AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619060 MtrunA17_Chr8g0383751 95.753 259 8 1 1 259 10 265 0.0 500
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619060 AT5G09820.2 54.902 255 99 2 12 254 21 271 1.43e-90 269
Msa0619060 AT5G09820.1 54.506 233 90 2 12 232 21 249 2.32e-78 238
Msa0619060 AT5G09820.3 51.042 192 78 2 12 191 21 208 8.21e-54 174
Msa0619060 AT4G22240.1 30.131 229 116 7 61 250 77 300 3.32e-17 80.1
Msa0619060 AT4G04020.1 28.829 222 109 7 70 250 95 308 5.50e-16 76.6
Msa0619060 AT3G26070.1 30.348 201 96 8 64 254 69 235 1.64e-14 71.2

Find 81 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGCACTATCTCTATTT+TGG 0.111980 4_2:-70093777 Msa0619060:CDS
TATTCTGTATTTGATCTTAA+AGG 0.149815 4_2:-70094541 Msa0619060:five_prime_UTR
AAAAGGGTGTCTCAAAATTT+TGG 0.199940 4_2:+70094627 None:intergenic
AGTAGGAGATTTAACTGTTT+TGG 0.236034 4_2:+70092933 None:intergenic
GAAGTTAGAAATTGAAAGTT+TGG 0.249564 4_2:-70094106 Msa0619060:CDS
GGAATCAACAGAGGGATATT+TGG 0.264142 4_2:-70094144 Msa0619060:CDS
ATCATGAAACTTCAAAGATT+TGG 0.272932 4_2:-70094449 Msa0619060:CDS
TGGATAAACACTTCAAGATT+TGG 0.298180 4_2:-70094407 Msa0619060:CDS
TCTAGTTCTAGAGTTGGTTC+TGG 0.326515 4_2:+70094054 None:intergenic
TTGAAGTTTCATGATATTCA+TGG 0.326931 4_2:+70094457 None:intergenic
CACAGTTGATGAACGTGTTT+CGG 0.335145 4_2:-70092691 Msa0619060:intron
TGTTGGCCATGATTCATTCT+AGG 0.344158 4_2:-70092212 Msa0619060:three_prime_UTR
GATTTGGTGAGAAGCCATTA+TGG 0.349218 4_2:-70094391 Msa0619060:CDS
CAAATACAGAATAATGAAAC+AGG 0.355653 4_2:+70094551 None:intergenic
AAAGTTGCAGAACAATCTTC+TGG 0.358341 4_2:-70094347 Msa0619060:CDS
CCAATGCAATAAAGTCTCTT+AGG 0.361573 4_2:+70093732 None:intergenic
GACCACCTAGTAATCTTTCA+TGG 0.363929 4_2:-70094427 Msa0619060:CDS
CTAAGAGACTTTATTGCATT+GGG 0.375979 4_2:-70093731 Msa0619060:CDS
GCAACTTTAATGATAGTAAT+GGG 0.377037 4_2:+70094362 None:intergenic
TCTAGAGTTGGTTCTGGAGT+TGG 0.385057 4_2:+70094060 None:intergenic
GGATCAAGAAGGACAAAGTT+AGG 0.406396 4_2:-70093755 Msa0619060:CDS
GTGATCAAGTTCAATGCAAA+AGG 0.408117 4_2:-70093009 Msa0619060:CDS
CCTAAGAGACTTTATTGCAT+TGG 0.415989 4_2:-70093732 Msa0619060:CDS
CGAAGTTTGTTTCGACATAG+TGG 0.440289 4_2:-70092288 Msa0619060:three_prime_UTR
TCTTTGTAATATACCTGATC+AGG 0.443928 4_2:+70092799 None:intergenic
GGAAGGTGGATGGGTGTTGG+AGG 0.446955 4_2:-70093805 Msa0619060:intron
TTCCACAATCACTCCTGATC+AGG 0.448356 4_2:-70092812 Msa0619060:intron
TGCAACTTTAATGATAGTAA+TGG 0.449400 4_2:+70094361 None:intergenic
AAGAGAGCTTTACCAGGCTC+TGG 0.452031 4_2:-70094285 Msa0619060:CDS
TGATTCTCATGTGAGTCCTC+TGG 0.455246 4_2:-70094489 Msa0619060:CDS
GAATAATGAAACAGGGTAGA+AGG 0.456722 4_2:+70094559 None:intergenic
