Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388890 | XP_003618947.1 | 95.455 | 110 | 5 | 0 | 1 | 110 | 1 | 110 | 6.68e-69 | 214 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388890 | sp|O49044|SODC2_MESCR | 77.143 | 105 | 23 | 1 | 6 | 110 | 2 | 105 | 6.47e-54 | 168 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388890 | G7KPK8 | 95.455 | 110 | 5 | 0 | 1 | 110 | 1 | 110 | 3.19e-69 | 214 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0103780 | Msa0388890 | 0.800756 | 1.241587e-48 | -8.615850e-47 |
Msa0150210 | Msa0388890 | 0.806739 | 7.104906e-50 | -8.615850e-47 |
Msa0175900 | Msa0388890 | 0.808717 | 2.699421e-50 | -8.615850e-47 |
Msa0388880 | Msa0388890 | 0.878374 | 2.958394e-69 | -8.615850e-47 |
Msa0388890 | Msa0619060 | 0.801095 | 1.058566e-48 | -8.615850e-47 |
Msa0388890 | Msa0705610 | 0.803462 | 3.445507e-49 | -8.615850e-47 |
Msa0388890 | Msa0910650 | 0.819801 | 9.597215e-53 | -8.615850e-47 |
Msa0388890 | Msa0959970 | 0.812019 | 5.232894e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388890 | MtrunA17_Chr6g0461291 | 95.455 | 110 | 5 | 0 | 1 | 110 | 1 | 110 | 6.15e-73 | 214 |
Msa0388890 | MtrunA17_Chr7g0273571 | 60.194 | 103 | 40 | 1 | 8 | 110 | 2 | 103 | 3.76e-38 | 125 |
Msa0388890 | MtrunA17_Chr4g0028001 | 56.842 | 95 | 40 | 1 | 16 | 110 | 63 | 156 | 5.58e-31 | 108 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0388890 | AT5G18100.2 | 68.182 | 110 | 34 | 1 | 1 | 110 | 1 | 109 | 1.07e-49 | 154 |
Msa0388890 | AT5G18100.1 | 68.182 | 110 | 34 | 1 | 1 | 110 | 1 | 109 | 1.16e-49 | 155 |
Msa0388890 | AT1G08830.2 | 57.282 | 103 | 43 | 1 | 8 | 110 | 2 | 103 | 2.39e-35 | 119 |
Msa0388890 | AT1G08830.1 | 57.282 | 103 | 43 | 1 | 8 | 110 | 2 | 103 | 2.39e-35 | 119 |
Msa0388890 | AT2G28190.1 | 56.863 | 102 | 43 | 1 | 9 | 110 | 66 | 166 | 3.10e-32 | 112 |
Find 36 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATGTAACTGGAAAGATAAC+AGG | 0.310063 | 3_1:-93355437 | Msa0388890:CDS |
GGGAATTATACACATGTAAC+TGG | 0.341579 | 3_1:-93355449 | Msa0388890:CDS |
GATTTGGGTAACATTGTTGC+AGG | 0.348387 | 3_1:-93355070 | Msa0388890:CDS |
GGGTTGTCTCCAGGTCTTCA+TGG | 0.372926 | 3_1:-93355416 | Msa0388890:CDS |
GAGCGACATGCCGGTGATTT+GGG | 0.381125 | 3_1:-93355085 | Msa0388890:CDS |
TGAGCGACATGCCGGTGATT+TGG | 0.389627 | 3_1:-93355086 | Msa0388890:CDS |
GGATTTCATATTCATGCTCT+TGG | 0.401989 | 3_1:-93355395 | Msa0388890:CDS |
ATCGGAGATAACAACGTTAG+AGG | 0.441505 | 3_1:-93356766 | Msa0388890:CDS |
ACCAATGGCTGCAACTCCAC+TGG | 0.499697 | 3_1:-93355365 | Msa0388890:intron |
AATCCACTCAAGAAGGATCA+TGG | 0.509101 | 3_1:-93355124 | Msa0388890:CDS |
ACCAGTGGAGTTGCAGCCAT+TGG | 0.511673 | 3_1:+93355364 | None:intergenic |
GATTTCTGTCAGAGATGAAA+AGG | 0.518213 | 3_1:-93354926 | Msa0388890:CDS |
AACATTGTTGCAGGCCCTGA+TGG | 0.520070 | 3_1:-93355061 | Msa0388890:intron |
AAGATAACAGGGTTGTCTCC+AGG | 0.523191 | 3_1:-93355425 | Msa0388890:CDS |
TAATGAGATGGAAGGTGGAA+AGG | 0.524799 | 3_1:-93356815 | Msa0388890:exon |
AATGAGATGGAAGGTGGAAA+GGG | 0.525384 | 3_1:-93356814 | Msa0388890:exon |
GAGTGTAATGAGATGGAAGG+TGG | 0.525509 | 3_1:-93356820 | Msa0388890:exon |
GGTGGAAAGGGAACAGTGAA+AGG | 0.528789 | 3_1:-93356802 | Msa0388890:CDS |
GAACAGAGAGTGTAATGAGA+TGG | 0.532099 | 3_1:-93356827 | Msa0388890:exon |
ACCGGCATGTCGCTCATCAT+CGG | 0.536041 | 3_1:+93355093 | None:intergenic |
CACTTTGTTCAAGACCCCAA+TGG | 0.540843 | 3_1:-93356736 | Msa0388890:intron |
GCTCCATGATCCTTCTTGAG+TGG | 0.545993 | 3_1:+93355121 | None:intergenic |
AAAGGTGTGGCTCTCATCAT+CGG | 0.560465 | 3_1:-93356784 | Msa0388890:CDS |
TCACTTCAATCCACTCAAGA+AGG | 0.563861 | 3_1:-93355131 | Msa0388890:CDS |
AACAATGTTACCCAAATCAC+CGG | 0.572762 | 3_1:+93355075 | None:intergenic |
AGTGGAGTTGCAGCCATTGG+TGG | 0.573666 | 3_1:+93355367 | None:intergenic |
