AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175900 MtrunA17_Chr1g0197371 92.208 462 11 1 1 462 1 437 0.0 876
Msa0175900 MtrunA17_Chr8g0334691 39.755 327 166 5 114 436 2 301 1.17e-67 218
Msa0175900 MtrunA17_Chr1g0187751 37.571 354 189 5 92 441 3 328 3.18e-67 218
Msa0175900 MtrunA17_Chr1g0167651 37.006 354 191 5 92 441 3 328 1.16e-65 214
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175900 AT5G58330.2 79.446 433 62 3 32 462 35 442 0.0 693
Msa0175900 AT5G58330.1 79.724 434 60 4 32 462 35 443 0.0 692
Msa0175900 AT5G58330.3 83.008 359 35 2 105 462 1 334 0.0 603
Msa0175900 AT5G56720.1 37.822 349 186 3 92 436 42 363 2.04e-66 218
Msa0175900 AT1G04410.1 38.177 351 182 5 92 436 3 324 1.61e-65 214
Msa0175900 AT5G43330.1 38.177 351 182 5 92 436 3 324 9.56e-65 212

Find 158 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATGCTGACGAGCTTTA+TGG 0.132573 1_4:+62042456 None:intergenic
TACGAGACATTATTGGATTT+TGG 0.133848 1_4:+62047319 None:intergenic
TTCTTCTTACGAGACATTAT+TGG 0.191154 1_4:+62047312 None:intergenic
TTCCAGCTAAATTGCATATT+TGG 0.196880 1_4:+62042535 None:intergenic
CCTATTGCTCTGAAATTATT+AGG 0.203572 1_4:-62045000 Msa0175900:CDS
TTCTTGAATTCTAAGATTCT+TGG 0.206833 1_4:-62047018 Msa0175900:five_prime_UTR
GCGGCTTTGCTAGACATAAA+TGG 0.224890 1_4:-62044691 Msa0175900:CDS
AAGTGTCAAATATGACAATA+TGG 0.242700 1_4:-62044188 Msa0175900:CDS
AATAATGGTTATGTAATAAA+AGG 0.243255 1_4:-62042876 Msa0175900:three_prime_UTR
TTTATGAAGAAGTTTCTAAA+AGG 0.247820 1_4:+62047091 None:intergenic
AATTCTAAGATTCTTGGATA+TGG 0.255559 1_4:-62047012 Msa0175900:exon
GACGGGCAACCCATCGATTC+TGG 0.258257 1_4:+62044125 None:intergenic
GCAGACAGAAGCTGAGTTAT+TGG 0.262024 1_4:-62043155 Msa0175900:intron
TTCAGAGCAATAGGTTGATT+TGG 0.265247 1_4:+62045009 None:intergenic
CTGCCTTACCTATGATTTGA+AGG 0.303691 1_4:-62046680 Msa0175900:CDS
CCTAATAATTTCAGAGCAAT+AGG 0.307670 1_4:+62045000 None:intergenic
CAAGCTTCGTAACTAGAAAT+AGG 0.308916 1_4:+62042414 None:intergenic
GCAGAATGGGCTTTGCTAAT+AGG 0.308960 1_4:-62044745 Msa0175900:CDS
CGTAGAAGACACCTGCCTTC+AGG 0.314755 1_4:+62044214 None:intergenic
TGAATGTCAAAGCAGATATA+TGG 0.326000 1_4:-62042925 Msa0175900:three_prime_UTR
TATACCACTGGAAATCCTTA+TGG 0.344085 1_4:-62043531 Msa0175900:CDS
AATGGTAATTAATTTCTTCC+AGG 0.347857 1_4:+62045206 None:intergenic
ACACACACATGGATAACTTT+GGG 0.349611 1_4:+62042682 None:intergenic
AAGTGATCAAGGATCATAAA+TGG 0.368193 1_4:-62044098 Msa0175900:CDS
CAATATTTACCTCGCCGGTT+AGG 0.371646 1_4:+62043110 None:intergenic
AACCATTATTCTACATCAAT+TGG 0.372547 1_4:+62042889 None:intergenic
TTGGTCCTTACGTTTAATAT+AGG 0.383719 1_4:+62042554 None:intergenic
ATAATGGTTATGTAATAAAA+GGG 0.384387 1_4:-62042875 Msa0175900:three_prime_UTR
GCAAAGCCCATTCTGCATCT+TGG 0.385116 1_4:+62044752 None:intergenic
GAATGAAATTACGTATTTGT+TGG 0.387266 1_4:+62047353 None:intergenic
TTGATGAAGAGAAGTGTAGA+AGG 0.388912 1_4:+62047164 None:intergenic
TACCAATTGATGTAGAATAA+TGG 0.396473 1_4:-62042891 Msa0175900:three_prime_UTR
AAAGCCGCACGCTCCATTCC+AGG 0.399549 1_4:+62044706 None:intergenic
ATTAATTACCATTGCAGTCT+CGG 0.405725 1_4:-62045196 Msa0175900:CDS
GTAGAAGACACCTGCCTTCA+GGG 0.407624 1_4:+62044215 None:intergenic
CACCTTGAAAAGTAGATGAT+TGG 0.408340 1_4:+62045155 None:intergenic
AATTATTGTGTTCTACAAGA+TGG 0.410425 1_4:-62042376 Msa0175900:three_prime_UTR
GGATTTGAAATACAAGTATA+AGG 0.412323 1_4:+62047222 None:intergenic
ATTCTGGCATTTAAGAAGTC+AGG 0.412554 1_4:+62044141 None:intergenic
CTTGAAACTTTCTAAATGTA+GGG 0.413682 1_4:-62042590 Msa0175900:three_prime_UTR
GTATTTACTTGATATAGAAT+TGG 0.414143 1_4:-62043789 Msa0175900:CDS
AACACACACATGGATAACTT+TGG 0.419395 1_4:+62042681 None:intergenic
CGGCTTTGCTAGACATAAAT+GGG 0.422655 1_4:-62044690 Msa0175900:CDS
ATTGCAGTCTCGGGTGCTGC+TGG 0.423582 1_4:-62045186 Msa0175900:CDS
AAATGTGTGGCTCACCTAAC+CGG 0.423595 1_4:-62043124 Msa0175900:CDS
TTCCTACTCCCGAGGGTGAT+TGG 0.424558 1_4:-62043853 Msa0175900:CDS
TAACTCGTTTAGATGAGAAC+AGG 0.428132 1_4:-62044349 Msa0175900:CDS
TTCTTAAATGCCAGAATCGA+TGG 0.429266 1_4:-62044135 Msa0175900:CDS
ATCCTTGATCACTTCTTTGA+CGG 0.429838 1_4:+62044107 None:intergenic
AATGAAATTACGTATTTGTT+GGG 0.433276 1_4:+62047354 None:intergenic
ACTTGAAACTTTCTAAATGT+AGG 0.440684 1_4:-62042591 Msa0175900:three_prime_UTR
AGTGTCAAATATGACAATAT+GGG 0.441799 1_4:-62044187 Msa0175900:CDS
TTCAAGAAACACTAAGTTTG+TGG 0.443011 1_4:+62047033 None:intergenic
CAAGGATCATAAATGGTTAG+AGG 0.443116 1_4:-62044091 Msa0175900:CDS
TGAGAACAGGGCAAAATGTC+AGG 0.444147 1_4:-62044336 Msa0175900:intron
TATTAGCATTGATCCTTATG+AGG 0.445684 1_4:-62044779 Msa0175900:CDS
GCATCTTGGAACACCTCATA+AGG 0.449712 1_4:+62044766 None:intergenic
GGTTAATTGTGTTTGAGATA+AGG 0.450252 1_4:+62047420 None:intergenic
AAGAAAATGAGAAAAGATAT+AGG 0.450388 1_4:+62047118 None:intergenic
ACTCACAGCCTTCAAATCAT+AGG 0.450924 1_4:+62046672 None:intergenic
GGATCCTGTGTCTGTACTGC+TGG 0.455969 1_4:+62046733 None:intergenic
GAAATACAAGTATAAGGCTA+TGG 0.457061 1_4:+62047228 None:intergenic
TCCTTGATCACTTCTTTGAC+GGG 0.461687 1_4:+62044108 None:intergenic
TAGCAATCAGGTTTACTCTT+GGG 0.464151 1_4:+62046712 None:intergenic
GACCAAATATGCAATTTAGC+TGG 0.466368 1_4:-62042537 Msa0175900:three_prime_UTR
ATATCTTCAGCTATTCCATA+AGG 0.466564 1_4:+62043516 None:intergenic
TTAGCTAGTTACATTTCTCC+TGG 0.468553 1_4:+62042953 None:intergenic
