AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0150210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150210 MtrunA17_Chr1g0157681 97.692 130 3 0 1 130 1 130 4.61e-88 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0150210 AT1G30380.1 82.443 131 21 2 1 130 1 130 2.25e-73 215

Find 69 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTTAACTGTAATATT+TGG 0.177621 1_4:-11488316 Msa0150210:three_prime_UTR
GTACTTAAAACATTATTTAT+TGG 0.213920 1_4:-11488120 Msa0150210:three_prime_UTR
TTGAACTATCGAGTCACTTA+TGG 0.244374 1_4:+11488203 None:intergenic
ATTGGTGTTGGTGTTGTTCT+TGG 0.264103 1_4:-11488452 Msa0150210:CDS
ATCTTCCAGCAAACAACATT+AGG 0.298751 1_4:+11488612 None:intergenic
TTTCCCTTGCGCCTTGTCAT+AGG 0.324595 1_4:+11489382 None:intergenic
GCGCAAGGGAAAGGGTGCTT+TGG 0.345906 1_4:-11489371 Msa0150210:CDS
GTTCACCCTTGCTGATACTT+TGG 0.359682 1_4:-11488498 Msa0150210:CDS
CCTCACATAGTTTGAACAAA+TGG 0.366099 1_4:-11489840 Msa0150210:exon
ATCGTTCTAGTGAGGGTATT+GGG 0.368829 1_4:+11488173 None:intergenic
TTGCAGACTGGTGACCCAGC+TGG 0.370604 1_4:-11488521 Msa0150210:CDS
CGCAAGGGAAAGGGTGCTTT+GGG 0.371284 1_4:-11489370 Msa0150210:CDS
ATGATTGAATCGCATTGAAT+TGG 0.373378 1_4:+11488232 None:intergenic
ACCTTCTCCTATCCAGGGTT+TGG 0.377236 1_4:-11489762 Msa0150210:intron
ATGTTGTTTGCTGGAAGATT+TGG 0.379579 1_4:-11488608 Msa0150210:CDS
TAAAACATTATTTATTGGTT+TGG 0.379918 1_4:-11488115 Msa0150210:three_prime_UTR
TTGAAATCATACCACATTAG+TGG 0.382365 1_4:+11489321 None:intergenic
GGAGTTCGTTGTGACTTCAT+TGG 0.392047 1_4:-11489349 Msa0150210:CDS
TCTTCCAGCAAACAACATTA+GGG 0.393888 1_4:+11488613 None:intergenic
ACAACCCTAATGTTGTTTGC+TGG 0.398888 1_4:-11488617 Msa0150210:CDS
GATCGTTCTAGTGAGGGTAT+TGG 0.399507 1_4:+11488172 None:intergenic
TTACAGTTAAGAAAGAATAA+AGG 0.404566 1_4:+11488323 None:intergenic
GTTGCTTTCCTGTTTGCTGA+TGG 0.410830 1_4:+11488578 None:intergenic
CCTTGCGCCTTGTCATAGGT+TGG 0.425942 1_4:+11489386 None:intergenic
TGCAGACTGGTGACCCAGCT+GGG 0.430536 1_4:-11488520 Msa0150210:CDS
ACTCAAACCTTCTCCTATCC+AGG 0.437202 1_4:-11489768 Msa0150210:CDS
GATTGGCTCCATCAGCAAAC+AGG 0.437905 1_4:-11488586 Msa0150210:CDS
TCAGCAAGGGTGAACCCAGC+TGG 0.438597 1_4:+11488506 None:intergenic
CTTGCGCCTTGTCATAGGTT+GGG 0.439768 1_4:+11489387 None:intergenic
GGATGACTCGATTGTATCAC+TGG 0.446726 1_4:+11488253 None:intergenic
ACAACTTTGCCTCAATTCAC+TGG 0.462189 1_4:-11489803 Msa0150210:CDS
AGCAACAGCAGGACTAAAGC+TGG 0.487183 1_4:-11488561 Msa0150210:CDS
AAGAAGTAAGCAGAATCTAA+TGG 0.491151 1_4:+11489953 None:intergenic
GATTGTATCACTGGGTCTCT+AGG 0.493917 1_4:+11488262 None:intergenic
GTTTGCTGGAAGATTTGGAT+TGG 0.494741 1_4:-11488603 Msa0150210:CDS
TATGACAAGGCGCAAGGGAA+AGG 0.505007 1_4:-11489380 Msa0150210:CDS
ACTTTGGCCTGTGGAACTGT+TGG 0.509321 1_4:-11488482 Msa0150210:CDS
ATGACAAGGCGCAAGGGAAA+GGG 0.519777 1_4:-11489379 Msa0150210:CDS
CTTGCTGATACTTTGGCCTG+TGG 0.531365 1_4:-11488491 Msa0150210:CDS