ACCGATGATGAGCGACATGC+CGG | 0.578862 | 3_1:-93355094 | Msa0388890:CDS |
GCTCTTGGTGACACCACCAA+TGG | 0.586374 | 3_1:-93355380 | Msa0388890:CDS |
AGAGAGTGTAATGAGATGGA+AGG | 0.601142 | 3_1:-93356823 | Msa0388890:exon |
ATATGAAATCCATGAAGACC+TGG | 0.612117 | 3_1:+93355407 | None:intergenic |
TTCTTGAGTGGATTGAAGTG+AGG | 0.612233 | 3_1:+93355133 | None:intergenic |
GCATGTCGCTCATCATCGGT+CGG | 0.638547 | 3_1:+93355097 | None:intergenic |
GAAAGATGGTAATACCATCA+GGG | 0.655512 | 3_1:+93355047 | None:intergenic |
ATGTAACTGGAAAGATAACA+GGG | 0.689780 | 3_1:-93355436 | Msa0388890:CDS |
AAAGGGAACAGTGAAAGGTG+TGG | 0.714226 | 3_1:-93356797 | Msa0388890:CDS |
AGAGAGAGAAAGAACCATTG+GGG | 0.717171 | 3_1:+93356722 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGATATTTATTTTCAATGT+GGG | - | chr3_1:93355306-93355325 | Msa0388890:intron | 15.0% |
!! | TATCATATTAGATAAATATC+AGG | - | chr3_1:93355546-93355565 | Msa0388890:intron | 15.0% |
!!! | CTATGTTATGATTTTATATT+AGG | - | chr3_1:93356178-93356197 | Msa0388890:intron | 15.0% |
!!! | ATGATATTTATTTTCAATGT+GGG | - | chr3_1:93355306-93355325 | Msa0388890:intron | 15.0% |
!! | TATCATATTAGATAAATATC+AGG | - | chr3_1:93355546-93355565 | Msa0388890:intron | 15.0% |
!!! | CTATGTTATGATTTTATATT+AGG | - | chr3_1:93356178-93356197 | Msa0388890:intron | 15.0% |
!! | TATATTTCATGTTTCATAAG+AGG | + | chr3_1:93355088-93355107 | None:intergenic | 20.0% |
!!! | GATGATATTTATTTTCAATG+TGG | - | chr3_1:93355305-93355324 | Msa0388890:intron | 20.0% |
!! | AAAAAAAAAAACAGCTTGTA+AGG | - | chr3_1:93355709-93355728 | Msa0388890:intron | 20.0% |
!! | CAATTCATAGTTTATCTATT+TGG | + | chr3_1:93355833-93355852 | None:intergenic | 20.0% |
!! | CAAATAGATAAACTATGAAT+TGG | - | chr3_1:93355831-93355850 | Msa0388890:intron | 20.0% |
!!! | CTATGAATTGGTTTTTATAT+TGG | - | chr3_1:93355843-93355862 | Msa0388890:intron | 20.0% |
!!! | TCTTATTATTTTTACAAAGC+TGG | - | chr3_1:93356029-93356048 | Msa0388890:intron | 20.0% |
!! | ATCATAACATAGTATCTATT+CGG | + | chr3_1:93356170-93356189 | None:intergenic | 20.0% |
!! | ATATTGAATAATGAGAAAAG+TGG | + | chr3_1:93356426-93356445 | None:intergenic | 20.0% |
!! | ATAAAAAAGAAGAAGAAAGA+TGG | + | chr3_1:93356728-93356747 | None:intergenic | 20.0% |
!! | TATATTTCATGTTTCATAAG+AGG | + | chr3_1:93355088-93355107 | None:intergenic | 20.0% |
!!! | GATGATATTTATTTTCAATG+TGG | - | chr3_1:93355305-93355324 | Msa0388890:intron | 20.0% |
!! | AAAAAAAAAAACAGCTTGTA+AGG | - | chr3_1:93355709-93355728 | Msa0388890:intron | 20.0% |
!! | CAATTCATAGTTTATCTATT+TGG | + | chr3_1:93355833-93355852 | None:intergenic | 20.0% |
!! | CAAATAGATAAACTATGAAT+TGG | - | chr3_1:93355831-93355850 | Msa0388890:intron | 20.0% |
!!! | CTATGAATTGGTTTTTATAT+TGG | - | chr3_1:93355843-93355862 | Msa0388890:intron | 20.0% |
!!! | TCTTATTATTTTTACAAAGC+TGG | - | chr3_1:93356029-93356048 | Msa0388890:intron | 20.0% |
!! | ATCATAACATAGTATCTATT+CGG | + | chr3_1:93356170-93356189 | None:intergenic | 20.0% |
!! | ATATTGAATAATGAGAAAAG+TGG | + | chr3_1:93356426-93356445 | None:intergenic | 20.0% |
!! | ATAAAAAAGAAGAAGAAAGA+TGG | + | chr3_1:93356728-93356747 | None:intergenic | 20.0% |
! | ATAATTCATTCTTACCAAAC+CGG | - | chr3_1:93355408-93355427 | Msa0388890:CDS | 25.0% |
!!! | TTTCAGGTTTTATTTCTCTT+TGG | - | chr3_1:93356239-93356258 | Msa0388890:intron | 25.0% |
! | ATGTATTCAATGTAAAGCAT+CGG | + | chr3_1:93356469-93356488 | None:intergenic | 25.0% |
!! | CACTTTCCTTTTCAAATATT+CGG | + | chr3_1:93356528-93356547 | None:intergenic | 25.0% |
!! | AAGTGTTTCAATGCAAATTT+TGG | - | chr3_1:93356580-93356599 | Msa0388890:intron | 25.0% |
! | ATAATTCATTCTTACCAAAC+CGG | - | chr3_1:93355408-93355427 | Msa0388890:CDS | 25.0% |
!!! | TTTCAGGTTTTATTTCTCTT+TGG | - | chr3_1:93356239-93356258 | Msa0388890:intron | 25.0% |