GTAATGGGTCTAAACCATAA+TGG 0.465210 4_2:+70094377 None:intergenic
CAAAGGCAATATCTTTGTGT+TGG 0.468289 4_2:-70092437 Msa0619060:CDS
GGGGTTGTGTCGAGCGGAAG+GGG 0.469291 4_2:+70092257 None:intergenic
GGGATATTTGGAATTCCATC+TGG 0.474487 4_2:-70094132 Msa0619060:CDS
GTTGATGACAACATGAGAAT+AGG 0.478063 4_2:-70092469 Msa0619060:CDS
TTTATCCATGAAAGATTACT+AGG 0.478881 4_2:+70094422 None:intergenic
ACATGAGAATCATTCATTGA+TGG 0.480197 4_2:+70094500 None:intergenic
ACTGGAAGGTGGATGGGTGT+TGG 0.486174 4_2:-70093808 Msa0619060:intron
GCAGAACAATCTTCTGGCTA+TGG 0.491323 4_2:-70094341 Msa0619060:CDS
ACCTTCTCTAGTTCTAGAGT+TGG 0.492031 4_2:+70094048 None:intergenic
GACAAAATTACTTTCCGTGA+AGG 0.498911 4_2:+70092358 None:intergenic
TTCTATTACTGGAAGGTGGA+TGG 0.515531 4_2:-70093815 Msa0619060:intron
ATTTCTAACTTCTTGCCAGA+TGG 0.516677 4_2:+70094117 None:intergenic
AGATGCTACCTTCCAGAGCC+TGG 0.516686 4_2:+70094273 None:intergenic
GTAACTTGTATCCATTGTGT+TGG 0.522077 4_2:-70092229 Msa0619060:intron
TTTGGAAGCAATCTTGAATG+AGG 0.522835 4_2:+70092951 None:intergenic
TCTATTACTGGAAGGTGGAT+GGG 0.533432 4_2:-70093814 Msa0619060:intron
GTGTGGAGAGCTTAGTATTG+AGG 0.553989 4_2:-70092974 Msa0619060:CDS
ATACTTCCTAGAATGAATCA+TGG 0.557877 4_2:+70092206 None:intergenic
GTGATTTCTAGCCATCCCTC+TGG 0.559113 4_2:+70092635 None:intergenic
TCGAAACAAACTTCGAATCC+CGG 0.559452 4_2:+70092296 None:intergenic
TGGGGTTGTGTCGAGCGGAA+GGG 0.564105 4_2:+70092256 None:intergenic
GAAGTTTGTTTCGACATAGT+GGG 0.564277 4_2:-70092287 Msa0619060:three_prime_UTR
TACCTGATCAGGAGTGATTG+TGG 0.569292 4_2:+70092810 None:intergenic
TTGGGCATCTTCAATCCAGA+GGG 0.577853 4_2:-70092650 Msa0619060:CDS
ACCAACTCTAGAACTAGAGA+AGG 0.579053 4_2:-70094049 Msa0619060:intron
GAGCTTTACCAGGCTCTGGA+AGG 0.579893 4_2:-70094281 Msa0619060:intron
TGATCAAGTTCAATGCAAAA+GGG 0.581171 4_2:-70093008 Msa0619060:CDS
ATGACAACATGAGAATAGGA+AGG 0.590421 4_2:-70092465 Msa0619060:CDS
ATGAATCATGGCCAACACAA+TGG 0.591223 4_2:+70092218 None:intergenic
TGAAACAGGGTAGAAGGTCA+TGG 0.593465 4_2:+70094565 None:intergenic
GAAGAAAAGAGAGCTTTACC+AGG 0.603570 4_2:-70094291 Msa0619060:CDS
TTAGTTGAAGATGAAGCACT+TGG 0.610602 4_2:-70094317 Msa0619060:CDS
TCAGACTATTGATAAAGCCA+AGG 0.616602 4_2:-70093699 Msa0619060:intron
GTTGGGCATCTTCAATCCAG+AGG 0.618538 4_2:-70092651 Msa0619060:CDS
TGACAACATGAGAATAGGAA+GGG 0.637950 4_2:-70092464 Msa0619060:CDS
CTTTCCGTGAAGGAAACATG+TGG 0.639124 4_2:+70092368 None:intergenic
GCATCTTCAATCCAGAGGGA+TGG 0.641660 4_2:-70092646 Msa0619060:CDS
GATAGGTCTATCGAGACATG+TGG 0.649263 4_2:+70094711 None:intergenic
TGTTTGAAGGAATCAACAGA+GGG 0.669440 4_2:-70094152 Msa0619060:intron
ACTTGAAAGAACAACGTGCG+AGG 0.669525 4_2:-70094596 Msa0619060:five_prime_UTR
