AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388890 MtrunA17_Chr6g0461291 95.455 110 5 0 1 110 1 110 6.15e-73 214
Msa0388890 MtrunA17_Chr7g0273571 60.194 103 40 1 8 110 2 103 3.76e-38 125
Msa0388890 MtrunA17_Chr4g0028001 56.842 95 40 1 16 110 63 156 5.58e-31 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388890 AT5G18100.2 68.182 110 34 1 1 110 1 109 1.07e-49 154
Msa0388890 AT5G18100.1 68.182 110 34 1 1 110 1 109 1.16e-49 155
Msa0388890 AT1G08830.2 57.282 103 43 1 8 110 2 103 2.39e-35 119
Msa0388890 AT1G08830.1 57.282 103 43 1 8 110 2 103 2.39e-35 119
Msa0388890 AT2G28190.1 56.863 102 43 1 9 110 66 166 3.10e-32 112

Find 36 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGTAACTGGAAAGATAAC+AGG 0.310063 3_1:-93355437 Msa0388890:CDS
GGGAATTATACACATGTAAC+TGG 0.341579 3_1:-93355449 Msa0388890:CDS
GATTTGGGTAACATTGTTGC+AGG 0.348387 3_1:-93355070 Msa0388890:CDS
GGGTTGTCTCCAGGTCTTCA+TGG 0.372926 3_1:-93355416 Msa0388890:CDS
GAGCGACATGCCGGTGATTT+GGG 0.381125 3_1:-93355085 Msa0388890:CDS
TGAGCGACATGCCGGTGATT+TGG 0.389627 3_1:-93355086 Msa0388890:CDS
GGATTTCATATTCATGCTCT+TGG 0.401989 3_1:-93355395 Msa0388890:CDS
ATCGGAGATAACAACGTTAG+AGG 0.441505 3_1:-93356766 Msa0388890:CDS
ACCAATGGCTGCAACTCCAC+TGG 0.499697 3_1:-93355365 Msa0388890:intron
AATCCACTCAAGAAGGATCA+TGG 0.509101 3_1:-93355124 Msa0388890:CDS
ACCAGTGGAGTTGCAGCCAT+TGG 0.511673 3_1:+93355364 None:intergenic
GATTTCTGTCAGAGATGAAA+AGG 0.518213 3_1:-93354926 Msa0388890:CDS
AACATTGTTGCAGGCCCTGA+TGG 0.520070 3_1:-93355061 Msa0388890:intron
AAGATAACAGGGTTGTCTCC+AGG 0.523191 3_1:-93355425 Msa0388890:CDS
TAATGAGATGGAAGGTGGAA+AGG 0.524799 3_1:-93356815 Msa0388890:exon
AATGAGATGGAAGGTGGAAA+GGG 0.525384 3_1:-93356814 Msa0388890:exon
GAGTGTAATGAGATGGAAGG+TGG 0.525509 3_1:-93356820 Msa0388890:exon
GGTGGAAAGGGAACAGTGAA+AGG 0.528789 3_1:-93356802 Msa0388890:CDS
GAACAGAGAGTGTAATGAGA+TGG 0.532099 3_1:-93356827 Msa0388890:exon
ACCGGCATGTCGCTCATCAT+CGG 0.536041 3_1:+93355093 None:intergenic
CACTTTGTTCAAGACCCCAA+TGG 0.540843 3_1:-93356736 Msa0388890:intron
GCTCCATGATCCTTCTTGAG+TGG 0.545993 3_1:+93355121 None:intergenic
AAAGGTGTGGCTCTCATCAT+CGG 0.560465 3_1:-93356784 Msa0388890:CDS
TCACTTCAATCCACTCAAGA+AGG 0.563861 3_1:-93355131 Msa0388890:CDS
AACAATGTTACCCAAATCAC+CGG 0.572762 3_1:+93355075 None:intergenic
AGTGGAGTTGCAGCCATTGG+TGG 0.573666 3_1:+93355367 None:intergenic
ACCGATGATGAGCGACATGC+CGG 0.578862 3_1:-93355094 Msa0388890:CDS
GCTCTTGGTGACACCACCAA+TGG 0.586374 3_1:-93355380 Msa0388890:CDS
AGAGAGTGTAATGAGATGGA+AGG 0.601142 3_1:-93356823 Msa0388890:exon
ATATGAAATCCATGAAGACC+TGG 0.612117 3_1:+93355407 None:intergenic
TTCTTGAGTGGATTGAAGTG+AGG 0.612233 3_1:+93355133 None:intergenic
GCATGTCGCTCATCATCGGT+CGG 0.638547 3_1:+93355097 None:intergenic
GAAAGATGGTAATACCATCA+GGG 0.655512 3_1:+93355047 None:intergenic
ATGTAACTGGAAAGATAACA+GGG 0.689780 3_1:-93355436 Msa0388890:CDS
AAAGGGAACAGTGAAAGGTG+TGG 0.714226 3_1:-93356797 Msa0388890:CDS
AGAGAGAGAAAGAACCATTG+GGG 0.717171 3_1:+93356722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATATTTATTTTCAATGT+GGG - chr3_1:93355306-93355325 Msa0388890:intron 15.0%
!! TATCATATTAGATAAATATC+AGG - chr3_1:93355546-93355565 Msa0388890:intron 15.0%
