AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0705610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705610 MtrunA17_Chr8g0383751 95.367 259 9 1 1 259 10 265 0.0 499
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705610 AT5G09820.2 54.902 255 99 2 12 254 21 271 2.39e-90 268
Msa0705610 AT5G09820.1 54.506 233 90 2 12 232 21 249 3.82e-78 237
Msa0705610 AT5G09820.3 51.042 192 78 2 12 191 21 208 6.98e-54 174
Msa0705610 AT4G22240.1 30.568 229 115 7 61 250 77 300 8.85e-17 78.6
Msa0705610 AT4G04020.1 28.378 222 110 6 70 250 95 308 1.65e-15 75.1
Msa0705610 AT3G26070.1 30.348 201 96 8 64 254 69 235 2.15e-14 71.2

Find 83 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGCACTATCTCTATTT+TGG 0.111980 4_4:+78399067 Msa0705610:CDS
TATTCTGTATTTGATCTTAA+AGG 0.149815 4_4:+78398303 Msa0705610:five_prime_UTR
AAAAGGGTGTCTCAAAATTT+TGG 0.199940 4_4:-78398217 None:intergenic
AGTAGGAGATTTAACTGTTT+TGG 0.236034 4_4:-78399910 None:intergenic
GAAGTTAGAAATTGAAAGTT+TGG 0.249564 4_4:+78398738 Msa0705610:CDS
GGAATCAACAGAGGGATATT+TGG 0.264142 4_4:+78398700 Msa0705610:intron
ATCATGAAACTTCAAAGATT+TGG 0.272932 4_4:+78398395 Msa0705610:CDS
TGGATAAACACTTCAAGATT+TGG 0.298180 4_4:+78398437 Msa0705610:CDS
TCTAGTTCTAGAGTTGGTTC+TGG 0.326515 4_4:-78398790 None:intergenic
TTGAAGTTTCATGATATTCA+TGG 0.326931 4_4:-78398387 None:intergenic
CACAGTTGATGAACCTGTTT+CGG 0.340714 4_4:+78400152 Msa0705610:intron
TGTTGGCCATGATTCATTCT+AGG 0.344158 4_4:+78400631 Msa0705610:three_prime_UTR
GATTTGGTGAGAAGCCATTA+TGG 0.349218 4_4:+78398453 Msa0705610:CDS
CAAATACAGAATAATGAAAC+AGG 0.355653 4_4:-78398293 None:intergenic
AAAGTTGCAGAACAATCTTC+TGG 0.358341 4_4:+78398497 Msa0705610:CDS
CCAATGCAATAAAGTCTCTT+AGG 0.361573 4_4:-78399112 None:intergenic
GACCACCTAGTAATCTTTCA+TGG 0.363929 4_4:+78398417 Msa0705610:CDS
CTAAGAGACTTTATTGCATT+GGG 0.375979 4_4:+78399113 Msa0705610:CDS
GCAACTTTAATGATAGTAAT+GGG 0.377037 4_4:-78398482 None:intergenic
TCTAGAGTTGGTTCTGGAGT+TGG 0.385057 4_4:-78398784 None:intergenic
GGATCAAGAAGGACAAAGTT+AGG 0.406396 4_4:+78399089 Msa0705610:CDS
GTGATCAAGTTCAATGCAAA+AGG 0.408117 4_4:+78399834 Msa0705610:CDS
CCTAAGAGACTTTATTGCAT+TGG 0.415989 4_4:+78399112 Msa0705610:CDS
CGAAGTTTGTTTCGACATAG+TGG 0.440289 4_4:+78400555 Msa0705610:three_prime_UTR
TCTTTGTAATATACCTGATC+AGG 0.443928 4_4:-78400044 None:intergenic
GGAAGGTGGATGGGTGTTGG+AGG 0.446955 4_4:+78399039 Msa0705610:intron
TTCCACAATCACTCCTGATC+AGG 0.448356 4_4:+78400031 Msa0705610:CDS
TGCAACTTTAATGATAGTAA+TGG 0.449400 4_4:-78398483 None:intergenic
AAGAGAGCTTTACCAGGCTC+TGG 0.452031 4_4:+78398559 Msa0705610:CDS
TGATTCTCATGTGAGTCCTC+TGG 0.455246 4_4:+78398355 Msa0705610:CDS
GTAATGGGTCTAAACCATAA+TGG 0.465210 4_4:-78398467 None:intergenic