! | ATGTATTCAATGTAAAGCAT+CGG | + | chr3_1:93356469-93356488 | None:intergenic | 25.0% |
!! | CACTTTCCTTTTCAAATATT+CGG | + | chr3_1:93356528-93356547 | None:intergenic | 25.0% |
!! | AAGTGTTTCAATGCAAATTT+TGG | - | chr3_1:93356580-93356599 | Msa0388890:intron | 25.0% |
! | TTATTTTCAATGTGGGACTT+TGG | - | chr3_1:93355313-93355332 | Msa0388890:intron | 30.0% |
!! | TCTATCTATTTGGTAGTGTT+TGG | + | chr3_1:93355363-93355382 | None:intergenic | 30.0% |
CAATTCACAGTCTATCTATT+TGG | + | chr3_1:93355373-93355392 | None:intergenic | 30.0% | |
CAAATAGATAGACTGTGAAT+TGG | - | chr3_1:93355371-93355390 | Msa0388890:CDS | 30.0% | |
TCTATGTATTCGGTAATGTT+TGG | + | chr3_1:93355520-93355539 | None:intergenic | 30.0% | |
GATATCAGAGTCTATGTATT+CGG | + | chr3_1:93355530-93355549 | None:intergenic | 30.0% | |
GTTTATACGCTGAATATGTA+AGG | + | chr3_1:93355581-93355600 | None:intergenic | 30.0% | |
CATTGAAAAAAGATATCGTC+TGG | + | chr3_1:93355765-93355784 | None:intergenic | 30.0% | |
!!! | CTTTTTTCAATGTGTGACTT+CGG | - | chr3_1:93355773-93355792 | Msa0388890:intron | 30.0% |
CAGAAATAGTTTACAAAGAG+TGG | + | chr3_1:93356074-93356093 | None:intergenic | 30.0% | |
CACTCTTTGTAAACTATTTC+TGG | - | chr3_1:93356072-93356091 | Msa0388890:intron | 30.0% | |
TGAAAAGAGTTAACACAAAC+TGG | + | chr3_1:93356224-93356243 | None:intergenic | 30.0% | |
! | AGTTTGTGTTAACTCTTTTC+AGG | - | chr3_1:93356223-93356242 | Msa0388890:intron | 30.0% |
ATGTAACTGGAAAGATAACA+GGG | - | chr3_1:93356322-93356341 | Msa0388890:intron | 30.0% | |
TGAGAACCGAATATTTGAAA+AGG | - | chr3_1:93356519-93356538 | Msa0388890:intron | 30.0% | |
! | TTATTTTCAATGTGGGACTT+TGG | - | chr3_1:93355313-93355332 | Msa0388890:intron | 30.0% |
!! | TCTATCTATTTGGTAGTGTT+TGG | + | chr3_1:93355363-93355382 | None:intergenic | 30.0% |
CAATTCACAGTCTATCTATT+TGG | + | chr3_1:93355373-93355392 | None:intergenic | 30.0% | |
CAAATAGATAGACTGTGAAT+TGG | - | chr3_1:93355371-93355390 | Msa0388890:CDS | 30.0% | |
TCTATGTATTCGGTAATGTT+TGG | + | chr3_1:93355520-93355539 | None:intergenic | 30.0% | |
GATATCAGAGTCTATGTATT+CGG | + | chr3_1:93355530-93355549 | None:intergenic | 30.0% | |
GTTTATACGCTGAATATGTA+AGG | + | chr3_1:93355581-93355600 | None:intergenic | 30.0% | |
CATTGAAAAAAGATATCGTC+TGG | + | chr3_1:93355765-93355784 | None:intergenic | 30.0% | |
!!! | CTTTTTTCAATGTGTGACTT+CGG | - | chr3_1:93355773-93355792 | Msa0388890:intron | 30.0% |
CAGAAATAGTTTACAAAGAG+TGG | + | chr3_1:93356074-93356093 | None:intergenic | 30.0% | |
CACTCTTTGTAAACTATTTC+TGG | - | chr3_1:93356072-93356091 | Msa0388890:intron | 30.0% | |
TGAAAAGAGTTAACACAAAC+TGG | + | chr3_1:93356224-93356243 | None:intergenic | 30.0% | |
! | AGTTTGTGTTAACTCTTTTC+AGG | - | chr3_1:93356223-93356242 | Msa0388890:intron | 30.0% |
ATGTAACTGGAAAGATAACA+GGG | - | chr3_1:93356322-93356341 | Msa0388890:intron | 30.0% | |
TGAGAACCGAATATTTGAAA+AGG | - | chr3_1:93356519-93356538 | Msa0388890:intron | 30.0% | |
!! | TTTGGTAGTGTTTGGCATAA+GGG | + | chr3_1:93355355-93355374 | None:intergenic | 35.0% |
!! | ATTTGGTAGTGTTTGGCATA+AGG | + | chr3_1:93355356-93355375 | None:intergenic | 35.0% |
TCGGTAATGTTTGGCATAAA+GGG | + | chr3_1:93355511-93355530 | None:intergenic | 35.0% | |
TTCGGTAATGTTTGGCATAA+AGG | + | chr3_1:93355512-93355531 | None:intergenic | 35.0% | |
ATAAACCACTTCAATTAGCC+TGG | - | chr3_1:93355595-93355614 | Msa0388890:intron | 35.0% | |
! | ATTAGCCTGAAATTGCCATT+GGG | + | chr3_1:93355678-93355697 | None:intergenic | 35.0% |
! | AATTAGCCTGAAATTGCCAT+TGG | + | chr3_1:93355679-93355698 | None:intergenic | 35.0% |
!! | CGGTTTGGTATGTATGAATT+AGG | + | chr3_1:93355869-93355888 | None:intergenic | 35.0% |
TTTATATGTTCAGTAGCCCT+TGG | + | chr3_1:93355979-93355998 | None:intergenic | 35.0% | |