!!! CTATGTTATGATTTTATATT+AGG - chr3_1:93356178-93356197 Msa0388890:intron 15.0%
!!! ATGATATTTATTTTCAATGT+GGG - chr3_1:93355306-93355325 Msa0388890:intron 15.0%
!! TATCATATTAGATAAATATC+AGG - chr3_1:93355546-93355565 Msa0388890:intron 15.0%
!!! CTATGTTATGATTTTATATT+AGG - chr3_1:93356178-93356197 Msa0388890:intron 15.0%
!! TATATTTCATGTTTCATAAG+AGG + chr3_1:93355088-93355107 None:intergenic 20.0%
!!! GATGATATTTATTTTCAATG+TGG - chr3_1:93355305-93355324 Msa0388890:intron 20.0%
!! AAAAAAAAAAACAGCTTGTA+AGG - chr3_1:93355709-93355728 Msa0388890:intron 20.0%
!! CAATTCATAGTTTATCTATT+TGG + chr3_1:93355833-93355852 None:intergenic 20.0%
!! CAAATAGATAAACTATGAAT+TGG - chr3_1:93355831-93355850 Msa0388890:intron 20.0%
!!! CTATGAATTGGTTTTTATAT+TGG - chr3_1:93355843-93355862 Msa0388890:intron 20.0%
!!! TCTTATTATTTTTACAAAGC+TGG - chr3_1:93356029-93356048 Msa0388890:intron 20.0%
!! ATCATAACATAGTATCTATT+CGG + chr3_1:93356170-93356189 None:intergenic 20.0%
!! ATATTGAATAATGAGAAAAG+TGG + chr3_1:93356426-93356445 None:intergenic 20.0%
!! ATAAAAAAGAAGAAGAAAGA+TGG + chr3_1:93356728-93356747 None:intergenic 20.0%
!! TATATTTCATGTTTCATAAG+AGG + chr3_1:93355088-93355107 None:intergenic 20.0%
!!! GATGATATTTATTTTCAATG+TGG - chr3_1:93355305-93355324 Msa0388890:intron 20.0%
!! AAAAAAAAAAACAGCTTGTA+AGG - chr3_1:93355709-93355728 Msa0388890:intron 20.0%
!! CAATTCATAGTTTATCTATT+TGG + chr3_1:93355833-93355852 None:intergenic 20.0%
!! CAAATAGATAAACTATGAAT+TGG - chr3_1:93355831-93355850 Msa0388890:intron 20.0%
!!! CTATGAATTGGTTTTTATAT+TGG - chr3_1:93355843-93355862 Msa0388890:intron 20.0%
!!! TCTTATTATTTTTACAAAGC+TGG - chr3_1:93356029-93356048 Msa0388890:intron 20.0%
!! ATCATAACATAGTATCTATT+CGG + chr3_1:93356170-93356189 None:intergenic 20.0%
!! ATATTGAATAATGAGAAAAG+TGG + chr3_1:93356426-93356445 None:intergenic 20.0%
!! ATAAAAAAGAAGAAGAAAGA+TGG + chr3_1:93356728-93356747 None:intergenic 20.0%
! ATAATTCATTCTTACCAAAC+CGG - chr3_1:93355408-93355427 Msa0388890:CDS 25.0%
!!! TTTCAGGTTTTATTTCTCTT+TGG - chr3_1:93356239-93356258 Msa0388890:intron 25.0%
! ATGTATTCAATGTAAAGCAT+CGG + chr3_1:93356469-93356488 None:intergenic 25.0%
!! CACTTTCCTTTTCAAATATT+CGG + chr3_1:93356528-93356547 None:intergenic 25.0%
!! AAGTGTTTCAATGCAAATTT+TGG - chr3_1:93356580-93356599 Msa0388890:intron 25.0%
! ATAATTCATTCTTACCAAAC+CGG - chr3_1:93355408-93355427 Msa0388890:CDS 25.0%
!!! TTTCAGGTTTTATTTCTCTT+TGG - chr3_1:93356239-93356258 Msa0388890:intron 25.0%
! ATGTATTCAATGTAAAGCAT+CGG + chr3_1:93356469-93356488 None:intergenic 25.0%
!! CACTTTCCTTTTCAAATATT+CGG + chr3_1:93356528-93356547 None:intergenic 25.0%
!! AAGTGTTTCAATGCAAATTT+TGG - chr3_1:93356580-93356599 Msa0388890:intron 25.0%
! TTATTTTCAATGTGGGACTT+TGG - chr3_1:93355313-93355332 Msa0388890:intron 30.0%
!! TCTATCTATTTGGTAGTGTT+TGG + chr3_1:93355363-93355382 None:intergenic 30.0%
CAATTCACAGTCTATCTATT+TGG + chr3_1:93355373-93355392 None:intergenic 30.0%
CAAATAGATAGACTGTGAAT+TGG - chr3_1:93355371-93355390 Msa0388890:CDS 30.0%
TCTATGTATTCGGTAATGTT+TGG + chr3_1:93355520-93355539 None:intergenic 30.0%
GATATCAGAGTCTATGTATT+CGG + chr3_1:93355530-93355549 None:intergenic 30.0%
GTTTATACGCTGAATATGTA+AGG + chr3_1:93355581-93355600 None:intergenic 30.0%