AGAATAGGAAGGGATGACAA+AGG 0.678331 4_2:-70092454 Msa0619060:CDS
CTAACATGTACATAGTTCCA+CGG 0.686297 4_2:-70094653 Msa0619060:five_prime_UTR
AAAGGGTTGATATTGTTGTG+TGG 0.686655 4_2:-70092991 Msa0619060:CDS
GTGTTTGAAGGAATCAACAG+AGG 0.697719 4_2:-70094153 Msa0619060:intron
TTCATGGTTCTACAAACCAG+AGG 0.699055 4_2:+70094473 None:intergenic
ATCCATGAAAGATTACTAGG+TGG 0.706915 4_2:+70094425 None:intergenic
AAATACAGAATAATGAAACA+GGG 0.717835 4_2:+70094552 None:intergenic
TTTGAAAATGAAGAGCAAAG+CGG 0.731147 4_2:-70093037 Msa0619060:intron
AACAGGGTAGAAGGTCATGG+TGG 0.741425 4_2:+70094568 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTATGATATTTTGTT+GGG - chr4_2:70094103-70094122 Msa0619060:CDS 10.0%
!!! TATTTGATTTTTTCTAATCA+AGG + chr4_2:70092091-70092110 None:intergenic 15.0%
!! GTTTAAAAAAATTGTGATTT+AGG + chr4_2:70092894-70092913 None:intergenic 15.0%
!! ACAAAATCTACATTAAATTA+TGG + chr4_2:70093450-70093469 None:intergenic 15.0%
!! TATTGAGTTTAATTAAACAT+TGG - chr4_2:70093703-70093722 Msa0619060:CDS 15.0%
!! AAGTTAAATAAGTAGTTATT+TGG + chr4_2:70093899-70093918 None:intergenic 15.0%
!! AGGAAAAATTAATTAAACAT+AGG + chr4_2:70094051-70094070 None:intergenic 15.0%
!!! GAAAAATTATGATATTTTGT+TGG - chr4_2:70094102-70094121 Msa0619060:CDS 15.0%
!!! ATTTTTTCTAATCAAGGTTT+TGG + chr4_2:70092085-70092104 None:intergenic 20.0%
!!! TTTCAAGTTTTCTGATAAAA+GGG + chr4_2:70092163-70092182 None:intergenic 20.0%
!! AAATACAGAATAATGAAACA+GGG + chr4_2:70092222-70092241 None:intergenic 20.0%
!! TATTCTGTATTTGATCTTAA+AGG - chr4_2:70092230-70092249 Msa0619060:intron 20.0%
!!! AAAGAGTAATTTGTTTGAAA+TGG - chr4_2:70092585-70092604 Msa0619060:intron 20.0%
!!! AAGAGTAATTTGTTTGAAAT+GGG - chr4_2:70092586-70092605 Msa0619060:intron 20.0%
!! AAAAATACGAACTTTATGAT+TGG + chr4_2:70093215-70093234 None:intergenic 20.0%
!!! TCAATTGTTTTACAAATTAG+AGG - chr4_2:70093362-70093381 Msa0619060:intron 20.0%
!!! CAATTGTTTTACAAATTAGA+GGG - chr4_2:70093363-70093382 Msa0619060:intron 20.0%
!!! TCTCTATTTTTTTTTCTCTT+GGG - chr4_2:70094678-70094697 Msa0619060:five_prime_UTR 20.0%
!!! CTTTCAAGTTTTCTGATAAA+AGG + chr4_2:70092164-70092183 None:intergenic 25.0%
! CAAATACAGAATAATGAAAC+AGG + chr4_2:70092223-70092242 None:intergenic 25.0%
! TTGAAGTTTCATGATATTCA+TGG + chr4_2:70092317-70092336 None:intergenic 25.0%
! ATCATGAAACTTCAAAGATT+TGG - chr4_2:70092322-70092341 Msa0619060:three_prime_UTR 25.0%
! TTTATCCATGAAAGATTACT+AGG + chr4_2:70092352-70092371 None:intergenic 25.0%
! GCAACTTTAATGATAGTAAT+GGG + chr4_2:70092412-70092431 None:intergenic 25.0%
! TGCAACTTTAATGATAGTAA+TGG + chr4_2:70092413-70092432 None:intergenic 25.0%
! GAAGTTAGAAATTGAAAGTT+TGG - chr4_2:70092665-70092684 Msa0619060:CDS 25.0%