CAAAGGCAATATCTTTGTGT+TGG 0.468289 4_4:+78400406 Msa0705610:CDS
GGGGTTGTGTCGAGCGGAAG+GGG 0.469291 4_4:-78400586 None:intergenic
GGGATATTTGGAATTCCATC+TGG 0.474487 4_4:+78398712 Msa0705610:CDS
GTTGATGACAACATGAGAAT+AGG 0.478063 4_4:+78400374 Msa0705610:CDS
TTTATCCATGAAAGATTACT+AGG 0.478881 4_4:-78398422 None:intergenic
ACATGAGAATCATTCATTGA+TGG 0.480197 4_4:-78398344 None:intergenic
ACTGGAAGGTGGATGGGTGT+TGG 0.486174 4_4:+78399036 Msa0705610:intron
GCAGAACAATCTTCTGGCTA+TGG 0.491323 4_4:+78398503 Msa0705610:CDS
ACCTTCTCTAGTTCTAGAGT+TGG 0.492031 4_4:-78398796 None:intergenic
GACAAAATTACTTTCCGTGA+AGG 0.498911 4_4:-78400485 None:intergenic
TTCTATTACTGGAAGGTGGA+TGG 0.515531 4_4:+78399029 Msa0705610:intron
ATTTCTAACTTCTTGCCAGA+TGG 0.516677 4_4:-78398727 None:intergenic
AGATGCTACCTTCCAGAGCC+TGG 0.516686 4_4:-78398571 None:intergenic
GTAACTTGTATCCATTGTGT+TGG 0.522077 4_4:+78400614 Msa0705610:intron
TTTGGAAGCAATCTTGAATG+AGG 0.522835 4_4:-78399892 None:intergenic
TCTATTACTGGAAGGTGGAT+GGG 0.533432 4_4:+78399030 Msa0705610:intron
GAATAATGAAACAGGGTAGA+GGG 0.538460 4_4:-78398285 None:intergenic
AGAATAATGAAACAGGGTAG+AGG 0.550244 4_4:-78398286 None:intergenic
GTGTGGAGAGCTTAGTATTG+AGG 0.553989 4_4:+78399869 Msa0705610:CDS
ATACTTCCTAGAATGAATCA+TGG 0.557877 4_4:-78400637 None:intergenic
GTGATTTCTAGCCATCCCTC+TGG 0.559113 4_4:-78400208 None:intergenic
TCGAAACAAACTTCGAATCC+CGG 0.559452 4_4:-78400547 None:intergenic
TGGGGTTGTGTCGAGCGGAA+GGG 0.564105 4_4:-78400587 None:intergenic
GAAGTTTGTTTCGACATAGT+GGG 0.564277 4_4:+78400556 Msa0705610:three_prime_UTR
TACCTGATCAGGAGTGATTG+TGG 0.569292 4_4:-78400033 None:intergenic
TTGGGCATCTTCAATCCAGA+GGG 0.577853 4_4:+78400193 Msa0705610:CDS
ACCAACTCTAGAACTAGAGA+AGG 0.579053 4_4:+78398795 Msa0705610:CDS
GAGCTTTACCAGGCTCTGGA+AGG 0.579893 4_4:+78398563 Msa0705610:CDS
TGATCAAGTTCAATGCAAAA+GGG 0.581171 4_4:+78399835 Msa0705610:CDS
ATGACAACATGAGAATAGGA+AGG 0.590421 4_4:+78400378 Msa0705610:CDS
ATGAATCATGGCCAACACAA+TGG 0.591223 4_4:-78400625 None:intergenic
GACATCTATGCAACAGTAGT+CGG 0.597837 4_4:-78400703 None:intergenic
TGAAACAGGGTAGAGGGTCA+TGG 0.600960 4_4:-78398279 None:intergenic
GAAGAAAAGAGAGCTTTACC+AGG 0.603570 4_4:+78398553 Msa0705610:CDS
TTAGTTGAAGATGAAGCACT+TGG 0.610602 4_4:+78398527 Msa0705610:CDS
TCAGACTATTGATAAAGCCA+AGG 0.616602 4_4:+78399145 Msa0705610:CDS
GTTGGGCATCTTCAATCCAG+AGG 0.618538 4_4:+78400192 Msa0705610:CDS
TGACAACATGAGAATAGGAA+GGG 0.637950 4_4:+78400379 Msa0705610:CDS
CTTTCCGTGAAGGAAACATG+TGG 0.639124 4_4:-78400475 None:intergenic
GCATCTTCAATCCAGAGGGA+TGG 0.641660 4_4:+78400197 Msa0705610:CDS
GATAGGTCTATCGAGACATG+TGG 0.649263 4_4:-78398133 None:intergenic
TGTTTGAAGGAATCAACAGA+GGG 0.669440 4_4:+78398692 Msa0705610:intron