AGTATCTATTCGGTAATGCT+TGG | + | chr3_1:93356160-93356179 | None:intergenic | 35.0% | |
AACTATGATTGTGATTGTGC+AGG | - | chr3_1:93356288-93356307 | Msa0388890:intron | 35.0% | |
ACTATGATTGTGATTGTGCA+GGG | - | chr3_1:93356289-93356308 | Msa0388890:intron | 35.0% | |
GGGAATTATACACATGTAAC+TGG | - | chr3_1:93356309-93356328 | Msa0388890:intron | 35.0% | |
CATGTAACTGGAAAGATAAC+AGG | - | chr3_1:93356321-93356340 | Msa0388890:intron | 35.0% | |
ATATGAAATCCATGAAGACC+TGG | + | chr3_1:93356354-93356373 | None:intergenic | 35.0% | |
GGATTTCATATTCATGCTCT+TGG | - | chr3_1:93356363-93356382 | Msa0388890:intron | 35.0% | |
AACAATGTTACCCAAATCAC+CGG | + | chr3_1:93356686-93356705 | None:intergenic | 35.0% | |
GAAAGATGGTAATACCATCA+GGG | + | chr3_1:93356714-93356733 | None:intergenic | 35.0% | |
AGAAAGATGGTAATACCATC+AGG | + | chr3_1:93356715-93356734 | None:intergenic | 35.0% | |
TGCAAAACAGAAAACTCTCA+AGG | + | chr3_1:93356801-93356820 | None:intergenic | 35.0% | |
! | TTGAGAGTTTTCTGTTTTGC+AGG | - | chr3_1:93356800-93356819 | Msa0388890:CDS | 35.0% |
GATTTCTGTCAGAGATGAAA+AGG | - | chr3_1:93356832-93356851 | Msa0388890:five_prime_UTR | 35.0% | |
!! | TTTGGTAGTGTTTGGCATAA+GGG | + | chr3_1:93355355-93355374 | None:intergenic | 35.0% |
!! | ATTTGGTAGTGTTTGGCATA+AGG | + | chr3_1:93355356-93355375 | None:intergenic | 35.0% |
TCGGTAATGTTTGGCATAAA+GGG | + | chr3_1:93355511-93355530 | None:intergenic | 35.0% | |
TTCGGTAATGTTTGGCATAA+AGG | + | chr3_1:93355512-93355531 | None:intergenic | 35.0% | |
ATAAACCACTTCAATTAGCC+TGG | - | chr3_1:93355595-93355614 | Msa0388890:intron | 35.0% | |
! | ATTAGCCTGAAATTGCCATT+GGG | + | chr3_1:93355678-93355697 | None:intergenic | 35.0% |
! | AATTAGCCTGAAATTGCCAT+TGG | + | chr3_1:93355679-93355698 | None:intergenic | 35.0% |
!! | CGGTTTGGTATGTATGAATT+AGG | + | chr3_1:93355869-93355888 | None:intergenic | 35.0% |
TTTATATGTTCAGTAGCCCT+TGG | + | chr3_1:93355979-93355998 | None:intergenic | 35.0% | |
AGTATCTATTCGGTAATGCT+TGG | + | chr3_1:93356160-93356179 | None:intergenic | 35.0% | |
AACTATGATTGTGATTGTGC+AGG | - | chr3_1:93356288-93356307 | Msa0388890:intron | 35.0% | |
ACTATGATTGTGATTGTGCA+GGG | - | chr3_1:93356289-93356308 | Msa0388890:intron | 35.0% | |
GGGAATTATACACATGTAAC+TGG | - | chr3_1:93356309-93356328 | Msa0388890:intron | 35.0% | |
CATGTAACTGGAAAGATAAC+AGG | - | chr3_1:93356321-93356340 | Msa0388890:intron | 35.0% | |
ATATGAAATCCATGAAGACC+TGG | + | chr3_1:93356354-93356373 | None:intergenic | 35.0% | |
GGATTTCATATTCATGCTCT+TGG | - | chr3_1:93356363-93356382 | Msa0388890:intron | 35.0% | |
AACAATGTTACCCAAATCAC+CGG | + | chr3_1:93356686-93356705 | None:intergenic | 35.0% | |
GAAAGATGGTAATACCATCA+GGG | + | chr3_1:93356714-93356733 | None:intergenic | 35.0% | |
AGAAAGATGGTAATACCATC+AGG | + | chr3_1:93356715-93356734 | None:intergenic | 35.0% | |
TGCAAAACAGAAAACTCTCA+AGG | + | chr3_1:93356801-93356820 | None:intergenic | 35.0% | |
! | TTGAGAGTTTTCTGTTTTGC+AGG | - | chr3_1:93356800-93356819 | Msa0388890:CDS | 35.0% |
GATTTCTGTCAGAGATGAAA+AGG | - | chr3_1:93356832-93356851 | Msa0388890:five_prime_UTR | 35.0% | |
! | GAACAGAGAGTGTAATGAGA+TGG | - | chr3_1:93354931-93354950 | Msa0388890:CDS | 40.0% |
! | AGAGAGTGTAATGAGATGGA+AGG | - | chr3_1:93354935-93354954 | Msa0388890:CDS | 40.0% |
TAATGAGATGGAAGGTGGAA+AGG | - | chr3_1:93354943-93354962 | Msa0388890:intron | 40.0% | |
AATGAGATGGAAGGTGGAAA+GGG | - | chr3_1:93354944-93354963 | Msa0388890:intron | 40.0% | |
ATCGGAGATAACAACGTTAG+AGG | - | chr3_1:93354992-93355011 | Msa0388890:intron | 40.0% | |
AGAGAGAGAAAGAACCATTG+GGG | + | chr3_1:93355039-93355058 | None:intergenic | 40.0% | |
GAGAGAGAGAAAGAACCATT+GGG | + | chr3_1:93355040-93355059 | None:intergenic | 40.0% | |
AGAGAGAGAGAAAGAACCAT+TGG | + | chr3_1:93355041-93355060 | None:intergenic | 40.0% | |