TTAATTACCATTGCAGTCTC+GGG 0.472464 1_4:-62045195 Msa0175900:CDS
ATAGCAATCAGGTTTACTCT+TGG 0.474424 1_4:+62046711 None:intergenic
TTATGAAGAAGTTTCTAAAA+GGG 0.474780 1_4:+62047092 None:intergenic
TGCTCTGAAATTATTAGGAT+CGG 0.475625 1_4:-62044995 Msa0175900:CDS
CAGAAGACACCATAGCAATC+AGG 0.484246 1_4:+62046700 None:intergenic
GGTGCAAAGCCTCGAGGACC+TGG 0.489357 1_4:-62044724 Msa0175900:CDS
CAAGCTGACTTTGTATTGCA+AGG 0.493060 1_4:+62044503 None:intergenic
CACAACTCTCATTTCTCTCT+AGG 0.499049 1_4:-62046938 Msa0175900:CDS
ATTGTAATCTTAACAACGTA+AGG 0.500539 1_4:-62042619 Msa0175900:three_prime_UTR
GGTGTTCCAAGATGCAGAAT+GGG 0.508422 1_4:-62044758 Msa0175900:CDS
CTCTTTATTTCCTTTGCTGA+GGG 0.509334 1_4:-62044809 Msa0175900:CDS
GCTCGTCAGCATGTAATAAG+TGG 0.510640 1_4:-62042449 Msa0175900:three_prime_UTR
AGGTGTTCCAAGATGCAGAA+TGG 0.523630 1_4:-62044759 Msa0175900:CDS
CAGTATGCCGTGTCGATCAA+AGG 0.525529 1_4:-62043487 Msa0175900:intron
CAATGCCAGGTGTATACCAC+TGG 0.532941 1_4:-62043543 Msa0175900:intron
GCCCTTTCCGTCATATTCTG+AGG 0.533600 1_4:-62042735 Msa0175900:three_prime_UTR
AGTAAACATCATCCACAACT+TGG 0.534566 1_4:+62047280 None:intergenic
CCTTGGCTAATTTCTGTCGT+AGG 0.542771 1_4:+62043338 None:intergenic
ACTCTTTATTTCCTTTGCTG+AGG 0.543885 1_4:-62044810 Msa0175900:CDS
AGGTCATTGCAAGCTCTTGA+AGG 0.545237 1_4:-62044970 Msa0175900:intron
ACATTTAGAAAGTTTCAAGT+TGG 0.545610 1_4:+62042594 None:intergenic
AGGAAGAGGAGACAAAATCC+TGG 0.546374 1_4:-62045224 Msa0175900:CDS
AAAGTACAGTGATGGTGCCT+AGG 0.547922 1_4:+62046909 None:intergenic
AAATACAAGTATAAGGCTAT+GGG 0.548052 1_4:+62047229 None:intergenic
AAGCTGACTTTGTATTGCAA+GGG 0.548231 1_4:+62044504 None:intergenic
ACCTCAGAATATGACGGAAA+GGG 0.548502 1_4:+62042734 None:intergenic
TTGTTTGATTGTTAGAGAGG+TGG 0.548629 1_4:-62043956 Msa0175900:intron
GGCCGCAATATTTACCTCGC+CGG 0.551341 1_4:+62043105 None:intergenic
TTACATTTCTCCTGGGAGCA+TGG 0.551522 1_4:+62042961 None:intergenic
GCCCGTCAAAGAAGTGATCA+AGG 0.552804 1_4:-62044109 Msa0175900:CDS
TAAAACCTATATTAAACGTA+AGG 0.553419 1_4:-62042559 Msa0175900:three_prime_UTR
CCTGGGAGCATGGTATCACC+AGG 0.553980 1_4:+62042971 None:intergenic
GAAACCTAAAATAAACGTAA+AGG 0.554388 1_4:+62042824 None:intergenic
TTCTCTCTAGGACTCTTCCT+AGG 0.556403 1_4:-62046926 Msa0175900:CDS
CAGCCTTCAAATCATAGGTA+AGG 0.557569 1_4:+62046677 None:intergenic
CATCTAAACGAGTTAAAGCA+TGG 0.559378 1_4:+62044357 None:intergenic
AGGAATGATCAAAGATCGTA+TGG 0.561984 1_4:+62043871 None:intergenic
CAATGTGTAGCTAGCCCTGA+AGG 0.566385 1_4:-62044229 Msa0175900:intron
CGCTCCATTCCAGGTCCTCG+AGG 0.567002 1_4:+62044715 None:intergenic
TAGCTAGTTACATTTCTCCT+GGG 0.567890 1_4:+62042954 None:intergenic
ATTGCTGTTTGTGATCTACC+TGG 0.568507 1_4:-62042989 Msa0175900:CDS
TGTAATAAAAGGGGAAAACA+TGG 0.575545 1_4:-62042865 Msa0175900:three_prime_UTR
GTGTAGCTAGCCCTGAAGGC+AGG 0.575889 1_4:-62044225 Msa0175900:intron
CCTGGTGATACCATGCTCCC+AGG 0.576358 1_4:-62042971 Msa0175900:CDS
GCATGTTGAGTTCTGTGAAG+TGG 0.576492 1_4:+62046882 None:intergenic
TCTTAAATGCCAGAATCGAT+GGG 0.577340 1_4:-62044134 Msa0175900:CDS
TTTGATCATTCCTACTCCCG+AGG 0.577680 1_4:-62043861 Msa0175900:CDS
GTATGTGGGAACAAAGAGGA+TGG 0.578347 1_4:+62047201 None:intergenic
AAGAGTAAACCTGATTGCTA+TGG 0.579050 1_4:-62046709 Msa0175900:CDS
TACCTCAGAATATGACGGAA+AGG 0.580063 1_4:+62042733 None:intergenic
CAACAATGCAGGTGTTGCGA+TGG 0.584262 1_4:-62044842 Msa0175900:intron
CTCGTCAGCATGTAATAAGT+GGG 0.587173 1_4:-62042448 Msa0175900:three_prime_UTR
GACAGAAGCTGAGTTATTGG+CGG 0.587741 1_4:-62043152 Msa0175900:CDS
CACACACATGGATAACTTTG+GGG 0.588099 1_4:+62042683 None:intergenic
AACCAATCACCCTCGGGAGT+AGG 0.588155 1_4:+62043851 None:intergenic
AAAGCCTCGAGGACCTGGAA+TGG 0.591306 1_4:-62044719 Msa0175900:CDS
TGCAGGTGTTGCGATGGAGT+TGG 0.591881 1_4:-62044836 Msa0175900:intron
TGAAATTATTAGGATCGGAA+AGG 0.596316 1_4:-62044990 Msa0175900:CDS
TTCTGGCATTTAAGAAGTCA+GGG 0.596329 1_4:+62044142 None:intergenic
AATGTCAAAGTTATAGTCGT+GGG 0.603734 1_4:-62044530 Msa0175900:CDS
ATAACAACTTCCCTCAGCAA+AGG 0.605246 1_4:+62044799 None:intergenic
AGTAGAAAACCAATCACCCT+CGG 0.605810 1_4:+62043844 None:intergenic
TTGAAACTTTCTAAATGTAG+GGG 0.608954 1_4:-62042589 Msa0175900:three_prime_UTR
AGGTGTTGCGATGGAGTTGG+AGG 0.609283 1_4:-62044833 Msa0175900:CDS
GTGTCAAATATGACAATATG+GGG 0.610500 1_4:-62044186 Msa0175900:CDS
TAATGGTTATGTAATAAAAG+GGG 0.611749 1_4:-62042874 Msa0175900:three_prime_UTR
GGGAAACCACTCAACTACTC+AGG 0.614384 1_4:-62044166 Msa0175900:CDS
GTAGAAAACCAATCACCCTC+GGG 0.619646 1_4:+62043845 None:intergenic
AACCCCTAAAAGAAAACATG+TGG 0.620050 1_4:-62047401 Msa0175900:five_prime_UTR
AACTCGTTTAGATGAGAACA+GGG 0.621950 1_4:-62044348 Msa0175900:CDS
TTGTAATCTTAACAACGTAA+GGG 0.625187 1_4:-62042618 Msa0175900:three_prime_UTR
ATGAAATTACGTATTTGTTG+GGG 0.626394 1_4:+62047355 None:intergenic
TTGATCATTCCTACTCCCGA+GGG 0.629643 1_4:-62043860 Msa0175900:CDS
CAGGGACCTGAGTAGTTGAG+TGG 0.629977 1_4:+62044160 None:intergenic
CAATGTCAAAGTTATAGTCG+TGG 0.630469 1_4:-62044531 Msa0175900:CDS
TTCCGTTTAAAACGTCCATG+TGG 0.637434 1_4:+62042650 None:intergenic
AGCAGCACCCGAGACTGCAA+TGG 0.640432 1_4:+62045188 None:intergenic
CTATATCAAGTAAATACACA+AGG 0.642591 1_4:+62043795 None:intergenic
GGCGCCAGCAGTACAGACAC+AGG 0.643318 1_4:-62046737 Msa0175900:CDS
GAGGGTATGTGGGAACAAAG+AGG 0.646699 1_4:+62047197 None:intergenic