!!! CAATGTTTTTTATGTCTTTG+CGG + chr4_2:70092862-70092881 None:intergenic 25.0%
!! TCATGTTATGTTTCTATTAC+TGG - chr4_2:70092945-70092964 Msa0619060:intron 25.0%
!! TTATAGCACTATCTCTATTT+TGG - chr4_2:70092994-70093013 Msa0619060:CDS 25.0%
!! TATAGCACTATCTCTATTTT+GGG - chr4_2:70092995-70093014 Msa0619060:CDS 25.0%
! TCTCTAAGTCAAAAGAAAAA+GGG + chr4_2:70093138-70093157 None:intergenic 25.0%
! ATCTCTAAGTCAAAAGAAAA+AGG + chr4_2:70093139-70093158 None:intergenic 25.0%
!! AATTATGGACCATATGATTT+TGG + chr4_2:70093435-70093454 None:intergenic 25.0%
! AAAATACTAAGCTTGAAATC+TGG - chr4_2:70093487-70093506 Msa0619060:intron 25.0%
!!! ACTTTCTACGATAGTTTTTT+CGG + chr4_2:70093549-70093568 None:intergenic 25.0%
! AATAGACGAGATTATTATGT+TGG + chr4_2:70093674-70093693 None:intergenic 25.0%
! AAAACCAATCAACGAAAATT+AGG + chr4_2:70094166-70094185 None:intergenic 25.0%
! ATGTGGAAAACAAAAAAGAA+CGG + chr4_2:70094389-70094408 None:intergenic 25.0%
!! AAAGTAATTTTGTCGAAACA+TGG - chr4_2:70094422-70094441 Msa0619060:CDS 25.0%
!!! GTCTCTATTTTTTTTTCTCT+TGG - chr4_2:70094677-70094696 Msa0619060:five_prime_UTR 25.0%
!!! TTCTAATCAAGGTTTTGGAT+AGG + chr4_2:70092080-70092099 None:intergenic 30.0%
!!! AAAAGGGTGTCTCAAAATTT+TGG + chr4_2:70092147-70092166 None:intergenic 30.0%
ACATGAGAATCATTCATTGA+TGG + chr4_2:70092274-70092293 None:intergenic 30.0%
TGGATAAACACTTCAAGATT+TGG - chr4_2:70092364-70092383 Msa0619060:three_prime_UTR 30.0%
CATAAAAAACATTGATGTCG+AGG - chr4_2:70092868-70092887 Msa0619060:intron 30.0%
! GTTATGTTTCTATTACTGGA+AGG - chr4_2:70092949-70092968 Msa0619060:CDS 30.0%
CTAAGAGACTTTATTGCATT+GGG - chr4_2:70093040-70093059 Msa0619060:intron 30.0%
CTAGAAATTAAGAGCAAACA+CGG + chr4_2:70093263-70093282 None:intergenic 30.0%
! GTTTTACAAATTAGAGGGTT+TGG - chr4_2:70093368-70093387 Msa0619060:intron 30.0%
!!! AGTTTTTTCGGTTCTAATTC+TGG + chr4_2:70093537-70093556 None:intergenic 30.0%
TATCGTAGAAAGTGAACTAT+AGG - chr4_2:70093556-70093575 Msa0619060:intron 30.0%
GACTCAAACTTTAACAATGT+AGG + chr4_2:70093591-70093610 None:intergenic 30.0%
TTTGAAAATGAAGAGCAAAG+CGG - chr4_2:70093734-70093753 Msa0619060:CDS 30.0%
TGATCAAGTTCAATGCAAAA+GGG - chr4_2:70093763-70093782 Msa0619060:CDS 30.0%
! AGTAGGAGATTTAACTGTTT+TGG + chr4_2:70093841-70093860 None:intergenic 30.0%
TAAATCTCCTACTCTTTGTT+TGG - chr4_2:70093848-70093867 Msa0619060:intron 30.0%
TTCTACTTCAAATTCACAGA+GGG - chr4_2:70093917-70093936 Msa0619060:intron 30.0%
TCTTTGTAATATACCTGATC+AGG + chr4_2:70093975-70093994 None:intergenic 30.0%
! GTACATTTCCTTTTTGTTCT+TGG - chr4_2:70094000-70094019 Msa0619060:intron 30.0%
! TTGATTAGCCAAGAACAAAA+AGG + chr4_2:70094011-70094030 None:intergenic 30.0%
! GTATCCTAATTTTCGTTGAT+TGG - chr4_2:70094159-70094178 Msa0619060:intron 30.0%