CATTGAAAAAAGATATCGTC+TGG + chr3_1:93355765-93355784 None:intergenic 30.0%
!!! CTTTTTTCAATGTGTGACTT+CGG - chr3_1:93355773-93355792 Msa0388890:intron 30.0%
CAGAAATAGTTTACAAAGAG+TGG + chr3_1:93356074-93356093 None:intergenic 30.0%
CACTCTTTGTAAACTATTTC+TGG - chr3_1:93356072-93356091 Msa0388890:intron 30.0%
TGAAAAGAGTTAACACAAAC+TGG + chr3_1:93356224-93356243 None:intergenic 30.0%
! AGTTTGTGTTAACTCTTTTC+AGG - chr3_1:93356223-93356242 Msa0388890:intron 30.0%
ATGTAACTGGAAAGATAACA+GGG - chr3_1:93356322-93356341 Msa0388890:intron 30.0%
TGAGAACCGAATATTTGAAA+AGG - chr3_1:93356519-93356538 Msa0388890:intron 30.0%
! TTATTTTCAATGTGGGACTT+TGG - chr3_1:93355313-93355332 Msa0388890:intron 30.0%
!! TCTATCTATTTGGTAGTGTT+TGG + chr3_1:93355363-93355382 None:intergenic 30.0%
CAATTCACAGTCTATCTATT+TGG + chr3_1:93355373-93355392 None:intergenic 30.0%
CAAATAGATAGACTGTGAAT+TGG - chr3_1:93355371-93355390 Msa0388890:CDS 30.0%
TCTATGTATTCGGTAATGTT+TGG + chr3_1:93355520-93355539 None:intergenic 30.0%
GATATCAGAGTCTATGTATT+CGG + chr3_1:93355530-93355549 None:intergenic 30.0%
GTTTATACGCTGAATATGTA+AGG + chr3_1:93355581-93355600 None:intergenic 30.0%
CATTGAAAAAAGATATCGTC+TGG + chr3_1:93355765-93355784 None:intergenic 30.0%
!!! CTTTTTTCAATGTGTGACTT+CGG - chr3_1:93355773-93355792 Msa0388890:intron 30.0%
CAGAAATAGTTTACAAAGAG+TGG + chr3_1:93356074-93356093 None:intergenic 30.0%
CACTCTTTGTAAACTATTTC+TGG - chr3_1:93356072-93356091 Msa0388890:intron 30.0%
TGAAAAGAGTTAACACAAAC+TGG + chr3_1:93356224-93356243 None:intergenic 30.0%
! AGTTTGTGTTAACTCTTTTC+AGG - chr3_1:93356223-93356242 Msa0388890:intron 30.0%
ATGTAACTGGAAAGATAACA+GGG - chr3_1:93356322-93356341 Msa0388890:intron 30.0%
TGAGAACCGAATATTTGAAA+AGG - chr3_1:93356519-93356538 Msa0388890:intron 30.0%
!! TTTGGTAGTGTTTGGCATAA+GGG + chr3_1:93355355-93355374 None:intergenic 35.0%
!! ATTTGGTAGTGTTTGGCATA+AGG + chr3_1:93355356-93355375 None:intergenic 35.0%
TCGGTAATGTTTGGCATAAA+GGG + chr3_1:93355511-93355530 None:intergenic 35.0%
TTCGGTAATGTTTGGCATAA+AGG + chr3_1:93355512-93355531 None:intergenic 35.0%
ATAAACCACTTCAATTAGCC+TGG - chr3_1:93355595-93355614 Msa0388890:intron 35.0%
! ATTAGCCTGAAATTGCCATT+GGG + chr3_1:93355678-93355697 None:intergenic 35.0%
! AATTAGCCTGAAATTGCCAT+TGG + chr3_1:93355679-93355698 None:intergenic 35.0%
!! CGGTTTGGTATGTATGAATT+AGG + chr3_1:93355869-93355888 None:intergenic 35.0%
TTTATATGTTCAGTAGCCCT+TGG + chr3_1:93355979-93355998 None:intergenic 35.0%
AGTATCTATTCGGTAATGCT+TGG + chr3_1:93356160-93356179 None:intergenic 35.0%
AACTATGATTGTGATTGTGC+AGG - chr3_1:93356288-93356307 Msa0388890:intron 35.0%
ACTATGATTGTGATTGTGCA+GGG - chr3_1:93356289-93356308 Msa0388890:intron 35.0%
GGGAATTATACACATGTAAC+TGG - chr3_1:93356309-93356328 Msa0388890:intron 35.0%
CATGTAACTGGAAAGATAAC+AGG - chr3_1:93356321-93356340 Msa0388890:intron 35.0%
ATATGAAATCCATGAAGACC+TGG + chr3_1:93356354-93356373 None:intergenic 35.0%
GGATTTCATATTCATGCTCT+TGG - chr3_1:93356363-93356382 Msa0388890:intron 35.0%
AACAATGTTACCCAAATCAC+CGG + chr3_1:93356686-93356705 None:intergenic 35.0%
GAAAGATGGTAATACCATCA+GGG + chr3_1:93356714-93356733 None:intergenic 35.0%
AGAAAGATGGTAATACCATC+AGG + chr3_1:93356715-93356734 None:intergenic 35.0%