!! | CCATTGCTTATGGTTTTGCA+AGG | + | chr3_1:93355256-93355275 | None:intergenic | 40.0% |
CCTTGCAAAACCATAAGCAA+TGG | - | chr3_1:93355253-93355272 | Msa0388890:intron | 40.0% | |
TGCAAAACCATAAGCAATGG+AGG | - | chr3_1:93355256-93355275 | Msa0388890:intron | 40.0% | |
GCAAAACCATAAGCAATGGA+GGG | - | chr3_1:93355257-93355276 | Msa0388890:intron | 40.0% | |
!! | TTGGTAGTGTTTGGCATAAG+GGG | + | chr3_1:93355354-93355373 | None:intergenic | 40.0% |
! | TGTTACTTGGTCTCACTCTT+TGG | - | chr3_1:93355433-93355452 | Msa0388890:CDS | 40.0% |
!!! | GTGGTCTTGACTTGGTATTT+TGG | - | chr3_1:93355617-93355636 | Msa0388890:intron | 40.0% |
TTAGCCTGAAATTGCCATTG+GGG | + | chr3_1:93355677-93355696 | None:intergenic | 40.0% | |
AAAAAACAGCTTGTAAGGCG+AGG | - | chr3_1:93355714-93355733 | Msa0388890:intron | 40.0% | |
AAAAACAGCTTGTAAGGCGA+GGG | - | chr3_1:93355715-93355734 | Msa0388890:intron | 40.0% | |
TTTGGCAGTGTTTGACGTAA+GGG | + | chr3_1:93355815-93355834 | None:intergenic | 40.0% | |
ATTTGGCAGTGTTTGACGTA+AGG | + | chr3_1:93355816-93355835 | None:intergenic | 40.0% | |
!! | ACATACCAAACCGACTTGTA+AGG | - | chr3_1:93355876-93355895 | Msa0388890:intron | 40.0% |
!! | CATACCAAACCGACTTGTAA+GGG | - | chr3_1:93355877-93355896 | Msa0388890:intron | 40.0% |
!!! | TTTTACAAAGCTGGCTTGTG+AGG | - | chr3_1:93356038-93356057 | Msa0388890:intron | 40.0% |
GGACGTTTCTCATTTCAATG+CGG | - | chr3_1:93356093-93356112 | Msa0388890:intron | 40.0% | |
GACGTTTCTCATTTCAATGC+GGG | - | chr3_1:93356094-93356113 | Msa0388890:intron | 40.0% | |
!! | TTCTTGAGTGGATTGAAGTG+AGG | + | chr3_1:93356628-93356647 | None:intergenic | 40.0% |
TCACTTCAATCCACTCAAGA+AGG | - | chr3_1:93356627-93356646 | Msa0388890:intron | 40.0% | |
AATCCACTCAAGAAGGATCA+TGG | - | chr3_1:93356634-93356653 | Msa0388890:intron | 40.0% | |
GATTTGGGTAACATTGTTGC+AGG | - | chr3_1:93356688-93356707 | Msa0388890:intron | 40.0% | |
CAATGTATTAGTTGTCCCCT+AGG | - | chr3_1:93356769-93356788 | Msa0388890:CDS | 40.0% | |
ACTCTCAAGGAGATTTCCTA+GGG | + | chr3_1:93356788-93356807 | None:intergenic | 40.0% | |
AACTCTCAAGGAGATTTCCT+AGG | + | chr3_1:93356789-93356808 | None:intergenic | 40.0% | |
! | GAACAGAGAGTGTAATGAGA+TGG | - | chr3_1:93354931-93354950 | Msa0388890:CDS | 40.0% |
! | AGAGAGTGTAATGAGATGGA+AGG | - | chr3_1:93354935-93354954 | Msa0388890:CDS | 40.0% |
TAATGAGATGGAAGGTGGAA+AGG | - | chr3_1:93354943-93354962 | Msa0388890:intron | 40.0% | |
AATGAGATGGAAGGTGGAAA+GGG | - | chr3_1:93354944-93354963 | Msa0388890:intron | 40.0% | |
ATCGGAGATAACAACGTTAG+AGG | - | chr3_1:93354992-93355011 | Msa0388890:intron | 40.0% | |
AGAGAGAGAAAGAACCATTG+GGG | + | chr3_1:93355039-93355058 | None:intergenic | 40.0% | |
GAGAGAGAGAAAGAACCATT+GGG | + | chr3_1:93355040-93355059 | None:intergenic | 40.0% | |
AGAGAGAGAGAAAGAACCAT+TGG | + | chr3_1:93355041-93355060 | None:intergenic | 40.0% | |
!! | CCATTGCTTATGGTTTTGCA+AGG | + | chr3_1:93355256-93355275 | None:intergenic | 40.0% |
CCTTGCAAAACCATAAGCAA+TGG | - | chr3_1:93355253-93355272 | Msa0388890:intron | 40.0% | |
TGCAAAACCATAAGCAATGG+AGG | - | chr3_1:93355256-93355275 | Msa0388890:intron | 40.0% | |
GCAAAACCATAAGCAATGGA+GGG | - | chr3_1:93355257-93355276 | Msa0388890:intron | 40.0% | |
!! | TTGGTAGTGTTTGGCATAAG+GGG | + | chr3_1:93355354-93355373 | None:intergenic | 40.0% |
! | TGTTACTTGGTCTCACTCTT+TGG | - | chr3_1:93355433-93355452 | Msa0388890:CDS | 40.0% |
!!! | GTGGTCTTGACTTGGTATTT+TGG | - | chr3_1:93355617-93355636 | Msa0388890:intron | 40.0% |
TTAGCCTGAAATTGCCATTG+GGG | + | chr3_1:93355677-93355696 | None:intergenic | 40.0% | |
AAAAAACAGCTTGTAAGGCG+AGG | - | chr3_1:93355714-93355733 | Msa0388890:intron | 40.0% | |
AAAAACAGCTTGTAAGGCGA+GGG | - | chr3_1:93355715-93355734 | Msa0388890:intron | 40.0% | |