ACTTGAAAGAACAACGTGCG+AGG 0.669525 4_4:+78398248 Msa0705610:five_prime_UTR
AGAATAGGAAGGGATGACAA+AGG 0.678331 4_4:+78400389 Msa0705610:CDS
CTAACATGTACATAGTTCCA+CGG 0.686297 4_4:+78398191 Msa0705610:five_prime_UTR
AAAGGGTTGATATTGTTGTG+TGG 0.686655 4_4:+78399852 Msa0705610:CDS
GTGTTTGAAGGAATCAACAG+AGG 0.697719 4_4:+78398691 Msa0705610:intron
TTCATGGTTCTACAAACCAG+AGG 0.699055 4_4:-78398371 None:intergenic
ATCCATGAAAGATTACTAGG+TGG 0.706915 4_4:-78398419 None:intergenic
AACAGGGTAGAGGGTCATGG+TGG 0.709521 4_4:-78398276 None:intergenic
AAATACAGAATAATGAAACA+GGG 0.717835 4_4:-78398292 None:intergenic
TTTGAAAATGAAGAGCAAAG+CGG 0.731147 4_4:+78399806 Msa0705610:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTATGATATTTTGTT+GGG + chr4_4:78400175-78400194 Msa0705610:CDS 10.0%
!!! TATTTGATTTTTTCTAATCA+AGG - chr4_4:78398164-78398183 None:intergenic 15.0%
!! GTTTAAAAAAATTGTGATTT+AGG - chr4_4:78398967-78398986 None:intergenic 15.0%
!! ACAAAATCTACATTAAATTA+TGG - chr4_4:78399522-78399541 None:intergenic 15.0%
!! TATTGAGTTTAATTAAACAT+TGG + chr4_4:78399775-78399794 Msa0705610:intron 15.0%
!! AAGTTAAATAAGTAGTTATT+TGG - chr4_4:78399971-78399990 None:intergenic 15.0%
!! AGGAAAAATTAATTAAACAT+AGG - chr4_4:78400123-78400142 None:intergenic 15.0%
!!! GAAAAATTATGATATTTTGT+TGG + chr4_4:78400174-78400193 Msa0705610:CDS 15.0%
!!! ATTTTTTCTAATCAAGGTTT+TGG - chr4_4:78398158-78398177 None:intergenic 20.0%
!!! TTTCAAGTTTTCTGATAAAA+GGG - chr4_4:78398236-78398255 None:intergenic 20.0%
!! AAATACAGAATAATGAAACA+GGG - chr4_4:78398295-78398314 None:intergenic 20.0%
!! TATTCTGTATTTGATCTTAA+AGG + chr4_4:78398303-78398322 Msa0705610:five_prime_UTR 20.0%
!!! AAAGAGTAATTTGTTTGAAA+TGG + chr4_4:78398658-78398677 Msa0705610:intron 20.0%
!!! AAGAGTAATTTGTTTGAAAT+GGG + chr4_4:78398659-78398678 Msa0705610:intron 20.0%
!!! TCAATTGTTTTACAAATTAG+AGG + chr4_4:78399434-78399453 Msa0705610:intron 20.0%
!!! CAATTGTTTTACAAATTAGA+GGG + chr4_4:78399435-78399454 Msa0705610:intron 20.0%
!!! TCTCTATTTTTTTTCTTCTT+GGG + chr4_4:78400750-78400769 Msa0705610:three_prime_UTR 20.0%
!!! CTTTCAAGTTTTCTGATAAA+AGG - chr4_4:78398237-78398256 None:intergenic 25.0%
! CAAATACAGAATAATGAAAC+AGG - chr4_4:78398296-78398315 None:intergenic 25.0%
! TTGAAGTTTCATGATATTCA+TGG - chr4_4:78398390-78398409 None:intergenic 25.0%
! ATCATGAAACTTCAAAGATT+TGG + chr4_4:78398395-78398414 Msa0705610:CDS 25.0%
! TTTATCCATGAAAGATTACT+AGG - chr4_4:78398425-78398444 None:intergenic 25.0%
! GCAACTTTAATGATAGTAAT+GGG - chr4_4:78398485-78398504 None:intergenic 25.0%
! TGCAACTTTAATGATAGTAA+TGG - chr4_4:78398486-78398505 None:intergenic 25.0%
! GAAGTTAGAAATTGAAAGTT+TGG + chr4_4:78398738-78398757 Msa0705610:CDS 25.0%
!!! CAATGTTTTTTATGTCTTTG+CGG - chr4_4:78398935-78398954 None:intergenic 25.0%