TGCAAAACAGAAAACTCTCA+AGG + chr3_1:93356801-93356820 None:intergenic 35.0%
! TTGAGAGTTTTCTGTTTTGC+AGG - chr3_1:93356800-93356819 Msa0388890:CDS 35.0%
GATTTCTGTCAGAGATGAAA+AGG - chr3_1:93356832-93356851 Msa0388890:five_prime_UTR 35.0%
!! TTTGGTAGTGTTTGGCATAA+GGG + chr3_1:93355355-93355374 None:intergenic 35.0%
!! ATTTGGTAGTGTTTGGCATA+AGG + chr3_1:93355356-93355375 None:intergenic 35.0%
TCGGTAATGTTTGGCATAAA+GGG + chr3_1:93355511-93355530 None:intergenic 35.0%
TTCGGTAATGTTTGGCATAA+AGG + chr3_1:93355512-93355531 None:intergenic 35.0%
ATAAACCACTTCAATTAGCC+TGG - chr3_1:93355595-93355614 Msa0388890:intron 35.0%
! ATTAGCCTGAAATTGCCATT+GGG + chr3_1:93355678-93355697 None:intergenic 35.0%
! AATTAGCCTGAAATTGCCAT+TGG + chr3_1:93355679-93355698 None:intergenic 35.0%
!! CGGTTTGGTATGTATGAATT+AGG + chr3_1:93355869-93355888 None:intergenic 35.0%
TTTATATGTTCAGTAGCCCT+TGG + chr3_1:93355979-93355998 None:intergenic 35.0%
AGTATCTATTCGGTAATGCT+TGG + chr3_1:93356160-93356179 None:intergenic 35.0%
AACTATGATTGTGATTGTGC+AGG - chr3_1:93356288-93356307 Msa0388890:intron 35.0%
ACTATGATTGTGATTGTGCA+GGG - chr3_1:93356289-93356308 Msa0388890:intron 35.0%
GGGAATTATACACATGTAAC+TGG - chr3_1:93356309-93356328 Msa0388890:intron 35.0%
CATGTAACTGGAAAGATAAC+AGG - chr3_1:93356321-93356340 Msa0388890:intron 35.0%
ATATGAAATCCATGAAGACC+TGG + chr3_1:93356354-93356373 None:intergenic 35.0%
GGATTTCATATTCATGCTCT+TGG - chr3_1:93356363-93356382 Msa0388890:intron 35.0%
AACAATGTTACCCAAATCAC+CGG + chr3_1:93356686-93356705 None:intergenic 35.0%
GAAAGATGGTAATACCATCA+GGG + chr3_1:93356714-93356733 None:intergenic 35.0%
AGAAAGATGGTAATACCATC+AGG + chr3_1:93356715-93356734 None:intergenic 35.0%
TGCAAAACAGAAAACTCTCA+AGG + chr3_1:93356801-93356820 None:intergenic 35.0%
! TTGAGAGTTTTCTGTTTTGC+AGG - chr3_1:93356800-93356819 Msa0388890:CDS 35.0%
GATTTCTGTCAGAGATGAAA+AGG - chr3_1:93356832-93356851 Msa0388890:five_prime_UTR 35.0%
! GAACAGAGAGTGTAATGAGA+TGG - chr3_1:93354931-93354950 Msa0388890:CDS 40.0%
! AGAGAGTGTAATGAGATGGA+AGG - chr3_1:93354935-93354954 Msa0388890:CDS 40.0%
TAATGAGATGGAAGGTGGAA+AGG - chr3_1:93354943-93354962 Msa0388890:intron 40.0%
AATGAGATGGAAGGTGGAAA+GGG - chr3_1:93354944-93354963 Msa0388890:intron 40.0%
ATCGGAGATAACAACGTTAG+AGG - chr3_1:93354992-93355011 Msa0388890:intron 40.0%
AGAGAGAGAAAGAACCATTG+GGG + chr3_1:93355039-93355058 None:intergenic 40.0%
GAGAGAGAGAAAGAACCATT+GGG + chr3_1:93355040-93355059 None:intergenic 40.0%
AGAGAGAGAGAAAGAACCAT+TGG + chr3_1:93355041-93355060 None:intergenic 40.0%
!! CCATTGCTTATGGTTTTGCA+AGG + chr3_1:93355256-93355275 None:intergenic 40.0%
CCTTGCAAAACCATAAGCAA+TGG - chr3_1:93355253-93355272 Msa0388890:intron 40.0%
TGCAAAACCATAAGCAATGG+AGG - chr3_1:93355256-93355275 Msa0388890:intron 40.0%
GCAAAACCATAAGCAATGGA+GGG - chr3_1:93355257-93355276 Msa0388890:intron 40.0%
!! TTGGTAGTGTTTGGCATAAG+GGG + chr3_1:93355354-93355373 None:intergenic 40.0%
! TGTTACTTGGTCTCACTCTT+TGG - chr3_1:93355433-93355452 Msa0388890:CDS 40.0%
!!! GTGGTCTTGACTTGGTATTT+TGG - chr3_1:93355617-93355636 Msa0388890:intron 40.0%
TTAGCCTGAAATTGCCATTG+GGG + chr3_1:93355677-93355696 None:intergenic 40.0%
AAAAAACAGCTTGTAAGGCG+AGG - chr3_1:93355714-93355733 Msa0388890:intron 40.0%