ATACTTCCTAGAATGAATCA+TGG + chr4_2:70094568-70094587 None:intergenic 30.0%
CTAACATGTACATAGTTCCA+CGG - chr4_2:70092118-70092137 Msa0619060:three_prime_UTR 35.0%
GAATAATGAAACAGGGTAGA+AGG + chr4_2:70092215-70092234 None:intergenic 35.0%
ATCCATGAAAGATTACTAGG+TGG + chr4_2:70092349-70092368 None:intergenic 35.0%
!! GTAATGGGTCTAAACCATAA+TGG + chr4_2:70092397-70092416 None:intergenic 35.0%
AAAGTTGCAGAACAATCTTC+TGG - chr4_2:70092424-70092443 Msa0619060:CDS 35.0%
! TTAGTTGAAGATGAAGCACT+TGG - chr4_2:70092454-70092473 Msa0619060:CDS 35.0%
GGGTAAACAAATGTGTTTGA+AGG - chr4_2:70092606-70092625 Msa0619060:intron 35.0%
TGTTTGAAGGAATCAACAGA+GGG - chr4_2:70092619-70092638 Msa0619060:intron 35.0%
ATTTCTAACTTCTTGCCAGA+TGG + chr4_2:70092657-70092676 None:intergenic 35.0%
!! TCAAGGCTTTAAAATCGACA+CGG - chr4_2:70092755-70092774 Msa0619060:intron 35.0%
! ATGTTTCTATTACTGGAAGG+TGG - chr4_2:70092952-70092971 Msa0619060:CDS 35.0%
!!! TCTCTATTTTGGGATCAAGA+AGG - chr4_2:70093005-70093024 Msa0619060:CDS 35.0%
CCAATGCAATAAAGTCTCTT+AGG + chr4_2:70093042-70093061 None:intergenic 35.0%
CCTAAGAGACTTTATTGCAT+TGG - chr4_2:70093039-70093058 Msa0619060:intron 35.0%
TCAGACTATTGATAAAGCCA+AGG - chr4_2:70093072-70093091 Msa0619060:intron 35.0%
!! TATGATTTTGGTCAGACAGA+CGG + chr4_2:70093423-70093442 None:intergenic 35.0%
TCTGTCTGACCAAAATCATA+TGG - chr4_2:70093423-70093442 Msa0619060:intron 35.0%
!! CTGGATTGTTTGATTTTGAC+CGG - chr4_2:70093506-70093525 Msa0619060:intron 35.0%
GTGATCAAGTTCAATGCAAA+AGG - chr4_2:70093762-70093781 Msa0619060:CDS 35.0%
!! AAAGGGTTGATATTGTTGTG+TGG - chr4_2:70093780-70093799 Msa0619060:CDS 35.0%
TTTGGAAGCAATCTTGAATG+AGG + chr4_2:70093823-70093842 None:intergenic 35.0%
AAAGCAACCAAACAAAGAGT+AGG + chr4_2:70093858-70093877 None:intergenic 35.0%
CTTCTACTTCAAATTCACAG+AGG - chr4_2:70093916-70093935 Msa0619060:intron 35.0%
!! GTTGATGACAACATGAGAAT+AGG - chr4_2:70094302-70094321 Msa0619060:CDS 35.0%
ATGACAACATGAGAATAGGA+AGG - chr4_2:70094306-70094325 Msa0619060:CDS 35.0%
TGACAACATGAGAATAGGAA+GGG - chr4_2:70094307-70094326 Msa0619060:CDS 35.0%
CAAAGGCAATATCTTTGTGT+TGG - chr4_2:70094334-70094353 Msa0619060:CDS 35.0%
! TTTTCCACATGTTTCCTTCA+CGG - chr4_2:70094399-70094418 Msa0619060:CDS 35.0%
GACAAAATTACTTTCCGTGA+AGG + chr4_2:70094416-70094435 None:intergenic 35.0%
! AATTTTGTCGAAACATGGTC+AGG - chr4_2:70094427-70094446 Msa0619060:CDS 35.0%
! TTGTAGACACTTTTATCAGC+CGG - chr4_2:70094456-70094475 Msa0619060:CDS 35.0%
! GAAGTTTGTTTCGACATAGT+GGG - chr4_2:70094484-70094503 Msa0619060:CDS 35.0%
ATGGATACAAGTTACCAACT+GGG + chr4_2:70094537-70094556 None:intergenic 35.0%
AATGGATACAAGTTACCAAC+TGG + chr4_2:70094538-70094557 None:intergenic 35.0%