! CATAAAAAACATTGATATCG+AGG + chr4_4:78398941-78398960 Msa0705610:intron 25.0%
!! TCATGTTATGTTTCTATTAC+TGG + chr4_4:78399018-78399037 Msa0705610:intron 25.0%
!! TTATAGCACTATCTCTATTT+TGG + chr4_4:78399067-78399086 Msa0705610:CDS 25.0%
!! TATAGCACTATCTCTATTTT+GGG + chr4_4:78399068-78399087 Msa0705610:CDS 25.0%
! TCTCTAAGTCAAAAGAAAAA+GGG - chr4_4:78399211-78399230 None:intergenic 25.0%
! ATCTCTAAGTCAAAAGAAAA+AGG - chr4_4:78399212-78399231 None:intergenic 25.0%
! AAAAATACGAACTTTGTGAT+TGG - chr4_4:78399288-78399307 None:intergenic 25.0%
!! AATTATGGACCATATGATTT+TGG - chr4_4:78399507-78399526 None:intergenic 25.0%
! AAAATACTAAGCTTGAAATC+TGG + chr4_4:78399559-78399578 Msa0705610:intron 25.0%
!!! ACTTTCTACGATAGTTTTTT+CGG - chr4_4:78399621-78399640 None:intergenic 25.0%
! AATAGACGAGATTATTATGT+TGG - chr4_4:78399746-78399765 None:intergenic 25.0%
!! TATCATAATTTTTCCGAAAC+AGG - chr4_4:78400168-78400187 None:intergenic 25.0%
! AAAACCAATCAACGAAAATT+AGG - chr4_4:78400238-78400257 None:intergenic 25.0%
! ATGTGGAAAACAAAAAAGAA+CGG - chr4_4:78400461-78400480 None:intergenic 25.0%
!! AAAGTAATTTTGTCGAAACA+TGG + chr4_4:78400494-78400513 Msa0705610:three_prime_UTR 25.0%
!!! GTCTCTATTTTTTTTCTTCT+TGG + chr4_4:78400749-78400768 Msa0705610:three_prime_UTR 25.0%
!!! TTCTAATCAAGGTTTTGGAT+AGG - chr4_4:78398153-78398172 None:intergenic 30.0%
!!! AAAAGGGTGTCTCAAAATTT+TGG - chr4_4:78398220-78398239 None:intergenic 30.0%
ACATGAGAATCATTCATTGA+TGG - chr4_4:78398347-78398366 None:intergenic 30.0%
TGGATAAACACTTCAAGATT+TGG + chr4_4:78398437-78398456 Msa0705610:CDS 30.0%
TTGTGAGCTATTGTTAAAAC+TGG + chr4_4:78398623-78398642 Msa0705610:intron 30.0%
GTTAAAACTGGTTAACAAAG+TGG + chr4_4:78398635-78398654 Msa0705610:intron 30.0%
! GTTATGTTTCTATTACTGGA+AGG + chr4_4:78399022-78399041 Msa0705610:intron 30.0%
CTAAGAGACTTTATTGCATT+GGG + chr4_4:78399113-78399132 Msa0705610:CDS 30.0%
CTAGAAATTAAGAGCAAACA+CGG - chr4_4:78399336-78399355 None:intergenic 30.0%
! GTTTTACAAATTAGAGGGTT+TGG + chr4_4:78399440-78399459 Msa0705610:intron 30.0%
!!! AGTTTTTTCGGTTCTAATTC+TGG - chr4_4:78399609-78399628 None:intergenic 30.0%
TATCGTAGAAAGTGAACTAT+AGG + chr4_4:78399628-78399647 Msa0705610:intron 30.0%
GACTCAAACTTTAACAATGT+AGG - chr4_4:78399663-78399682 None:intergenic 30.0%
TTTGAAAATGAAGAGCAAAG+CGG + chr4_4:78399806-78399825 Msa0705610:intron 30.0%
TGATCAAGTTCAATGCAAAA+GGG + chr4_4:78399835-78399854 Msa0705610:CDS 30.0%
! AGTAGGAGATTTAACTGTTT+TGG - chr4_4:78399913-78399932 None:intergenic 30.0%
TAAATCTCCTACTCTTTGTT+TGG + chr4_4:78399920-78399939 Msa0705610:intron 30.0%
TTCTACTTCAAATTCACAGA+GGG + chr4_4:78399989-78400008 Msa0705610:intron 30.0%
TCTTTGTAATATACCTGATC+AGG - chr4_4:78400047-78400066 None:intergenic 30.0%