TTTGGCAGTGTTTGACGTAA+GGG | + | chr3_1:93355815-93355834 | None:intergenic | 40.0% | |
ATTTGGCAGTGTTTGACGTA+AGG | + | chr3_1:93355816-93355835 | None:intergenic | 40.0% | |
!! | ACATACCAAACCGACTTGTA+AGG | - | chr3_1:93355876-93355895 | Msa0388890:intron | 40.0% |
!! | CATACCAAACCGACTTGTAA+GGG | - | chr3_1:93355877-93355896 | Msa0388890:intron | 40.0% |
!!! | TTTTACAAAGCTGGCTTGTG+AGG | - | chr3_1:93356038-93356057 | Msa0388890:intron | 40.0% |
GGACGTTTCTCATTTCAATG+CGG | - | chr3_1:93356093-93356112 | Msa0388890:intron | 40.0% | |
GACGTTTCTCATTTCAATGC+GGG | - | chr3_1:93356094-93356113 | Msa0388890:intron | 40.0% | |
!! | TTCTTGAGTGGATTGAAGTG+AGG | + | chr3_1:93356628-93356647 | None:intergenic | 40.0% |
TCACTTCAATCCACTCAAGA+AGG | - | chr3_1:93356627-93356646 | Msa0388890:intron | 40.0% | |
AATCCACTCAAGAAGGATCA+TGG | - | chr3_1:93356634-93356653 | Msa0388890:intron | 40.0% | |
GATTTGGGTAACATTGTTGC+AGG | - | chr3_1:93356688-93356707 | Msa0388890:intron | 40.0% | |
CAATGTATTAGTTGTCCCCT+AGG | - | chr3_1:93356769-93356788 | Msa0388890:CDS | 40.0% | |
ACTCTCAAGGAGATTTCCTA+GGG | + | chr3_1:93356788-93356807 | None:intergenic | 40.0% | |
AACTCTCAAGGAGATTTCCT+AGG | + | chr3_1:93356789-93356808 | None:intergenic | 40.0% | |
GAGTGTAATGAGATGGAAGG+TGG | - | chr3_1:93354938-93354957 | Msa0388890:CDS | 45.0% | |
AAAGGGAACAGTGAAAGGTG+TGG | - | chr3_1:93354961-93354980 | Msa0388890:intron | 45.0% | |
! | AAAGGTGTGGCTCTCATCAT+CGG | - | chr3_1:93354974-93354993 | Msa0388890:intron | 45.0% |
CACTTTGTTCAAGACCCCAA+TGG | - | chr3_1:93355022-93355041 | Msa0388890:intron | 45.0% | |
! | TGGTAGTGTTTGGCATAAGG+GGG | + | chr3_1:93355353-93355372 | None:intergenic | 45.0% |
!! | TACCAAACCGGCTTGTTACT+TGG | - | chr3_1:93355420-93355439 | Msa0388890:CDS | 45.0% |
AGTGAGACCAAGTAACAAGC+CGG | + | chr3_1:93355430-93355449 | None:intergenic | 45.0% | |
! | AACCACTTCAATTAGCCTGG+TGG | - | chr3_1:93355598-93355617 | Msa0388890:intron | 45.0% |
AATACCAAGTCAAGACCACC+AGG | + | chr3_1:93355616-93355635 | None:intergenic | 45.0% | |
TTCTCCCCAATGGCAATTTC+AGG | - | chr3_1:93355670-93355689 | Msa0388890:intron | 45.0% | |
TTGGCAGTGTTTGACGTAAG+GGG | + | chr3_1:93355814-93355833 | None:intergenic | 45.0% | |
AGTGACACTCCCTTACAAGT+CGG | + | chr3_1:93355889-93355908 | None:intergenic | 45.0% | |
CGGTAATGCTTGGCATAAGA+GGG | + | chr3_1:93356150-93356169 | None:intergenic | 45.0% | |
TCGGTAATGCTTGGCATAAG+AGG | + | chr3_1:93356151-93356170 | None:intergenic | 45.0% | |
AAGATAACAGGGTTGTCTCC+AGG | - | chr3_1:93356333-93356352 | Msa0388890:intron | 45.0% | |
GAAAAGTGGAAACCAACCAG+TGG | + | chr3_1:93356412-93356431 | None:intergenic | 45.0% | |
! | GGCTTTGACTTCTTTACCTC+AGG | - | chr3_1:93356601-93356620 | Msa0388890:intron | 45.0% |
CTCTCAAGGAGATTTCCTAG+GGG | + | chr3_1:93356787-93356806 | None:intergenic | 45.0% | |
GAGTGTAATGAGATGGAAGG+TGG | - | chr3_1:93354938-93354957 | Msa0388890:CDS | 45.0% | |
AAAGGGAACAGTGAAAGGTG+TGG | - | chr3_1:93354961-93354980 | Msa0388890:intron | 45.0% | |
! | AAAGGTGTGGCTCTCATCAT+CGG | - | chr3_1:93354974-93354993 | Msa0388890:intron | 45.0% |
CACTTTGTTCAAGACCCCAA+TGG | - | chr3_1:93355022-93355041 | Msa0388890:intron | 45.0% | |
! | TGGTAGTGTTTGGCATAAGG+GGG | + | chr3_1:93355353-93355372 | None:intergenic | 45.0% |
!! | TACCAAACCGGCTTGTTACT+TGG | - | chr3_1:93355420-93355439 | Msa0388890:CDS | 45.0% |
AGTGAGACCAAGTAACAAGC+CGG | + | chr3_1:93355430-93355449 | None:intergenic | 45.0% | |
! | AACCACTTCAATTAGCCTGG+TGG | - | chr3_1:93355598-93355617 | Msa0388890:intron | 45.0% |
AATACCAAGTCAAGACCACC+AGG | + | chr3_1:93355616-93355635 | None:intergenic | 45.0% | |
TTCTCCCCAATGGCAATTTC+AGG | - | chr3_1:93355670-93355689 | Msa0388890:intron | 45.0% | |
TTGGCAGTGTTTGACGTAAG+GGG | + | chr3_1:93355814-93355833 | None:intergenic | 45.0% | |
AGTGACACTCCCTTACAAGT+CGG | + | chr3_1:93355889-93355908 | None:intergenic | 45.0% | |
CGGTAATGCTTGGCATAAGA+GGG | + | chr3_1:93356150-93356169 | None:intergenic | 45.0% | |
TCGGTAATGCTTGGCATAAG+AGG | + | chr3_1:93356151-93356170 | None:intergenic | 45.0% | |
AAGATAACAGGGTTGTCTCC+AGG | - | chr3_1:93356333-93356352 | Msa0388890:intron | 45.0% | |
GAAAAGTGGAAACCAACCAG+TGG | + | chr3_1:93356412-93356431 | None:intergenic | 45.0% | |
! | GGCTTTGACTTCTTTACCTC+AGG | - | chr3_1:93356601-93356620 | Msa0388890:intron | 45.0% |
CTCTCAAGGAGATTTCCTAG+GGG | + | chr3_1:93356787-93356806 | None:intergenic | 45.0% | |
GGTGGAAAGGGAACAGTGAA+AGG | - | chr3_1:93354956-93354975 | Msa0388890:intron | 50.0% | |
GTGACACCCTCCATTGCTTA+TGG | + | chr3_1:93355266-93355285 | None:intergenic | 50.0% | |
GGTAGTGTTTGGCATAAGGG+GGG | + | chr3_1:93355352-93355371 | None:intergenic | 50.0% | |
GACCAAGTAACAAGCCGGTT+TGG | + | chr3_1:93355425-93355444 | None:intergenic | 50.0% | |
GACCACCAGGCTAATTGAAG+TGG | + | chr3_1:93355603-93355622 | None:intergenic | 50.0% | |
! | TTAGCCTGGTGGTCTTGACT+TGG | - | chr3_1:93355609-93355628 | Msa0388890:intron | 50.0% |
! | TTTGGAGTGTTCTCCTCTCG+AGG | - | chr3_1:93355635-93355654 | Msa0388890:intron | 50.0% |
TCAGGTTCGATTCTCCCCAA+TGG | - | chr3_1:93355660-93355679 | Msa0388890:intron | 50.0% | |
TGGCAGTGTTTGACGTAAGG+GGG | + | chr3_1:93355813-93355832 | None:intergenic | 50.0% | |
CACTCCCTTACAAGTCGGTT+TGG | + | chr3_1:93355884-93355903 | None:intergenic | 50.0% | |
TCAATACACCTCGTACGCCA+AGG | - | chr3_1:93355959-93355978 | Msa0388890:intron | 50.0% | |
CAATACACCTCGTACGCCAA+GGG | - | chr3_1:93355960-93355979 | Msa0388890:intron | 50.0% | |
!! | AAAGCTGGCTTGTGAGGTGA+GGG | - | chr3_1:93356044-93356063 | Msa0388890:intron | 50.0% |
! | CACATGTGTGAGTGTCGTGT+TGG | + | chr3_1:93356493-93356512 | None:intergenic | 50.0% |
TGGATTGAAGTGAGGACCTG+AGG | + | chr3_1:93356620-93356639 | None:intergenic | 50.0% | |
GCTCCATGATCCTTCTTGAG+TGG | + | chr3_1:93356640-93356659 | None:intergenic | 50.0% | |
AACATTGTTGCAGGCCCTGA+TGG | - | chr3_1:93356697-93356716 | Msa0388890:intron | 50.0% | |
GGTGGAAAGGGAACAGTGAA+AGG | - | chr3_1:93354956-93354975 | Msa0388890:intron | 50.0% | |
GTGACACCCTCCATTGCTTA+TGG | + | chr3_1:93355266-93355285 | None:intergenic | 50.0% | |
GGTAGTGTTTGGCATAAGGG+GGG | + | chr3_1:93355352-93355371 | None:intergenic | 50.0% | |
GACCAAGTAACAAGCCGGTT+TGG | + | chr3_1:93355425-93355444 | None:intergenic | 50.0% | |
GACCACCAGGCTAATTGAAG+TGG | + | chr3_1:93355603-93355622 | None:intergenic | 50.0% | |
! | TTAGCCTGGTGGTCTTGACT+TGG | - | chr3_1:93355609-93355628 | Msa0388890:intron | 50.0% |
! | TTTGGAGTGTTCTCCTCTCG+AGG | - | chr3_1:93355635-93355654 | Msa0388890:intron | 50.0% |
TCAGGTTCGATTCTCCCCAA+TGG | - | chr3_1:93355660-93355679 | Msa0388890:intron | 50.0% | |
TGGCAGTGTTTGACGTAAGG+GGG | + | chr3_1:93355813-93355832 | None:intergenic | 50.0% | |
CACTCCCTTACAAGTCGGTT+TGG | + | chr3_1:93355884-93355903 | None:intergenic | 50.0% | |
TCAATACACCTCGTACGCCA+AGG | - | chr3_1:93355959-93355978 | Msa0388890:intron | 50.0% | |
CAATACACCTCGTACGCCAA+GGG | - | chr3_1:93355960-93355979 | Msa0388890:intron | 50.0% | |
!! | AAAGCTGGCTTGTGAGGTGA+GGG | - | chr3_1:93356044-93356063 | Msa0388890:intron | 50.0% |
! | CACATGTGTGAGTGTCGTGT+TGG | + | chr3_1:93356493-93356512 | None:intergenic | 50.0% |
TGGATTGAAGTGAGGACCTG+AGG | + | chr3_1:93356620-93356639 | None:intergenic | 50.0% | |
GCTCCATGATCCTTCTTGAG+TGG | + | chr3_1:93356640-93356659 | None:intergenic | 50.0% | |
AACATTGTTGCAGGCCCTGA+TGG | - | chr3_1:93356697-93356716 | Msa0388890:intron | 50.0% | |
TGTTCTCCTCTCGAGGTCTC+AGG | - | chr3_1:93355642-93355661 | Msa0388890:intron | 55.0% | |
ATCGAACCTGAGACCTCGAG+AGG | + | chr3_1:93355651-93355670 | None:intergenic | 55.0% | |
!! | CAAAGCTGGCTTGTGAGGTG+AGG | - | chr3_1:93356043-93356062 | Msa0388890:intron | 55.0% |
GGGTTGTCTCCAGGTCTTCA+TGG | - | chr3_1:93356342-93356361 | Msa0388890:intron | 55.0% | |
! | GCTCTTGGTGACACCACCAA+TGG | - | chr3_1:93356378-93356397 | Msa0388890:intron | 55.0% |
AGTGGAGTTGCAGCCATTGG+TGG | + | chr3_1:93356394-93356413 | None:intergenic | 55.0% | |
ACCAATGGCTGCAACTCCAC+TGG | - | chr3_1:93356393-93356412 | Msa0388890:intron | 55.0% | |
ACCAGTGGAGTTGCAGCCAT+TGG | + | chr3_1:93356397-93356416 | None:intergenic | 55.0% | |
ATGGCTGCAACTCCACTGGT+TGG | - | chr3_1:93356397-93356416 | Msa0388890:intron | 55.0% | |
GCATGTCGCTCATCATCGGT+CGG | + | chr3_1:93356664-93356683 | None:intergenic | 55.0% | |
ACCGATGATGAGCGACATGC+CGG | - | chr3_1:93356664-93356683 | Msa0388890:intron | 55.0% | |
ACCGGCATGTCGCTCATCAT+CGG | + | chr3_1:93356668-93356687 | None:intergenic | 55.0% | |
TGAGCGACATGCCGGTGATT+TGG | - | chr3_1:93356672-93356691 | Msa0388890:intron | 55.0% | |
GAGCGACATGCCGGTGATTT+GGG | - | chr3_1:93356673-93356692 | Msa0388890:intron | 55.0% | |
TGTTCTCCTCTCGAGGTCTC+AGG | - | chr3_1:93355642-93355661 | Msa0388890:intron | 55.0% | |
ATCGAACCTGAGACCTCGAG+AGG | + | chr3_1:93355651-93355670 | None:intergenic | 55.0% | |
!! | CAAAGCTGGCTTGTGAGGTG+AGG | - | chr3_1:93356043-93356062 | Msa0388890:intron | 55.0% |
GGGTTGTCTCCAGGTCTTCA+TGG | - | chr3_1:93356342-93356361 | Msa0388890:intron | 55.0% | |
! | GCTCTTGGTGACACCACCAA+TGG | - | chr3_1:93356378-93356397 | Msa0388890:intron | 55.0% |
AGTGGAGTTGCAGCCATTGG+TGG | + | chr3_1:93356394-93356413 | None:intergenic | 55.0% | |
ACCAATGGCTGCAACTCCAC+TGG | - | chr3_1:93356393-93356412 | Msa0388890:intron | 55.0% | |
ACCAGTGGAGTTGCAGCCAT+TGG | + | chr3_1:93356397-93356416 | None:intergenic | 55.0% | |
ATGGCTGCAACTCCACTGGT+TGG | - | chr3_1:93356397-93356416 | Msa0388890:intron | 55.0% | |
GCATGTCGCTCATCATCGGT+CGG | + | chr3_1:93356664-93356683 | None:intergenic | 55.0% | |
ACCGATGATGAGCGACATGC+CGG | - | chr3_1:93356664-93356683 | Msa0388890:intron | 55.0% | |
ACCGGCATGTCGCTCATCAT+CGG | + | chr3_1:93356668-93356687 | None:intergenic | 55.0% | |
TGAGCGACATGCCGGTGATT+TGG | - | chr3_1:93356672-93356691 | Msa0388890:intron | 55.0% | |
GAGCGACATGCCGGTGATTT+GGG | - | chr3_1:93356673-93356692 | Msa0388890:intron | 55.0% | |
TCAGTAGCCCTTGGCGTACG+AGG | + | chr3_1:93355970-93355989 | None:intergenic | 60.0% | |
TCAGTAGCCCTTGGCGTACG+AGG | + | chr3_1:93355970-93355989 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 93354915 | 93356865 | 93354915 | ID=Msa0388890;Name=Msa0388890 |
chr3_1 | mRNA | 93354915 | 93356865 | 93354915 | ID=Msa0388890-mRNA-1;Parent=Msa0388890;Name=Msa0388890-mRNA-1;_AED=0.34;_eAED=0.34;_QI=35|1|0.75|1|1|1|4|0|112 |
chr3_1 | exon | 93354915 | 93354958 | 93354915 | ID=Msa0388890-mRNA-1:exon:26426;Parent=Msa0388890-mRNA-1 |
chr3_1 | exon | 93355062 | 93355157 | 93355062 | ID=Msa0388890-mRNA-1:exon:26425;Parent=Msa0388890-mRNA-1 |
chr3_1 | exon | 93355366 | 93355470 | 93355366 | ID=Msa0388890-mRNA-1:exon:26424;Parent=Msa0388890-mRNA-1 |
chr3_1 | exon | 93356737 | 93356865 | 93356737 | ID=Msa0388890-mRNA-1:exon:26423;Parent=Msa0388890-mRNA-1 |
chr3_1 | five_prime_UTR | 93356831 | 93356865 | 93356831 | ID=Msa0388890-mRNA-1:five_prime_utr;Parent=Msa0388890-mRNA-1 |
chr3_1 | CDS | 93356737 | 93356830 | 93356737 | ID=Msa0388890-mRNA-1:cds;Parent=Msa0388890-mRNA-1 |
chr3_1 | CDS | 93355366 | 93355470 | 93355366 | ID=Msa0388890-mRNA-1:cds;Parent=Msa0388890-mRNA-1 |
chr3_1 | CDS | 93355062 | 93355157 | 93355062 | ID=Msa0388890-mRNA-1:cds;Parent=Msa0388890-mRNA-1 |
chr3_1 | CDS | 93354915 | 93354958 | 93354915 | ID=Msa0388890-mRNA-1:cds;Parent=Msa0388890-mRNA-1 |
Gene Sequence |
Protein sequence |