AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0959970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959970 MtrunA17_Chr6g0463901 96.635 208 7 0 1 208 1 208 1.00e-146 420
Msa0959970 MtrunA17_Chr6g0463901 98.551 138 2 0 276 413 202 339 3.88e-94 286
Msa0959970 MtrunA17_Chr2g0278581 81.731 208 38 0 1 208 1 208 1.02e-121 357
Msa0959970 MtrunA17_Chr2g0278581 84.328 134 21 0 276 409 202 335 9.94e-79 246
Msa0959970 MtrunA17_Chr7g0241071 47.867 211 92 2 11 204 71 280 3.92e-55 187
Msa0959970 MtrunA17_Chr7g0241071 52.985 134 63 0 276 409 278 411 2.61e-43 156
Msa0959970 MtrunA17_Chr4g0049821 36.813 182 99 4 32 204 87 261 2.53e-29 117
Msa0959970 MtrunA17_Chr4g0049821 45.802 131 64 2 277 406 260 384 3.34e-29 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959970 AT1G43670.1 81.731 208 38 0 1 208 1 208 8.24e-123 360
Msa0959970 AT1G43670.1 87.681 138 17 0 276 413 202 339 5.10e-85 263
Msa0959970 AT3G54050.2 49.763 211 86 3 11 204 79 286 6.73e-58 195
Msa0959970 AT3G54050.2 50.000 134 67 0 276 409 284 417 2.51e-40 149
Msa0959970 AT3G54050.1 49.763 211 86 3 11 204 79 286 6.73e-58 195
Msa0959970 AT3G54050.1 50.000 134 67 0 276 409 284 417 2.51e-40 149
Msa0959970 AT5G64380.1 38.462 182 100 5 32 204 89 267 3.51e-32 126
Msa0959970 AT5G64380.1 43.182 132 68 2 276 406 265 390 1.86e-27 113

Find 123 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGTGGGTTCGATGTTT+TGG 0.164726 6_3:+77928054 None:intergenic
TTAAGTGTATGTTTAGAATT+TGG 0.166521 6_3:-77927937 Msa0959970:five_prime_UTR
GCTCACACTCCTCGTCTTTA+TGG 0.194338 6_3:-77924121 Msa0959970:intron
GAATAAATCTTGCCTTTCTT+TGG 0.224320 6_3:+77923674 None:intergenic
TTGCTTAATAACATTGTTCT+TGG 0.232374 6_3:-77927527 Msa0959970:CDS
ACCACTGGAAGTGGTGTTAA+TGG 0.234751 6_3:-77924474 Msa0959970:CDS
CTAAAGTTGACTACCTTAAT+AGG 0.266820 6_3:-77924219 Msa0959970:CDS
GGTTATAGTTCTTTAATTAA+TGG 0.267353 6_3:-77921363 Msa0959970:three_prime_UTR
AAACGACAGGCATTGCCTTC+TGG 0.273156 6_3:+77923947 None:intergenic
GCAAAGTCTCTTAGATATAT+TGG 0.276844 6_3:-77923478 Msa0959970:CDS
CCTAACTCACCCTGACATTA+AGG 0.279021 6_3:-77924418 Msa0959970:intron
GAAAGATCTCCGATATTTCT+TGG 0.282491 6_3:-77921590 Msa0959970:CDS
CTTCCCAATGTCCTTCTTGA+TGG 0.290934 6_3:-77922342 Msa0959970:CDS
ACATATATATCTAAAGAATT+TGG 0.301719 6_3:-77927732 Msa0959970:five_prime_UTR
CTACCATGGACAACCTATTA+AGG 0.306246 6_3:+77924206 None:intergenic
GTAAAATCTCCACGTGATTC+AGG 0.312460 6_3:+77927554 None:intergenic
ATGCATTACCCTTTCCTTGC+CGG 0.313636 6_3:+77922295 None:intergenic
CAAGCATTTATCCAATTGTT+AGG 0.326336 6_3:-77921473 Msa0959970:three_prime_UTR
GCAAAGCTCATTGGACTTGC+TGG 0.331186 6_3:-77926103 Msa0959970:CDS
AATAAATCTTGCCTTTCTTT+GGG 0.337209 6_3:+77923675 None:intergenic
CGATTGATTCATTCATTGAT+TGG 0.344065 6_3:-77927681 Msa0959970:five_prime_UTR
CGTACATAGTTGATTGGTTT+CGG 0.346980 6_3:-77927707 Msa0959970:five_prime_UTR
ATTCAACACAAAACGTGTTA+TGG 0.348871 6_3:+77927592 None:intergenic
CCTTAATGTCAGGGTGAGTT+AGG 0.353076 6_3:+77924418 None:intergenic
CTTTAGTAAAACAATTGTAT+AGG 0.360299 6_3:+77927985 None:intergenic
CTACTGCCAATGGGCGTATT+CGG 0.361464 6_3:+77924146 None:intergenic
GTTCATCGTACATTGCTATA+TGG 0.377460 6_3:-77922531 Msa0959970:CDS
TTCACTCTCGACCCTTCTCT+TGG 0.387036 6_3:-77924450 Msa0959970:CDS
GGTAGGACCATCCCAGTTCT+TGG 0.411498 6_3:+77923634 None:intergenic
TGCTGGAGAGACCAATGTTC+AGG 0.415049 6_3:-77926086 Msa0959970:intron
ATGAAGGGAATGCCAAGAAC+TGG 0.427423 6_3:-77923646 Msa0959970:CDS
CATCATCTATGATTGGTTCA+TGG 0.429120 6_3:+77924685 None:intergenic
TGCAGAACATCATCTATGAT+TGG 0.429779 6_3:+77924678 None:intergenic
ATGTTGGAGGAGCCGTCTAA+TGG 0.431159 6_3:+77925090 None:intergenic
TTGGTACGTACATAGTTGAT+TGG 0.433683 6_3:-77927713 Msa0959970:five_prime_UTR
GCAGAATATACCTTAATGTC+AGG 0.435699 6_3:+77924408 None:intergenic
GCACTTGTTAGCCTAACAAT+TGG 0.436975 6_3:+77921462 None:intergenic
TTTGTCAGCAGGGTACAAAA+AGG 0.440471 6_3:+77922503 None:intergenic
AAATATACATATACATGATA+AGG 0.445418 6_3:+77921416 None:intergenic
TATTGTCAATATTACTCCCT+AGG 0.450735 6_3:+77927816 None:intergenic
GCTGGTCTTGCAAAGCTCAT+TGG 0.453630 6_3:-77926112 Msa0959970:CDS
AATGTCCTTCTTGATGGAAC+AGG 0.459315 6_3:-77922336 Msa0959970:CDS
AAGATTTATTCAGTGAATGA+AGG 0.460520 6_3:-77923662 Msa0959970:CDS
GGGTGAAGAGCAGAAGAAGC+TGG 0.462335 6_3:-77925647 Msa0959970:CDS
TCATAGCTACCAAGAAATAT+CGG 0.462666 6_3:+77921581 None:intergenic
GGCTTTCACCGGCAAGGAAA+GGG 0.474657 6_3:-77922303 Msa0959970:intron
AGCCTTGCAAAACACCTCAT+TGG 0.482303 6_3:+77925615 None:intergenic
CAATTCATGTCCCACGCCCT+AGG 0.491629 6_3:-77927833 Msa0959970:five_prime_UTR
AGATGAGGATGCAATATTTG+TGG 0.495684 6_3:-77925468 Msa0959970:CDS
ATTGATTGTGGTGTTTCCAT+TGG 0.496286 6_3:-77925069 Msa0959970:CDS
AACAATGTTATTAAGCAAGA+TGG 0.502314 6_3:+77927532 None:intergenic
GTTCCATCAAGAAGGACATT+GGG 0.503823 6_3:+77922339 None:intergenic
GATGGAACAGGCAGGAGGAC+AGG 0.504743 6_3:-77922324 Msa0959970:CDS
TGCTGCAGAGGCTAAATAAG+AGG 0.508283 6_3:-77921531 Msa0959970:exon
GCTGCTAACATGTTCTTCCC+TGG 0.509552 6_3:+77924654 None:intergenic
AGGCTTTCACCGGCAAGGAA+AGG 0.509795 6_3:-77922304 Msa0959970:CDS
CAATGTGCTATGTGAGGAGA+AGG 0.510945 6_3:+77928026 None:intergenic
ATATATCTAAGAGACTTTGC+TGG 0.512421 6_3:+77923481 None:intergenic
AGGATAAACTCGCCAAGAGA+AGG 0.516852 6_3:+77924438 None:intergenic
AACAACTTTCCACGCTGCTT+AGG 0.518664 6_3:+77925443 None:intergenic
GCAGCTGGTTATTGCATGTA+CGG 0.523788 6_3:-77924636 Msa0959970:CDS