AAAAACAGCTTGTAAGGCGA+GGG - chr3_1:93355715-93355734 Msa0388890:intron 40.0%
TTTGGCAGTGTTTGACGTAA+GGG + chr3_1:93355815-93355834 None:intergenic 40.0%
ATTTGGCAGTGTTTGACGTA+AGG + chr3_1:93355816-93355835 None:intergenic 40.0%
!! ACATACCAAACCGACTTGTA+AGG - chr3_1:93355876-93355895 Msa0388890:intron 40.0%
!! CATACCAAACCGACTTGTAA+GGG - chr3_1:93355877-93355896 Msa0388890:intron 40.0%
!!! TTTTACAAAGCTGGCTTGTG+AGG - chr3_1:93356038-93356057 Msa0388890:intron 40.0%
GGACGTTTCTCATTTCAATG+CGG - chr3_1:93356093-93356112 Msa0388890:intron 40.0%
GACGTTTCTCATTTCAATGC+GGG - chr3_1:93356094-93356113 Msa0388890:intron 40.0%
!! TTCTTGAGTGGATTGAAGTG+AGG + chr3_1:93356628-93356647 None:intergenic 40.0%
TCACTTCAATCCACTCAAGA+AGG - chr3_1:93356627-93356646 Msa0388890:intron 40.0%
AATCCACTCAAGAAGGATCA+TGG - chr3_1:93356634-93356653 Msa0388890:intron 40.0%
GATTTGGGTAACATTGTTGC+AGG - chr3_1:93356688-93356707 Msa0388890:intron 40.0%
CAATGTATTAGTTGTCCCCT+AGG - chr3_1:93356769-93356788 Msa0388890:CDS 40.0%
ACTCTCAAGGAGATTTCCTA+GGG + chr3_1:93356788-93356807 None:intergenic 40.0%
AACTCTCAAGGAGATTTCCT+AGG + chr3_1:93356789-93356808 None:intergenic 40.0%
! GAACAGAGAGTGTAATGAGA+TGG - chr3_1:93354931-93354950 Msa0388890:CDS 40.0%
! AGAGAGTGTAATGAGATGGA+AGG - chr3_1:93354935-93354954 Msa0388890:CDS 40.0%
TAATGAGATGGAAGGTGGAA+AGG - chr3_1:93354943-93354962 Msa0388890:intron 40.0%
AATGAGATGGAAGGTGGAAA+GGG - chr3_1:93354944-93354963 Msa0388890:intron 40.0%
ATCGGAGATAACAACGTTAG+AGG - chr3_1:93354992-93355011 Msa0388890:intron 40.0%
AGAGAGAGAAAGAACCATTG+GGG + chr3_1:93355039-93355058 None:intergenic 40.0%
GAGAGAGAGAAAGAACCATT+GGG + chr3_1:93355040-93355059 None:intergenic 40.0%
AGAGAGAGAGAAAGAACCAT+TGG + chr3_1:93355041-93355060 None:intergenic 40.0%
!! CCATTGCTTATGGTTTTGCA+AGG + chr3_1:93355256-93355275 None:intergenic 40.0%
CCTTGCAAAACCATAAGCAA+TGG - chr3_1:93355253-93355272 Msa0388890:intron 40.0%
TGCAAAACCATAAGCAATGG+AGG - chr3_1:93355256-93355275 Msa0388890:intron 40.0%
GCAAAACCATAAGCAATGGA+GGG - chr3_1:93355257-93355276 Msa0388890:intron 40.0%
!! TTGGTAGTGTTTGGCATAAG+GGG + chr3_1:93355354-93355373 None:intergenic 40.0%
! TGTTACTTGGTCTCACTCTT+TGG - chr3_1:93355433-93355452 Msa0388890:CDS 40.0%
!!! GTGGTCTTGACTTGGTATTT+TGG - chr3_1:93355617-93355636 Msa0388890:intron 40.0%
TTAGCCTGAAATTGCCATTG+GGG + chr3_1:93355677-93355696 None:intergenic 40.0%
AAAAAACAGCTTGTAAGGCG+AGG - chr3_1:93355714-93355733 Msa0388890:intron 40.0%
AAAAACAGCTTGTAAGGCGA+GGG - chr3_1:93355715-93355734 Msa0388890:intron 40.0%
TTTGGCAGTGTTTGACGTAA+GGG + chr3_1:93355815-93355834 None:intergenic 40.0%
ATTTGGCAGTGTTTGACGTA+AGG + chr3_1:93355816-93355835 None:intergenic 40.0%
!! ACATACCAAACCGACTTGTA+AGG - chr3_1:93355876-93355895 Msa0388890:intron 40.0%
!! CATACCAAACCGACTTGTAA+GGG - chr3_1:93355877-93355896 Msa0388890:intron 40.0%
!!! TTTTACAAAGCTGGCTTGTG+AGG - chr3_1:93356038-93356057 Msa0388890:intron 40.0%
GGACGTTTCTCATTTCAATG+CGG - chr3_1:93356093-93356112 Msa0388890:intron 40.0%
GACGTTTCTCATTTCAATGC+GGG - chr3_1:93356094-93356113 Msa0388890:intron 40.0%
!! TTCTTGAGTGGATTGAAGTG+AGG + chr3_1:93356628-93356647 None:intergenic 40.0%
TCACTTCAATCCACTCAAGA+AGG - chr3_1:93356627-93356646 Msa0388890:intron 40.0%