! GTACATTTCCTTTTTGTTCT+TGG + chr4_4:78400072-78400091 Msa0705610:intron 30.0%
! TTGATTAGCCAAGAACAAAA+AGG - chr4_4:78400083-78400102 None:intergenic 30.0%
! GTATCCTAATTTTCGTTGAT+TGG + chr4_4:78400231-78400250 Msa0705610:intron 30.0%
ATACTTCCTAGAATGAATCA+TGG - chr4_4:78400640-78400659 None:intergenic 30.0%
CTAACATGTACATAGTTCCA+CGG + chr4_4:78398191-78398210 Msa0705610:five_prime_UTR 35.0%
GAATAATGAAACAGGGTAGA+GGG - chr4_4:78398288-78398307 None:intergenic 35.0%
AGAATAATGAAACAGGGTAG+AGG - chr4_4:78398289-78398308 None:intergenic 35.0%
ATCCATGAAAGATTACTAGG+TGG - chr4_4:78398422-78398441 None:intergenic 35.0%
!! GTAATGGGTCTAAACCATAA+TGG - chr4_4:78398470-78398489 None:intergenic 35.0%
AAAGTTGCAGAACAATCTTC+TGG + chr4_4:78398497-78398516 Msa0705610:CDS 35.0%
! TTAGTTGAAGATGAAGCACT+TGG + chr4_4:78398527-78398546 Msa0705610:CDS 35.0%
GGGTAAACAAATGTGTTTGA+AGG + chr4_4:78398679-78398698 Msa0705610:intron 35.0%
TGTTTGAAGGAATCAACAGA+GGG + chr4_4:78398692-78398711 Msa0705610:intron 35.0%
ATTTCTAACTTCTTGCCAGA+TGG - chr4_4:78398730-78398749 None:intergenic 35.0%
!! TCAAGGCTTTAAAATCGACA+CGG + chr4_4:78398828-78398847 Msa0705610:intron 35.0%
! ATGTTTCTATTACTGGAAGG+TGG + chr4_4:78399025-78399044 Msa0705610:intron 35.0%
!!! TCTCTATTTTGGGATCAAGA+AGG + chr4_4:78399078-78399097 Msa0705610:CDS 35.0%
CCAATGCAATAAAGTCTCTT+AGG - chr4_4:78399115-78399134 None:intergenic 35.0%
CCTAAGAGACTTTATTGCAT+TGG + chr4_4:78399112-78399131 Msa0705610:CDS 35.0%
TCAGACTATTGATAAAGCCA+AGG + chr4_4:78399145-78399164 Msa0705610:CDS 35.0%
!! TATGATTTTGGTCAGACAGA+CGG - chr4_4:78399495-78399514 None:intergenic 35.0%
TCTGTCTGACCAAAATCATA+TGG + chr4_4:78399495-78399514 Msa0705610:intron 35.0%
!! CTGGATTGTTTGATTTTGAC+CGG + chr4_4:78399578-78399597 Msa0705610:intron 35.0%
GTGATCAAGTTCAATGCAAA+AGG + chr4_4:78399834-78399853 Msa0705610:CDS 35.0%
!! AAAGGGTTGATATTGTTGTG+TGG + chr4_4:78399852-78399871 Msa0705610:CDS 35.0%
TTTGGAAGCAATCTTGAATG+AGG - chr4_4:78399895-78399914 None:intergenic 35.0%
AAAGCAACCAAACAAAGAGT+AGG - chr4_4:78399930-78399949 None:intergenic 35.0%
CTTCTACTTCAAATTCACAG+AGG + chr4_4:78399988-78400007 Msa0705610:intron 35.0%
!! GTTGATGACAACATGAGAAT+AGG + chr4_4:78400374-78400393 Msa0705610:CDS 35.0%
ATGACAACATGAGAATAGGA+AGG + chr4_4:78400378-78400397 Msa0705610:CDS 35.0%
TGACAACATGAGAATAGGAA+GGG + chr4_4:78400379-78400398 Msa0705610:CDS 35.0%
CAAAGGCAATATCTTTGTGT+TGG + chr4_4:78400406-78400425 Msa0705610:CDS 35.0%
! TTTTCCACATGTTTCCTTCA+CGG + chr4_4:78400471-78400490 Msa0705610:three_prime_UTR 35.0%
GACAAAATTACTTTCCGTGA+AGG - chr4_4:78400488-78400507 None:intergenic 35.0%
! AATTTTGTCGAAACATGGTC+AGG + chr4_4:78400499-78400518 Msa0705610:three_prime_UTR 35.0%
! TTGTAGACACTTTTATCAGC+CGG + chr4_4:78400528-78400547 Msa0705610:three_prime_UTR 35.0%