CAATATTACTCCCTAGGGCG+TGG 0.526446 6_3:+77927822 None:intergenic
AATTCATGTCCCACGCCCTA+GGG 0.527553 6_3:-77927832 Msa0959970:five_prime_UTR
AAATGCAAGTTTCCAACAGA+TGG 0.529309 6_3:-77923508 Msa0959970:CDS
TAGATGATGTTCTGCAACCA+GGG 0.531413 6_3:-77924671 Msa0959970:CDS
GTGTGAGCTTCTACTGCCAA+TGG 0.534114 6_3:+77924136 None:intergenic
TCTTTGCAGATCCCAAAGAA+AGG 0.537179 6_3:-77923686 Msa0959970:intron
TGTTCCATCAAGAAGGACAT+TGG 0.542151 6_3:+77922338 None:intergenic
GGAAACACTTACCTGAACAT+TGG 0.543127 6_3:+77926075 None:intergenic
ATAGATGATGTTCTGCAACC+AGG 0.548458 6_3:-77924672 Msa0959970:CDS
GCAGGAGGACAGGCTTTCAC+CGG 0.548518 6_3:-77922314 Msa0959970:CDS
TTTGCTGGTGAACCATCTGT+TGG 0.549730 6_3:+77923496 None:intergenic
TGTGAGCTTCTACTGCCAAT+GGG 0.550155 6_3:+77924137 None:intergenic
CTACCTTAATAGGTTGTCCA+TGG 0.552047 6_3:-77924209 Msa0959970:CDS
ATGTGCTATGTGAGGAGAAG+GGG 0.554470 6_3:+77928028 None:intergenic
TCCTGCCTGTTCCATCAAGA+AGG 0.554789 6_3:+77922331 None:intergenic
AAGTGAATAAGTGAGATGTC+CGG 0.559243 6_3:-77927883 Msa0959970:five_prime_UTR
GGGAAGAACATGTTAGCAGC+TGG 0.562041 6_3:-77924651 Msa0959970:CDS
GGAAACACCACAATCAATGT+TGG 0.562157 6_3:+77925074 None:intergenic
TTGCAGTTTGTGATAACCAC+TGG 0.562279 6_3:-77924489 Msa0959970:intron
TAGGGATCATACAGTTCCAA+TGG 0.562520 6_3:+77925053 None:intergenic
CAAAGCTCTTTATGCTGCAG+AGG 0.565129 6_3:-77921543 Msa0959970:CDS
CAACGACCGAATACGCCCAT+TGG 0.569774 6_3:-77924152 Msa0959970:CDS
CTTGGTTTCTGAAGAAGATG+AGG 0.575814 6_3:-77925483 Msa0959970:CDS
TGCAAGGCTTTGATAAGCAG+TGG 0.579114 6_3:-77925601 Msa0959970:CDS
AGATTTATTCAGTGAATGAA+GGG 0.580033 6_3:-77923661 Msa0959970:CDS
ATTGTCAATATTACTCCCTA+GGG 0.582429 6_3:+77927817 None:intergenic
ACCATTAACACCACTTCCAG+TGG 0.586134 6_3:+77924473 None:intergenic
GGATAAACTCGCCAAGAGAA+GGG 0.588099 6_3:+77924439 None:intergenic
ACTTGTTAATGTGTTTGCCA+TGG 0.589626 6_3:-77921384 Msa0959970:three_prime_UTR
TCCTTCTTGATGGAACAGGC+AGG 0.593282 6_3:-77922332 Msa0959970:CDS
CATGTACGGAAGCTCTTGCA+CGG 0.593772 6_3:-77924622 Msa0959970:intron
CTTCTCCTCACATAGCACAT+TGG 0.596416 6_3:-77928025 Msa0959970:five_prime_UTR
AATATTACTCCCTAGGGCGT+GGG 0.598399 6_3:+77927823 None:intergenic
TTTGTGATAACCACTGGAAG+TGG 0.598951 6_3:-77924483 Msa0959970:CDS
TGTATAGGATAAAGTGTGAG+AGG 0.599786 6_3:+77928000 None:intergenic
CAGAATATACCTTAATGTCA+GGG 0.600106 6_3:+77924409 None:intergenic
AACACCACAATCAATGTTGG+AGG 0.603640 6_3:+77925077 None:intergenic
TAATTAAAGAACTATAACCA+TGG 0.609696 6_3:+77921367 None:intergenic
AGAGTCCAAATGGAAAACTT+CGG 0.610193 6_3:-77922479 Msa0959970:intron
GGGAATGCCAAGAACTGGGA+TGG 0.611887 6_3:-77923641 Msa0959970:CDS
TGTTTGTTCTGCTGTTAACA+AGG 0.612661 6_3:-77927495 Msa0959970:intron
GGCTCCTCCAACATTGATTG+TGG 0.614292 6_3:-77925081 Msa0959970:CDS
AGTCTCTTAGATATATTGGA+AGG 0.616044 6_3:-77923474 Msa0959970:intron
ATTCATACGTACGCAGCGGT+AGG 0.620838 6_3:+77923617 None:intergenic
AAGTGTCGGTGTTTGAACTC+CGG 0.620873 6_3:+77927864 None:intergenic
GCTGGATGTTCTTTCCAATG+AGG 0.626395 6_3:-77925629 Msa0959970:CDS
AATGTGCTATGTGAGGAGAA+GGG 0.627316 6_3:+77928027 None:intergenic
TGAAGGGAATGCCAAGAACT+GGG 0.636555 6_3:-77923645 Msa0959970:CDS
TACGATGTGCATCTGCGCTG+TGG 0.637166 6_3:+77927627 None:intergenic
TGTGCTATGTGAGGAGAAGG+GGG 0.641589 6_3:+77928029 None:intergenic
GTATAGGATAAAGTGTGAGA+GGG 0.642392 6_3:+77928001 None:intergenic
TGTGAGCTTCTACTTCCAGA+AGG 0.653232 6_3:-77923962 Msa0959970:CDS
CATCGTACATTGCTATATGG+AGG 0.654004 6_3:-77922528 Msa0959970:CDS
TGGTAGCTATGATGATATCG+AGG 0.676941 6_3:-77921570 Msa0959970:CDS
TTCTTGATGGAACAGGCAGG+AGG 0.688021 6_3:-77922329 Msa0959970:CDS
TCTAAGCATCCTGAATCACG+TGG 0.704682 6_3:-77927563 Msa0959970:CDS
GAATTGTTATATGCAAGTGT+CGG 0.709154 6_3:+77927850 None:intergenic
AAGTCACTGTCTAAGCAACG+AGG 0.722033 6_3:-77923994 Msa0959970:CDS
ACCAAGTCACCATAAAGACG+AGG 0.728082 6_3:+77924112 None:intergenic
AGGGACCAATGTGCTATGTG+AGG 0.730738 6_3:+77928020 None:intergenic
TTTGTGGATCCTAAGCAGCG+TGG 0.736390 6_3:-77925452 Msa0959970:CDS
AGTCACTGTCTAAGCAACGA+GGG 0.736982 6_3:-77923993 Msa0959970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAACAACTTAATTTTATT+TGG - chr6_3:77922669-77922688 Msa0959970:intron 10.0%
!!! TCTAATTATTTTAATTTTGA+TGG - chr6_3:77926960-77926979 Msa0959970:intron 10.0%
!!! TTAAAAAGTGATTTTTATTA+TGG + chr6_3:77927159-77927178 None:intergenic 10.0%
!!! TTGAAAAGAATTTATTTTTA+CGG - chr6_3:77927375-77927394 Msa0959970:intron 10.0%
!! ACATATATATCTAAAGAATT+TGG - chr6_3:77921636-77921655 Msa0959970:intron 15.0%
!!! TAAAACACTTTTTTTATTGA+AGG + chr6_3:77922050-77922069 None:intergenic 15.0%
!! ATCTTACTAAATTAATTGTT+AGG - chr6_3:77923499-77923518 Msa0959970:CDS 15.0%
!! ACTTATTGTAATATTCAAAT+AGG - chr6_3:77925606-77925625 Msa0959970:CDS 15.0%
!! CTTATTGTAATATTCAAATA+GGG - chr6_3:77925607-77925626 Msa0959970:CDS 15.0%
!! TAAGATTGAAAATTTAACAA+TGG - chr6_3:77925803-77925822 Msa0959970:intron 15.0%
!!! TTTTGTGAATAAAAAAAATG+CGG + chr6_3:77926588-77926607 None:intergenic 15.0%
!!! AAGCTAATATAATTTGTATT+TGG - chr6_3:77926937-77926956 Msa0959970:intron 15.0%
!!! TTTTTCTTCGAAAAATATAT+AGG - chr6_3:77927115-77927134 Msa0959970:intron 15.0%
!!! AACAATTTCTCATTTTAAAT+AGG - chr6_3:77927192-77927211 Msa0959970:intron 15.0%
!!! AAACAAGTTTTAATTCTTAT+AGG + chr6_3:77927931-77927950 None:intergenic 15.0%
!! AAATATACATATACATGATA+AGG + chr6_3:77927955-77927974 None:intergenic 15.0%
!! CTTTAGTAAAACAATTGTAT+AGG + chr6_3:77921386-77921405 None:intergenic 20.0%
!!! TTAAGTGTATGTTTAGAATT+TGG - chr6_3:77921431-77921450 Msa0959970:three_prime_UTR 20.0%
!!! TTTTGAAGATTCATCAAAAA+TGG - chr6_3:77921717-77921736 Msa0959970:intron 20.0%
!! GATATTTGCATGATTAAAAA+AGG - chr6_3:77922283-77922302 Msa0959970:intron 20.0%
!!! ATGATTAAAAAAGGTTGATA+TGG - chr6_3:77922292-77922311 Msa0959970:intron 20.0%
!! TTCAATGTAACAATTTATGT+CGG + chr6_3:77922387-77922406 None:intergenic 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG + chr6_3:77922662-77922681 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG + chr6_3:77922663-77922682 None:intergenic 20.0%
!!! AAAATACTACTTTTTCATGA+TGG - chr6_3:77923413-77923432 Msa0959970:intron 20.0%
!!! ATGTACTTTTCTTTATTGTT+TGG - chr6_3:77923692-77923711 Msa0959970:intron 20.0%
!!! TCTATTTTTTATTACGATTC+AGG - chr6_3:77924237-77924256 Msa0959970:intron 20.0%
!! TTAATTACTCCATTACAATA+CGG - chr6_3:77924845-77924864 Msa0959970:intron 20.0%
!! AATAAGTTTGCATTATAGAT+AGG + chr6_3:77925593-77925612 None:intergenic 20.0%
!!! TTTTTCTTATTACAGTTATG+TGG - chr6_3:77925835-77925854 Msa0959970:intron 20.0%
!!! TTGTTTATTTTATCCAAACA+AGG + chr6_3:77925977-77925996 None:intergenic 20.0%
!!! AAAAACAACTTATTTCTTAC+AGG + chr6_3:77926166-77926185 None:intergenic 20.0%
!! CTAGAGTCTATAATTATTAA+TGG - chr6_3:77926249-77926268 Msa0959970:intron 20.0%
!!! TGAAAGATAATTGATGATTT+TGG + chr6_3:77926303-77926322 None:intergenic 20.0%
!!! TTATATTAGCTTAAACATTG+AGG + chr6_3:77926929-77926948 None:intergenic 20.0%
!!! AATATCGTTTTATTGGATTA+GGG + chr6_3:77927353-77927372 None:intergenic 20.0%
!!! AAATATCGTTTTATTGGATT+AGG + chr6_3:77927354-77927373 None:intergenic 20.0%
!!! TTCAACAAATATCGTTTTAT+TGG + chr6_3:77927360-77927379 None:intergenic 20.0%
!! AAGAGATTTCAATAAAAGTA+TGG - chr6_3:77927445-77927464 Msa0959970:intron 20.0%
!! GAAGGAAAAAAAAAATATGA+TGG + chr6_3:77927578-77927597 None:intergenic 20.0%
!! CTTATTAGACATTTATAAGA+AGG + chr6_3:77927596-77927615 None:intergenic 20.0%
!! CTTCTTATAAATGTCTAATA+AGG - chr6_3:77927594-77927613 Msa0959970:CDS 20.0%
!! TAATTAAAGAACTATAACCA+TGG + chr6_3:77928004-77928023 None:intergenic 20.0%
!! GGTTATAGTTCTTTAATTAA+TGG - chr6_3:77928005-77928024 Msa0959970:five_prime_UTR 20.0%
! AACAATGTTATTAAGCAAGA+TGG + chr6_3:77921839-77921858 None:intergenic 25.0%
! TTGCTTAATAACATTGTTCT+TGG - chr6_3:77921841-77921860 Msa0959970:intron 25.0%
! ACAAAACAAAAAAAGAGTGA+AGG + chr6_3:77921908-77921927 None:intergenic 25.0%
! AAACATAGAATTATGATCAG+TGG + chr6_3:77921997-77922016 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr6_3:77922112-77922131 None:intergenic 25.0%
! TATCAAATTATTAGCAGTGT+CGG - chr6_3:77922151-77922170 Msa0959970:intron 25.0%
!! TGTTATCAAGATTCATTTTG+TGG - chr6_3:77922241-77922260 Msa0959970:intron 25.0%
!!! AAAAAGGTTGATATGGATTA+AGG - chr6_3:77922299-77922318 Msa0959970:intron 25.0%
! CCATAATTGTATATCAATCA+CGG + chr6_3:77922485-77922504 None:intergenic 25.0%
! CATTTAGTACCAAACATAAA+AGG - chr6_3:77922630-77922649 Msa0959970:intron 25.0%
!! TGTTTTCGTATAAGCTATTT+TGG - chr6_3:77922898-77922917 Msa0959970:intron 25.0%
!!! TGCAACTAAGATTTTAATTG+TGG - chr6_3:77923069-77923088 Msa0959970:intron 25.0%
! CAATCAAGACTTCAATATAT+TGG + chr6_3:77923117-77923136 None:intergenic 25.0%
!!! TGAGATTTTGTTATATGTGT+AGG - chr6_3:77923234-77923253 Msa0959970:intron 25.0%
!! GCAAACTTATAAGTTTGTTT+GGG + chr6_3:77923317-77923336 None:intergenic 25.0%
!! TGCAAACTTATAAGTTTGTT+TGG + chr6_3:77923318-77923337 None:intergenic 25.0%
!!! AAATCACTTTTGATTGATGA+TGG - chr6_3:77923461-77923480 Msa0959970:intron 25.0%
!! TTCTTTATTGTTTGGAATGA+AGG - chr6_3:77923700-77923719 Msa0959970:intron 25.0%
!! TCTTTATTGTTTGGAATGAA+GGG - chr6_3:77923701-77923720 Msa0959970:intron 25.0%
!! AGTTTAATAGCTTTTGATGA+TGG - chr6_3:77923840-77923859 Msa0959970:intron 25.0%
! AACCTTCTTAGAGAATATAT+GGG + chr6_3:77923984-77924003 None:intergenic 25.0%
! AAACCTTCTTAGAGAATATA+TGG + chr6_3:77923985-77924004 None:intergenic 25.0%
!!! GAAGTTTAACTGTGATTTTT+TGG - chr6_3:77924193-77924212 Msa0959970:CDS 25.0%
!! TTGAACATTTTGCAGATTTT+TGG - chr6_3:77924639-77924658 Msa0959970:CDS 25.0%
!! TGAACATTTTGCAGATTTTT+GGG - chr6_3:77924640-77924659 Msa0959970:CDS 25.0%
! TAATTACTCCATTACAATAC+GGG - chr6_3:77924846-77924865 Msa0959970:intron 25.0%
! TCTATTTGCTTAAAACTTCA+TGG - chr6_3:77925079-77925098 Msa0959970:CDS 25.0%
! ACCAAACTAGGATAAAAATA+AGG + chr6_3:77925520-77925539 None:intergenic 25.0%
! ACACCATTTATGTTAATTGT+TGG - chr6_3:77925649-77925668 Msa0959970:CDS 25.0%
! ACACCAACAATTAACATAAA+TGG + chr6_3:77925655-77925674 None:intergenic 25.0%
! AATAAATCTTGCCTTTCTTT+GGG + chr6_3:77925696-77925715 None:intergenic 25.0%
! AAGATTTATTCAGTGAATGA+AGG - chr6_3:77925706-77925725 Msa0959970:intron 25.0%
! AGATTTATTCAGTGAATGAA+GGG - chr6_3:77925707-77925726 Msa0959970:intron 25.0%
! GAAAACAACTTATAGCTTAT+TGG + chr6_3:77926115-77926134 None:intergenic 25.0%
!!! TATTTTTACAACCCTGTTAT+TGG - chr6_3:77926507-77926526 Msa0959970:intron 25.0%
! TAAAAGTTAATCGGTAAAGT+CGG + chr6_3:77926546-77926565 None:intergenic 25.0%
! GGATTTCACTAAAAGTTAAT+CGG + chr6_3:77926555-77926574 None:intergenic 25.0%
! TGAATAAAAAAAATGCGGTT+GGG + chr6_3:77926583-77926602 None:intergenic 25.0%
! AAAACAAGTATACATCACAT+TGG + chr6_3:77926660-77926679 None:intergenic 25.0%
!! TTTTTGTACATTAAACAGCA+TGG - chr6_3:77926806-77926825 Msa0959970:intron 25.0%
!! TAGATTTTTCTTTTTTCTGC+AGG - chr6_3:77927218-77927237 Msa0959970:intron 25.0%
!!! TTTTAGAAGTTTGCATCATA+TGG + chr6_3:77927274-77927293 None:intergenic 25.0%
! ATAATAAGAGTAGAGATACA+TGG - chr6_3:77927422-77927441 Msa0959970:intron 25.0%
!! ACTTCTAAGGAATTCAAAAA+AGG + chr6_3:77927622-77927641 None:intergenic 25.0%
GAATTGTTATATGCAAGTGT+CGG + chr6_3:77921521-77921540 None:intergenic 30.0%
ATTGTCAATATTACTCCCTA+GGG + chr6_3:77921554-77921573 None:intergenic 30.0%
TATTGTCAATATTACTCCCT+AGG + chr6_3:77921555-77921574 None:intergenic 30.0%
! CGATTGATTCATTCATTGAT+TGG - chr6_3:77921687-77921706 Msa0959970:intron 30.0%
ATTCAACACAAAACGTGTTA+TGG + chr6_3:77921779-77921798 None:intergenic 30.0%
TATTTAATGAAGCACGGATA+CGG + chr6_3:77922212-77922231 None:intergenic 30.0%
TATCCGTGCTTCATTAAATA+TGG - chr6_3:77922212-77922231 Msa0959970:intron 30.0%
ATCCGTGCTTCATTAAATAT+GGG - chr6_3:77922213-77922232 Msa0959970:intron 30.0%
TTCCCATATTTAATGAAGCA+CGG + chr6_3:77922218-77922237 None:intergenic 30.0%
CCGTGATTGATATACAATTA+TGG - chr6_3:77922482-77922501 Msa0959970:CDS 30.0%
TTTGGTACTAAATGCGATAA+TGG + chr6_3:77922624-77922643 None:intergenic 30.0%
TTCATCCAAAAATCAAACTC+AGG - chr6_3:77922777-77922796 Msa0959970:intron 30.0%
AGTTGTTTATCCAAGTGATT+GGG + chr6_3:77922807-77922826 None:intergenic 30.0%
AAGTTGTTTATCCAAGTGAT+TGG + chr6_3:77922808-77922827 None:intergenic 30.0%
!! TGTTTTGAATAGTGTAGTTG+TGG - chr6_3:77923025-77923044 Msa0959970:intron 30.0%
TCAAGACTTCAATATATTGG+TGG + chr6_3:77923114-77923133 None:intergenic 30.0%
!! ATTTTGTTATATGTGTAGGC+TGG - chr6_3:77923238-77923257 Msa0959970:intron 30.0%
TTTCATGATGGTTAGTGAAA+TGG - chr6_3:77923425-77923444 Msa0959970:intron 30.0%
ACGTTGAGATGAAATCAATT+TGG - chr6_3:77923619-77923638 Msa0959970:intron 30.0%
!!! TATGTTTTAACAGTGCATCT+TGG - chr6_3:77923867-77923886 Msa0959970:intron 30.0%
! TTCCCATATATTCTCTAAGA+AGG - chr6_3:77923979-77923998 Msa0959970:CDS 30.0%
!!! GTTGTTTTTGATCCATTAGA+CGG - chr6_3:77924266-77924285 Msa0959970:intron 30.0%
ACAAATTTGAGTAGGGATTA+GGG + chr6_3:77924336-77924355 None:intergenic 30.0%
TTGCAAGACAAATTTGAGTA+GGG + chr6_3:77924343-77924362 None:intergenic 30.0%
ATTGCAAGACAAATTTGAGT+AGG + chr6_3:77924344-77924363 None:intergenic 30.0%
! GTTCTTGTTATATGTGTAGA+AGG - chr6_3:77924578-77924597 Msa0959970:intron 30.0%
CAGAATATACCTTAATGTCA+GGG + chr6_3:77924962-77924981 None:intergenic 30.0%
CTAAAGTTGACTACCTTAAT+AGG - chr6_3:77925149-77925168 Msa0959970:intron 30.0%
ACCAGTGTTTAAAAATCACT+CGG - chr6_3:77925185-77925204 Msa0959970:intron 30.0%
CGTCAGTTCAATAAAAAACA+AGG + chr6_3:77925348-77925367 None:intergenic 30.0%
AAATAAGGCAAATTCTACAG+TGG + chr6_3:77925505-77925524 None:intergenic 30.0%
!!! GCCTTATTTTTATCCTAGTT+TGG - chr6_3:77925516-77925535 Msa0959970:intron 30.0%
TAAACATTAATAGAGAGCAG+AGG + chr6_3:77925570-77925589 None:intergenic 30.0%
TTATGTTAATTGTTGGTGTG+TGG - chr6_3:77925656-77925675 Msa0959970:intron 30.0%
GAATAAATCTTGCCTTTCTT+TGG + chr6_3:77925697-77925716 None:intergenic 30.0%
ATATATCTAAGAGACTTTGC+TGG + chr6_3:77925890-77925909 None:intergenic 30.0%
GCAAAGTCTCTTAGATATAT+TGG - chr6_3:77925890-77925909 Msa0959970:intron 30.0%
AGTCTCTTAGATATATTGGA+AGG - chr6_3:77925894-77925913 Msa0959970:intron 30.0%
ATAGCTATTGCTATAAGCTT+TGG + chr6_3:77926059-77926078 None:intergenic 30.0%
! TGAATTTTCATGCTTTTGTG+TGG - chr6_3:77926323-77926342 Msa0959970:intron 30.0%
TACATACACTCTTCACTAAT+GGG + chr6_3:77926417-77926436 None:intergenic 30.0%
ATACATACACTCTTCACTAA+TGG + chr6_3:77926418-77926437 None:intergenic 30.0%
! CCAATTGTTTCAACTTTTGT+GGG + chr6_3:77926457-77926476 None:intergenic 30.0%
! TCCAATTGTTTCAACTTTTG+TGG + chr6_3:77926458-77926477 None:intergenic 30.0%
GATACTTTACACCAATAACA+GGG + chr6_3:77926521-77926540 None:intergenic 30.0%
GTGAATAAAAAAAATGCGGT+TGG + chr6_3:77926584-77926603 None:intergenic 30.0%
AGATATCTTAAGTAAGGTCT+CGG + chr6_3:77926618-77926637 None:intergenic 30.0%
GAACTCAGATATCTTAAGTA+AGG + chr6_3:77926624-77926643 None:intergenic 30.0%
! ACTCTGATGTAAAGTTTGTT+CGG + chr6_3:77927530-77927549 None:intergenic 30.0%
AAGTAGTAAAATCAGCATGT+TGG + chr6_3:77927656-77927675 None:intergenic 30.0%
TAGAAGATTCATCAGTTGAT+TGG + chr6_3:77927719-77927738 None:intergenic 30.0%
GATGAATCTTCTATGATATC+AGG - chr6_3:77927726-77927745 Msa0959970:five_prime_UTR 30.0%
! GATCTTTCATGCAATTTTGT+TGG + chr6_3:77927766-77927785 None:intergenic 30.0%
TCATAGCTACCAAGAAATAT+CGG + chr6_3:77927790-77927809 None:intergenic 30.0%
TGCAAGTAGTGAAAAACAAA+AGG + chr6_3:77927877-77927896 None:intergenic 30.0%
CAAGCATTTATCCAATTGTT+AGG - chr6_3:77927895-77927914 Msa0959970:five_prime_UTR 30.0%
GTATAGGATAAAGTGTGAGA+GGG + chr6_3:77921370-77921389 None:intergenic 35.0%
TGTATAGGATAAAGTGTGAG+AGG + chr6_3:77921371-77921390 None:intergenic 35.0%
AAGTGAATAAGTGAGATGTC+CGG - chr6_3:77921485-77921504 Msa0959970:three_prime_UTR 35.0%
TTGGTACGTACATAGTTGAT+TGG - chr6_3:77921655-77921674 Msa0959970:intron 35.0%
!! CGTACATAGTTGATTGGTTT+CGG - chr6_3:77921661-77921680 Msa0959970:intron 35.0%
TGTTTGTTCTGCTGTTAACA+AGG - chr6_3:77921873-77921892 Msa0959970:intron 35.0%
!!! ATTTTGAGTTACCATGCTCA+GGG - chr6_3:77921968-77921987 Msa0959970:intron 35.0%
TTAAGGACACTCCTCTTATT+AGG - chr6_3:77922316-77922335 Msa0959970:CDS 35.0%
GTTAGTGTTTGTGTTGTATC+TGG - chr6_3:77922444-77922463 Msa0959970:intron 35.0%
TTACATTGCCGTTGTAATTG+TGG - chr6_3:77922534-77922553 Msa0959970:CDS 35.0%
CAGCTTAACCACAATTACAA+CGG + chr6_3:77922545-77922564 None:intergenic 35.0%
! TAAGTGTGTGTTTGGAATTG+CGG - chr6_3:77922590-77922609 Msa0959970:intron 35.0%
TAAAAGGCTAAGACCCTATT+TGG - chr6_3:77922646-77922665 Msa0959970:intron 35.0%
! TAGTAATCTGGAGTTTGGTT+GGG - chr6_3:77922725-77922744 Msa0959970:intron 35.0%
!! GAGAACCTGAGTTTGATTTT+TGG + chr6_3:77922785-77922804 None:intergenic 35.0%
ACATTGCTTTAGCTGCTATT+TGG + chr6_3:77923541-77923560 None:intergenic 35.0%
CCAAATTGTTCATGTGTGTT+TGG + chr6_3:77923661-77923680 None:intergenic 35.0%
CCAAACACACATGAACAATT+TGG - chr6_3:77923658-77923677 Msa0959970:CDS 35.0%
AGATGAGGATGCAATATTTG+TGG - chr6_3:77923900-77923919 Msa0959970:intron 35.0%
CCTTGATTACAACAACATCA+TGG + chr6_3:77924046-77924065 None:intergenic 35.0%
CCATGATGTTGTTGTAATCA+AGG - chr6_3:77924043-77924062 Msa0959970:intron 35.0%
! TGACAGTCTAAAACCTTCTA+CGG - chr6_3:77924169-77924188 Msa0959970:CDS 35.0%
ATTGATTGTGGTGTTTCCAT+TGG - chr6_3:77924299-77924318 Msa0959970:intron 35.0%
GACAAATTTGAGTAGGGATT+AGG + chr6_3:77924337-77924356 None:intergenic 35.0%
CCATACTAACTGTATATTGC+CGG - chr6_3:77924610-77924629 Msa0959970:intron 35.0%
GCAAAATGTTCAATTGACAC+CGG + chr6_3:77924632-77924651 None:intergenic 35.0%
! CATCATCTATGATTGGTTCA+TGG + chr6_3:77924686-77924705 None:intergenic 35.0%
TGCAGAACATCATCTATGAT+TGG + chr6_3:77924693-77924712 None:intergenic 35.0%
GCAGAATATACCTTAATGTC+AGG + chr6_3:77924963-77924982 None:intergenic 35.0%
!! ATACGAACTTGCTCATTTTG+AGG - chr6_3:77925120-77925139 Msa0959970:intron 35.0%
!! TTTTAAACACTGGTCTACCA+TGG + chr6_3:77925179-77925198 None:intergenic 35.0%
! TCCGAGTGATTTTTAAACAC+TGG + chr6_3:77925189-77925208 None:intergenic 35.0%
GTGTCAATTCGACAAATTCA+AGG - chr6_3:77925281-77925300 Msa0959970:intron 35.0%
!!! GATTTTCAAGTACCAGTCTA+TGG - chr6_3:77925458-77925477 Msa0959970:CDS 35.0%
!! GTCAAGCTCTAAACATATAC+TGG + chr6_3:77925548-77925567 None:intergenic 35.0%
AAATGCAAGTTTCCAACAGA+TGG - chr6_3:77925860-77925879 Msa0959970:intron 35.0%
AGCATGTTAGACTCTTTCTA+GGG + chr6_3:77925936-77925955 None:intergenic 35.0%
AAGCATGTTAGACTCTTTCT+AGG + chr6_3:77925937-77925956 None:intergenic 35.0%
CAGGAAAACAATAAGCTCTT+TGG + chr6_3:77926147-77926166 None:intergenic 35.0%
AGACTCAAGAAGCTGAAAAA+TGG + chr6_3:77926351-77926370 None:intergenic 35.0%
TGTGATCTGTTCATAACTCT+TGG - chr6_3:77926374-77926393 Msa0959970:intron 35.0%
TTTGTGGGCAATAACTAATG+AGG + chr6_3:77926442-77926461 None:intergenic 35.0%
CCCACAAAAGTTGAAACAAT+TGG - chr6_3:77926454-77926473 Msa0959970:intron 35.0%
AAACCAAGTGCATAGAATAG+AGG + chr6_3:77926487-77926506 None:intergenic 35.0%
GGATACTTTACACCAATAAC+AGG + chr6_3:77926522-77926541 None:intergenic 35.0%
TAAAAAAAATGCGGTTGGGA+TGG + chr6_3:77926579-77926598 None:intergenic 35.0%
GATATCTTAAGTAAGGTCTC+GGG + chr6_3:77926617-77926636 None:intergenic 35.0%
GTTCATCGTACATTGCTATA+TGG - chr6_3:77926837-77926856 Msa0959970:intron 35.0%
AGAGTCCAAATGGAAAACTT+CGG - chr6_3:77926889-77926908 Msa0959970:intron 35.0%
! ACATACCGAAGTTTTCCATT+TGG + chr6_3:77926897-77926916 None:intergenic 35.0%
GTATGGAAATTAGCATAACG+TGG - chr6_3:77927462-77927481 Msa0959970:intron 35.0%
AGTTGCTCATAGCTTAGTTA+GGG + chr6_3:77927493-77927512 None:intergenic 35.0%
TAGTTGCTCATAGCTTAGTT+AGG + chr6_3:77927494-77927513 None:intergenic 35.0%
!! GGATGAGTTCTAAACTTCTA+AGG + chr6_3:77927635-77927654 None:intergenic 35.0%
GAAAGATCTCCGATATTTCT+TGG - chr6_3:77927778-77927797 Msa0959970:five_prime_UTR 35.0%
! ACTTGTTAATGTGTTTGCCA+TGG - chr6_3:77927984-77928003 Msa0959970:five_prime_UTR 35.0%
AATGTGCTATGTGAGGAGAA+GGG + chr6_3:77921344-77921363 None:intergenic 40.0%
GTAAAATCTCCACGTGATTC+AGG + chr6_3:77921817-77921836 None:intergenic 40.0%
TGTTCTGCTGTTAACAAGGT+TGG - chr6_3:77921877-77921896 Msa0959970:intron 40.0%
ACGTCAAGTGCGAAAACTTA+TGG + chr6_3:77921940-77921959 None:intergenic 40.0%
!!! GATTTTGAGTTACCATGCTC+AGG - chr6_3:77921967-77921986 Msa0959970:intron 40.0%
! TCTGAGACATGCCTAATAAG+AGG + chr6_3:77922330-77922349 None:intergenic 40.0%
! CTCAGTTTTCAGACATGTGT+TGG - chr6_3:77922352-77922371 Msa0959970:CDS 40.0%
GGAGACTTTAAGTGTGTGTT+TGG - chr6_3:77922582-77922601 Msa0959970:intron 40.0%
!! GGGTCTTAGCCTTTTATGTT+TGG + chr6_3:77922642-77922661 None:intergenic 40.0%
ACCCTAGTTTCTTTGACAAG+CGG - chr6_3:77922699-77922718 Msa0959970:intron 40.0%
CAACCAAACTCCAGATTACT+AGG + chr6_3:77922726-77922745 None:intergenic 40.0%
! CTAGTAATCTGGAGTTTGGT+TGG - chr6_3:77922724-77922743 Msa0959970:intron 40.0%
TATGTTCTCCTGATGAGTTG+TGG - chr6_3:77922976-77922995 Msa0959970:intron 40.0%
GATTGTGACTGTTGCAGTAA+TGG - chr6_3:77923132-77923151 Msa0959970:intron 40.0%
GGAAACACTTACCTGAACAT+TGG + chr6_3:77923296-77923315 None:intergenic 40.0%
CATGATGGTTAGTGAAATGG+AGG - chr6_3:77923428-77923447 Msa0959970:intron 40.0%
TGGTTAGTGAAATGGAGGTT+TGG - chr6_3:77923433-77923452 Msa0959970:intron 40.0%
GGTCTGTTCAAATTCTGCTA+CGG + chr6_3:77923572-77923591 None:intergenic 40.0%
TCGCAGATCACAACATATAG+TGG + chr6_3:77923593-77923612 None:intergenic 40.0%
!! TTCCAATGAGGTGTTTTGCA+AGG - chr6_3:77923751-77923770 Msa0959970:intron 40.0%
! CTTGGTTTCTGAAGAAGATG+AGG - chr6_3:77923885-77923904 Msa0959970:intron 40.0%
! ATTTTGTCGTGGTTGCATTG+TGG - chr6_3:77924020-77924039 Msa0959970:intron 40.0%
CAGTTAAACTTCTCCGTAGA+AGG + chr6_3:77924185-77924204 None:intergenic 40.0%
AACACCACAATCAATGTTGG+AGG + chr6_3:77924294-77924313 None:intergenic 40.0%
GGAAACACCACAATCAATGT+TGG + chr6_3:77924297-77924316 None:intergenic 40.0%
TAGGGATCATACAGTTCCAA+TGG + chr6_3:77924318-77924337 None:intergenic 40.0%
TCACAGACACTTCATATCGA+AGG - chr6_3:77924378-77924397 Msa0959970:intron 40.0%
! ATATCGAAGGCATGTATGTC+TGG - chr6_3:77924391-77924410 Msa0959970:intron 40.0%
TCATGTCTAGTGTTTGTGTC+AGG - chr6_3:77924519-77924538 Msa0959970:intron 40.0%
CCGGCAATATACAGTTAGTA+TGG + chr6_3:77924613-77924632 None:intergenic 40.0%
ATAGATGATGTTCTGCAACC+AGG - chr6_3:77924696-77924715 Msa0959970:CDS 40.0%
TAGATGATGTTCTGCAACCA+GGG - chr6_3:77924697-77924716 Msa0959970:CDS 40.0%
TTGCAGTTTGTGATAACCAC+TGG - chr6_3:77924879-77924898 Msa0959970:intron 40.0%
TTTGTGATAACCACTGGAAG+TGG - chr6_3:77924885-77924904 Msa0959970:intron 40.0%
TTCATGGAACTAGCACTACT+AGG - chr6_3:77925095-77925114 Msa0959970:CDS 40.0%
CTACCTTAATAGGTTGTCCA+TGG - chr6_3:77925159-77925178 Msa0959970:intron 40.0%
CTACCATGGACAACCTATTA+AGG + chr6_3:77925165-77925184 None:intergenic 40.0%
TGCTTAGACAGTGACTTAAC+TGG + chr6_3:77925371-77925390 None:intergenic 40.0%
TTCCAAACTCCAAAAACGAC+AGG + chr6_3:77925437-77925456 None:intergenic 40.0%
! TTTCAAGTACCAGTCTATGG+TGG - chr6_3:77925461-77925480 Msa0959970:CDS 40.0%
CTACAGTGGATCAATTCGAT+AGG + chr6_3:77925491-77925510 None:intergenic 40.0%
!! ATACTGGTTTCGACCAAACT+AGG + chr6_3:77925532-77925551 None:intergenic 40.0%
TCTTTGCAGATCCCAAAGAA+AGG - chr6_3:77925682-77925701 Msa0959970:intron 40.0%
ATGCTTACTGCCCATGTATT+AGG - chr6_3:77925951-77925970 Msa0959970:intron 40.0%
CCAAACAAGGCCTAATACAT+GGG + chr6_3:77925964-77925983 None:intergenic 40.0%
TCCAAACAAGGCCTAATACA+TGG + chr6_3:77925965-77925984 None:intergenic 40.0%
GTCTGAGTTCATAAGCTCTT+TGG + chr6_3:77926198-77926217 None:intergenic 40.0%
AAGCCTCTATTCTATGCACT+TGG - chr6_3:77926481-77926500 Msa0959970:intron 40.0%
AAGTTAATCGGTAAAGTCGG+TGG + chr6_3:77926543-77926562 None:intergenic 40.0%
TATCTGAGTTCAGTTCCACT+CGG - chr6_3:77926633-77926652 Msa0959970:intron 40.0%
CATCGTACATTGCTATATGG+AGG - chr6_3:77926840-77926859 Msa0959970:intron 40.0%
TTTGTCAGCAGGGTACAAAA+AGG + chr6_3:77926868-77926887 None:intergenic 40.0%
! TTGGACTCTTTTTGTCAGCA+GGG + chr6_3:77926878-77926897 None:intergenic 40.0%
! TTTGGACTCTTTTTGTCAGC+AGG + chr6_3:77926879-77926898 None:intergenic 40.0%
GCTGACAAAAAGAGTCCAAA+TGG - chr6_3:77926879-77926898 Msa0959970:intron 40.0%
GTTCCATCAAGAAGGACATT+GGG + chr6_3:77927032-77927051 None:intergenic 40.0%
TGTTCCATCAAGAAGGACAT+TGG + chr6_3:77927033-77927052 None:intergenic 40.0%
AATGTCCTTCTTGATGGAAC+AGG - chr6_3:77927032-77927051 Msa0959970:intron 40.0%
TGGTAGCTATGATGATATCG+AGG - chr6_3:77927798-77927817 Msa0959970:five_prime_UTR 40.0%
! GCACTTGTTAGCCTAACAAT+TGG + chr6_3:77927909-77927928 None:intergenic 40.0%
ATGTGCTATGTGAGGAGAAG+GGG + chr6_3:77921343-77921362 None:intergenic 45.0%
CAATGTGCTATGTGAGGAGA+AGG + chr6_3:77921345-77921364 None:intergenic 45.0%
CTTCTCCTCACATAGCACAT+TGG - chr6_3:77921343-77921362 Msa0959970:three_prime_UTR 45.0%
!! AAGTGTCGGTGTTTGAACTC+CGG + chr6_3:77921507-77921526 None:intergenic 45.0%
AATATTACTCCCTAGGGCGT+GGG + chr6_3:77921548-77921567 None:intergenic 45.0%
TCTAAGCATCCTGAATCACG+TGG - chr6_3:77921805-77921824 Msa0959970:intron 45.0%
TCTGCTGTTAACAAGGTTGG+TGG - chr6_3:77921880-77921899 Msa0959970:intron 45.0%
CATGAAGCACGAACACTTCT+CGG - chr6_3:77922071-77922090 Msa0959970:intron 45.0%
ATCAGTGTCCATGTCATGTC+CGG - chr6_3:77922177-77922196 Msa0959970:intron 45.0%
GGCTGAAGAGACATCAAAAG+TGG - chr6_3:77922503-77922522 Msa0959970:CDS 45.0%
CCCGCTTGTCAAAGAAACTA+GGG + chr6_3:77922703-77922722 None:intergenic 45.0%
CCCTAGTTTCTTTGACAAGC+GGG - chr6_3:77922700-77922719 Msa0959970:intron 45.0%
! TAATCTGGAGTTTGGTTGGG+AGG - chr6_3:77922728-77922747 Msa0959970:intron 45.0%
! AATCTGGAGTTTGGTTGGGA+GGG - chr6_3:77922729-77922748 Msa0959970:intron 45.0%
CTCTGATACCACAACTCATC+AGG + chr6_3:77922987-77923006 None:intergenic 45.0%
GCTGGATGTTCTTTCCAATG+AGG - chr6_3:77923739-77923758 Msa0959970:intron 45.0%
AGCCTTGCAAAACACCTCAT+TGG + chr6_3:77923756-77923775 None:intergenic 45.0%
! TGCAAGGCTTTGATAAGCAG+TGG - chr6_3:77923767-77923786 Msa0959970:intron 45.0%
AACAACTTTCCACGCTGCTT+AGG + chr6_3:77923928-77923947 None:intergenic 45.0%
! TTCCAGTAGCGATTTTGTCG+TGG - chr6_3:77924009-77924028 Msa0959970:intron 45.0%
AACCACGACAAAATCGCTAC+TGG + chr6_3:77924014-77924033 None:intergenic 45.0%
TTTCTGTGTCATGCCGGTAT+CGG + chr6_3:77924437-77924456 None:intergenic 45.0%
CACACATTTCTGTGTCATGC+CGG + chr6_3:77924443-77924462 None:intergenic 45.0%
GCAGCTGGTTATTGCATGTA+CGG - chr6_3:77924732-77924751 Msa0959970:intron 45.0%
CAGCAGATCCCGTATTGTAA+TGG + chr6_3:77924857-77924876 None:intergenic 45.0%
CATTACAATACGGGATCTGC+TGG - chr6_3:77924855-77924874 Msa0959970:intron 45.0%
! ACCACTGGAAGTGGTGTTAA+TGG - chr6_3:77924894-77924913 Msa0959970:intron 45.0%
ACCATTAACACCACTTCCAG+TGG + chr6_3:77924898-77924917 None:intergenic 45.0%
GGATAAACTCGCCAAGAGAA+GGG + chr6_3:77924932-77924951 None:intergenic 45.0%
AGGATAAACTCGCCAAGAGA+AGG + chr6_3:77924933-77924952 None:intergenic 45.0%
CCTTAATGTCAGGGTGAGTT+AGG + chr6_3:77924953-77924972 None:intergenic 45.0%
CCTAACTCACCCTGACATTA+AGG - chr6_3:77924950-77924969 Msa0959970:intron 45.0%
AACTTTCGTTAGAGCTGAGC+AGG + chr6_3:77925043-77925062 None:intergenic 45.0%
! TGCTCAGCTCTAACGAAAGT+TGG - chr6_3:77925042-77925061 Msa0959970:intron 45.0%
! GCTCAGCTCTAACGAAAGTT+GGG - chr6_3:77925043-77925062 Msa0959970:intron 45.0%
!! CGAACTTGCTCATTTTGAGG+CGG - chr6_3:77925123-77925142 Msa0959970:intron 45.0%
!!! GAACTTGCTCATTTTGAGGC+GGG - chr6_3:77925124-77925143 Msa0959970:intron 45.0%
!!! AACTTGCTCATTTTGAGGCG+GGG - chr6_3:77925125-77925144 Msa0959970:intron 45.0%
TGTGAGCTTCTACTGCCAAT+GGG + chr6_3:77925234-77925253 None:intergenic 45.0%
TCCTCGTCTTTATGGTGACT+TGG - chr6_3:77925255-77925274 Msa0959970:intron 45.0%
ACCAAGTCACCATAAAGACG+AGG + chr6_3:77925259-77925278 None:intergenic 45.0%
AAGTCACTGTCTAAGCAACG+AGG - chr6_3:77925374-77925393 Msa0959970:intron 45.0%
AGTCACTGTCTAAGCAACGA+GGG - chr6_3:77925375-77925394 Msa0959970:intron 45.0%
TGTGAGCTTCTACTTCCAGA+AGG - chr6_3:77925406-77925425 Msa0959970:intron 45.0%
!!! AAGGCAATGCCTGTCGTTTT+TGG - chr6_3:77925425-77925444 Msa0959970:intron 45.0%
!!! TGCCTGTCGTTTTTGGAGTT+TGG - chr6_3:77925432-77925451 Msa0959970:intron 45.0%
ATAGGTGATCCACCATAGAC+TGG + chr6_3:77925473-77925492 None:intergenic 45.0%
ATGAAGGGAATGCCAAGAAC+TGG - chr6_3:77925722-77925741 Msa0959970:intron 45.0%
TGAAGGGAATGCCAAGAACT+GGG - chr6_3:77925723-77925742 Msa0959970:intron 45.0%
CTGAATTCATACGTACGCAG+CGG + chr6_3:77925758-77925777 None:intergenic 45.0%
TTTGCTGGTGAACCATCTGT+TGG + chr6_3:77925875-77925894 None:intergenic 45.0%
!! CCCATGTATTAGGCCTTGTT+TGG - chr6_3:77925961-77925980 Msa0959970:intron 45.0%
! ACTCTTCACTAATGGGTCAG+TGG + chr6_3:77926410-77926429 None:intergenic 45.0%
AAAAAATGCGGTTGGGATGG+AGG + chr6_3:77926576-77926595 None:intergenic 45.0%
ATACATCACATTGGTCCGAG+TGG + chr6_3:77926651-77926670 None:intergenic 45.0%
CTTCCCAATGTCCTTCTTGA+TGG - chr6_3:77927026-77927045 Msa0959970:intron 45.0%
ATGCATTACCCTTTCCTTGC+CGG + chr6_3:77927076-77927095 None:intergenic 45.0%
CAAAGCTCTTTATGCTGCAG+AGG - chr6_3:77927825-77927844 Msa0959970:five_prime_UTR 45.0%
TGCTGCAGAGGCTAAATAAG+AGG - chr6_3:77927837-77927856 Msa0959970:five_prime_UTR 45.0%
!!! GGTGGTGGGTTCGATGTTTT+GGG + chr6_3:77921316-77921335 None:intergenic 50.0%
!!! TGGTGGTGGGTTCGATGTTT+TGG + chr6_3:77921317-77921336 None:intergenic 50.0%
TATGTGAGGAGAAGGGGGAA+TGG + chr6_3:77921337-77921356 None:intergenic 50.0%
TGTGCTATGTGAGGAGAAGG+GGG + chr6_3:77921342-77921361 None:intergenic 50.0%
AGGGACCAATGTGCTATGTG+AGG + chr6_3:77921351-77921370 None:intergenic 50.0%
AATTCATGTCCCACGCCCTA+GGG - chr6_3:77921536-77921555 Msa0959970:CDS 50.0%
CAATATTACTCCCTAGGGCG+TGG + chr6_3:77921549-77921568 None:intergenic 50.0%
GTCTCCACAACAACGCAGAT+TGG + chr6_3:77922568-77922587 None:intergenic 50.0%
! GTGTGTGTTTGGAATTGCGG+TGG - chr6_3:77922593-77922612 Msa0959970:intron 50.0%
GCCCGCTTGTCAAAGAAACT+AGG + chr6_3:77922704-77922723 None:intergenic 50.0%
! GGGCCTAGTAATCTGGAGTT+TGG - chr6_3:77922720-77922739 Msa0959970:intron 50.0%
CTCAGGTTCTCCCAATCACT+TGG - chr6_3:77922794-77922813 Msa0959970:intron 50.0%
!! GCTGGTCTTGCAAAGCTCAT+TGG - chr6_3:77923256-77923275 Msa0959970:intron 50.0%
GCAAAGCTCATTGGACTTGC+TGG - chr6_3:77923265-77923284 Msa0959970:intron 50.0%
TGCTGGAGAGACCAATGTTC+AGG - chr6_3:77923282-77923301 Msa0959970:intron 50.0%
AGCAGTGGCAGAACAGTAAG+TGG - chr6_3:77923782-77923801 Msa0959970:intron 50.0%
TTTGTGGATCCTAAGCAGCG+TGG - chr6_3:77923916-77923935 Msa0959970:intron 50.0%
ATGTTGGAGGAGCCGTCTAA+TGG + chr6_3:77924281-77924300 None:intergenic 50.0%
! GGCTCCTCCAACATTGATTG+TGG - chr6_3:77924287-77924306 Msa0959970:intron 50.0%
GCTGCTAACATGTTCTTCCC+TGG + chr6_3:77924717-77924736 None:intergenic 50.0%
GGGAAGAACATGTTAGCAGC+TGG - chr6_3:77924717-77924736 Msa0959970:CDS 50.0%
CATGTACGGAAGCTCTTGCA+CGG - chr6_3:77924746-77924765 Msa0959970:intron 50.0%
TTCACTCTCGACCCTTCTCT+TGG - chr6_3:77924918-77924937 Msa0959970:intron 50.0%
CTACTGCCAATGGGCGTATT+CGG + chr6_3:77925225-77925244 None:intergenic 50.0%
GTGTGAGCTTCTACTGCCAA+TGG + chr6_3:77925235-77925254 None:intergenic 50.0%
GCTCACACTCCTCGTCTTTA+TGG - chr6_3:77925247-77925266 Msa0959970:intron 50.0%
! AAACGACAGGCATTGCCTTC+TGG + chr6_3:77925424-77925443 None:intergenic 50.0%
ATTCATACGTACGCAGCGGT+AGG + chr6_3:77925754-77925773 None:intergenic 50.0%
TCCTTCTTGATGGAACAGGC+AGG - chr6_3:77927036-77927055 Msa0959970:intron 50.0%
TCCTGCCTGTTCCATCAAGA+AGG + chr6_3:77927040-77927059 None:intergenic 50.0%
TTCTTGATGGAACAGGCAGG+AGG - chr6_3:77927039-77927058 Msa0959970:intron 50.0%
CAATTCATGTCCCACGCCCT+AGG - chr6_3:77921535-77921554 Msa0959970:CDS 55.0%
TACGATGTGCATCTGCGCTG+TGG + chr6_3:77921744-77921763 None:intergenic 55.0%
ATCAGTGGTGACCCTGAGCA+TGG + chr6_3:77921982-77922001 None:intergenic 55.0%
GAAGCACGAACACTTCTCGG+AGG - chr6_3:77922074-77922093 Msa0959970:intron 55.0%
CACAGACACCGGACATGACA+TGG + chr6_3:77922188-77922207 None:intergenic 55.0%
ACGGATACGGACACAGACAC+CGG + chr6_3:77922199-77922218 None:intergenic 55.0%
GCTGCCAATCTGCGTTGTTG+TGG - chr6_3:77922561-77922580 Msa0959970:intron 55.0%
GACAAGCGGGCCTAGTAATC+TGG - chr6_3:77922713-77922732 Msa0959970:intron 55.0%
GGGTGAAGAGCAGAAGAAGC+TGG - chr6_3:77923721-77923740 Msa0959970:intron 55.0%
CGTGTGTCTGTGTCCGATAC+CGG - chr6_3:77924421-77924440 Msa0959970:CDS 55.0%
TTCGTTAGAGCTGAGCAGGC+AGG + chr6_3:77925039-77925058 None:intergenic 55.0%
CAACGACCGAATACGCCCAT+TGG - chr6_3:77925216-77925235 Msa0959970:intron 55.0%
GGGAATGCCAAGAACTGGGA+TGG - chr6_3:77925727-77925746 Msa0959970:intron 55.0%
GGTAGGACCATCCCAGTTCT+TGG + chr6_3:77925737-77925756 None:intergenic 55.0%
AGGCTTTCACCGGCAAGGAA+AGG - chr6_3:77927064-77927083 Msa0959970:intron 55.0%
GGCTTTCACCGGCAAGGAAA+GGG - chr6_3:77927065-77927084 Msa0959970:intron 55.0%
GGAGAAGGGGGAATGGTGGT+GGG + chr6_3:77921330-77921349 None:intergenic 60.0%
AGGAGAAGGGGGAATGGTGG+TGG + chr6_3:77921331-77921350 None:intergenic 60.0%
GTGAGGAGAAGGGGGAATGG+TGG + chr6_3:77921334-77921353 None:intergenic 60.0%
TTAGAGCTGAGCAGGCAGGC+AGG + chr6_3:77925035-77925054 None:intergenic 60.0%
GATGGAACAGGCAGGAGGAC+AGG - chr6_3:77927044-77927063 Msa0959970:intron 60.0%
GCAGGAGGACAGGCTTTCAC+CGG - chr6_3:77927054-77927073 Msa0959970:intron 60.0%
AGGACAGGCTTTCACCGGCA+AGG - chr6_3:77927059-77927078 Msa0959970:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 77921312 77928078 77921312 ID=Msa0959970;Name=Msa0959970
chr6_3 mRNA 77921312 77928078 77921312 ID=Msa0959970-mRNA-1;Parent=Msa0959970;Name=Msa0959970-mRNA-1;_AED=0.19;_eAED=0.19;_QI=424|0.76|0.85|0.85|1|1|14|223|413
chr6_3 exon 77921312 77921642 77921312 ID=Msa0959970-mRNA-1:exon:13988;Parent=Msa0959970-mRNA-1
chr6_3 exon 77922304 77922379 77922304 ID=Msa0959970-mRNA-1:exon:13987;Parent=Msa0959970-mRNA-1
chr6_3 exon 77922480 77922566 77922480 ID=Msa0959970-mRNA-1:exon:13986;Parent=Msa0959970-mRNA-1
chr6_3 exon 77923475 77923540 77923475 ID=Msa0959970-mRNA-1:exon:13985;Parent=Msa0959970-mRNA-1
chr6_3 exon 77923629 77923699 77923629 ID=Msa0959970-mRNA-1:exon:13984;Parent=Msa0959970-mRNA-1
chr6_3 exon 77923924 77924018 77923924 ID=Msa0959970-mRNA-1:exon:13983;Parent=Msa0959970-mRNA-1
chr6_3 exon 77924122 77924248 77924122 ID=Msa0959970-mRNA-1:exon:13982;Parent=Msa0959970-mRNA-1
chr6_3 exon 77924419 77924505 77924419 ID=Msa0959970-mRNA-1:exon:13981;Parent=Msa0959970-mRNA-1
chr6_3 exon 77924623 77924736 77924623 ID=Msa0959970-mRNA-1:exon:13980;Parent=Msa0959970-mRNA-1
chr6_3 exon 77925065 77925131 77925065 ID=Msa0959970-mRNA-1:exon:13979;Parent=Msa0959970-mRNA-1
chr6_3 exon 77925449 77925510 77925449 ID=Msa0959970-mRNA-1:exon:13978;Parent=Msa0959970-mRNA-1
chr6_3 exon 77925594 77925668 77925594 ID=Msa0959970-mRNA-1:exon:13977;Parent=Msa0959970-mRNA-1
chr6_3 exon 77926087 77926134 77926087 ID=Msa0959970-mRNA-1:exon:13976;Parent=Msa0959970-mRNA-1
chr6_3 exon 77927496 77928078 77927496 ID=Msa0959970-mRNA-1:exon:13975;Parent=Msa0959970-mRNA-1
chr6_3 five_prime_UTR 77927655 77928078 77927655 ID=Msa0959970-mRNA-1:five_prime_utr;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77927496 77927654 77927496 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77926087 77926134 77926087 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77925594 77925668 77925594 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77925449 77925510 77925449 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77925065 77925131 77925065 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77924623 77924736 77924623 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77924419 77924505 77924419 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77924122 77924248 77924122 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77923924 77924018 77923924 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77923629 77923699 77923629 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77923475 77923540 77923475 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77922480 77922566 77922480 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77922304 77922379 77922304 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 CDS 77921535 77921642 77921535 ID=Msa0959970-mRNA-1:cds;Parent=Msa0959970-mRNA-1
chr6_3 three_prime_UTR 77921312 77921534 77921312 ID=Msa0959970-mRNA-1:three_prime_utr;Parent=Msa0959970-mRNA-1
Gene Sequence

>Msa0959970

ATGGACCACAGCGCAGATGCACATCGTACAGACTTGATGACCATAACACGTTTTGTGTTGAATGAACAGTCTAAGCATCCTGAATCACGTGGAGATTTTACCATCTTGCTTAATAACATTGTTCTTGGTTGCAAATTTGTTTGTTCTGCTGTTAACAAGGCTGGTCTTGCAAAGCTCATTGGACTTGCTGGAGAGACCAATGTTCAGGGTGAAGAGCAGAAGAAGCTGGATGTTCTTTCCAATGAGGTGTTTTGCAAGGCTTTGATAAGCAGTGGCAGAACATGCATCTTGGTTTCTGAAGAAGATGAGGATGCAATATTTGTGGATCCTAAGCAGCGTGGAAAGTACTGTGTTGTTTTTGATCCATTAGACGGCTCCTCCAACATTGATTGTGGTGTTTCCATTGGAACTATTTTTGGGATTTATATGATGAAAGATAACCATGAACCAATCATAGATGATGTTCTGCAACCAGGGAAGAACATGTTAGCAGCTGGTTATTGCATGTACGGAAGCTCTTGCACGTTTGTGATAACCACTGGAAGTGGTGTTAATGGTTTCACTCTCGACCCTTCTCTTGGCGAGTTTATCCTAACTCACCCTGACATTAAGGCGGGGTCTAAAGTTGACTACCTTAATAGGTTGTCCATGGTAGACCAGTGTTTAAAAATCACTCGGAAATCTAACAACGACCGAATACGCCCATTGGCAGTAGAAGCTCACACTCCTCGTCTTTATGTTAAGTCACTGTCTAAGCAACGAGGGCAAGAAGATGTGAGCTTCTACTTCCAGAAGGCAATGCCTGTCGTTTTTGGAGTTTGGAATGATTTTCAAATCCCAAAGAAAGGCAAGATTTATTCAGTGAATGAAGGGAATGCCAAGAACTGGGATGGTCCTACCGCTGCTTATGTGGAGAAATGCAAGTTTCCAACAGATGGTTCACCAGCAAAGTCTCTTAGATATATTGGAAGCATGGTAGCTGATGTTCATCGTACATTGCTATATGGAGGTACCTTTTTGTACCCTGCTGACAAAAAGAGTCCAAATGGAAAACTTCGTGTATTGTATGAAGTCTTCCCAATGTCCTTCTTGATGGAACAGGCAGGAGGACAGGCTTTCACCGGCAAGGAAAGGGCACTTGATTTAATTCCAACAAAATTGCATGAAAGATCTCCGATATTTCTTGGTAGCTATGATGATATCGAGGAAATCAAAGCTCTTTATGCTGCAGAGGCTAAATAA

Protein sequence

>Msa0959970

MDHSADAHRTDLMTITRFVLNEQSKHPESRGDFTILLNNIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNEVFCKALISSGRTCILVSEEDEDAIFVDPKQRGKYCVVFDPLDGSSNIDCGVSIGTIFGIYMMKDNHEPIIDDVLQPGKNMLAAGYCMYGSSCTFVITTGSGVNGFTLDPSLGEFILTHPDIKAGSKVDYLNRLSMVDQCLKITRKSNNDRIRPLAVEAHTPRLYVKSLSKQRGQEDVSFYFQKAMPVVFGVWNDFQIPKKGKIYSVNEGNAKNWDGPTAAYVEKCKFPTDGSPAKSLRYIGSMVADVHRTLLYGGTFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQAFTGKERALDLIPTKLHERSPIFLGSYDDIEEIKALYAAEAK*