AATCCACTCAAGAAGGATCA+TGG - chr3_1:93356634-93356653 Msa0388890:intron 40.0%
GATTTGGGTAACATTGTTGC+AGG - chr3_1:93356688-93356707 Msa0388890:intron 40.0%
CAATGTATTAGTTGTCCCCT+AGG - chr3_1:93356769-93356788 Msa0388890:CDS 40.0%
ACTCTCAAGGAGATTTCCTA+GGG + chr3_1:93356788-93356807 None:intergenic 40.0%
AACTCTCAAGGAGATTTCCT+AGG + chr3_1:93356789-93356808 None:intergenic 40.0%
GAGTGTAATGAGATGGAAGG+TGG - chr3_1:93354938-93354957 Msa0388890:CDS 45.0%
AAAGGGAACAGTGAAAGGTG+TGG - chr3_1:93354961-93354980 Msa0388890:intron 45.0%
! AAAGGTGTGGCTCTCATCAT+CGG - chr3_1:93354974-93354993 Msa0388890:intron 45.0%
CACTTTGTTCAAGACCCCAA+TGG - chr3_1:93355022-93355041 Msa0388890:intron 45.0%
! TGGTAGTGTTTGGCATAAGG+GGG + chr3_1:93355353-93355372 None:intergenic 45.0%
!! TACCAAACCGGCTTGTTACT+TGG - chr3_1:93355420-93355439 Msa0388890:CDS 45.0%
AGTGAGACCAAGTAACAAGC+CGG + chr3_1:93355430-93355449 None:intergenic 45.0%
! AACCACTTCAATTAGCCTGG+TGG - chr3_1:93355598-93355617 Msa0388890:intron 45.0%
AATACCAAGTCAAGACCACC+AGG + chr3_1:93355616-93355635 None:intergenic 45.0%
TTCTCCCCAATGGCAATTTC+AGG - chr3_1:93355670-93355689 Msa0388890:intron 45.0%
TTGGCAGTGTTTGACGTAAG+GGG + chr3_1:93355814-93355833 None:intergenic 45.0%
AGTGACACTCCCTTACAAGT+CGG + chr3_1:93355889-93355908 None:intergenic 45.0%
CGGTAATGCTTGGCATAAGA+GGG + chr3_1:93356150-93356169 None:intergenic 45.0%
TCGGTAATGCTTGGCATAAG+AGG + chr3_1:93356151-93356170 None:intergenic 45.0%
AAGATAACAGGGTTGTCTCC+AGG - chr3_1:93356333-93356352 Msa0388890:intron 45.0%
GAAAAGTGGAAACCAACCAG+TGG + chr3_1:93356412-93356431 None:intergenic 45.0%
! GGCTTTGACTTCTTTACCTC+AGG - chr3_1:93356601-93356620 Msa0388890:intron 45.0%
CTCTCAAGGAGATTTCCTAG+GGG + chr3_1:93356787-93356806 None:intergenic 45.0%
GAGTGTAATGAGATGGAAGG+TGG - chr3_1:93354938-93354957 Msa0388890:CDS 45.0%
AAAGGGAACAGTGAAAGGTG+TGG - chr3_1:93354961-93354980 Msa0388890:intron 45.0%
! AAAGGTGTGGCTCTCATCAT+CGG - chr3_1:93354974-93354993 Msa0388890:intron 45.0%
CACTTTGTTCAAGACCCCAA+TGG - chr3_1:93355022-93355041 Msa0388890:intron 45.0%
! TGGTAGTGTTTGGCATAAGG+GGG + chr3_1:93355353-93355372 None:intergenic 45.0%
!! TACCAAACCGGCTTGTTACT+TGG - chr3_1:93355420-93355439 Msa0388890:CDS 45.0%
AGTGAGACCAAGTAACAAGC+CGG + chr3_1:93355430-93355449 None:intergenic 45.0%
! AACCACTTCAATTAGCCTGG+TGG - chr3_1:93355598-93355617 Msa0388890:intron 45.0%
AATACCAAGTCAAGACCACC+AGG + chr3_1:93355616-93355635 None:intergenic 45.0%
TTCTCCCCAATGGCAATTTC+AGG - chr3_1:93355670-93355689 Msa0388890:intron 45.0%
TTGGCAGTGTTTGACGTAAG+GGG + chr3_1:93355814-93355833 None:intergenic 45.0%
AGTGACACTCCCTTACAAGT+CGG + chr3_1:93355889-93355908 None:intergenic 45.0%
CGGTAATGCTTGGCATAAGA+GGG + chr3_1:93356150-93356169 None:intergenic 45.0%
TCGGTAATGCTTGGCATAAG+AGG + chr3_1:93356151-93356170 None:intergenic 45.0%
AAGATAACAGGGTTGTCTCC+AGG - chr3_1:93356333-93356352 Msa0388890:intron 45.0%
GAAAAGTGGAAACCAACCAG+TGG + chr3_1:93356412-93356431 None:intergenic 45.0%
! GGCTTTGACTTCTTTACCTC+AGG - chr3_1:93356601-93356620 Msa0388890:intron 45.0%
CTCTCAAGGAGATTTCCTAG+GGG + chr3_1:93356787-93356806 None:intergenic 45.0%
GGTGGAAAGGGAACAGTGAA+AGG - chr3_1:93354956-93354975 Msa0388890:intron 50.0%
GTGACACCCTCCATTGCTTA+TGG + chr3_1:93355266-93355285 None:intergenic 50.0%
GGTAGTGTTTGGCATAAGGG+GGG + chr3_1:93355352-93355371 None:intergenic 50.0%
GACCAAGTAACAAGCCGGTT+TGG + chr3_1:93355425-93355444 None:intergenic 50.0%
GACCACCAGGCTAATTGAAG+TGG + chr3_1:93355603-93355622 None:intergenic 50.0%
! TTAGCCTGGTGGTCTTGACT+TGG - chr3_1:93355609-93355628 Msa0388890:intron 50.0%
! TTTGGAGTGTTCTCCTCTCG+AGG - chr3_1:93355635-93355654 Msa0388890:intron 50.0%
TCAGGTTCGATTCTCCCCAA+TGG - chr3_1:93355660-93355679 Msa0388890:intron 50.0%
TGGCAGTGTTTGACGTAAGG+GGG + chr3_1:93355813-93355832 None:intergenic 50.0%
CACTCCCTTACAAGTCGGTT+TGG + chr3_1:93355884-93355903 None:intergenic 50.0%
TCAATACACCTCGTACGCCA+AGG - chr3_1:93355959-93355978 Msa0388890:intron 50.0%
CAATACACCTCGTACGCCAA+GGG - chr3_1:93355960-93355979 Msa0388890:intron 50.0%
!! AAAGCTGGCTTGTGAGGTGA+GGG - chr3_1:93356044-93356063 Msa0388890:intron 50.0%
! CACATGTGTGAGTGTCGTGT+TGG + chr3_1:93356493-93356512 None:intergenic 50.0%
TGGATTGAAGTGAGGACCTG+AGG + chr3_1:93356620-93356639 None:intergenic 50.0%
GCTCCATGATCCTTCTTGAG+TGG + chr3_1:93356640-93356659 None:intergenic 50.0%
AACATTGTTGCAGGCCCTGA+TGG - chr3_1:93356697-93356716 Msa0388890:intron 50.0%
GGTGGAAAGGGAACAGTGAA+AGG - chr3_1:93354956-93354975 Msa0388890:intron 50.0%
GTGACACCCTCCATTGCTTA+TGG + chr3_1:93355266-93355285 None:intergenic 50.0%
GGTAGTGTTTGGCATAAGGG+GGG + chr3_1:93355352-93355371 None:intergenic 50.0%
GACCAAGTAACAAGCCGGTT+TGG + chr3_1:93355425-93355444 None:intergenic 50.0%
GACCACCAGGCTAATTGAAG+TGG + chr3_1:93355603-93355622 None:intergenic 50.0%
! TTAGCCTGGTGGTCTTGACT+TGG - chr3_1:93355609-93355628 Msa0388890:intron 50.0%
! TTTGGAGTGTTCTCCTCTCG+AGG - chr3_1:93355635-93355654 Msa0388890:intron 50.0%
TCAGGTTCGATTCTCCCCAA+TGG - chr3_1:93355660-93355679 Msa0388890:intron 50.0%
TGGCAGTGTTTGACGTAAGG+GGG + chr3_1:93355813-93355832 None:intergenic 50.0%
CACTCCCTTACAAGTCGGTT+TGG + chr3_1:93355884-93355903 None:intergenic 50.0%
TCAATACACCTCGTACGCCA+AGG - chr3_1:93355959-93355978 Msa0388890:intron 50.0%
CAATACACCTCGTACGCCAA+GGG - chr3_1:93355960-93355979 Msa0388890:intron 50.0%
!! AAAGCTGGCTTGTGAGGTGA+GGG - chr3_1:93356044-93356063 Msa0388890:intron 50.0%
! CACATGTGTGAGTGTCGTGT+TGG + chr3_1:93356493-93356512 None:intergenic 50.0%
TGGATTGAAGTGAGGACCTG+AGG + chr3_1:93356620-93356639 None:intergenic 50.0%
GCTCCATGATCCTTCTTGAG+TGG + chr3_1:93356640-93356659 None:intergenic 50.0%
AACATTGTTGCAGGCCCTGA+TGG - chr3_1:93356697-93356716 Msa0388890:intron 50.0%
TGTTCTCCTCTCGAGGTCTC+AGG - chr3_1:93355642-93355661 Msa0388890:intron 55.0%
ATCGAACCTGAGACCTCGAG+AGG + chr3_1:93355651-93355670 None:intergenic 55.0%
!! CAAAGCTGGCTTGTGAGGTG+AGG - chr3_1:93356043-93356062 Msa0388890:intron 55.0%
GGGTTGTCTCCAGGTCTTCA+TGG - chr3_1:93356342-93356361 Msa0388890:intron 55.0%
! GCTCTTGGTGACACCACCAA+TGG - chr3_1:93356378-93356397 Msa0388890:intron 55.0%
AGTGGAGTTGCAGCCATTGG+TGG + chr3_1:93356394-93356413 None:intergenic 55.0%
ACCAATGGCTGCAACTCCAC+TGG - chr3_1:93356393-93356412 Msa0388890:intron 55.0%
ACCAGTGGAGTTGCAGCCAT+TGG + chr3_1:93356397-93356416 None:intergenic 55.0%
ATGGCTGCAACTCCACTGGT+TGG - chr3_1:93356397-93356416 Msa0388890:intron 55.0%
GCATGTCGCTCATCATCGGT+CGG + chr3_1:93356664-93356683 None:intergenic 55.0%
ACCGATGATGAGCGACATGC+CGG - chr3_1:93356664-93356683 Msa0388890:intron 55.0%
ACCGGCATGTCGCTCATCAT+CGG + chr3_1:93356668-93356687 None:intergenic 55.0%
TGAGCGACATGCCGGTGATT+TGG - chr3_1:93356672-93356691 Msa0388890:intron 55.0%
GAGCGACATGCCGGTGATTT+GGG - chr3_1:93356673-93356692 Msa0388890:intron 55.0%
TGTTCTCCTCTCGAGGTCTC+AGG - chr3_1:93355642-93355661 Msa0388890:intron 55.0%
ATCGAACCTGAGACCTCGAG+AGG + chr3_1:93355651-93355670 None:intergenic 55.0%
!! CAAAGCTGGCTTGTGAGGTG+AGG - chr3_1:93356043-93356062 Msa0388890:intron 55.0%
GGGTTGTCTCCAGGTCTTCA+TGG - chr3_1:93356342-93356361 Msa0388890:intron 55.0%
! GCTCTTGGTGACACCACCAA+TGG - chr3_1:93356378-93356397 Msa0388890:intron 55.0%
AGTGGAGTTGCAGCCATTGG+TGG + chr3_1:93356394-93356413 None:intergenic 55.0%
ACCAATGGCTGCAACTCCAC+TGG - chr3_1:93356393-93356412 Msa0388890:intron 55.0%
ACCAGTGGAGTTGCAGCCAT+TGG + chr3_1:93356397-93356416 None:intergenic 55.0%
ATGGCTGCAACTCCACTGGT+TGG - chr3_1:93356397-93356416 Msa0388890:intron 55.0%
GCATGTCGCTCATCATCGGT+CGG + chr3_1:93356664-93356683 None:intergenic 55.0%
ACCGATGATGAGCGACATGC+CGG - chr3_1:93356664-93356683 Msa0388890:intron 55.0%
ACCGGCATGTCGCTCATCAT+CGG + chr3_1:93356668-93356687 None:intergenic 55.0%
TGAGCGACATGCCGGTGATT+TGG - chr3_1:93356672-93356691 Msa0388890:intron 55.0%
GAGCGACATGCCGGTGATTT+GGG - chr3_1:93356673-93356692 Msa0388890:intron 55.0%
TCAGTAGCCCTTGGCGTACG+AGG + chr3_1:93355970-93355989 None:intergenic 60.0%
TCAGTAGCCCTTGGCGTACG+AGG + chr3_1:93355970-93355989 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 93354915 93356865 93354915 ID=Msa0388890;Name=Msa0388890
chr3_1 mRNA 93354915 93356865 93354915 ID=Msa0388890-mRNA-1;Parent=Msa0388890;Name=Msa0388890-mRNA-1;_AED=0.34;_eAED=0.34;_QI=35|1|0.75|1|1|1|4|0|112
chr3_1 exon 93354915 93354958 93354915 ID=Msa0388890-mRNA-1:exon:26426;Parent=Msa0388890-mRNA-1
chr3_1 exon 93355062 93355157 93355062 ID=Msa0388890-mRNA-1:exon:26425;Parent=Msa0388890-mRNA-1
chr3_1 exon 93355366 93355470 93355366 ID=Msa0388890-mRNA-1:exon:26424;Parent=Msa0388890-mRNA-1
chr3_1 exon 93356737 93356865 93356737 ID=Msa0388890-mRNA-1:exon:26423;Parent=Msa0388890-mRNA-1
chr3_1 five_prime_UTR 93356831 93356865 93356831 ID=Msa0388890-mRNA-1:five_prime_utr;Parent=Msa0388890-mRNA-1
chr3_1 CDS 93356737 93356830 93356737 ID=Msa0388890-mRNA-1:cds;Parent=Msa0388890-mRNA-1
chr3_1 CDS 93355366 93355470 93355366 ID=Msa0388890-mRNA-1:cds;Parent=Msa0388890-mRNA-1
chr3_1 CDS 93355062 93355157 93355062 ID=Msa0388890-mRNA-1:cds;Parent=Msa0388890-mRNA-1
chr3_1 CDS 93354915 93354958 93354915 ID=Msa0388890-mRNA-1:cds;Parent=Msa0388890-mRNA-1
Gene Sequence

>Msa0388890

ATGGAAGGTGGAAAGGGAACAGTGAAAGGTGTGGCTCTCATCATCGGAGATAACAACGTTAGAGGTTCTCTTCACTTTGTTCAAGACCCCAATGGGAATTATACACATGTAACTGGAAAGATAACAGGGTTGTCTCCAGGTCTTCATGGATTTCATATTCATGCTCTTGGTGACACCACCAATGGCTGCAACTCCACTGGTCCTCACTTCAATCCACTCAAGAAGGATCATGGAGCTCCGACCGATGATGAGCGACATGCCGGTGATTTGGGTAACATTGTTGCAGGCCCTGATGGAGTTGCTGAGATTTCTGTCAGAGATGAAAAGGTAAAGAATTGA

Protein sequence

>Msa0388890

MEGGKGTVKGVALIIGDNNVRGSLHFVQDPNGNYTHVTGKITGLSPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPTDDERHAGDLGNIVAGPDGVAEISVRDEKVKN*