! GAAGTTTGTTTCGACATAGT+GGG + chr4_4:78400556-78400575 Msa0705610:three_prime_UTR 35.0%
ATGGATACAAGTTACCAACT+GGG - chr4_4:78400609-78400628 None:intergenic 35.0%
AATGGATACAAGTTACCAAC+TGG - chr4_4:78400610-78400629 None:intergenic 35.0%
! GTAACTTGTATCCATTGTGT+TGG + chr4_4:78400614-78400633 Msa0705610:intron 35.0%
!! TCTCAAAATTTTGGTGACCG+TGG - chr4_4:78398211-78398230 None:intergenic 40.0%
! TTCATGGTTCTACAAACCAG+AGG - chr4_4:78398374-78398393 None:intergenic 40.0%
GACCACCTAGTAATCTTTCA+TGG + chr4_4:78398417-78398436 Msa0705610:CDS 40.0%
!! GATTTGGTGAGAAGCCATTA+TGG + chr4_4:78398453-78398472 Msa0705610:CDS 40.0%
GAAGAAAAGAGAGCTTTACC+AGG + chr4_4:78398553-78398572 Msa0705610:CDS 40.0%
GTGTTTGAAGGAATCAACAG+AGG + chr4_4:78398691-78398710 Msa0705610:intron 40.0%
GGAATCAACAGAGGGATATT+TGG + chr4_4:78398700-78398719 Msa0705610:intron 40.0%
! GGGATATTTGGAATTCCATC+TGG + chr4_4:78398712-78398731 Msa0705610:CDS 40.0%
!! TCTAGTTCTAGAGTTGGTTC+TGG - chr4_4:78398793-78398812 None:intergenic 40.0%
!! ACCAACTCTAGAACTAGAGA+AGG + chr4_4:78398795-78398814 Msa0705610:CDS 40.0%
!! ACCTTCTCTAGTTCTAGAGT+TGG - chr4_4:78398799-78398818 None:intergenic 40.0%
GAGAAGGTAACTTCATGTCA+AGG + chr4_4:78398811-78398830 Msa0705610:intron 40.0%
TGCCACGACTCTTGATATTA+TGG + chr4_4:78398859-78398878 Msa0705610:intron 40.0%
CTCCATAATATCAAGAGTCG+TGG - chr4_4:78398864-78398883 None:intergenic 40.0%
TGGAGAGTTCTCGTTAAATG+TGG + chr4_4:78398879-78398898 Msa0705610:intron 40.0%
! CTCGTTAAATGTGGTTGATG+CGG + chr4_4:78398888-78398907 Msa0705610:intron 40.0%
TTCTATTACTGGAAGGTGGA+TGG + chr4_4:78399029-78399048 Msa0705610:intron 40.0%
TCTATTACTGGAAGGTGGAT+GGG + chr4_4:78399030-78399049 Msa0705610:intron 40.0%
GGATCAAGAAGGACAAAGTT+AGG + chr4_4:78399089-78399108 Msa0705610:CDS 40.0%
AGTGCGTTGTATTTGTACCT+TGG - chr4_4:78399165-78399184 None:intergenic 40.0%
! GGTTCTAATTCTGGATTGTC+CGG - chr4_4:78399600-78399619 None:intergenic 40.0%
! TTGAGTCTTTTAGCACATGC+AGG + chr4_4:78399676-78399695 Msa0705610:intron 40.0%
! TGAGTCTTTTAGCACATGCA+GGG + chr4_4:78399677-78399696 Msa0705610:intron 40.0%
!! CACAGTTGATGAACCTGTTT+CGG + chr4_4:78400152-78400171 Msa0705610:intron 40.0%
AGAATAGGAAGGGATGACAA+AGG + chr4_4:78400389-78400408 Msa0705610:CDS 40.0%
! TGTAGACACTTTTATCAGCC+GGG + chr4_4:78400529-78400548 Msa0705610:three_prime_UTR 40.0%
TCGAAACAAACTTCGAATCC+CGG - chr4_4:78400550-78400569 None:intergenic 40.0%
! CGAAGTTTGTTTCGACATAG+TGG + chr4_4:78400555-78400574 Msa0705610:three_prime_UTR 40.0%
TGGATACAAGTTACCAACTG+GGG - chr4_4:78400608-78400627 None:intergenic 40.0%
ATGAATCATGGCCAACACAA+TGG - chr4_4:78400628-78400647 None:intergenic 40.0%
TGTTGGCCATGATTCATTCT+AGG + chr4_4:78400631-78400650 Msa0705610:three_prime_UTR 40.0%
GACATCTATGCAACAGTAGT+CGG - chr4_4:78400706-78400725 None:intergenic 40.0%
GATAGGTCTATCGAGACATG+TGG - chr4_4:78398136-78398155 None:intergenic 45.0%
ACTTGAAAGAACAACGTGCG+AGG + chr4_4:78398248-78398267 Msa0705610:five_prime_UTR 45.0%
TGATTCTCATGTGAGTCCTC+TGG + chr4_4:78398355-78398374 Msa0705610:CDS 45.0%
! GCAGAACAATCTTCTGGCTA+TGG + chr4_4:78398503-78398522 Msa0705610:CDS 45.0%
!! TCTAGAGTTGGTTCTGGAGT+TGG - chr4_4:78398787-78398806 None:intergenic 45.0%
GGTTTAGATGTGGCTAACTG+CGG - chr4_4:78399474-78399493 None:intergenic 45.0%
TCAGACAGACGGTTTAGATG+TGG - chr4_4:78399484-78399503 None:intergenic 45.0%
GTGTGGAGAGCTTAGTATTG+AGG + chr4_4:78399869-78399888 Msa0705610:CDS 45.0%
TTCCACAATCACTCCTGATC+AGG + chr4_4:78400031-78400050 Msa0705610:CDS 45.0%
TACCTGATCAGGAGTGATTG+TGG - chr4_4:78400036-78400055 None:intergenic 45.0%
CATCAACTGTGCATGCAAGA+AGG - chr4_4:78400143-78400162 None:intergenic 45.0%
TTGGGCATCTTCAATCCAGA+GGG + chr4_4:78400193-78400212 Msa0705610:CDS 45.0%
CTTTCCGTGAAGGAAACATG+TGG - chr4_4:78400478-78400497 None:intergenic 45.0%
TGAAACAGGGTAGAGGGTCA+TGG - chr4_4:78398282-78398301 None:intergenic 50.0%
AAGAGAGCTTTACCAGGCTC+TGG + chr4_4:78398559-78398578 Msa0705610:CDS 50.0%
!! GGTTGATGCGGTGTCATAAG+CGG + chr4_4:78398900-78398919 Msa0705610:intron 50.0%
! GGTGTCATAAGCGGCTGTTA+TGG + chr4_4:78398909-78398928 Msa0705610:intron 50.0%
GTTGGGCATCTTCAATCCAG+AGG + chr4_4:78400192-78400211 Msa0705610:CDS 50.0%
GCATCTTCAATCCAGAGGGA+TGG + chr4_4:78400197-78400216 Msa0705610:CDS 50.0%
!! GTGATTTCTAGCCATCCCTC+TGG - chr4_4:78400211-78400230 None:intergenic 50.0%
AACAGGGTAGAGGGTCATGG+TGG - chr4_4:78398279-78398298 None:intergenic 55.0%
!! GAGCTTTACCAGGCTCTGGA+AGG + chr4_4:78398563-78398582 Msa0705610:CDS 55.0%
AGATGCTACCTTCCAGAGCC+TGG - chr4_4:78398574-78398593 None:intergenic 55.0%
ACTGGAAGGTGGATGGGTGT+TGG + chr4_4:78399036-78399055 Msa0705610:intron 55.0%
!! GGAAGGTGGATGGGTGTTGG+AGG + chr4_4:78399039-78399058 Msa0705610:intron 60.0%
TGGGGTTGTGTCGAGCGGAA+GGG - chr4_4:78400590-78400609 None:intergenic 60.0%
CCAACTGGGGTTGTGTCGAG+CGG - chr4_4:78400595-78400614 None:intergenic 60.0%
GGGGTTGTGTCGAGCGGAAG+GGG - chr4_4:78400589-78400608 None:intergenic 65.0%
CTGGGGTTGTGTCGAGCGGA+AGG - chr4_4:78400591-78400610 None:intergenic 65.0%
CCGCTCGACACAACCCCAGT+TGG + chr4_4:78400592-78400611 Msa0705610:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 78398126 78400812 78398126 ID=Msa0705610;Name=Msa0705610
chr4_4 mRNA 78398126 78400812 78398126 ID=Msa0705610-mRNA-1;Parent=Msa0705610;Name=Msa0705610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=224|1|1|1|0.85|0.75|8|332|259
chr4_4 exon 78398126 78398584 78398126 ID=Msa0705610-mRNA-1:exon:24999;Parent=Msa0705610-mRNA-1
chr4_4 exon 78398701 78398816 78398701 ID=Msa0705610-mRNA-1:exon:25000;Parent=Msa0705610-mRNA-1
chr4_4 exon 78399044 78399166 78399044 ID=Msa0705610-mRNA-1:exon:25001;Parent=Msa0705610-mRNA-1
chr4_4 exon 78399819 78399917 78399819 ID=Msa0705610-mRNA-1:exon:25002;Parent=Msa0705610-mRNA-1
chr4_4 exon 78400008 78400052 78400008 ID=Msa0705610-mRNA-1:exon:25003;Parent=Msa0705610-mRNA-1
chr4_4 exon 78400157 78400230 78400157 ID=Msa0705610-mRNA-1:exon:25004;Parent=Msa0705610-mRNA-1
chr4_4 exon 78400370 78400594 78400370 ID=Msa0705610-mRNA-1:exon:25005;Parent=Msa0705610-mRNA-1
chr4_4 exon 78400618 78400812 78400618 ID=Msa0705610-mRNA-1:exon:25006;Parent=Msa0705610-mRNA-1
chr4_4 five_prime_UTR 78398126 78398349 78398126 ID=Msa0705610-mRNA-1:five_prime_utr;Parent=Msa0705610-mRNA-1
chr4_4 CDS 78398350 78398584 78398350 ID=Msa0705610-mRNA-1:cds;Parent=Msa0705610-mRNA-1
chr4_4 CDS 78398701 78398816 78398701 ID=Msa0705610-mRNA-1:cds;Parent=Msa0705610-mRNA-1
chr4_4 CDS 78399044 78399166 78399044 ID=Msa0705610-mRNA-1:cds;Parent=Msa0705610-mRNA-1
chr4_4 CDS 78399819 78399917 78399819 ID=Msa0705610-mRNA-1:cds;Parent=Msa0705610-mRNA-1
chr4_4 CDS 78400008 78400052 78400008 ID=Msa0705610-mRNA-1:cds;Parent=Msa0705610-mRNA-1
chr4_4 CDS 78400157 78400230 78400157 ID=Msa0705610-mRNA-1:cds;Parent=Msa0705610-mRNA-1
chr4_4 CDS 78400370 78400457 78400370 ID=Msa0705610-mRNA-1:cds;Parent=Msa0705610-mRNA-1
chr4_4 three_prime_UTR 78400458 78400594 78400458 ID=Msa0705610-mRNA-1:three_prime_utr;Parent=Msa0705610-mRNA-1
chr4_4 three_prime_UTR 78400618 78400812 78400618 ID=Msa0705610-mRNA-1:three_prime_utr;Parent=Msa0705610-mRNA-1
Gene Sequence

>Msa0705610

ATGAATGATTCTCATGTGAGTCCTCTGGTTTGTAGAACCATGAATATCATGAAACTTCAAAGATTTGGACCACCTAGTAATCTTTCATGGATAAACACTTCAAGATTTGGTGAGAAGCCATTATGGTTTAGACCCATTACTATCATTAAAGTTGCAGAACAATCTTCTGGCTATGGCTTAGTTGAAGATGAAGCACTTGGACAGAAGAAAAGAGAGCTTTACCAGGCTCTGGAAGGAATCAACAGAGGGATATTTGGAATTCCATCTGGCAAGAAGTTAGAAATTGAAAGTTTGGTGAAGCAGCTAGAATCTCAAAATCCAACTCCAGAACCAACTCTAGAACTAGAGAAGGTGGATGGGTGTTGGAGGCTTGTTTATAGCACTATCTCTATTTTGGGATCAAGAAGGACAAAGTTAGGCCTAAGAGACTTTATTGCATTGGGTGATTTCTTTCAGACTATTGATAAAGCCAAGAGCAAAGCGGTGAACGTGATCAAGTTCAATGCAAAAGGGTTGATATTGTTGTGTGGAGAGCTTAGTATTGAGGCCTCATTCAAGATTGCTTCCAAAACAAGGGTTGACATTAATTTTGAAAATTCCACAATCACTCCTGATCAGTTGATGAACCTGTTTCGGAAAAATTATGATATTTTGTTGGGCATCTTCAATCCAGAGGGATGGCTAGAAATCACATATGTTGATGACAACATGAGAATAGGAAGGGATGACAAAGGCAATATCTTTGTGTTGGAAAGATTTGAAGATAATAGCAACTCGTAG

Protein sequence

>Msa0705610

MNDSHVSPLVCRTMNIMKLQRFGPPSNLSWINTSRFGEKPLWFRPITIIKVAEQSSGYGLVEDEALGQKKRELYQALEGINRGIFGIPSGKKLEIESLVKQLESQNPTPEPTLELEKVDGCWRLVYSTISILGSRRTKLGLRDFIALGDFFQTIDKAKSKAVNVIKFNAKGLILLCGELSIEASFKIASKTRVDINFENSTITPDQLMNLFRKNYDILLGIFNPEGWLEITYVDDNMRIGRDDKGNIFVLERFEDNSNS*