GGAACTGTTGGACACATCAT+TGG 0.534067 1_4:-11488470 Msa0150210:CDS
GTTCTTGGTCTTAAGAACAT+TGG 0.536798 1_4:-11488437 Msa0150210:CDS
AGGGACTCAGGCTTGCAGAC+TGG 0.536809 1_4:-11488533 Msa0150210:CDS
CAGGACTAAAGCTGGAGACA+AGG 0.539368 1_4:-11488553 Msa0150210:CDS
TGCTACCAAGTGATTACTTG+AGG 0.546307 1_4:-11488081 Msa0150210:three_prime_UTR
ACCAAACCCTGGATAGGAGA+AGG 0.553964 1_4:+11489761 None:intergenic
AAGCTGGAGACAAGGGACTC+AGG 0.559360 1_4:-11488545 Msa0150210:CDS
CCATTTGTTCAAACTATGTG+AGG 0.559418 1_4:+11489840 None:intergenic
CAGCAAGGGTGAACCCAGCT+GGG 0.567280 1_4:+11488507 None:intergenic
CTCGGTGATCGTTCTAGTGA+GGG 0.575286 1_4:+11488166 None:intergenic
GATGTGTCCAACAGTTCCAC+AGG 0.576438 1_4:+11488475 None:intergenic
ATAGGAGAAGGTTTGAGTTG+TGG 0.576762 1_4:+11489773 None:intergenic
AGGCAAAGTTGTCATCATAG+AGG 0.584160 1_4:+11489814 None:intergenic
TTAATTACCAAACCCTGGAT+AGG 0.584959 1_4:+11489755 None:intergenic
CATTGGTTCATCCACTAATG+TGG 0.586749 1_4:-11489332 Msa0150210:intron
AGGACTAAAGCTGGAGACAA+GGG 0.595838 1_4:-11488552 Msa0150210:CDS
CTCAAACCTTCTCCTATCCA+GGG 0.595941 1_4:-11489767 Msa0150210:CDS
AGAATCCTCAAGTAATCACT+TGG 0.597013 1_4:+11488076 None:intergenic
CCAACCTATGACAAGGCGCA+AGG 0.600144 1_4:-11489386 Msa0150210:CDS
CACAGGCCAAAGTATCAGCA+AGG 0.601389 1_4:+11488492 None:intergenic
AGTGGTTAATTACCAAACCC+TGG 0.602633 1_4:+11489750 None:intergenic
GGTCTAAGACCAGTGAATTG+AGG 0.606924 1_4:+11489794 None:intergenic
GTTGGACACATCATTGGTGT+TGG 0.612231 1_4:-11488464 Msa0150210:CDS
GCAAACAGGAAAGCAACAGC+AGG 0.614247 1_4:-11488572 Msa0150210:CDS
CAACCTATGACAAGGCGCAA+GGG 0.619501 1_4:-11489385 Msa0150210:CDS
ACTCGGTGATCGTTCTAGTG+AGG 0.624515 1_4:+11488165 None:intergenic
ACAGGCCAAAGTATCAGCAA+GGG 0.672894 1_4:+11488493 None:intergenic
TAGCTGCCCAACCTATGACA+AGG 0.676763 1_4:-11489393 Msa0150210:CDS
GATGACTCGATTGTATCACT+GGG 0.704301 1_4:+11488254 None:intergenic
ACATGTTGGACAGATTATGG+TGG 0.710941 1_4:-11488645 Msa0150210:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGTTTTATAATTCATA+AGG + chr1_4:11488388-11488407 None:intergenic 10.0%
!!! TTTAAGTTTTATAATTCATA+AGG + chr1_4:11488388-11488407 None:intergenic 10.0%
!!! GTTTTTTTATTTTTATGTGA+AGG - chr1_4:11488622-11488641 Msa0150210:CDS 15.0%
!!! TAGAATTTTGATACAATAAA+CGG + chr1_4:11488984-11489003 None:intergenic 15.0%
!! GTACTTAAAACATTATTTAT+TGG - chr1_4:11489918-11489937 Msa0150210:five_prime_UTR 15.0%
!!! TAAAACATTATTTATTGGTT+TGG - chr1_4:11489923-11489942 Msa0150210:five_prime_UTR 15.0%
!!! GTTTTTTTATTTTTATGTGA+AGG - chr1_4:11488622-11488641 Msa0150210:CDS 15.0%
!!! TAGAATTTTGATACAATAAA+CGG + chr1_4:11488984-11489003 None:intergenic 15.0%
!! GTACTTAAAACATTATTTAT+TGG - chr1_4:11489918-11489937 Msa0150210:five_prime_UTR 15.0%
!!! TAAAACATTATTTATTGGTT+TGG - chr1_4:11489923-11489942 Msa0150210:five_prime_UTR 15.0%
!! AGATGATGTATATATTATGA+AGG + chr1_4:11488424-11488443 None:intergenic 20.0%
!! TTCATAATATATACATCATC+TGG - chr1_4:11488423-11488442 Msa0150210:exon 20.0%
!! ATGAATAAAAACATTGGAAT+TGG + chr1_4:11488752-11488771 None:intergenic 20.0%
!!! AAAACTATACACATCATTTT+TGG + chr1_4:11488894-11488913 None:intergenic 20.0%
!!! ATGTTATTTAAAATAGTCTC+TGG - chr1_4:11489026-11489045 Msa0150210:intron 20.0%
!!! TTGAAATTTTGATGCATTAA+AGG - chr1_4:11489211-11489230 Msa0150210:intron 20.0%
!!! TGAAATTTTGATGCATTAAA+GGG - chr1_4:11489212-11489231 Msa0150210:intron 20.0%
!! TTACAGTTAAGAAAGAATAA+AGG + chr1_4:11489718-11489737 None:intergenic 20.0%
!! TCTTTCTTAACTGTAATATT+TGG - chr1_4:11489722-11489741 Msa0150210:intron 20.0%
!! AGATGATGTATATATTATGA+AGG + chr1_4:11488424-11488443 None:intergenic 20.0%
!! TTCATAATATATACATCATC+TGG - chr1_4:11488423-11488442 Msa0150210:exon 20.0%
!! ATGAATAAAAACATTGGAAT+TGG + chr1_4:11488752-11488771 None:intergenic 20.0%
!!! AAAACTATACACATCATTTT+TGG + chr1_4:11488894-11488913 None:intergenic 20.0%
!!! ATGTTATTTAAAATAGTCTC+TGG - chr1_4:11489026-11489045 Msa0150210:intron 20.0%
!!! TTGAAATTTTGATGCATTAA+AGG - chr1_4:11489211-11489230 Msa0150210:intron 20.0%
!!! TGAAATTTTGATGCATTAAA+GGG - chr1_4:11489212-11489231 Msa0150210:intron 20.0%
!! TTACAGTTAAGAAAGAATAA+AGG + chr1_4:11489718-11489737 None:intergenic 20.0%
!! TCTTTCTTAACTGTAATATT+TGG - chr1_4:11489722-11489741 Msa0150210:intron 20.0%
!! ATTTTGCTTATATTTGTGAC+CGG - chr1_4:11488554-11488573 Msa0150210:CDS 25.0%
!! TGTAACTTTTGTCAAAAACA+TGG + chr1_4:11488816-11488835 None:intergenic 25.0%
! TAACGAGTTTCACAAAATTA+CGG + chr1_4:11488869-11488888 None:intergenic 25.0%
! TTAACTTCAATTAGTGAGAA+TGG - chr1_4:11489302-11489321 Msa0150210:intron 25.0%
!!! TAGTGTTTTAACAATCAACT+CGG + chr1_4:11489893-11489912 None:intergenic 25.0%
!! ATTTTGCTTATATTTGTGAC+CGG - chr1_4:11488554-11488573 Msa0150210:CDS 25.0%
!! TGTAACTTTTGTCAAAAACA+TGG + chr1_4:11488816-11488835 None:intergenic 25.0%
! TAACGAGTTTCACAAAATTA+CGG + chr1_4:11488869-11488888 None:intergenic 25.0%
! TTAACTTCAATTAGTGAGAA+TGG - chr1_4:11489302-11489321 Msa0150210:intron 25.0%
!!! TAGTGTTTTAACAATCAACT+CGG + chr1_4:11489893-11489912 None:intergenic 25.0%
AAGAAGTAAGCAGAATCTAA+TGG + chr1_4:11488088-11488107 None:intergenic 30.0%
! TTCACACACAAAGATTTTGA+AGG + chr1_4:11488133-11488152 None:intergenic 30.0%
AAATCATGACATGTAAAGAG+TGG + chr1_4:11488309-11488328 None:intergenic 30.0%
CATTCAACAAATGATGTATG+TGG + chr1_4:11488519-11488538 None:intergenic 30.0%
TTGAAATCATACCACATTAG+TGG + chr1_4:11488720-11488739 None:intergenic 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_4:11488758-11488777 None:intergenic 30.0%
! TTTTATTCATAGTGCGTGTT+TGG - chr1_4:11488762-11488781 Msa0150210:intron 30.0%
! GTTTTCTTGTCCAATTATTG+TGG - chr1_4:11488909-11488928 Msa0150210:intron 30.0%
GATACAATAAACGGCTATTA+TGG + chr1_4:11488975-11488994 None:intergenic 30.0%
GACAGATAATACAGTACTAA+CGG - chr1_4:11489132-11489151 Msa0150210:intron 30.0%
ATAGTGTCACAATAAAACAG+CGG + chr1_4:11489273-11489292 None:intergenic 30.0%
! TATGATTGACTTTGACATGT+TGG - chr1_4:11489379-11489398 Msa0150210:CDS 30.0%
ACATTGGTGCATTGTAAAAA+AGG - chr1_4:11489617-11489636 Msa0150210:intron 30.0%
ATGATTGAATCGCATTGAAT+TGG + chr1_4:11489809-11489828 None:intergenic 30.0%
AAGAAGTAAGCAGAATCTAA+TGG + chr1_4:11488088-11488107 None:intergenic 30.0%
! TTCACACACAAAGATTTTGA+AGG + chr1_4:11488133-11488152 None:intergenic 30.0%
AAATCATGACATGTAAAGAG+TGG + chr1_4:11488309-11488328 None:intergenic 30.0%
CATTCAACAAATGATGTATG+TGG + chr1_4:11488519-11488538 None:intergenic 30.0%
TTGAAATCATACCACATTAG+TGG + chr1_4:11488720-11488739 None:intergenic 30.0%
CGCACTATGAATAAAAACAT+TGG + chr1_4:11488758-11488777 None:intergenic 30.0%
! TTTTATTCATAGTGCGTGTT+TGG - chr1_4:11488762-11488781 Msa0150210:intron 30.0%
! GTTTTCTTGTCCAATTATTG+TGG - chr1_4:11488909-11488928 Msa0150210:intron 30.0%
GATACAATAAACGGCTATTA+TGG + chr1_4:11488975-11488994 None:intergenic 30.0%
GACAGATAATACAGTACTAA+CGG - chr1_4:11489132-11489151 Msa0150210:intron 30.0%
ATAGTGTCACAATAAAACAG+CGG + chr1_4:11489273-11489292 None:intergenic 30.0%
! TATGATTGACTTTGACATGT+TGG - chr1_4:11489379-11489398 Msa0150210:CDS 30.0%
ACATTGGTGCATTGTAAAAA+AGG - chr1_4:11489617-11489636 Msa0150210:intron 30.0%
ATGATTGAATCGCATTGAAT+TGG + chr1_4:11489809-11489828 None:intergenic 30.0%
CCATTTGTTCAAACTATGTG+AGG + chr1_4:11488201-11488220 None:intergenic 35.0%
CCTCACATAGTTTGAACAAA+TGG - chr1_4:11488198-11488217 Msa0150210:three_prime_UTR 35.0%
TTAATTACCAAACCCTGGAT+AGG + chr1_4:11488286-11488305 None:intergenic 35.0%
TCCAATTATTGTGGACGTAT+TGG - chr1_4:11488918-11488937 Msa0150210:intron 35.0%
ACCAATACGTCCACAATAAT+TGG + chr1_4:11488922-11488941 None:intergenic 35.0%
ATATGTCAGTAAGTGTTTCC+AGG - chr1_4:11489100-11489119 Msa0150210:intron 35.0%
TATGTCAGTAAGTGTTTCCA+GGG - chr1_4:11489101-11489120 Msa0150210:intron 35.0%
TTGACATGTTGGACAGATTA+TGG - chr1_4:11489390-11489409 Msa0150210:CDS 35.0%
TCTTCCAGCAAACAACATTA+GGG + chr1_4:11489428-11489447 None:intergenic 35.0%
ATCTTCCAGCAAACAACATT+AGG + chr1_4:11489429-11489448 None:intergenic 35.0%
! ATGTTGTTTGCTGGAAGATT+TGG - chr1_4:11489430-11489449 Msa0150210:intron 35.0%
!! GTTCTTGGTCTTAAGAACAT+TGG - chr1_4:11489601-11489620 Msa0150210:intron 35.0%
TTGAACTATCGAGTCACTTA+TGG + chr1_4:11489838-11489857 None:intergenic 35.0%
AGAATCCTCAAGTAATCACT+TGG + chr1_4:11489965-11489984 None:intergenic 35.0%
CCATTTGTTCAAACTATGTG+AGG + chr1_4:11488201-11488220 None:intergenic 35.0%
CCTCACATAGTTTGAACAAA+TGG - chr1_4:11488198-11488217 Msa0150210:three_prime_UTR 35.0%
TTAATTACCAAACCCTGGAT+AGG + chr1_4:11488286-11488305 None:intergenic 35.0%
TCCAATTATTGTGGACGTAT+TGG - chr1_4:11488918-11488937 Msa0150210:intron 35.0%
ACCAATACGTCCACAATAAT+TGG + chr1_4:11488922-11488941 None:intergenic 35.0%
ATATGTCAGTAAGTGTTTCC+AGG - chr1_4:11489100-11489119 Msa0150210:intron 35.0%
TATGTCAGTAAGTGTTTCCA+GGG - chr1_4:11489101-11489120 Msa0150210:intron 35.0%
TTGACATGTTGGACAGATTA+TGG - chr1_4:11489390-11489409 Msa0150210:CDS 35.0%
TCTTCCAGCAAACAACATTA+GGG + chr1_4:11489428-11489447 None:intergenic 35.0%
ATCTTCCAGCAAACAACATT+AGG + chr1_4:11489429-11489448 None:intergenic 35.0%
! ATGTTGTTTGCTGGAAGATT+TGG - chr1_4:11489430-11489449 Msa0150210:intron 35.0%
!! GTTCTTGGTCTTAAGAACAT+TGG - chr1_4:11489601-11489620 Msa0150210:intron 35.0%
TTGAACTATCGAGTCACTTA+TGG + chr1_4:11489838-11489857 None:intergenic 35.0%
AGAATCCTCAAGTAATCACT+TGG + chr1_4:11489965-11489984 None:intergenic 35.0%
AGGCAAAGTTGTCATCATAG+AGG + chr1_4:11488227-11488246 None:intergenic 40.0%
ACAACTTTGCCTCAATTCAC+TGG - chr1_4:11488235-11488254 Msa0150210:three_prime_UTR 40.0%
!! ATAGGAGAAGGTTTGAGTTG+TGG + chr1_4:11488268-11488287 None:intergenic 40.0%
AGTGGTTAATTACCAAACCC+TGG + chr1_4:11488291-11488310 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr1_4:11488557-11488576 Msa0150210:CDS 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr1_4:11488558-11488577 Msa0150210:CDS 40.0%
CAAAACGTAAATACACCCTC+CGG + chr1_4:11488576-11488595 None:intergenic 40.0%
!! CATTGGTTCATCCACTAATG+TGG - chr1_4:11488706-11488725 Msa0150210:intron 40.0%
ATAGTGCGTGTTTGGATTGA+CGG - chr1_4:11488770-11488789 Msa0150210:intron 40.0%
!! TGTGGACGTATTGGTCATTT+TGG - chr1_4:11488927-11488946 Msa0150210:intron 40.0%
TGGCTACTCGTTGTACATTA+TGG + chr1_4:11488955-11488974 None:intergenic 40.0%
ACATGTTGGACAGATTATGG+TGG - chr1_4:11489393-11489412 Msa0150210:CDS 40.0%
! ACAACCCTAATGTTGTTTGC+TGG - chr1_4:11489421-11489440 Msa0150210:intron 40.0%
! GTTTGCTGGAAGATTTGGAT+TGG - chr1_4:11489435-11489454 Msa0150210:intron 40.0%
!! ATTGGTGTTGGTGTTGTTCT+TGG - chr1_4:11489586-11489605 Msa0150210:intron 40.0%
GATGACTCGATTGTATCACT+GGG + chr1_4:11489787-11489806 None:intergenic 40.0%
!! ATCGTTCTAGTGAGGGTATT+GGG + chr1_4:11489868-11489887 None:intergenic 40.0%
TGCTACCAAGTGATTACTTG+AGG - chr1_4:11489957-11489976 Msa0150210:five_prime_UTR 40.0%
AGGCAAAGTTGTCATCATAG+AGG + chr1_4:11488227-11488246 None:intergenic 40.0%
ACAACTTTGCCTCAATTCAC+TGG - chr1_4:11488235-11488254 Msa0150210:three_prime_UTR 40.0%
!! ATAGGAGAAGGTTTGAGTTG+TGG + chr1_4:11488268-11488287 None:intergenic 40.0%
AGTGGTTAATTACCAAACCC+TGG + chr1_4:11488291-11488310 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr1_4:11488557-11488576 Msa0150210:CDS 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr1_4:11488558-11488577 Msa0150210:CDS 40.0%
CAAAACGTAAATACACCCTC+CGG + chr1_4:11488576-11488595 None:intergenic 40.0%
!! CATTGGTTCATCCACTAATG+TGG - chr1_4:11488706-11488725 Msa0150210:intron 40.0%
ATAGTGCGTGTTTGGATTGA+CGG - chr1_4:11488770-11488789 Msa0150210:intron 40.0%
!! TGTGGACGTATTGGTCATTT+TGG - chr1_4:11488927-11488946 Msa0150210:intron 40.0%
TGGCTACTCGTTGTACATTA+TGG + chr1_4:11488955-11488974 None:intergenic 40.0%
ACATGTTGGACAGATTATGG+TGG - chr1_4:11489393-11489412 Msa0150210:CDS 40.0%
! ACAACCCTAATGTTGTTTGC+TGG - chr1_4:11489421-11489440 Msa0150210:intron 40.0%
! GTTTGCTGGAAGATTTGGAT+TGG - chr1_4:11489435-11489454 Msa0150210:intron 40.0%
!! ATTGGTGTTGGTGTTGTTCT+TGG - chr1_4:11489586-11489605 Msa0150210:intron 40.0%
GATGACTCGATTGTATCACT+GGG + chr1_4:11489787-11489806 None:intergenic 40.0%
!! ATCGTTCTAGTGAGGGTATT+GGG + chr1_4:11489868-11489887 None:intergenic 40.0%
TGCTACCAAGTGATTACTTG+AGG - chr1_4:11489957-11489976 Msa0150210:five_prime_UTR 40.0%
! GGTCTAAGACCAGTGAATTG+AGG + chr1_4:11488247-11488266 None:intergenic 45.0%
ACTCAAACCTTCTCCTATCC+AGG - chr1_4:11488270-11488289 Msa0150210:three_prime_UTR 45.0%
CTCAAACCTTCTCCTATCCA+GGG - chr1_4:11488271-11488290 Msa0150210:three_prime_UTR 45.0%
!! CGGAGGGTGTATTTACGTTT+TGG - chr1_4:11488574-11488593 Msa0150210:CDS 45.0%
GGAGTTCGTTGTGACTTCAT+TGG - chr1_4:11488689-11488708 Msa0150210:intron 45.0%
TTATCTGTCACATCAGTCCC+TGG + chr1_4:11489121-11489140 None:intergenic 45.0%
! GTTGCTTTCCTGTTTGCTGA+TGG + chr1_4:11489463-11489482 None:intergenic 45.0%
AGGACTAAAGCTGGAGACAA+GGG - chr1_4:11489486-11489505 Msa0150210:intron 45.0%
GTTCACCCTTGCTGATACTT+TGG - chr1_4:11489540-11489559 Msa0150210:intron 45.0%
! ACAGGCCAAAGTATCAGCAA+GGG + chr1_4:11489548-11489567 None:intergenic 45.0%
GGAACTGTTGGACACATCAT+TGG - chr1_4:11489568-11489587 Msa0150210:intron 45.0%
GTTGGACACATCATTGGTGT+TGG - chr1_4:11489574-11489593 Msa0150210:intron 45.0%
GATTGTATCACTGGGTCTCT+AGG + chr1_4:11489779-11489798 None:intergenic 45.0%
GGATGACTCGATTGTATCAC+TGG + chr1_4:11489788-11489807 None:intergenic 45.0%
! GATCGTTCTAGTGAGGGTAT+TGG + chr1_4:11489869-11489888 None:intergenic 45.0%
! GGTCTAAGACCAGTGAATTG+AGG + chr1_4:11488247-11488266 None:intergenic 45.0%
ACTCAAACCTTCTCCTATCC+AGG - chr1_4:11488270-11488289 Msa0150210:three_prime_UTR 45.0%
CTCAAACCTTCTCCTATCCA+GGG - chr1_4:11488271-11488290 Msa0150210:three_prime_UTR 45.0%
!! CGGAGGGTGTATTTACGTTT+TGG - chr1_4:11488574-11488593 Msa0150210:CDS 45.0%
GGAGTTCGTTGTGACTTCAT+TGG - chr1_4:11488689-11488708 Msa0150210:intron 45.0%
TTATCTGTCACATCAGTCCC+TGG + chr1_4:11489121-11489140 None:intergenic 45.0%
! GTTGCTTTCCTGTTTGCTGA+TGG + chr1_4:11489463-11489482 None:intergenic 45.0%
AGGACTAAAGCTGGAGACAA+GGG - chr1_4:11489486-11489505 Msa0150210:intron 45.0%
GTTCACCCTTGCTGATACTT+TGG - chr1_4:11489540-11489559 Msa0150210:intron 45.0%
! ACAGGCCAAAGTATCAGCAA+GGG + chr1_4:11489548-11489567 None:intergenic 45.0%
GGAACTGTTGGACACATCAT+TGG - chr1_4:11489568-11489587 Msa0150210:intron 45.0%
GTTGGACACATCATTGGTGT+TGG - chr1_4:11489574-11489593 Msa0150210:intron 45.0%
GATTGTATCACTGGGTCTCT+AGG + chr1_4:11489779-11489798 None:intergenic 45.0%
GGATGACTCGATTGTATCAC+TGG + chr1_4:11489788-11489807 None:intergenic 45.0%
! GATCGTTCTAGTGAGGGTAT+TGG + chr1_4:11489869-11489888 None:intergenic 45.0%
ACCTTCTCCTATCCAGGGTT+TGG - chr1_4:11488276-11488295 Msa0150210:three_prime_UTR 50.0%
ACCAAACCCTGGATAGGAGA+AGG + chr1_4:11488280-11488299 None:intergenic 50.0%
TAGCTGCCCAACCTATGACA+AGG - chr1_4:11488645-11488664 Msa0150210:intron 50.0%
CTTGCGCCTTGTCATAGGTT+GGG + chr1_4:11488654-11488673 None:intergenic 50.0%
CAACCTATGACAAGGCGCAA+GGG - chr1_4:11488653-11488672 Msa0150210:intron 50.0%
TTTCCCTTGCGCCTTGTCAT+AGG + chr1_4:11488659-11488678 None:intergenic 50.0%
TATGACAAGGCGCAAGGGAA+AGG - chr1_4:11488658-11488677 Msa0150210:intron 50.0%
ATGACAAGGCGCAAGGGAAA+GGG - chr1_4:11488659-11488678 Msa0150210:intron 50.0%
! GATTGGCTCCATCAGCAAAC+AGG - chr1_4:11489452-11489471 Msa0150210:intron 50.0%
GCAAACAGGAAAGCAACAGC+AGG - chr1_4:11489466-11489485 Msa0150210:intron 50.0%
AGCAACAGCAGGACTAAAGC+TGG - chr1_4:11489477-11489496 Msa0150210:intron 50.0%
CAGGACTAAAGCTGGAGACA+AGG - chr1_4:11489485-11489504 Msa0150210:intron 50.0%
! CACAGGCCAAAGTATCAGCA+AGG + chr1_4:11489549-11489568 None:intergenic 50.0%
CTTGCTGATACTTTGGCCTG+TGG - chr1_4:11489547-11489566 Msa0150210:intron 50.0%
ACTTTGGCCTGTGGAACTGT+TGG - chr1_4:11489556-11489575 Msa0150210:intron 50.0%
GATGTGTCCAACAGTTCCAC+AGG + chr1_4:11489566-11489585 None:intergenic 50.0%
CTCGGTGATCGTTCTAGTGA+GGG + chr1_4:11489875-11489894 None:intergenic 50.0%
! ACTCGGTGATCGTTCTAGTG+AGG + chr1_4:11489876-11489895 None:intergenic 50.0%
ACCTTCTCCTATCCAGGGTT+TGG - chr1_4:11488276-11488295 Msa0150210:three_prime_UTR 50.0%
ACCAAACCCTGGATAGGAGA+AGG + chr1_4:11488280-11488299 None:intergenic 50.0%
TAGCTGCCCAACCTATGACA+AGG - chr1_4:11488645-11488664 Msa0150210:intron 50.0%
CTTGCGCCTTGTCATAGGTT+GGG + chr1_4:11488654-11488673 None:intergenic 50.0%
CAACCTATGACAAGGCGCAA+GGG - chr1_4:11488653-11488672 Msa0150210:intron 50.0%
TTTCCCTTGCGCCTTGTCAT+AGG + chr1_4:11488659-11488678 None:intergenic 50.0%
TATGACAAGGCGCAAGGGAA+AGG - chr1_4:11488658-11488677 Msa0150210:intron 50.0%
ATGACAAGGCGCAAGGGAAA+GGG - chr1_4:11488659-11488678 Msa0150210:intron 50.0%
! GATTGGCTCCATCAGCAAAC+AGG - chr1_4:11489452-11489471 Msa0150210:intron 50.0%
GCAAACAGGAAAGCAACAGC+AGG - chr1_4:11489466-11489485 Msa0150210:intron 50.0%
AGCAACAGCAGGACTAAAGC+TGG - chr1_4:11489477-11489496 Msa0150210:intron 50.0%
CAGGACTAAAGCTGGAGACA+AGG - chr1_4:11489485-11489504 Msa0150210:intron 50.0%
! CACAGGCCAAAGTATCAGCA+AGG + chr1_4:11489549-11489568 None:intergenic 50.0%
CTTGCTGATACTTTGGCCTG+TGG - chr1_4:11489547-11489566 Msa0150210:intron 50.0%
ACTTTGGCCTGTGGAACTGT+TGG - chr1_4:11489556-11489575 Msa0150210:intron 50.0%
GATGTGTCCAACAGTTCCAC+AGG + chr1_4:11489566-11489585 None:intergenic 50.0%
CTCGGTGATCGTTCTAGTGA+GGG + chr1_4:11489875-11489894 None:intergenic 50.0%
! ACTCGGTGATCGTTCTAGTG+AGG + chr1_4:11489876-11489895 None:intergenic 50.0%
CCTTGCGCCTTGTCATAGGT+TGG + chr1_4:11488655-11488674 None:intergenic 55.0%
CCAACCTATGACAAGGCGCA+AGG - chr1_4:11488652-11488671 Msa0150210:intron 55.0%
!! CGCAAGGGAAAGGGTGCTTT+GGG - chr1_4:11488668-11488687 Msa0150210:intron 55.0%
AAGCTGGAGACAAGGGACTC+AGG - chr1_4:11489493-11489512 Msa0150210:intron 55.0%
CCTTGCGCCTTGTCATAGGT+TGG + chr1_4:11488655-11488674 None:intergenic 55.0%
CCAACCTATGACAAGGCGCA+AGG - chr1_4:11488652-11488671 Msa0150210:intron 55.0%
!! CGCAAGGGAAAGGGTGCTTT+GGG - chr1_4:11488668-11488687 Msa0150210:intron 55.0%
AAGCTGGAGACAAGGGACTC+AGG - chr1_4:11489493-11489512 Msa0150210:intron 55.0%
!! GCGCAAGGGAAAGGGTGCTT+TGG - chr1_4:11488667-11488686 Msa0150210:intron 60.0%
AGGGACTCAGGCTTGCAGAC+TGG - chr1_4:11489505-11489524 Msa0150210:intron 60.0%
TTGCAGACTGGTGACCCAGC+TGG - chr1_4:11489517-11489536 Msa0150210:intron 60.0%
TGCAGACTGGTGACCCAGCT+GGG - chr1_4:11489518-11489537 Msa0150210:intron 60.0%
CAGCAAGGGTGAACCCAGCT+GGG + chr1_4:11489534-11489553 None:intergenic 60.0%
TCAGCAAGGGTGAACCCAGC+TGG + chr1_4:11489535-11489554 None:intergenic 60.0%
!! GCGCAAGGGAAAGGGTGCTT+TGG - chr1_4:11488667-11488686 Msa0150210:intron 60.0%
AGGGACTCAGGCTTGCAGAC+TGG - chr1_4:11489505-11489524 Msa0150210:intron 60.0%
TTGCAGACTGGTGACCCAGC+TGG - chr1_4:11489517-11489536 Msa0150210:intron 60.0%
TGCAGACTGGTGACCCAGCT+GGG - chr1_4:11489518-11489537 Msa0150210:intron 60.0%
CAGCAAGGGTGAACCCAGCT+GGG + chr1_4:11489534-11489553 None:intergenic 60.0%
TCAGCAAGGGTGAACCCAGC+TGG + chr1_4:11489535-11489554 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 11488075 11489985 11488075 ID=Msa0150210;Name=Msa0150210
chr1_4 mRNA 11488075 11489985 11488075 ID=Msa0150210-mRNA-1;Parent=Msa0150210;Name=Msa0150210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=142|1|1|1|1|1|3|352|130
chr1_4 exon 11488075 11488654 11488075 ID=Msa0150210-mRNA-1:exon:4759;Parent=Msa0150210-mRNA-1
chr1_4 exon 11489333 11489416 11489333 ID=Msa0150210-mRNA-1:exon:4758;Parent=Msa0150210-mRNA-1
chr1_4 exon 11489763 11489985 11489763 ID=Msa0150210-mRNA-1:exon:4757;Parent=Msa0150210-mRNA-1
chr1_4 five_prime_UTR 11489844 11489985 11489844 ID=Msa0150210-mRNA-1:five_prime_utr;Parent=Msa0150210-mRNA-1
chr1_4 CDS 11489763 11489843 11489763 ID=Msa0150210-mRNA-1:cds;Parent=Msa0150210-mRNA-1
chr1_4 CDS 11489333 11489416 11489333 ID=Msa0150210-mRNA-1:cds;Parent=Msa0150210-mRNA-1
chr1_4 CDS 11488427 11488654 11488427 ID=Msa0150210-mRNA-1:cds;Parent=Msa0150210-mRNA-1
chr1_4 three_prime_UTR 11488075 11488426 11488075 ID=Msa0150210-mRNA-1:three_prime_utr;Parent=Msa0150210-mRNA-1
Gene Sequence

>Msa0150210

ATGGCAACCTCTATGATGACAACTTTGCCTCAATTCACTGGTCTTAGACCACAACTCAAACCTTCTCCTATCCAGGGTTTGGTAGCTGCCCAACCTATGACAAGGCGCAAGGGAAAGGGTGCTTTGGGAGTTCGTTGTGACTTCATTGGTTCATCCACTAATGTGATTATGGTGGCATCTACAACCCTAATGTTGTTTGCTGGAAGATTTGGATTGGCTCCATCAGCAAACAGGAAAGCAACAGCAGGACTAAAGCTGGAGACAAGGGACTCAGGCTTGCAGACTGGTGACCCAGCTGGGTTCACCCTTGCTGATACTTTGGCCTGTGGAACTGTTGGACACATCATTGGTGTTGGTGTTGTTCTTGGTCTTAAGAACATTGGTGCATTGTAA

Protein sequence

>Msa0150210

MATSMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRCDFIGSSTNVIMVASTTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGVGVVLGLKNIGAL*