-92489557 None:intergenic 35.0%
CCAGGATAAATGTGCAAATA+TGG - chr3_1:92489604-92489623 None:intergenic 35.0%
CCATATTTGCACATTTATCC+TGG + chr3_1:92489601-92489620 Msa0388160:intron 35.0%
AAGGATCAAAACTCAAATCC+AGG - chr3_1:92489622-92489641 None:intergenic 35.0%
!! TTTTGTTTGTATAGTGGAGG+TGG + chr3_1:92489649-92489668 Msa0388160:intron 35.0%
CTGGAAAAAATTGAAGGTCA+TGG - chr3_1:92490011-92490030 None:intergenic 35.0%
!!! CATGACCTTCAATTTTTTCC+AGG + chr3_1:92490009-92490028 Msa0388160:intron 35.0%
AACAGTTTCTCTATACCACT+TGG + chr3_1:92490140-92490159 Msa0388160:CDS 35.0%
CCAGTATTCAGATTCTTCAT+TGG - chr3_1:92490362-92490381 None:intergenic 35.0%
CCAATGAAGAATCTGAATAC+TGG + chr3_1:92490359-92490378 Msa0388160:three_prime_UTR 35.0%
CAGGTATTAGAAACGGTGAT+AGG - chr3_1:92488965-92488984 None:intergenic 40.0%
CTATCACCGTTTCTAATACC+TGG + chr3_1:92488963-92488982 Msa0388160:CDS 40.0%
ACGTTCCCAGGTATTAGAAA+CGG - chr3_1:92488972-92488991 None:intergenic 40.0%
AATAATTCGCTATTGTGCCC+TGG + chr3_1:92489170-92489189 Msa0388160:intron 40.0%
CGCAATTAATGCTGAGAAGA+TGG + chr3_1:92489331-92489350 Msa0388160:intron 40.0%
TTTACATGGATCGGAGTCTA+AGG + chr3_1:92489415-92489434 Msa0388160:intron 40.0%
CTTGAGTAGTAATCCACTCA+AGG + chr3_1:92489522-92489541 Msa0388160:intron 40.0%
GATCTTTCAATCCAACTTCC+TGG - chr3_1:92490030-92490049 None:intergenic 40.0%
ACTGTTTATGAGCTCCAACA+TGG - chr3_1:92490126-92490145 None:intergenic 40.0%
TTCCCATTGCATAAAACAGC+TGG - chr3_1:92490304-92490323 None:intergenic 40.0%
AATCTGAATACTGGGCCATA+TGG + chr3_1:92490368-92490387 Msa0388160:three_prime_UTR 40.0%
! AGCACTATGTATTGATGCCT+TGG + chr3_1:92490474-92490493 Msa0388160:three_prime_UTR 40.0%
CAGGTATTAGAAACGGTGAT+AGG - chr3_1:92488965-92488984 None:intergenic 40.0%
CTATCACCGTTTCTAATACC+TGG + chr3_1:92488963-92488982 Msa0388160:CDS 40.0%
ACGTTCCCAGGTATTAGAAA+CGG - chr3_1:92488972-92488991 None:intergenic 40.0%
AATAATTCGCTATTGTGCCC+TGG + chr3_1:92489170-92489189 Msa0388160:intron 40.0%
CGCAATTAATGCTGAGAAGA+TGG + chr3_1:92489331-92489350 Msa0388160:intron 40.0%
TTTACATGGATCGGAGTCTA+AGG + chr3_1:92489415-92489434 Msa0388160:intron 40.0%
CTTGAGTAGTAATCCACTCA+AGG + chr3_1:92489522-92489541 Msa0388160:intron 40.0%
GATCTTTCAATCCAACTTCC+TGG - chr3_1:92490030-92490049 None:intergenic 40.0%
ACTGTTTATGAGCTCCAACA+TGG - chr3_1:92490126-92490145 None:intergenic 40.0%
TTCCCATTGCATAAAACAGC+TGG - chr3_1:92490304-92490323 None:intergenic 40.0%
AATCTGAATACTGGGCCATA+TGG + chr3_1:92490368-92490387 Msa0388160:three_prime_UTR 40.0%
! AGCACTATGTATTGATGCCT+TGG + chr3_1:92490474-92490493 Msa0388160:three_prime_UTR 40.0%
AAGAAACTGAAGCCGAAGCT+GGG + chr3_1:92488860-92488879 Msa0388160:CDS 45.0%
ATTGTTTGTCTCTGTTCCGG+CGG - chr3_1:92488905-92488924 None:intergenic 45.0%
TAATACCTGGGAACGTGTCA+AGG + chr3_1:92488976-92488995 Msa0388160:CDS 45.0%
AATTACCTTGACACGTTCCC+AGG - chr3_1:92488984-92489003 None:intergenic 45.0%
CTGTCCTAAATAGCGTACCA+GGG - chr3_1:92489190-92489209 None:intergenic 45.0%
ACTGTCCTAAATAGCGTACC+AGG - chr3_1:92489191-92489210 None:intergenic 45.0%
AGATGGGTGTGTTGGATGTT+TGG + chr3_1:92489348-92489367 Msa0388160:intron 45.0%
! TGTTTGTATAGTGGAGGTGG+AGG + chr3_1:92489652-92489671 Msa0388160:intron 45.0%
! GTTTGTATAGTGGAGGTGGA+GGG + chr3_1:92489653-92489672 Msa0388160:intron 45.0%
!! GAGGGAAAGTGACTTGTTCA+AGG + chr3_1:92489671-92489690 Msa0388160:intron 45.0%
!! CGTCTTGTTTGCAACCATGT+TGG + chr3_1:92490109-92490128 Msa0388160:CDS 45.0%
ACCACTTGGTTTACCAAACC+AGG + chr3_1:92490154-92490173 Msa0388160:CDS 45.0%
!! ACCTGGTTTGGTAAACCAAG+TGG - chr3_1:92490158-92490177 None:intergenic 45.0%
AGTTTGAGTGGTACCTGGTT+TGG - chr3_1:92490170-92490189 None:intergenic 45.0%
GTTGTAGTTTGAGTGGTACC+TGG - chr3_1:92490175-92490194 None:intergenic 45.0%
!!! CGTGCTAGCCTTTTCTTTGA+AGG - chr3_1:92490229-92490248 None:intergenic 45.0%
TCCTTCTGAGTCTTGGCTTA+TGG - chr3_1:92490277-92490296 None:intergenic 45.0%
TAAGCCAAGACTCAGAAGGA+TGG + chr3_1:92490277-92490296 Msa0388160:three_prime_UTR 45.0%
AAGCCAAGACTCAGAAGGAT+GGG + chr3_1:92490278-92490297 Msa0388160:three_prime_UTR 45.0%
!! GGCCAGCTGTTTTATGCAAT+GGG + chr3_1:92490299-92490318 Msa0388160:three_prime_UTR 45.0%
TGAATACTGGGCCATATGGT+TGG + chr3_1:92490372-92490391 Msa0388160:three_prime_UTR 45.0%
GGAACAGAAGCAACACAATC+AGG - chr3_1:92490417-92490436 None:intergenic 45.0%
AAGAAACTGAAGCCGAAGCT+GGG + chr3_1:92488860-92488879 Msa0388160:CDS 45.0%
ATTGTTTGTCTCTGTTCCGG+CGG - chr3_1:92488905-92488924 None:intergenic 45.0%
TAATACCTGGGAACGTGTCA+AGG + chr3_1:92488976-92488995 Msa0388160:CDS 45.0%
AATTACCTTGACACGTTCCC+AGG - chr3_1:92488984-92489003 None:intergenic 45.0%
CTGTCCTAAATAGCGTACCA+GGG - chr3_1:92489190-92489209 None:intergenic 45.0%
ACTGTCCTAAATAGCGTACC+AGG - chr3_1:92489191-92489210 None:intergenic 45.0%
AGATGGGTGTGTTGGATGTT+TGG + chr3_1:92489348-92489367 Msa0388160:intron 45.0%
! TGTTTGTATAGTGGAGGTGG+AGG + chr3_1:92489652-92489671 Msa0388160:intron 45.0%
! GTTTGTATAGTGGAGGTGGA+GGG + chr3_1:92489653-92489672 Msa0388160:intron 45.0%
!! GAGGGAAAGTGACTTGTTCA+AGG + chr3_1:92489671-92489690 Msa0388160:intron 45.0%
!! CGTCTTGTTTGCAACCATGT+TGG + chr3_1:92490109-92490128 Msa0388160:CDS 45.0%
ACCACTTGGTTTACCAAACC+AGG + chr3_1:92490154-92490173 Msa0388160:CDS 45.0%
!! ACCTGGTTTGGTAAACCAAG+TGG - chr3_1:92490158-92490177 None:intergenic 45.0%
AGTTTGAGTGGTACCTGGTT+TGG - chr3_1:92490170-92490189 None:intergenic 45.0%
GTTGTAGTTTGAGTGGTACC+TGG - chr3_1:92490175-92490194 None:intergenic 45.0%
!!! CGTGCTAGCCTTTTCTTTGA+AGG - chr3_1:92490229-92490248 None:intergenic 45.0%
TCCTTCTGAGTCTTGGCTTA+TGG - chr3_1:92490277-92490296 None:intergenic 45.0%
TAAGCCAAGACTCAGAAGGA+TGG + chr3_1:92490277-92490296 Msa0388160:three_prime_UTR 45.0%
AAGCCAAGACTCAGAAGGAT+GGG + chr3_1:92490278-92490297 Msa0388160:three_prime_UTR 45.0%
!! GGCCAGCTGTTTTATGCAAT+GGG + chr3_1:92490299-92490318 Msa0388160:three_prime_UTR 45.0%
TGAATACTGGGCCATATGGT+TGG + chr3_1:92490372-92490391 Msa0388160:three_prime_UTR 45.0%
GGAACAGAAGCAACACAATC+AGG - chr3_1:92490417-92490436 None:intergenic 45.0%
GAAGAAACTGAAGCCGAAGC+TGG + chr3_1:92488859-92488878 Msa0388160:CDS 50.0%
TGTGCCCTGGTACGCTATTT+AGG + chr3_1:92489183-92489202 Msa0388160:intron 50.0%
TGCTGAGAAGATGGGTGTGT+TGG + chr3_1:92489340-92489359 Msa0388160:intron 50.0%
CGTCGTCGTTGTAGTTTGAG+TGG - chr3_1:92490182-92490201 None:intergenic 50.0%
GCCATAAGCCAAGACTCAGA+AGG + chr3_1:92490273-92490292 Msa0388160:three_prime_UTR 50.0%
!! GGGCCAGCTGTTTTATGCAA+TGG + chr3_1:92490298-92490317 Msa0388160:three_prime_UTR 50.0%
GAAGAAACTGAAGCCGAAGC+TGG + chr3_1:92488859-92488878 Msa0388160:CDS 50.0%
TGTGCCCTGGTACGCTATTT+AGG + chr3_1:92489183-92489202 Msa0388160:intron 50.0%
TGCTGAGAAGATGGGTGTGT+TGG + chr3_1:92489340-92489359 Msa0388160:intron 50.0%
CGTCGTCGTTGTAGTTTGAG+TGG - chr3_1:92490182-92490201 None:intergenic 50.0%
GCCATAAGCCAAGACTCAGA+AGG + chr3_1:92490273-92490292 Msa0388160:three_prime_UTR 50.0%
!! GGGCCAGCTGTTTTATGCAA+TGG + chr3_1:92490298-92490317 Msa0388160:three_prime_UTR 50.0%
TGGCCCATCCTTCTGAGTCT+TGG - chr3_1:92490284-92490303 None:intergenic 55.0%
TGGCCCATCCTTCTGAGTCT+TGG - chr3_1:92490284-92490303 None:intergenic 55.0%
ACTGAAGCCGAAGCTGGGAG+CGG + chr3_1:92488865-92488884 Msa0388160:CDS 60.0%
AGCGTTACCGCTCCCAGCTT+CGG - chr3_1:92488875-92488894 None:intergenic 60.0%
ACTGAAGCCGAAGCTGGGAG+CGG + chr3_1:92488865-92488884 Msa0388160:CDS 60.0%
AGCGTTACCGCTCCCAGCTT+CGG - chr3_1:92488875-92488894 None:intergenic 60.0%
GGTAACGCTGACAACGCCGC+CGG + chr3_1:92488886-92488905 Msa0388160:CDS 65.0%
GGTAACGCTGACAACGCCGC+CGG + chr3_1:92488886-92488905 Msa0388160:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 92488599 92490633 92488599 ID=Msa0388160;Name=Msa0388160
chr3_1 mRNA 92488599 92490633 92488599 ID=Msa0388160-mRNA-1;Parent=Msa0388160;Name=Msa0388160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=112|1|1|1|0.5|0.33|3|378|130
chr3_1 exon 92488599 92488653 92488599 ID=Msa0388160-mRNA-1:exon:25990;Parent=Msa0388160-mRNA-1
chr3_1 exon 92488773 92488997 92488773 ID=Msa0388160-mRNA-1:exon:25991;Parent=Msa0388160-mRNA-1
chr3_1 exon 92490031 92490633 92490031 ID=Msa0388160-mRNA-1:exon:25992;Parent=Msa0388160-mRNA-1
chr3_1 five_prime_UTR 92488599 92488653 92488599 ID=Msa0388160-mRNA-1:five_prime_utr;Parent=Msa0388160-mRNA-1
chr3_1 five_prime_UTR 92488773 92488829 92488773 ID=Msa0388160-mRNA-1:five_prime_utr;Parent=Msa0388160-mRNA-1
chr3_1 CDS 92488830 92488997 92488830 ID=Msa0388160-mRNA-1:cds;Parent=Msa0388160-mRNA-1
chr3_1 CDS 92490031 92490255 92490031 ID=Msa0388160-mRNA-1:cds;Parent=Msa0388160-mRNA-1
chr3_1 three_prime_UTR 92490256 92490633 92490256 ID=Msa0388160-mRNA-1:three_prime_utr;Parent=Msa0388160-mRNA-1
Gene Sequence

>Msa0388160

ATGTTTGGAACAGCGATTAGAAATGCAGCGAAGAAACTGAAGCCGAAGCTGGGAGCGGTAACGCTGACAACGCCGCCGGAACAGAGACAAACAATAACAAGAGCTCTCTTTGATATTGTTAAGGAACATGGTCCTATCACCGTTTCTAATACCTGGGAACGTGTCAAGGAAGTTGGATTGAAAGATCTGACAAGCAAGAATCACATGAAAGTAGTTTTGAGATGGATGAGAGAGAGACAGAAGCTTCGTCTTGTTTGCAACCATGTTGGAGCTCATAAACAGTTTCTCTATACCACTTGGTTTACCAAACCAGGTACCACTCAAACTACAACGACGACGACAACAACAACAACGAAAAGCATTCCTTCAAAGAAAAGGCTAGCACGATCTTGA
Protein sequence

>Msa0388160

MFGTAIRNAAKKLKPKLGAVTLTTPPEQRQTITRALFDIVKEHGPITVSNTWERVKEVGLKDLTSKNHMKVVLRWMRERQKLRLVCNHVGAHKQFLYTTWFTKPGTTQTTTTTTTTTTKSIPSKKRLARS*