TGGTGATTATGAACTTGTCA+AGG 0.654428 1_4:-62043380 Msa0175900:CDS
ACACTTGCCTTTGATCGACA+CGG 0.659090 1_4:+62043480 None:intergenic
AGAGTTACCTCAGAATATGA+CGG 0.661366 1_4:+62042728 None:intergenic
ACACACATGGATAACTTTGG+GGG 0.678822 1_4:+62042684 None:intergenic
CTAATAGGTGCAAAGCCTCG+AGG 0.681429 1_4:-62044730 Msa0175900:CDS
AGGACCTGGAATGGAGCGTG+CGG 0.691301 1_4:-62044710 Msa0175900:CDS
TATTCCATAAGGATTTCCAG+TGG 0.701953 1_4:+62043527 None:intergenic
GTGGTGCTAAAGTACAGTGA+TGG 0.702787 1_4:+62046901 None:intergenic
CCTACGACAGAAATTAGCCA+AGG 0.707374 1_4:-62043338 Msa0175900:intron
TGTGGCTCACCTAACCGGCG+AGG 0.716043 1_4:-62043119 Msa0175900:intron
ACAGGGAAAAGCACTCAATG+CGG 0.748480 1_4:-62044564 Msa0175900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAAAAGTTTTATTCATTA+GGG - chr1_4:62046277-62046296 Msa0175900:intron 15.0%
!! AATAATGGTTATGTAATAAA+AGG - chr1_4:62046807-62046826 Msa0175900:intron 15.0%
!! ATAATGGTTATGTAATAAAA+GGG - chr1_4:62046808-62046827 Msa0175900:intron 15.0%
!! AATGAAATTACGTATTTGTT+GGG + chr1_4:62042332-62042351 None:intergenic 20.0%
!! AAGAAAATGAGAAAAGATAT+AGG + chr1_4:62042568-62042587 None:intergenic 20.0%
!!! TTATGAAGAAGTTTCTAAAA+GGG + chr1_4:62042594-62042613 None:intergenic 20.0%
!! TTTATGAAGAAGTTTCTAAA+AGG + chr1_4:62042595-62042614 None:intergenic 20.0%
!! TGGTTAATATGTTCTTTAAT+TGG - chr1_4:62043128-62043147 Msa0175900:CDS 20.0%
!! ATGTTCTTTAATTGGATATT+TGG - chr1_4:62043136-62043155 Msa0175900:CDS 20.0%
!! TGTTCTTTAATTGGATATTT+GGG - chr1_4:62043137-62043156 Msa0175900:CDS 20.0%
!! CATCTATATATACAATGATT+AGG + chr1_4:62043208-62043227 None:intergenic 20.0%
!! ACATTATTCAGTGTAATTAT+AGG - chr1_4:62043302-62043321 Msa0175900:intron 20.0%
!! TCATTAATTCTTATTCTTAC+TGG - chr1_4:62043384-62043403 Msa0175900:CDS 20.0%
!!! AACTGCAATTTTAAATTAAC+AGG + chr1_4:62043474-62043493 None:intergenic 20.0%
!!! TGTTAATTTAAAATTGCAGT+TGG - chr1_4:62043473-62043492 Msa0175900:intron 20.0%
!!! GGTTCCAAAATTTAAATTTT+TGG - chr1_4:62043769-62043788 Msa0175900:CDS 20.0%
!!! CTCACCAAAAATTTAAATTT+TGG + chr1_4:62043776-62043795 None:intergenic 20.0%
!! ATATACTATATAGATAGAAG+TGG - chr1_4:62043967-62043986 Msa0175900:intron 20.0%
!! ACTAAATCATTTGTTTCATT+TGG - chr1_4:62044354-62044373 Msa0175900:CDS 20.0%
!! AACATAAAAAATTAACTCAG+TGG + chr1_4:62044628-62044647 None:intergenic 20.0%
!!! TATAGTTAACTGTCTTTTAT+AGG + chr1_4:62045069-62045088 None:intergenic 20.0%
!!! AAATTTTTTGCAGGAATATT+TGG + chr1_4:62045306-62045325 None:intergenic 20.0%
!!! TTCTGTTATTTCTTCTTTTT+TGG + chr1_4:62045411-62045430 None:intergenic 20.0%
!! CAAAAGGTAAAATTTGTAAT+TGG - chr1_4:62045635-62045654 Msa0175900:intron 20.0%
!! AATCCATGTAATTAAATATG+TGG - chr1_4:62045658-62045677 Msa0175900:intron 20.0%
!! ATTCCACATATTTAATTACA+TGG + chr1_4:62045664-62045683 None:intergenic 20.0%
!! TATTGTTAACTTATTACACA+AGG + chr1_4:62045702-62045721 None:intergenic 20.0%
!! GTATTTACTTGATATAGAAT+TGG - chr1_4:62045894-62045913 Msa0175900:intron 20.0%
!! ATTAATATATTCACCAATGT+CGG - chr1_4:62045963-62045982 Msa0175900:intron 20.0%
!!! AACTTTAAAGCTCAATTAAA+AGG - chr1_4:62046042-62046061 Msa0175900:intron 20.0%
!!! AATAAAACTTTTTGTCATAG+AGG + chr1_4:62046272-62046291 None:intergenic 20.0%
!!! GACAAAAAGTTTTATTCATT+AGG - chr1_4:62046276-62046295 Msa0175900:intron 20.0%
!! CGATAACAATTTCATATATT+TGG - chr1_4:62046398-62046417 Msa0175900:intron 20.0%
!! TAATGGTTATGTAATAAAAG+GGG - chr1_4:62046809-62046828 Msa0175900:intron 20.0%
!!! GTTTAATATAGGTTTTAAGT+TGG + chr1_4:62047121-62047140 None:intergenic 20.0%
!! TAAAACCTATATTAAACGTA+AGG - chr1_4:62047124-62047143 Msa0175900:five_prime_UTR 20.0%
!! TTTCCACATGTTTTCTTTTA+GGG + chr1_4:62042288-62042307 None:intergenic 25.0%
!! TTTTCCACATGTTTTCTTTT+AGG + chr1_4:62042289-62042308 None:intergenic 25.0%
!! ATGAAATTACGTATTTGTTG+GGG + chr1_4:62042331-62042350 None:intergenic 25.0%
! GAATGAAATTACGTATTTGT+TGG + chr1_4:62042333-62042352 None:intergenic 25.0%
! AAATACAAGTATAAGGCTAT+GGG + chr1_4:62042457-62042476 None:intergenic 25.0%
!! GGATTTGAAATACAAGTATA+AGG + chr1_4:62042464-62042483 None:intergenic 25.0%
!!! TTCTTGAATTCTAAGATTCT+TGG - chr1_4:62042665-62042684 Msa0175900:three_prime_UTR 25.0%
!!! AATTCTAAGATTCTTGGATA+TGG - chr1_4:62042671-62042690 Msa0175900:three_prime_UTR 25.0%
! ATAAATACAGTAGAGTAACA+AGG + chr1_4:62043040-62043059 None:intergenic 25.0%
!! ATAATGTTCTTGAAGCTTTT+TGG + chr1_4:62044110-62044129 None:intergenic 25.0%
! AAAAGCTTCAAGAACATTAT+TGG - chr1_4:62044110-62044129 Msa0175900:CDS 25.0%
!!! AAATATTTGTTGGAAGCATT+AGG + chr1_4:62044193-62044212 None:intergenic 25.0%
!! GATTTTCCTCAAATATTTGT+TGG + chr1_4:62044203-62044222 None:intergenic 25.0%
! ATTGTAACAAGTATCCTTTA+TGG - chr1_4:62044232-62044251 Msa0175900:intron 25.0%
! TTGTAACAAGTATCCTTTAT+GGG - chr1_4:62044233-62044252 Msa0175900:intron 25.0%
! AATACCATGGAAAATTTGAA+AGG + chr1_4:62044383-62044402 None:intergenic 25.0%
! CTTAACATTAAGTAATACCA+TGG + chr1_4:62044396-62044415 None:intergenic 25.0%
!! ATATACCAATTTGTTTCGTT+TGG - chr1_4:62044423-62044442 Msa0175900:intron 25.0%
! AATGGTAATTAATTTCTTCC+AGG + chr1_4:62044480-62044499 None:intergenic 25.0%
!!! TTTGAAAAGCATCAGTAATA+TGG + chr1_4:62044806-62044825 None:intergenic 25.0%
! AAGTGTCAAATATGACAATA+TGG - chr1_4:62045495-62045514 Msa0175900:intron 25.0%