! GTAACTTGTATCCATTGTGT+TGG - chr4_2:70094542-70094561 Msa0619060:five_prime_UTR 35.0%
!! TCTCAAAATTTTGGTGACCG+TGG + chr4_2:70092138-70092157 None:intergenic 40.0%
! TTCATGGTTCTACAAACCAG+AGG + chr4_2:70092301-70092320 None:intergenic 40.0%
GACCACCTAGTAATCTTTCA+TGG - chr4_2:70092344-70092363 Msa0619060:three_prime_UTR 40.0%
!! GATTTGGTGAGAAGCCATTA+TGG - chr4_2:70092380-70092399 Msa0619060:three_prime_UTR 40.0%
GAAGAAAAGAGAGCTTTACC+AGG - chr4_2:70092480-70092499 Msa0619060:intron 40.0%
TTGTGAGCTATTGTTAGCAC+TGG - chr4_2:70092550-70092569 Msa0619060:intron 40.0%
GTGTTTGAAGGAATCAACAG+AGG - chr4_2:70092618-70092637 Msa0619060:intron 40.0%
GGAATCAACAGAGGGATATT+TGG - chr4_2:70092627-70092646 Msa0619060:intron 40.0%
! GGGATATTTGGAATTCCATC+TGG - chr4_2:70092639-70092658 Msa0619060:CDS 40.0%
!! TCTAGTTCTAGAGTTGGTTC+TGG + chr4_2:70092720-70092739 None:intergenic 40.0%
!! ACCAACTCTAGAACTAGAGA+AGG - chr4_2:70092722-70092741 Msa0619060:intron 40.0%
!! ACCTTCTCTAGTTCTAGAGT+TGG + chr4_2:70092726-70092745 None:intergenic 40.0%
GAGAAGGTAACTTCATGTCA+AGG - chr4_2:70092738-70092757 Msa0619060:intron 40.0%
CTCCATAATATCAAGAGTCG+CGG + chr4_2:70092791-70092810 None:intergenic 40.0%
TGGAGAGTTCTCGTTAAATG+TGG - chr4_2:70092806-70092825 Msa0619060:intron 40.0%
! CTCGTTAAATGTGGTTGATG+CGG - chr4_2:70092815-70092834 Msa0619060:CDS 40.0%
TTCTATTACTGGAAGGTGGA+TGG - chr4_2:70092956-70092975 Msa0619060:CDS 40.0%
TCTATTACTGGAAGGTGGAT+GGG - chr4_2:70092957-70092976 Msa0619060:CDS 40.0%
GGATCAAGAAGGACAAAGTT+AGG - chr4_2:70093016-70093035 Msa0619060:CDS 40.0%
AGTGCGTTGTATTTGTACCT+TGG + chr4_2:70093092-70093111 None:intergenic 40.0%
! GGTTCTAATTCTGGATTGTC+CGG + chr4_2:70093528-70093547 None:intergenic 40.0%
! TTGAGTCTTTTAGCACATGC+AGG - chr4_2:70093604-70093623 Msa0619060:intron 40.0%
! TGAGTCTTTTAGCACATGCA+GGG - chr4_2:70093605-70093624 Msa0619060:intron 40.0%
!! CACAGTTGATGAACGTGTTT+CGG - chr4_2:70094080-70094099 Msa0619060:CDS 40.0%
AGAATAGGAAGGGATGACAA+AGG - chr4_2:70094317-70094336 Msa0619060:CDS 40.0%
! TGTAGACACTTTTATCAGCC+GGG - chr4_2:70094457-70094476 Msa0619060:CDS 40.0%
TCGAAACAAACTTCGAATCC+CGG + chr4_2:70094478-70094497 None:intergenic 40.0%
! CGAAGTTTGTTTCGACATAG+TGG - chr4_2:70094483-70094502 Msa0619060:CDS 40.0%
TGGATACAAGTTACCAACTG+GGG + chr4_2:70094536-70094555 None:intergenic 40.0%
ATGAATCATGGCCAACACAA+TGG + chr4_2:70094556-70094575 None:intergenic 40.0%
TGTTGGCCATGATTCATTCT+AGG - chr4_2:70094559-70094578 Msa0619060:five_prime_UTR 40.0%
GATAGGTCTATCGAGACATG+TGG + chr4_2:70092063-70092082 None:intergenic 45.0%
ACTTGAAAGAACAACGTGCG+AGG - chr4_2:70092175-70092194 Msa0619060:three_prime_UTR 45.0%
TGAAACAGGGTAGAAGGTCA+TGG + chr4_2:70092209-70092228 None:intergenic 45.0%
TGATTCTCATGTGAGTCCTC+TGG - chr4_2:70092282-70092301 Msa0619060:three_prime_UTR 45.0%
! GCAGAACAATCTTCTGGCTA+TGG - chr4_2:70092430-70092449 Msa0619060:CDS 45.0%
!! GTTAGCACTGGTTGACAAAG+TGG - chr4_2:70092562-70092581 Msa0619060:intron 45.0%
!! TCTAGAGTTGGTTCTGGAGT+TGG + chr4_2:70092714-70092733 None:intergenic 45.0%
TGCCGCGACTCTTGATATTA+TGG - chr4_2:70092786-70092805 Msa0619060:intron 45.0%
GGTTTAGATGTGGCTAACTG+CGG + chr4_2:70093402-70093421 None:intergenic 45.0%
TCAGACAGACGGTTTAGATG+TGG + chr4_2:70093412-70093431 None:intergenic 45.0%
GTGTGGAGAGCTTAGTATTG+AGG - chr4_2:70093797-70093816 Msa0619060:CDS 45.0%
TTCCACAATCACTCCTGATC+AGG - chr4_2:70093959-70093978 Msa0619060:intron 45.0%
TACCTGATCAGGAGTGATTG+TGG + chr4_2:70093964-70093983 None:intergenic 45.0%
CATCAACTGTGCATGCAAGA+AGG + chr4_2:70094071-70094090 None:intergenic 45.0%
TTGGGCATCTTCAATCCAGA+GGG - chr4_2:70094121-70094140 Msa0619060:CDS 45.0%
CTTTCCGTGAAGGAAACATG+TGG + chr4_2:70094406-70094425 None:intergenic 45.0%
AACAGGGTAGAAGGTCATGG+TGG + chr4_2:70092206-70092225 None:intergenic 50.0%
AAGAGAGCTTTACCAGGCTC+TGG - chr4_2:70092486-70092505 Msa0619060:intron 50.0%
!! GGTTGATGCGGTGTCATAAG+CGG - chr4_2:70092827-70092846 Msa0619060:CDS 50.0%
! GGTGTCATAAGCGGCTGTTA+TGG - chr4_2:70092836-70092855 Msa0619060:CDS 50.0%
GTTGGGCATCTTCAATCCAG+AGG - chr4_2:70094120-70094139 Msa0619060:CDS 50.0%
GCATCTTCAATCCAGAGGGA+TGG - chr4_2:70094125-70094144 Msa0619060:CDS 50.0%
!! GTGATTTCTAGCCATCCCTC+TGG + chr4_2:70094139-70094158 None:intergenic 50.0%
!! GAGCTTTACCAGGCTCTGGA+AGG - chr4_2:70092490-70092509 Msa0619060:intron 55.0%
AGATGCTACCTTCCAGAGCC+TGG + chr4_2:70092501-70092520 None:intergenic 55.0%
ACTGGAAGGTGGATGGGTGT+TGG - chr4_2:70092963-70092982 Msa0619060:CDS 55.0%
!! GGAAGGTGGATGGGTGTTGG+AGG - chr4_2:70092966-70092985 Msa0619060:CDS 60.0%
TGGGGTTGTGTCGAGCGGAA+GGG + chr4_2:70094518-70094537 None:intergenic 60.0%
CCAACTGGGGTTGTGTCGAG+CGG + chr4_2:70094523-70094542 None:intergenic 60.0%
GGGGTTGTGTCGAGCGGAAG+GGG + chr4_2:70094517-70094536 None:intergenic 65.0%
CTGGGGTTGTGTCGAGCGGA+AGG + chr4_2:70094519-70094538 None:intergenic 65.0%
CCGCTCGACACAACCCCAGT+TGG - chr4_2:70094520-70094539 Msa0619060:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70092053 70094740 70092053 ID=Msa0619060;Name=Msa0619060
chr4_2 mRNA 70092053 70094740 70092053 ID=Msa0619060-mRNA-1;Parent=Msa0619060;Name=Msa0619060-mRNA-1;_AED=0.11;_eAED=0.11;_QI=224|1|1|1|0.85|0.75|8|332|259
chr4_2 exon 70092053 70092247 70092053 ID=Msa0619060-mRNA-1:exon:20391;Parent=Msa0619060-mRNA-1
chr4_2 exon 70092271 70092495 70092271 ID=Msa0619060-mRNA-1:exon:20390;Parent=Msa0619060-mRNA-1
chr4_2 exon 70092635 70092708 70092635 ID=Msa0619060-mRNA-1:exon:20389;Parent=Msa0619060-mRNA-1
chr4_2 exon 70092813 70092857 70092813 ID=Msa0619060-mRNA-1:exon:20388;Parent=Msa0619060-mRNA-1
chr4_2 exon 70092948 70093046 70092948 ID=Msa0619060-mRNA-1:exon:20387;Parent=Msa0619060-mRNA-1
chr4_2 exon 70093700 70093822 70093700 ID=Msa0619060-mRNA-1:exon:20386;Parent=Msa0619060-mRNA-1
chr4_2 exon 70094050 70094165 70094050 ID=Msa0619060-mRNA-1:exon:20385;Parent=Msa0619060-mRNA-1
chr4_2 exon 70094282 70094740 70094282 ID=Msa0619060-mRNA-1:exon:20384;Parent=Msa0619060-mRNA-1
chr4_2 five_prime_UTR 70094517 70094740 70094517 ID=Msa0619060-mRNA-1:five_prime_utr;Parent=Msa0619060-mRNA-1
chr4_2 CDS 70094282 70094516 70094282 ID=Msa0619060-mRNA-1:cds;Parent=Msa0619060-mRNA-1
chr4_2 CDS 70094050 70094165 70094050 ID=Msa0619060-mRNA-1:cds;Parent=Msa0619060-mRNA-1
chr4_2 CDS 70093700 70093822 70093700 ID=Msa0619060-mRNA-1:cds;Parent=Msa0619060-mRNA-1
chr4_2 CDS 70092948 70093046 70092948 ID=Msa0619060-mRNA-1:cds;Parent=Msa0619060-mRNA-1
chr4_2 CDS 70092813 70092857 70092813 ID=Msa0619060-mRNA-1:cds;Parent=Msa0619060-mRNA-1
chr4_2 CDS 70092635 70092708 70092635 ID=Msa0619060-mRNA-1:cds;Parent=Msa0619060-mRNA-1
chr4_2 CDS 70092408 70092495 70092408 ID=Msa0619060-mRNA-1:cds;Parent=Msa0619060-mRNA-1
chr4_2 three_prime_UTR 70092271 70092407 70092271 ID=Msa0619060-mRNA-1:three_prime_utr;Parent=Msa0619060-mRNA-1
chr4_2 three_prime_UTR 70092053 70092247 70092053 ID=Msa0619060-mRNA-1:three_prime_utr;Parent=Msa0619060-mRNA-1
Gene Sequence

>Msa0619060

ATGAATGATTCTCATGTGAGTCCTCTGGTTTGTAGAACCATGAATATCATGAAACTTCAAAGATTTGGACCACCTAGTAATCTTTCATGGATAAACACTTCAAGATTTGGTGAGAAGCCATTATGGTTTAGACCCATTACTATCATTAAAGTTGCAGAACAATCTTCTGGCTATGGCTTAGTTGAAGATGAAGCACTTGGACAGAAGAAAAGAGAGCTTTACCAGGCTCTGGAAGGAATCAACAGAGGGATATTTGGAATTCCATCTGGCAAGAAGTTAGAAATTGAAAGTTTGGTGAAGCAGCTAGAATCTCAAAATCCAACTCCAGAACCAACTCTAGAACTAGAGAAGGTGGATGGGTGTTGGAGGCTTGTTTATAGCACTATCTCTATTTTGGGATCAAGAAGGACAAAGTTAGGCCTAAGAGACTTTATTGCATTGGGTGATTTCTTTCAGACTATTGATAAAGCCAAGAGCAAAGCGGTGAACGTGATCAAGTTCAATGCAAAAGGGTTGATATTGTTGTGTGGAGAGCTTAGTATTGAGGCCTCATTCAAGATTGCTTCCAAAACAAGGGTTGACATTAATTTTGAAAATTCCACAATCACTCCTGATCAGTTGATGAACGTGTTTCGGAAAAATTATGATATTTTGTTGGGCATCTTCAATCCAGAGGGATGGCTAGAAATCACATATGTTGATGACAACATGAGAATAGGAAGGGATGACAAAGGCAATATCTTTGTGTTGGAAAGATTTGAAGATAATAGCAACTCGTAG

Protein sequence

>Msa0619060

MNDSHVSPLVCRTMNIMKLQRFGPPSNLSWINTSRFGEKPLWFRPITIIKVAEQSSGYGLVEDEALGQKKRELYQALEGINRGIFGIPSGKKLEIESLVKQLESQNPTPEPTLELEKVDGCWRLVYSTISILGSRRTKLGLRDFIALGDFFQTIDKAKSKAVNVIKFNAKGLILLCGELSIEASFKIASKTRVDINFENSTITPDQLMNVFRKNYDILLGIFNPEGWLEITYVDDNMRIGRDDKGNIFVLERFEDNSNS*