! AGTGTCAAATATGACAATAT+GGG - chr1_4:62045496-62045515 Msa0175900:intron 25.0%
! TTATTGTTTGATTGTTAGAG+AGG - chr1_4:62045724-62045743 Msa0175900:intron 25.0%
! CTATATCAAGTAAATACACA+AGG + chr1_4:62045891-62045910 None:intergenic 25.0%
! TTAATATATTCACCAATGTC+GGG - chr1_4:62045964-62045983 Msa0175900:intron 25.0%
! CAAAGACAAAAACAGTTTAT+AGG + chr1_4:62046068-62046087 None:intergenic 25.0%
! AAGCAATTCAGAAATCATAA+AGG + chr1_4:62046244-62046263 None:intergenic 25.0%
! ATTTGTATTCTCTCTTATCA+GGG - chr1_4:62046670-62046689 Msa0175900:intron 25.0%
! TACCAATTGATGTAGAATAA+TGG - chr1_4:62046792-62046811 Msa0175900:intron 25.0%
! AACCATTATTCTACATCAAT+TGG + chr1_4:62046797-62046816 None:intergenic 25.0%
! GAAACCTAAAATAAACGTAA+AGG + chr1_4:62046862-62046881 None:intergenic 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG - chr1_4:62046866-62046885 Msa0175900:CDS 25.0%
! ATTGTAATCTTAACAACGTA+AGG - chr1_4:62047064-62047083 Msa0175900:five_prime_UTR 25.0%
! TTGTAATCTTAACAACGTAA+GGG - chr1_4:62047065-62047084 Msa0175900:five_prime_UTR 25.0%
!! ACATTTAGAAAGTTTCAAGT+TGG + chr1_4:62047092-62047111 None:intergenic 25.0%
! ACTTGAAACTTTCTAAATGT+AGG - chr1_4:62047092-62047111 Msa0175900:five_prime_UTR 25.0%
! CTTGAAACTTTCTAAATGTA+GGG - chr1_4:62047093-62047112 Msa0175900:five_prime_UTR 25.0%
! TTGAAACTTTCTAAATGTAG+GGG - chr1_4:62047094-62047113 Msa0175900:five_prime_UTR 25.0%
! AATTATTGTGTTCTACAAGA+TGG - chr1_4:62047307-62047326 Msa0175900:five_prime_UTR 25.0%
! GGTTAATTGTGTTTGAGATA+AGG + chr1_4:62042266-62042285 None:intergenic 30.0%
! TTCCACATGTTTTCTTTTAG+GGG + chr1_4:62042287-62042306 None:intergenic 30.0%
! TTGGATTTTGGATGAATGAA+TGG + chr1_4:62042355-62042374 None:intergenic 30.0%
! TACGAGACATTATTGGATTT+TGG + chr1_4:62042367-62042386 None:intergenic 30.0%
TTCTTCTTACGAGACATTAT+TGG + chr1_4:62042374-62042393 None:intergenic 30.0%
GAAGATAAAAAACCAAGTTG+TGG - chr1_4:62042391-62042410 Msa0175900:three_prime_UTR 30.0%
GAAATACAAGTATAAGGCTA+TGG + chr1_4:62042458-62042477 None:intergenic 30.0%
AAGTGTAGAAGGAAGAAAAA+AGG + chr1_4:62042511-62042530 None:intergenic 30.0%
TTCAAGAAACACTAAGTTTG+TGG + chr1_4:62042653-62042672 None:intergenic 30.0%
!! AAGAGTAAAGTTACTGACTT+TGG + chr1_4:62042849-62042868 None:intergenic 30.0%
TTTGTATCAATTCAGCTTCT+TGG - chr1_4:62042881-62042900 Msa0175900:three_prime_UTR 30.0%
TTGTATCAATTCAGCTTCTT+GGG - chr1_4:62042882-62042901 Msa0175900:three_prime_UTR 30.0%
CTTGCTTTGTATTCAACTTA+TGG - chr1_4:62043087-62043106 Msa0175900:intron 30.0%
! AGAATTTTGTTAAGGAGGAT+TGG - chr1_4:62043163-62043182 Msa0175900:intron 30.0%
TCTCAAATTATTATCCGTGT+CGG + chr1_4:62043277-62043296 None:intergenic 30.0%
ATTGCAGTTGGTTAATATAC+AGG - chr1_4:62043485-62043504 Msa0175900:intron 30.0%
TTGCAGTTGGTTAATATACA+GGG - chr1_4:62043486-62043505 Msa0175900:intron 30.0%
! ATCTGAAGCATATTGTGATT+TGG - chr1_4:62043746-62043765 Msa0175900:intron 30.0%
! TCTGAAGCATATTGTGATTT+GGG - chr1_4:62043747-62043766 Msa0175900:intron 30.0%
GTGATCTTCAATTACATGTA+CGG + chr1_4:62043843-62043862 None:intergenic 30.0%
TGAAGATCACACTACAATTA+AGG - chr1_4:62043853-62043872 Msa0175900:CDS 30.0%
AGATAGAAGTGGAACTAAAT+TGG - chr1_4:62043978-62043997 Msa0175900:intron 30.0%
ATGCTTCCAACAAATATTTG+AGG - chr1_4:62044194-62044213 Msa0175900:CDS 30.0%
! TAGCAGTTTAGGATCAAATA+TGG - chr1_4:62044265-62044284 Msa0175900:intron 30.0%
TGTATCTAGAGGAGTTAATA+TGG + chr1_4:62044316-62044335 None:intergenic 30.0%
!! CAAATGATTTAGTTCTGAGA+CGG + chr1_4:62044347-62044366 None:intergenic 30.0%
ATTAATTACCATTGCAGTCT+CGG - chr1_4:62044487-62044506 Msa0175900:intron 30.0%
!! TTCCAATCATCTACTTTTCA+AGG - chr1_4:62044526-62044545 Msa0175900:CDS 30.0%
!!! TTTTTATGTTAGCTTGCATC+TGG - chr1_4:62044638-62044657 Msa0175900:intron 30.0%
CCTAATAATTTCAGAGCAAT+AGG + chr1_4:62044686-62044705 None:intergenic 30.0%
!! CCTATTGCTCTGAAATTATT+AGG - chr1_4:62044683-62044702 Msa0175900:CDS 30.0%
!! TGCTCTGAAATTATTAGGAT+CGG - chr1_4:62044688-62044707 Msa0175900:CDS 30.0%
TGAAATTATTAGGATCGGAA+AGG - chr1_4:62044693-62044712 Msa0175900:CDS 30.0%
! TATATGAAAATGCCCGTTTT+TGG - chr1_4:62044756-62044775 Msa0175900:CDS 30.0%
ATGTTCTAATTCAACAATGC+AGG - chr1_4:62044830-62044849 Msa0175900:CDS 30.0%
!! TATTAGCATTGATCCTTATG+AGG - chr1_4:62044904-62044923 Msa0175900:intron 30.0%
AATGTCAAAGTTATAGTCGT+GGG - chr1_4:62045153-62045172 Msa0175900:intron 30.0%
TAGCAACATTAGGAACAATA+AGG + chr1_4:62045234-62045253 None:intergenic 30.0%
CTGCATTAAAATACACATGA+AGG + chr1_4:62045258-62045277 None:intergenic 30.0%
!!! AAAGCATGGAAATTTTTTGC+AGG + chr1_4:62045315-62045334 None:intergenic 30.0%
GTGTCAAATATGACAATATG+GGG - chr1_4:62045497-62045516 Msa0175900:intron 30.0%
AAGTGATCAAGGATCATAAA+TGG - chr1_4:62045585-62045604 Msa0175900:intron 30.0%
GTTCACTGAAAAAGTTCAAA+AGG - chr1_4:62045619-62045638 Msa0175900:intron 30.0%
TGGTGCACTTATTCAAAAAT+GGG - chr1_4:62045747-62045766 Msa0175900:intron 30.0%
ATATCTTCAGCTATTCCATA+AGG + chr1_4:62046170-62046189 None:intergenic 30.0%
!!! AGTTTTATTCATTAGGGAGA+TGG - chr1_4:62046283-62046302 Msa0175900:intron 30.0%
TAATGCATTTACCAATGTTC+AGG + chr1_4:62046476-62046495 None:intergenic 30.0%
CATTTGTATTCTCTCTTATC+AGG - chr1_4:62046669-62046688 Msa0175900:intron 30.0%
TTTGTATTCTCTCTTATCAG+GGG - chr1_4:62046671-62046690 Msa0175900:intron 30.0%
TGAATGTCAAAGCAGATATA+TGG - chr1_4:62046758-62046777 Msa0175900:intron 30.0%
TGTAATAAAAGGGGAAAACA+TGG - chr1_4:62046818-62046837 Msa0175900:intron 30.0%
! ACATGGCTAAATTGCATTTT+TGG - chr1_4:62046835-62046854 Msa0175900:intron 30.0%
!! TGGACCTTTACGTTTATTTT+AGG - chr1_4:62046855-62046874 Msa0175900:CDS 30.0%
TTGGTCCTTACGTTTAATAT+AGG + chr1_4:62047132-62047151 None:intergenic 30.0%
TTCCAGCTAAATTGCATATT+TGG + chr1_4:62047151-62047170 None:intergenic 30.0%
AACCCCTAAAAGAAAACATG+TGG - chr1_4:62042282-62042301 Msa0175900:three_prime_UTR 35.0%
AGTAAACATCATCCACAACT+TGG + chr1_4:62042406-62042425 None:intergenic 35.0%
! AAGAAAAAAGGAGGGTATGT+GGG + chr1_4:62042499-62042518 None:intergenic 35.0%
GTAGAAGGAAGAAAAAAGGA+GGG + chr1_4:62042507-62042526 None:intergenic 35.0%
TGTAGAAGGAAGAAAAAAGG+AGG + chr1_4:62042508-62042527 None:intergenic 35.0%
! TTGATGAAGAGAAGTGTAGA+AGG + chr1_4:62042522-62042541 None:intergenic 35.0%
CTTGACTGAAAAGTAAAAGC+AGG + chr1_4:62042922-62042941 None:intergenic 35.0%
!! TTTACTTTTCAGTCAAGTGC+AGG - chr1_4:62042925-62042944 Msa0175900:three_prime_UTR 35.0%
TAGCAATCAGGTTTACTCTT+GGG + chr1_4:62042974-62042993 None:intergenic 35.0%
ATAGCAATCAGGTTTACTCT+TGG + chr1_4:62042975-62042994 None:intergenic 35.0%
AAGAGTAAACCTGATTGCTA+TGG - chr1_4:62042974-62042993 Msa0175900:CDS 35.0%
! TTGGGAGCAGAATTTTGTTA+AGG - chr1_4:62043155-62043174 Msa0175900:intron 35.0%
! ATTTTGTTAAGGAGGATTGG+TGG - chr1_4:62043166-62043185 Msa0175900:intron 35.0%
! TGTAATTATAGGTGTCGTGT+CGG - chr1_4:62043313-62043332 Msa0175900:intron 35.0%
TAATGACATCCTATGAAGCA+CGG + chr1_4:62043370-62043389 None:intergenic 35.0%
TGGTTAATATACAGGGATAG+AGG - chr1_4:62043493-62043512 Msa0175900:CDS 35.0%
TAATATACAGGGATAGAGGT+CGG - chr1_4:62043497-62043516 Msa0175900:CDS 35.0%
AAACTAAAACTCTGGTATGG+GGG + chr1_4:62043652-62043671 None:intergenic 35.0%
CAAACTAAAACTCTGGTATG+GGG + chr1_4:62043653-62043672 None:intergenic 35.0%
GCAAACTAAAACTCTGGTAT+GGG + chr1_4:62043654-62043673 None:intergenic 35.0%
AGCAAACTAAAACTCTGGTA+TGG + chr1_4:62043655-62043674 None:intergenic 35.0%
CACCTCTCAATCATCATTTA+CGG + chr1_4:62043678-62043697 None:intergenic 35.0%
CACAATTGAGAGACTGTTAA+AGG - chr1_4:62043707-62043726 Msa0175900:intron 35.0%
CTGAAGCATATTGTGATTTG+GGG - chr1_4:62043748-62043767 Msa0175900:intron 35.0%
!! ATTCGAAGCATCGTGTATAT+AGG - chr1_4:62043942-62043961 Msa0175900:CDS 35.0%
CACAAACTGAACAAAAGAGT+AGG + chr1_4:62044038-62044057 None:intergenic 35.0%
!!! GAAGCTTTTTGGCTATCAAT+TGG + chr1_4:62044099-62044118 None:intergenic 35.0%
ATCTAGAGGAGTTAATATGG+AGG + chr1_4:62044313-62044332 None:intergenic 35.0%
! GCATCCTTTCAAATTTTCCA+TGG - chr1_4:62044376-62044395 Msa0175900:CDS 35.0%
ATTGGCCAAACGAAACAAAT+TGG + chr1_4:62044431-62044450 None:intergenic 35.0%
TTAATTACCATTGCAGTCTC+GGG - chr1_4:62044488-62044507 Msa0175900:intron 35.0%
CACCTTGAAAAGTAGATGAT+TGG + chr1_4:62044531-62044550 None:intergenic 35.0%
!! TTTTCAAGGTGAGTGTATCT+TGG - chr1_4:62044540-62044559 Msa0175900:CDS 35.0%
CTAAATTGCATGGCCATTAA+AGG + chr1_4:62044603-62044622 None:intergenic 35.0%
!! TTCAGAGCAATAGGTTGATT+TGG + chr1_4:62044677-62044696 None:intergenic 35.0%
ATACACGCATACTCCAAAAA+CGG + chr1_4:62044772-62044791 None:intergenic 35.0%
! ACTCTTTATTTCCTTTGCTG+AGG - chr1_4:62044873-62044892 Msa0175900:intron 35.0%
! CTCTTTATTTCCTTTGCTGA+GGG - chr1_4:62044874-62044893 Msa0175900:intron 35.0%
! CATAAATGGGCAGATTTTTG+CGG - chr1_4:62045006-62045025 Msa0175900:CDS 35.0%
TATCTTACCATGTGTACAAC+AGG - chr1_4:62045101-62045120 Msa0175900:intron 35.0%
ATCTTACCATGTGTACAACA+GGG - chr1_4:62045102-62045121 Msa0175900:intron 35.0%
CAATGTCAAAGTTATAGTCG+TGG - chr1_4:62045152-62045171 Msa0175900:intron 35.0%
! AAGCTGACTTTGTATTGCAA+GGG + chr1_4:62045182-62045201 None:intergenic 35.0%
ACATGAAGGTTAGCAACATT+AGG + chr1_4:62045244-62045263 None:intergenic 35.0%
CATCTAAACGAGTTAAAGCA+TGG + chr1_4:62045329-62045348 None:intergenic 35.0%
TAACTCGTTTAGATGAGAAC+AGG - chr1_4:62045334-62045353 Msa0175900:intron 35.0%
AACTCGTTTAGATGAGAACA+GGG - chr1_4:62045335-62045354 Msa0175900:intron 35.0%
TTCTGGCATTTAAGAAGTCA+GGG + chr1_4:62045544-62045563 None:intergenic 35.0%
ATTCTGGCATTTAAGAAGTC+AGG + chr1_4:62045545-62045564 None:intergenic 35.0%
TTCTTAAATGCCAGAATCGA+TGG - chr1_4:62045548-62045567 Msa0175900:intron 35.0%
TCTTAAATGCCAGAATCGAT+GGG - chr1_4:62045549-62045568 Msa0175900:intron 35.0%
ATCCTTGATCACTTCTTTGA+CGG + chr1_4:62045579-62045598 None:intergenic 35.0%
CAAGGATCATAAATGGTTAG+AGG - chr1_4:62045592-62045611 Msa0175900:intron 35.0%
TTGTTTGATTGTTAGAGAGG+TGG - chr1_4:62045727-62045746 Msa0175900:intron 35.0%
GTGGTGCACTTATTCAAAAA+TGG - chr1_4:62045746-62045765 Msa0175900:intron 35.0%
GGTGCACTTATTCAAAAATG+GGG - chr1_4:62045748-62045767 Msa0175900:intron 35.0%
AGGAATGATCAAAGATCGTA+TGG + chr1_4:62045815-62045834 None:intergenic 35.0%
TTGCAATTACATACAATGCC+AGG - chr1_4:62046127-62046146 Msa0175900:intron 35.0%
TATACCACTGGAAATCCTTA+TGG - chr1_4:62046152-62046171 Msa0175900:intron 35.0%
TATTCCATAAGGATTTCCAG+TGG + chr1_4:62046159-62046178 None:intergenic 35.0%
TGGTGATTATGAACTTGTCA+AGG - chr1_4:62046303-62046322 Msa0175900:intron 35.0%
TAGCTAGTTACATTTCTCCT+GGG + chr1_4:62046732-62046751 None:intergenic 35.0%
TTAGCTAGTTACATTTCTCC+TGG + chr1_4:62046733-62046752 None:intergenic 35.0%
AGAGTTACCTCAGAATATGA+CGG + chr1_4:62046958-62046977 None:intergenic 35.0%
ACACACACATGGATAACTTT+GGG + chr1_4:62047004-62047023 None:intergenic 35.0%
AACACACACATGGATAACTT+TGG + chr1_4:62047005-62047024 None:intergenic 35.0%
GACCAAATATGCAATTTAGC+TGG - chr1_4:62047146-62047165 Msa0175900:five_prime_UTR 35.0%
CAAGCTTCGTAACTAGAAAT+AGG + chr1_4:62047272-62047291 None:intergenic 35.0%
! GAAGAAAAAAGGAGGGTATG+TGG + chr1_4:62042500-62042519 None:intergenic 40.0%
CACAACTCTCATTTCTCTCT+AGG - chr1_4:62042745-62042764 Msa0175900:three_prime_UTR 40.0%
CTGCCTTACCTATGATTTGA+AGG - chr1_4:62043003-62043022 Msa0175900:intron 40.0%
CAGCCTTCAAATCATAGGTA+AGG + chr1_4:62043009-62043028 None:intergenic 40.0%
ACTCACAGCCTTCAAATCAT+AGG + chr1_4:62043014-62043033 None:intergenic 40.0%
!! GGCTTTAGTGCATGATTTTG+TGG - chr1_4:62043108-62043127 Msa0175900:intron 40.0%
! GGAGCAGAATTTTGTTAAGG+AGG - chr1_4:62043158-62043177 Msa0175900:intron 40.0%
GTGTTCATGTCGGTGTATTA+GGG + chr1_4:62043235-62043254 None:intergenic 40.0%
TAATACACCGACATGAACAC+CGG - chr1_4:62043235-62043254 Msa0175900:intron 40.0%
AACTAAAACTCTGGTATGGG+GGG + chr1_4:62043651-62043670 None:intergenic 40.0%
TACGGAGCAAACTAAAACTC+TGG + chr1_4:62043660-62043679 None:intergenic 40.0%
CTCCGTAAATGATGATTGAG+AGG - chr1_4:62043673-62043692 Msa0175900:intron 40.0%
ATGACTGAAATCGTCTGATG+CGG - chr1_4:62043811-62043830 Msa0175900:CDS 40.0%
CGGTGAATCTTTGTATCTAG+AGG + chr1_4:62044327-62044346 None:intergenic 40.0%
TCCTCTTCCTGTAAACACAT+TGG + chr1_4:62044449-62044468 None:intergenic 40.0%
TCAGACTCAGTCACCTTTAA+TGG - chr1_4:62044587-62044606 Msa0175900:intron 40.0%
CTCAGTGGAACTAAATTGCA+TGG + chr1_4:62044613-62044632 None:intergenic 40.0%
! CTTGCATCTGGTGAAGTTTT+TGG - chr1_4:62044650-62044669 Msa0175900:intron 40.0%
TACACGCATACTCCAAAAAC+GGG + chr1_4:62044771-62044790 None:intergenic 40.0%
TTGGAGTATGCGTGTATCAT+AGG - chr1_4:62044775-62044794 Msa0175900:CDS 40.0%
ATAACAACTTCCCTCAGCAA+AGG + chr1_4:62044887-62044906 None:intergenic 40.0%
CGGCTTTGCTAGACATAAAT+GGG - chr1_4:62044993-62045012 Msa0175900:CDS 40.0%
! TTTTTGCGGAGCAGGTAAAT+TGG - chr1_4:62045020-62045039 Msa0175900:CDS 40.0%
! CAAGCTGACTTTGTATTGCA+AGG + chr1_4:62045183-62045202 None:intergenic 40.0%
CTTGCAATACAAAGTCAGCT+TGG - chr1_4:62045181-62045200 Msa0175900:CDS 40.0%
TCCTTGATCACTTCTTTGAC+GGG + chr1_4:62045578-62045597 None:intergenic 40.0%
AGTAGAAAACCAATCACCCT+CGG + chr1_4:62045842-62045861 None:intergenic 40.0%
AAATACACGTGAATGCGCAT+GGG + chr1_4:62045991-62046010 None:intergenic 40.0%
AAAATACACGTGAATGCGCA+TGG + chr1_4:62045992-62046011 None:intergenic 40.0%
TATTCAGTGTGCCTGAACAT+TGG - chr1_4:62046462-62046481 Msa0175900:intron 40.0%
ATTGGCGGAGAAAAAATGTG+TGG - chr1_4:62046546-62046565 Msa0175900:intron 40.0%
!! ATTGCTGTTTGTGATCTACC+TGG - chr1_4:62046694-62046713 Msa0175900:CDS 40.0%
! ACCTCAGAATATGACGGAAA+GGG + chr1_4:62046952-62046971 None:intergenic 40.0%
! TACCTCAGAATATGACGGAA+AGG + chr1_4:62046953-62046972 None:intergenic 40.0%
ACACACATGGATAACTTTGG+GGG + chr1_4:62047002-62047021 None:intergenic 40.0%
CACACACATGGATAACTTTG+GGG + chr1_4:62047003-62047022 None:intergenic 40.0%
GGCTAACAAAAACACACACA+TGG + chr1_4:62047015-62047034 None:intergenic 40.0%
!! GTGTGTTTTTGTTAGCCACA+TGG - chr1_4:62047018-62047037 Msa0175900:five_prime_UTR 40.0%
!! AGCCACATGGACGTTTTAAA+CGG - chr1_4:62047031-62047050 Msa0175900:five_prime_UTR 40.0%
! TTCCGTTTAAAACGTCCATG+TGG + chr1_4:62047036-62047055 None:intergenic 40.0%
TTACATGCTGACGAGCTTTA+TGG + chr1_4:62047230-62047249 None:intergenic 40.0%
CTCGTCAGCATGTAATAAGT+GGG - chr1_4:62047235-62047254 Msa0175900:five_prime_UTR 40.0%
GTATGTGGGAACAAAGAGGA+TGG + chr1_4:62042485-62042504 None:intergenic 45.0%
!! TTCTCTCTAGGACTCTTCCT+AGG - chr1_4:62042757-62042776 Msa0175900:three_prime_UTR 45.0%
! AAAGTACAGTGATGGTGCCT+AGG + chr1_4:62042777-62042796 None:intergenic 45.0%
! GTGGTGCTAAAGTACAGTGA+TGG + chr1_4:62042785-62042804 None:intergenic 45.0%
GCATGTTGAGTTCTGTGAAG+TGG + chr1_4:62042804-62042823 None:intergenic 45.0%
CAGAAGACACCATAGCAATC+AGG + chr1_4:62042986-62043005 None:intergenic 45.0%
GGTGTTCATGTCGGTGTATT+AGG + chr1_4:62043236-62043255 None:intergenic 45.0%
AGGGATAGAGGTCGGTAATA+TGG - chr1_4:62043505-62043524 Msa0175900:CDS 45.0%
AGTAGCAGTTGTCACGATTG+CGG - chr1_4:62043539-62043558 Msa0175900:intron 45.0%
ACTAAAACTCTGGTATGGGG+GGG + chr1_4:62043650-62043669 None:intergenic 45.0%
CAATATTGCAGCCGCAATTG+CGG - chr1_4:62043907-62043926 Msa0175900:CDS 45.0%
AATATTGCAGCCGCAATTGC+GGG - chr1_4:62043908-62043927 Msa0175900:CDS 45.0%
GCTAAGACAGCAACCCATAA+AGG + chr1_4:62044249-62044268 None:intergenic 45.0%
GGTTGCTGTCTTAGCAGTTT+AGG - chr1_4:62044254-62044273 Msa0175900:intron 45.0%
CGTTTGGCCAATGTGTTTAC+AGG - chr1_4:62044439-62044458 Msa0175900:intron 45.0%
GCCAATGTGTTTACAGGAAG+AGG - chr1_4:62044445-62044464 Msa0175900:intron 45.0%
AGGAAGAGGAGACAAAATCC+TGG - chr1_4:62044459-62044478 Msa0175900:intron 45.0%
AGGTCATTGCAAGCTCTTGA+AGG - chr1_4:62044713-62044732 Msa0175900:CDS 45.0%
GCATCTTGGAACACCTCATA+AGG + chr1_4:62044920-62044939 None:intergenic 45.0%
AGGTGTTCCAAGATGCAGAA+TGG - chr1_4:62044924-62044943 Msa0175900:intron 45.0%
GGTGTTCCAAGATGCAGAAT+GGG - chr1_4:62044925-62044944 Msa0175900:intron 45.0%
! GCAGAATGGGCTTTGCTAAT+AGG - chr1_4:62044938-62044957 Msa0175900:intron 45.0%
GCGGCTTTGCTAGACATAAA+TGG - chr1_4:62044992-62045011 Msa0175900:CDS 45.0%
! GCTTTTCCCTGTTGTACACA+TGG + chr1_4:62045111-62045130 None:intergenic 45.0%
!! ACAGGGAAAAGCACTCAATG+CGG - chr1_4:62045119-62045138 Msa0175900:intron 45.0%
TGAGAACAGGGCAAAATGTC+AGG - chr1_4:62045347-62045366 Msa0175900:intron 45.0%
TTTGATCATTCCTACTCCCG+AGG - chr1_4:62045822-62045841 Msa0175900:intron 45.0%
TTGATCATTCCTACTCCCGA+GGG - chr1_4:62045823-62045842 Msa0175900:intron 45.0%
GTAGAAAACCAATCACCCTC+GGG + chr1_4:62045841-62045860 None:intergenic 45.0%
!!! GAGGGTGATTGGTTTTCTAC+TGG - chr1_4:62045841-62045860 Msa0175900:intron 45.0%
GATTTCCAGTGGTATACACC+TGG + chr1_4:62046148-62046167 None:intergenic 45.0%
ACACTTGCCTTTGATCGACA+CGG + chr1_4:62046206-62046225 None:intergenic 45.0%
CCTTGGCTAATTTCTGTCGT+AGG + chr1_4:62046348-62046367 None:intergenic 45.0%
CCTACGACAGAAATTAGCCA+AGG - chr1_4:62046345-62046364 Msa0175900:intron 45.0%
CTCAAGTTTCAGACTCACCT+TGG + chr1_4:62046365-62046384 None:intergenic 45.0%
GCAGACAGAAGCTGAGTTAT+TGG - chr1_4:62046528-62046547 Msa0175900:intron 45.0%
GACAGAAGCTGAGTTATTGG+CGG - chr1_4:62046531-62046550 Msa0175900:intron 45.0%
AAATGTGTGGCTCACCTAAC+CGG - chr1_4:62046559-62046578 Msa0175900:intron 45.0%
! CAATATTTACCTCGCCGGTT+AGG + chr1_4:62046576-62046595 None:intergenic 45.0%
AACCGGCGAGGTAAATATTG+CGG - chr1_4:62046576-62046595 Msa0175900:intron 45.0%
TTACATTTCTCCTGGGAGCA+TGG + chr1_4:62046725-62046744 None:intergenic 45.0%
CTCTGTCAAAAACGTCCATG+TGG - chr1_4:62046974-62046993 Msa0175900:CDS 45.0%
GCTCGTCAGCATGTAATAAG+TGG - chr1_4:62047234-62047253 Msa0175900:five_prime_UTR 45.0%
! GAGGGTATGTGGGAACAAAG+AGG + chr1_4:62042489-62042508 None:intergenic 50.0%
! TATTATCCGTGTCGGCGTGT+CGG + chr1_4:62043269-62043288 None:intergenic 50.0%
! TATAGGTGTCGTGTCGGTGT+CGG - chr1_4:62043319-62043338 Msa0175900:intron 50.0%
TGTCACGATTGCGGTCATTG+TGG - chr1_4:62043548-62043567 Msa0175900:intron 50.0%
ATTAAGGTGTGACGCCGTTG+AGG - chr1_4:62043869-62043888 Msa0175900:CDS 50.0%
TGTTGTGGTAGCCTCCTCAA+CGG + chr1_4:62043886-62043905 None:intergenic 50.0%
! CGGCTGCAATATTGCTGTTG+TGG + chr1_4:62043901-62043920 None:intergenic 50.0%
! GACTGAGTCTGAGACTGCAA+TGG + chr1_4:62044579-62044598 None:intergenic 50.0%
! CAACAATGCAGGTGTTGCGA+TGG - chr1_4:62044841-62044860 Msa0175900:intron 50.0%
GCAAAGCCCATTCTGCATCT+TGG + chr1_4:62044934-62044953 None:intergenic 50.0%
CTAATAGGTGCAAAGCCTCG+AGG - chr1_4:62044953-62044972 Msa0175900:intron 50.0%
!! CTTCAGGGCTAGCTACACAT+TGG + chr1_4:62045456-62045475 None:intergenic 50.0%
CAATGTGTAGCTAGCCCTGA+AGG - chr1_4:62045454-62045473 Msa0175900:intron 50.0%
GTAGAAGACACCTGCCTTCA+GGG + chr1_4:62045471-62045490 None:intergenic 50.0%
GGGAAACCACTCAACTACTC+AGG - chr1_4:62045517-62045536 Msa0175900:intron 50.0%
GCCCGTCAAAGAAGTGATCA+AGG - chr1_4:62045574-62045593 Msa0175900:intron 50.0%
CAATGCCAGGTGTATACCAC+TGG - chr1_4:62046140-62046159 Msa0175900:intron 50.0%
! CAGTATGCCGTGTCGATCAA+AGG - chr1_4:62046196-62046215 Msa0175900:intron 50.0%
AAATATTGCGGCCCGAATCG+CGG - chr1_4:62046588-62046607 Msa0175900:intron 50.0%
TGTTTGCGTAGACCGCGATT+CGG + chr1_4:62046603-62046622 None:intergenic 50.0%
GCCCTTTCCGTCATATTCTG+AGG - chr1_4:62046948-62046967 Msa0175900:CDS 50.0%
!! ATAACTTTGGGGGTGCCACA+TGG + chr1_4:62046992-62047011 None:intergenic 50.0%
GGATCCTGTGTCTGTACTGC+TGG + chr1_4:62042953-62042972 None:intergenic 55.0%
GTCGTGTCCGGTGTTCATGT+CGG + chr1_4:62043245-62043264 None:intergenic 55.0%
AACTCTGGTATGGGGGGGTA+CGG + chr1_4:62043645-62043664 None:intergenic 55.0%
! TGCAGGTGTTGCGATGGAGT+TGG - chr1_4:62044847-62044866 Msa0175900:intron 55.0%
! AGGTGTTGCGATGGAGTTGG+AGG - chr1_4:62044850-62044869 Msa0175900:intron 55.0%
AAAGCCTCGAGGACCTGGAA+TGG - chr1_4:62044964-62044983 Msa0175900:intron 55.0%
! TGGGCAGATTTTTGCGGAGC+AGG - chr1_4:62045012-62045031 Msa0175900:CDS 55.0%
CGTAGAAGACACCTGCCTTC+AGG + chr1_4:62045472-62045491 None:intergenic 55.0%
CAGGGACCTGAGTAGTTGAG+TGG + chr1_4:62045526-62045545 None:intergenic 55.0%
TTCCTACTCCCGAGGGTGAT+TGG - chr1_4:62045830-62045849 Msa0175900:intron 55.0%
AACCAATCACCCTCGGGAGT+AGG + chr1_4:62045835-62045854 None:intergenic 55.0%
GGCCGCAATATTTACCTCGC+CGG + chr1_4:62046581-62046600 None:intergenic 55.0%
GTTTGCGTAGACCGCGATTC+GGG + chr1_4:62046602-62046621 None:intergenic 55.0%
CGGACACGCGTCCTAATCTG+AGG - chr1_4:62043339-62043358 Msa0175900:CDS 60.0%
GCACGGACGCTCCTCAGATT+AGG + chr1_4:62043353-62043372 None:intergenic 60.0%
!! GAGGAGCGTCCGTGCTTCAT+AGG - chr1_4:62043358-62043377 Msa0175900:CDS 60.0%
AAGGTGTGACGCCGTTGAGG+AGG - chr1_4:62043872-62043891 Msa0175900:CDS 60.0%
AGCAGCACCCGAGACTGCAA+TGG + chr1_4:62044498-62044517 None:intergenic 60.0%
! ATTGCAGTCTCGGGTGCTGC+TGG - chr1_4:62044497-62044516 Msa0175900:intron 60.0%
AGGACCTGGAATGGAGCGTG+CGG - chr1_4:62044973-62044992 Msa0175900:CDS 60.0%
AAAGCCGCACGCTCCATTCC+AGG + chr1_4:62044980-62044999 None:intergenic 60.0%
GTGTAGCTAGCCCTGAAGGC+AGG - chr1_4:62045458-62045477 Msa0175900:intron 60.0%
!! GACGGGCAACCCATCGATTC+TGG + chr1_4:62045561-62045580 None:intergenic 60.0%
ATGCGCATGGGTCCCGACAT+TGG + chr1_4:62045979-62045998 None:intergenic 60.0%
! CCTGGGAGCATGGTATCACC+AGG + chr1_4:62046715-62046734 None:intergenic 60.0%
CCTGGTGATACCATGCTCCC+AGG - chr1_4:62046712-62046731 Msa0175900:CDS 60.0%
GGCGCCAGCAGTACAGACAC+AGG - chr1_4:62042946-62042965 Msa0175900:exon 65.0%
ACGACACCGACACGCCGACA+CGG - chr1_4:62043260-62043279 Msa0175900:intron 65.0%
TGCAGCCGCAATTGCGGGTG+CGG - chr1_4:62043913-62043932 Msa0175900:CDS 65.0%
GCAGTCCGCACCCGCAATTG+CGG + chr1_4:62043921-62043940 None:intergenic 65.0%
GGTGCAAAGCCTCGAGGACC+TGG - chr1_4:62044959-62044978 Msa0175900:intron 65.0%
CGCTCCATTCCAGGTCCTCG+AGG + chr1_4:62044971-62044990 None:intergenic 65.0%
TGTGGCTCACCTAACCGGCG+AGG - chr1_4:62046564-62046583 Msa0175900:intron 65.0%
!! CGGCGTGTCGGTGTCGTGTC+CGG + chr1_4:62043257-62043276 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 62042252 62047453 62042252 ID=Msa0175900;Name=Msa0175900
chr1_4 mRNA 62042252 62047453 62042252 ID=Msa0175900-mRNA-1;Parent=Msa0175900;Name=Msa0175900-mRNA-1;_AED=0.11;_eAED=0.11;_QI=438|0.91|0.92|1|1|1|13|709|462
chr1_4 exon 62042252 62043014 62042252 ID=Msa0175900-mRNA-1:exon:19903;Parent=Msa0175900-mRNA-1
chr1_4 exon 62043120 62043173 62043120 ID=Msa0175900-mRNA-1:exon:19902;Parent=Msa0175900-mRNA-1
chr1_4 exon 62043339 62043407 62043339 ID=Msa0175900-mRNA-1:exon:19901;Parent=Msa0175900-mRNA-1
chr1_4 exon 62043488 62043556 62043488 ID=Msa0175900-mRNA-1:exon:19900;Parent=Msa0175900-mRNA-1
chr1_4 exon 62043766 62043963 62043766 ID=Msa0175900-mRNA-1:exon:19899;Parent=Msa0175900-mRNA-1
chr1_4 exon 62044065 62044241 62044065 ID=Msa0175900-mRNA-1:exon:19898;Parent=Msa0175900-mRNA-1
chr1_4 exon 62044337 62044427 62044337 ID=Msa0175900-mRNA-1:exon:19897;Parent=Msa0175900-mRNA-1
chr1_4 exon 62044512 62044582 62044512 ID=Msa0175900-mRNA-1:exon:19896;Parent=Msa0175900-mRNA-1
chr1_4 exon 62044672 62044853 62044672 ID=Msa0175900-mRNA-1:exon:19895;Parent=Msa0175900-mRNA-1
chr1_4 exon 62044971 62045055 62044971 ID=Msa0175900-mRNA-1:exon:19894;Parent=Msa0175900-mRNA-1
chr1_4 exon 62045158 62045244 62045158 ID=Msa0175900-mRNA-1:exon:19893;Parent=Msa0175900-mRNA-1
chr1_4 exon 62046678 62046768 62046678 ID=Msa0175900-mRNA-1:exon:19892;Parent=Msa0175900-mRNA-1
chr1_4 exon 62046855 62047453 62046855 ID=Msa0175900-mRNA-1:exon:19891;Parent=Msa0175900-mRNA-1
chr1_4 five_prime_UTR 62047016 62047453 62047016 ID=Msa0175900-mRNA-1:five_prime_utr;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62046855 62047015 62046855 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62046678 62046768 62046678 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62045158 62045244 62045158 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62044971 62045055 62044971 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62044672 62044853 62044672 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62044512 62044582 62044512 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62044337 62044427 62044337 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62044065 62044241 62044065 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62043766 62043963 62043766 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62043488 62043556 62043488 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62043339 62043407 62043339 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62043120 62043173 62043120 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 CDS 62042961 62043014 62042961 ID=Msa0175900-mRNA-1:cds;Parent=Msa0175900-mRNA-1
chr1_4 three_prime_UTR 62042252 62042960 62042252 ID=Msa0175900-mRNA-1:three_prime_utr;Parent=Msa0175900-mRNA-1
Gene Sequence

>Msa0175900

ATGGCTCTGACACAGTTAAACAACACTTGCTCAAAAACTCAACTTCACTCATCATCACAACTCTCATTTCTCTCTAGGACTCTTCCTAGGCACCATCACTGTACTTTAGCACCACTTCACAGAACTCAACATGCTAGAATTTCTTGTTCTGTTGCACCAAATCAAGTGCAGGCGCCAGCAGTACAGACACAGGATCCCAAGAGTAAACCTGATTGCTATGGTGTCTTCTGCCTTACCTATGATTTGAAGGCTGAAGAGGAGACAAAATCCTGGAAGAAATTAATTACCATTGCAGTCTCGGGTGCTGCTGGAATGATTTCCAATCATCTACTTTTCAAGCTTGCATCTGGTGAAGTTTTTGGTCCAAATCAACCTATTGCTCTGAAATTATTAGGATCGGAAAGGTCATTGCAAGCTCTTGAAGGTGTTGCGATGGAGTTGGAGGACTCTTTATTTCCTTTGCTGAGGGAAGTTGTTATTAGCATTGATCCTTATGAGGTGTTCCAAGATGCAGAATGGGCTTTGCTAATAGGTGCAAAGCCTCGAGGACCTGGAATGGAGCGTGCGGCTTTGCTAGACATAAATGGGCAGATTTTTGCGGAGCAGGGAAAAGCACTCAATGCGGTTGCATCTCGCAATGTCAAAGTTATAGTCGTGGGAAACCCTTGCAATACAAATGCATTAATATGCTTGAAGAATGCTCCAAATATTCCTGCAAAAAATTTCCATGCTTTAACTCGTTTAGATGAGAACAGGGCAAAATGTCAGCTAGCCCTGAAGGCAGGTGTCTTCTACGATAAAGTGTCAAATATGACAATATGGGGAAACCACTCAACTACTCAGGTCCCTGACTTCTTAAATGCCAGAATCGATGGGTTGCCCGTCAAAGAAGTGATCAAGGATCATAAATGGTTAGAGGAAGAGTTCACTGAAAAAGTTCAAAAGAGAGGTGGTGCACTTATTCAAAAATGGGGAAGATCATCTGCTGCATCGACTTCTGTGTCTATAGTTGATGCCATACGATCTTTGATCATTCCTACTCCCGAGGGTGATTGGTTTTCTACTGGTGTAAGTTTGTATTTCTTAAACAACCTTGTGTATTTACTTGATATAGAATTGGATGATCTTTTCAGAAAGATGCAAGTGTATACCACTGGAAATCCTTATGGAATAGCTGAAGATATTGTTTTCAGTATGCCGTGTCGATCAAAGGGAGATGGTGATTATGAACTTGTCAAGGATGTTATATTTGATGACTACCTACGACAGAAATTAGCCAAGACAGAAGCTGAGTTATTGGCGGAGAAAAAATGTGTGGCTCACCTAACCGGCGAGGGGATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCAGGAGAAATGTAA

Protein sequence

>Msa0175900

MALTQLNNTCSKTQLHSSSQLSFLSRTLPRHHHCTLAPLHRTQHARISCSVAPNQVQAPAVQTQDPKSKPDCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMERAALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDHKWLEEEFTEKVQKRGGALIQKWGRSSAASTSVSIVDAIRSLIIPTPEGDWFSTGVSLYFLNNLVYLLDIELDDLFRKMQVYTTGNPYGIAEDIVFSMPCRSKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM*