AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0393570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0393570 MtrunA17_Chr3g0078891 69.191 383 90 8 1 372 1 366 7.44e-171 483
Msa0393570 MtrunA17_Chr3g0078731 68.475 387 90 9 1 372 1 370 1.85e-169 478
Msa0393570 MtrunA17_Chr3g0078681 72.152 316 68 8 14 317 18 325 9.07e-145 414
Msa0393570 MtrunA17_Chr8g0364381 62.274 387 117 11 1 372 49 421 3.49e-139 403
Msa0393570 MtrunA17_Chr3g0077781 55.673 379 137 11 5 372 3 361 3.58e-120 353
Msa0393570 MtrunA17_Chr2g0331741 51.064 376 161 9 5 372 65 425 3.23e-103 311
Msa0393570 MtrunA17_Chr3g0078191 50.392 383 167 9 5 379 33 400 7.98e-98 297
Msa0393570 MtrunA17_Chr3g0077791 54.303 337 128 8 6 330 2 324 2.37e-92 280
Msa0393570 MtrunA17_Chr2g0325081 48.485 363 163 10 19 372 13 360 2.29e-86 266
Msa0393570 MtrunA17_Chr3g0085901 44.297 377 159 13 9 372 2 340 2.49e-76 240
Msa0393570 MtrunA17_Chr5g0427711 42.700 363 178 10 19 372 3 344 5.39e-67 216
Msa0393570 MtrunA17_Chr6g0457681 39.130 391 182 12 6 372 41 399 1.76e-63 209
Msa0393570 MtrunA17_Chr3g0085941 41.470 381 187 14 7 376 2 357 3.93e-63 206
Msa0393570 MtrunA17_Chr7g0249591 39.153 378 192 11 7 372 2 353 7.83e-63 207
Msa0393570 MtrunA17_Chr7g0221741 40.106 379 185 13 6 372 2 350 4.56e-62 203
Msa0393570 MtrunA17_Chr3g0132661 37.500 408 188 11 8 372 14 397 2.98e-61 202
Msa0393570 MtrunA17_Chr6g0486911 36.580 421 187 13 5 372 7 400 3.67e-60 200
Msa0393570 MtrunA17_Chr3g0082431 40.426 376 184 12 19 384 10 355 1.49e-59 197
Msa0393570 MtrunA17_Chr4g0070811 47.636 275 122 9 105 372 5 264 2.92e-59 193
Msa0393570 MtrunA17_Chr8g0366411 37.805 410 183 14 6 372 66 446 4.40e-59 198
Msa0393570 MtrunA17_Chr3g0091201 42.900 331 164 10 5 330 13 323 4.50e-59 194
Msa0393570 MtrunA17_Chr3g0085961 36.567 402 195 10 7 372 2 379 9.10e-59 195
Msa0393570 MtrunA17_Chr3g0082451 39.578 379 182 12 19 384 10 354 1.37e-58 194
Msa0393570 MtrunA17_Chr4g0049031 38.481 395 168 15 19 372 28 388 6.30e-58 196
Msa0393570 MtrunA17_Chr7g0221701 41.420 338 160 11 42 372 4 310 7.10e-58 191
Msa0393570 MtrunA17_Chr7g0252201 44.086 279 129 10 19 291 16 273 9.98e-57 187
Msa0393570 MtrunA17_Chr6g0486921 35.682 440 187 18 5 372 3 418 1.37e-55 188
Msa0393570 MtrunA17_Chr5g0424761 38.624 378 195 13 5 372 3 353 2.04e-54 183
Msa0393570 MtrunA17_Chr4g0049111 37.883 359 179 15 5 349 30 358 2.88e-53 184
Msa0393570 MtrunA17_Chr4g0049041 36.124 418 185 17 9 370 14 405 9.45e-53 181
Msa0393570 MtrunA17_Chr5g0419301 34.625 413 190 15 11 372 21 404 2.78e-52 180
Msa0393570 MtrunA17_Chr6g0460081 36.719 384 193 14 7 372 21 372 9.83e-52 177
Msa0393570 MtrunA17_Chr6g0457641 39.557 316 162 9 19 330 51 341 1.93e-51 176
Msa0393570 MtrunA17_Chr4g0005311 36.543 405 186 13 9 369 15 392 1.51e-50 174
Msa0393570 MtrunA17_Chr3g0084261 37.563 394 176 13 19 372 25 388 4.84e-50 173
Msa0393570 MtrunA17_Chr3g0085951 37.688 398 179 14 18 372 1 372 1.26e-49 172
Msa0393570 MtrunA17_Chr4g0048151 32.870 432 205 15 2 379 12 412 1.91e-49 173
Msa0393570 MtrunA17_Chr4g0049121 34.204 421 213 13 3 372 15 422 2.85e-49 174
Msa0393570 MtrunA17_Chr3g0084241 38.281 384 182 13 19 372 7 365 8.39e-49 169
Msa0393570 MtrunA17_Chr6g0457621 34.328 402 178 13 7 372 21 372 8.56e-49 169
Msa0393570 MtrunA17_Chr5g0440681 33.659 410 167 15 8 371 14 364 3.65e-46 162
Msa0393570 MtrunA17_Chr4g0049071 34.000 400 192 14 20 372 50 424 6.04e-46 163
Msa0393570 MtrunA17_Chr6g0460041 39.855 276 138 9 20 291 41 292 1.08e-44 156
Msa0393570 MtrunA17_Chr5g0419311 35.976 328 170 13 11 327 21 319 3.27e-43 153
Msa0393570 MtrunA17_Chr1g0199541 39.051 274 130 10 9 270 13 261 5.80e-43 151
Msa0393570 MtrunA17_Chr5g0424701 38.929 280 142 10 5 279 2 257 6.53e-43 150
Msa0393570 MtrunA17_Chr3g0104731 39.615 260 128 8 19 270 19 257 9.43e-43 150
Msa0393570 MtrunA17_Chr4g0023631 33.894 416 188 18 8 376 7 382 8.81e-42 152
Msa0393570 MtrunA17_Chr3g0099441 32.889 450 173 20 19 372 27 443 1.51e-41 152
Msa0393570 MtrunA17_Chr3g0104721 39.382 259 131 8 19 269 28 268 1.25e-39 143
Msa0393570 MtrunA17_Chr3g0091161 37.243 341 175 12 19 349 14 325 1.33e-39 145
Msa0393570 MtrunA17_Chr2g0331731 48.315 178 77 5 200 372 1 168 4.56e-39 137
Msa0393570 MtrunA17_Chr8g0361351 31.714 391 214 13 5 372 2 362 1.76e-36 136
Msa0393570 MtrunA17_Chr3g0099461 31.325 415 190 16 19 372 27 407 4.87e-36 136
Msa0393570 MtrunA17_Chr8g0362531 30.319 376 228 10 14 372 36 394 1.05e-35 135
Msa0393570 MtrunA17_Chr1g0181881 48.428 159 77 4 11 164 10 168 1.29e-35 128
Msa0393570 MtrunA17_Chr4g0011321 41.228 228 106 7 3 230 15 214 2.71e-33 125
Msa0393570 MtrunA17_Chr1g0170171 36.306 314 147 11 19 330 24 286 8.21e-33 125
Msa0393570 MtrunA17_Chr3g0084251 45.000 220 108 7 19 233 25 236 9.22e-33 129
Msa0393570 MtrunA17_Chr3g0084251 35.224 335 160 13 75 372 252 566 4.11e-29 119
Msa0393570 MtrunA17_Chr4g0011401 32.468 385 211 15 19 379 145 504 1.37e-32 128
Msa0393570 MtrunA17_Chr3g0091211 35.000 280 109 9 19 291 10 223 1.46e-32 122
Msa0393570 MtrunA17_Chr6g0488371 37.445 227 115 6 1 215 1 212 4.90e-32 120
Msa0393570 MtrunA17_Chr6g0488401 31.234 381 219 11 7 369 2 357 1.27e-31 124
Msa0393570 MtrunA17_Chr7g0220351 31.000 400 233 13 4 379 132 512 2.06e-31 125
Msa0393570 MtrunA17_Chr5g0434961 58.120 117 41 4 81 194 1 112 1.73e-30 113
Msa0393570 MtrunA17_Chr4g0049531 32.778 360 158 15 68 372 6 336 3.11e-30 119
Msa0393570 MtrunA17_Chr4g0011331 33.731 335 179 10 3 333 146 441 8.75e-30 119
Msa0393570 MtrunA17_Chr4g0058061 30.303 330 196 10 10 333 145 446 8.86e-30 119
Msa0393570 MtrunA17_Chr6g0452031 30.814 344 190 13 9 327 2 322 1.47e-25 105
Msa0393570 MtrunA17_Chr3g0100081 29.261 352 182 13 20 331 25 349 1.49e-24 103
Msa0393570 MtrunA17_Chr4g0039521 38.009 221 109 7 13 231 9 203 1.77e-24 100
Msa0393570 MtrunA17_Chr6g0460051 47.170 106 50 2 19 119 51 155 6.26e-23 94.0
Msa0393570 MtrunA17_Chr5g0404531 39.109 202 89 10 155 352 19 190 1.14e-22 94.4
Msa0393570 MtrunA17_Chr1g0188701 30.451 266 157 7 19 272 3 252 2.97e-22 95.1
Msa0393570 MtrunA17_Chr3g0087471 44.231 104 55 1 19 119 25 128 3.31e-22 91.7
Msa0393570 MtrunA17_Chr4g0049131 47.115 104 53 1 16 117 3 106 3.59e-22 91.3
Msa0393570 MtrunA17_Chr4g0023731 37.037 135 78 2 1 132 5 135 3.70e-21 90.9
Msa0393570 MtrunA17_Chr3g0099431 37.640 178 84 7 156 330 4 157 1.82e-20 87.4
Msa0393570 MtrunA17_Chr7g0269551 41.912 136 55 7 159 294 1 112 4.09e-19 82.8
Msa0393570 MtrunA17_Chr8g0342451 27.165 254 147 7 19 235 35 287 6.69e-19 87.8
Msa0393570 MtrunA17_Chr2g0330161 28.464 267 151 8 7 234 22 287 9.59e-19 87.4
Msa0393570 MtrunA17_Chr3g0139601 33.880 183 105 3 10 187 3 174 5.64e-18 85.5
Msa0393570 MtrunA17_Chr8g0361241 36.047 172 95 5 20 177 12 182 5.78e-18 83.6
Msa0393570 MtrunA17_Chr3g0085981 31.392 309 143 11 105 372 5 285 1.31e-17 82.4
Msa0393570 MtrunA17_Chr4g0049061 42.056 107 55 2 3 109 21 120 1.58e-16 76.3
Msa0393570 MtrunA17_Chr3g0136291 32.203 177 99 6 16 183 10 174 3.96e-15 75.9
Msa0393570 MtrunA17_Chr7g0226481 33.149 181 102 4 16 188 7 176 7.89e-15 75.1
Msa0393570 MtrunA17_Chr4g0049051 34.965 143 73 6 185 327 3 125 7.97e-15 71.2
Msa0393570 MtrunA17_Chr3g0084231 40.171 117 63 1 4 113 9 125 1.08e-14 74.7
Msa0393570 MtrunA17_Chr3g0091171 30.682 176 106 3 20 187 5 172 6.24e-14 72.4
Msa0393570 MtrunA17_Chr4g0049091 30.370 270 141 13 101 351 12 253 1.13e-13 72.0
Msa0393570 MtrunA17_Chr7g0255101 35.971 139 83 2 19 151 109 247 3.35e-13 70.9
Msa0393570 MtrunA17_Chr3g0093361 28.342 187 118 3 9 187 32 210 4.36e-13 70.1
Msa0393570 MtrunA17_Chr5g0404351 39.831 118 64 5 35 146 7 123 6.98e-13 65.1
Msa0393570 MtrunA17_Chr3g0086041 32.164 171 104 5 20 181 26 193 1.18e-12 68.9
Msa0393570 MtrunA17_Chr7g0246351 30.000 190 103 5 19 183 5 189 1.88e-12 68.2
Msa0393570 MtrunA17_Chr7g0236101 34.286 140 88 2 16 151 5 144 2.84e-12 64.7
Msa0393570 MtrunA17_Chr2g0278121 32.275 189 96 8 20 183 16 197 2.87e-12 67.8
Msa0393570 MtrunA17_Chr1g0166251 31.111 180 99 6 12 181 4 168 6.81e-12 66.6
Msa0393570 MtrunA17_Chr7g0236211 30.159 189 112 5 8 187 2 179 9.54e-12 65.9
Msa0393570 MtrunA17_Chr3g0086141 32.394 142 83 3 18 146 1 142 1.37e-11 63.5
Msa0393570 MtrunA17_Chr4g0023311 25.059 423 231 17 20 388 32 422 1.80e-11 65.5
Msa0393570 MtrunA17_Chr2g0278131 48.485 66 34 0 20 85 14 79 2.14e-11 59.7
Msa0393570 MtrunA17_Chr1g0164901 24.607 382 241 16 20 384 9 360 2.22e-11 64.7
Msa0393570 MtrunA17_Chr7g0236151 34.043 141 89 2 15 151 4 144 2.68e-11 64.3
Msa0393570 MtrunA17_Chr7g0236191 34.043 141 89 2 15 151 4 144 2.68e-11 64.3
Msa0393570 MtrunA17_Chr7g0236171 30.769 182 100 4 19 193 8 170 8.75e-11 60.5
Msa0393570 MtrunA17_Chr7g0236131 30.769 182 100 4 19 193 8 170 8.75e-11 60.5
Msa0393570 MtrunA17_Chr7g0236081 30.769 182 100 4 19 193 8 170 8.75e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0393570 AT4G13960.2 25.954 393 217 15 20 379 2 353 2.64e-14 74.7
Msa0393570 AT4G13960.1 25.954 393 217 15 20 379 2 353 2.64e-14 74.7
Msa0393570 AT3G28410.1 24.745 392 234 14 7 382 15 361 2.35e-13 71.6
Msa0393570 AT4G03220.1 29.730 296 175 13 20 302 24 299 1.53e-12 69.3
Msa0393570 AT5G44490.1 22.691 379 240 14 19 376 16 362 1.76e-12 68.9
Msa0393570 AT5G44950.1 32.051 156 90 5 19 162 3 154 1.97e-12 68.9
Msa0393570 AT5G44490.2 22.955 379 239 14 19 376 16 362 2.24e-12 68.6
Msa0393570 AT1G52650.1 24.938 405 223 19 20 386 2 363 3.05e-12 68.2
Msa0393570 AT5G22610.2 24.416 385 264 14 9 381 7 376 3.14e-12 68.2
Msa0393570 AT5G44980.2 25.130 386 222 18 19 377 3 348 7.62e-12 67.0
Msa0393570 AT5G44980.1 25.130 386 222 18 19 377 3 348 7.62e-12 67.0
Msa0393570 AT1G69630.1 26.700 397 226 19 1 372 1 357 1.62e-11 65.9
Msa0393570 AT1G16930.2 28.488 172 103 4 20 183 15 174 2.19e-11 65.5
Msa0393570 AT1G16930.1 28.488 172 103 4 20 183 15 174 2.19e-11 65.5
Msa0393570 AT1G16930.3 28.488 172 103 4 20 183 15 174 2.19e-11 65.5
Msa0393570 AT5G44940.1 29.677 155 95 4 20 162 5 157 3.34e-11 64.7
Msa0393570 AT4G15060.2 26.329 395 239 18 2 377 1 362 3.48e-11 64.7
Msa0393570 AT5G02700.1 23.925 372 226 12 8 354 15 354 3.52e-11 65.1
Msa0393570 AT5G56420.1 29.148 223 138 7 16 231 2 211 3.94e-11 64.7
Msa0393570 AT5G56420.2 29.148 223 138 7 16 231 2 211 3.94e-11 64.7
Msa0393570 AT5G56420.3 29.148 223 138 7 16 231 2 211 3.94e-11 64.7
Msa0393570 AT5G22660.2 26.667 345 208 12 19 346 12 328 5.58e-11 64.3
Msa0393570 AT5G18780.3 33.939 165 94 7 19 172 10 170 5.97e-11 63.9
Msa0393570 AT5G18780.4 33.939 165 94 7 19 172 10 170 5.97e-11 63.9
Msa0393570 AT5G18780.2 33.939 165 94 7 19 172 10 170 9.43e-11 63.5
Msa0393570 AT5G18780.1 33.939 165 94 7 19 172 10 170 9.43e-11 63.5

Find 81 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGATTCTGTCCTGAATT+TGG 0.118812 3_2:+7662404 Msa0393560:intron
ATGGGTACCTACCAAAATTT+TGG 0.144587 3_2:-7661288 Msa0393570:CDS
AAGCGTATTCAATAATATTT+TGG 0.164811 3_2:+7662134 Msa0393560:intron
AAGCAATAAGTCCAAAATTT+TGG 0.202536 3_2:+7661277 Msa0393560:intron
CATATGTATCGTTGTTTCTA+TGG 0.225816 3_2:-7661761 Msa0393570:CDS
AATTATATTCCAAAACTCTT+TGG 0.231100 3_2:-7661641 Msa0393570:CDS
CCAGAGATTGATCCATCTTT+TGG 0.247931 3_2:+7662306 Msa0393560:intron
GTCTTGCTCCCAAAGAGTTT+TGG 0.282395 3_2:+7661632 Msa0393560:intron
TTAACGTCTCTCAGTCTTAC+TGG 0.315677 3_2:-7662031 Msa0393570:CDS
ATTATATTCCAAAACTCTTT+GGG 0.317653 3_2:-7661640 Msa0393570:CDS
ATTTGAATAGATTAACCATT+TGG 0.320494 3_2:+7661546 Msa0393560:intron
CATTGACCGCTGTGCACTTA+GGG 0.330225 3_2:-7661837 Msa0393570:CDS
GCGGATTTCAAAATCGATTT+CGG 0.332936 3_2:-7661713 Msa0393570:CDS
TGCCTCTTTAGCGTTCAAAA+AGG 0.343862 3_2:+7662348 Msa0393560:intron
TAGAGTTAAATTGACAAGTT+TGG 0.350392 3_2:+7661784 Msa0393560:intron
CAACATGTTAAATGTGGAAA+AGG 0.367426 3_2:+7661871 Msa0393560:intron
TTTACACTATTACATGTGTT+TGG 0.372577 3_2:-7661576 Msa0393570:CDS
TTTGAATAGATTAACCATTT+GGG 0.383796 3_2:+7661547 Msa0393560:intron
GATGTTGGGTTGCAGACTAT+TGG 0.388699 3_2:-7660511 Msa0393570:CDS
TCATTGACCGCTGTGCACTT+AGG 0.394674 3_2:-7661838 Msa0393570:CDS
TAGGGACGACATCCAAATTC+AGG 0.409313 3_2:-7662416 Msa0393570:CDS
AACATGTTAAATGTGGAAAA+GGG 0.410583 3_2:+7661872 Msa0393560:intron
ATAGGAACTGTTCAAAACTT+TGG 0.421474 3_2:+7662236 Msa0393560:intron
TAGAAGCGCTCCGACCTTCA+TGG 0.421609 3_2:-7661307 Msa0393570:CDS
GAAGAGACAACAACATAGAT+AGG 0.428745 3_2:+7662218 Msa0393560:intron
ACCATCATCGTTACAACAAA+AGG 0.431285 3_2:+7661907 Msa0393560:intron
GGTATCAATCTAATGCTTCC+CGG 0.434879 3_2:-7662010 Msa0393570:CDS
CCAAAAGATGGATCAATCTC+TGG 0.439047 3_2:-7662306 Msa0393570:CDS
AGTGAGAGATGAAAAGAAAC+AGG 0.443915 3_2:+7662054 Msa0393560:intron
ATTGGTGATTACAGGATGTT+GGG 0.451283 3_2:-7660525 Msa0393570:intron
AGAGAGAGAGTGGTTAATGC+TGG 0.454587 3_2:+7661941 Msa0393560:intron
TCGGAGCGCTTCTATATTCA+AGG 0.455494 3_2:+7661316 Msa0393560:intron
TGGAAATATTTGATGATCAC+CGG 0.471331 3_2:+7661991 Msa0393560:intron
GAGAGAGAGTGGTTAATGCT+GGG 0.474650 3_2:+7661942 Msa0393560:intron
GTGTTTGGAGAGGGCCCAAA+TGG 0.478330 3_2:-7661561 Msa0393570:CDS
CATTGGTGATTACAGGATGT+TGG 0.488796 3_2:-7660526 Msa0393570:intron
TTTGAAATCCGCTTTGGTTG+TGG 0.489166 3_2:+7661724 Msa0393560:intron
AAGGTGCTTTAGAGAGAGAG+TGG 0.489289 3_2:+7661931 Msa0393560:intron
GAAGATTAATATGAGTGTAA+TGG 0.491266 3_2:+7662083 Msa0393560:intron
ATCAACACTTAACGTAAGAG+TGG 0.497516 3_2:+7662273 Msa0393560:intron
CTTCGAGCAAAGCAAGAGAA+TGG 0.500650 3_2:+7662176 Msa0393560:intron
AAAACAAAGGAATGAAGTGT+TGG 0.515841 3_2:+7661674 Msa0393560:intron
TGAATTTGGATGTCGTCCCT+AGG 0.522461 3_2:+7662418 Msa0393560:intron
TCAAAACTCACCCTCGGCAA+AGG 0.527468 3_2:-7661255 Msa0393570:intron
AGAAGCGCTCCGACCTTCAT+GGG 0.538766 3_2:-7661306 Msa0393570:CDS
CAAAGCAAGAGAATGGATAT+CGG 0.540857 3_2:+7662183 Msa0393560:intron
GGCAAAGTAAGAGGCAACCT+AGG 0.543603 3_2:-7662435 Msa0393570:CDS
GACTTCAAGTTACAGAAGGA+AGG 0.544715 3_2:+7661338 Msa0393560:intron
AGGGAGCTCACGATGAATGC+GGG 0.547402 3_2:+7661358 Msa0393560:intron
ATGTTTGATAGAAGAGAAAA+CGG 0.551098 3_2:+7661610 Msa0393560:intron
CTATTACATGTGTTTGGAGA+GGG 0.554705 3_2:-7661570 Msa0393570:CDS
AGTATTCAACATGTTAAATG+TGG 0.563064 3_2:+7661865 Msa0393560:intron
CAAGGACTTCAAGTTACAGA+AGG 0.571526 3_2:+7661334 Msa0393560:intron
TCCGCTTTGGTTGTGGTGGT+AGG 0.575913 3_2:+7661731 Msa0393560:intron
ACTTCAAGTTACAGAAGGAA+GGG 0.579700 3_2:+7661339 Msa0393560:intron
ATTGACCGCTGTGCACTTAG+GGG 0.580564 3_2:-7661836 Msa0393570:CDS
TGTAATGGATATGAAAGTGT+TGG 0.583714 3_2:+7662098 Msa0393560:intron
AGACACGAAGGCAAAGTAAG+AGG 0.586038 3_2:-7662444 Msa0393570:CDS
GAACTGTTCAAAACTTTGGT+CGG 0.593613 3_2:+7662240 Msa0393560:intron
GGAAATATTTGATGATCACC+GGG 0.596991 3_2:+7661992 Msa0393560:intron
ATTGCTTCAAAACTCACCCT+CGG 0.602621 3_2:-7661261 Msa0393570:CDS
ACATGTTAAATGTGGAAAAG+GGG 0.602816 3_2:+7661873 Msa0393560:intron
CGTCACTTATTATGTTCTCA+CGG 0.609200 3_2:-7661489 Msa0393570:intron
GTTTGGTGCATGAAATGCGA+AGG 0.609741 3_2:+7661801 Msa0393560:intron
CATCGTTACAACAAAAGGAA+AGG 0.614509 3_2:+7661912 Msa0393560:intron
ACTATTACATGTGTTTGGAG+AGG 0.623047 3_2:-7661571 Msa0393570:CDS
AAAGACTGAGAATGAGAACA+TGG 0.625086 3_2:+7661971 Msa0393560:intron
AAGGGAGCTCACGATGAATG+CGG 0.625088 3_2:+7661357 Msa0393560:intron
TCAACACTTAACGTAAGAGT+GGG 0.634119 3_2:+7662274 Msa0393560:intron
TGGTAGGTACCCATGAAGGT+CGG 0.638099 3_2:+7661297 Msa0393560:intron
GCAAAGTAAGAGGCAACCTA+GGG 0.639759 3_2:-7662434 Msa0393570:CDS
TCCTACCACCACAACCAAAG+CGG 0.643133 3_2:-7661732 Msa0393570:CDS
GAAATCCGCTTTGGTTGTGG+TGG 0.644924 3_2:+7661727 Msa0393560:intron
GATGATGTGAACCTTTGCCG+AGG 0.661060 3_2:+7661244 Msa0393560:intron
AGAGATGAAAAGAAACAGGA+CGG 0.661710 3_2:+7662058 Msa0393560:intron
TATGTGATGGAGAAGACAGT+CGG 0.663764 3_2:+7662375 Msa0393560:intron
CGTGAGAACATAATAAGTGA+CGG 0.670950 3_2:+7661490 Msa0393560:intron
ATTAGCACCAGAGAAAACAA+AGG 0.673072 3_2:+7661661 Msa0393560:intron
ATGATGTGAACCTTTGCCGA+GGG 0.688283 3_2:+7661245 Msa0393560:intron
CAACAATGGTGGAGACACGA+AGG 0.714252 3_2:-7662456 None:intergenic
CATTACCCCTAAGTGCACAG+CGG 0.805666 3_2:+7661831 Msa0393560:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAATTTTAAATTTTATCA+AGG - chr3_2:7661505-7661524 Msa0393570:CDS 10.0%
!!! TGTAATTTTAAATTTTATCA+AGG - chr3_2:7661505-7661524 Msa0393570:CDS 10.0%
!! TTGTATTACTATTACATATT+GGG + chr3_2:7661958-7661977 Msa0393560:intron 15.0%
!! ATTGTATTACTATTACATAT+TGG + chr3_2:7661959-7661978 Msa0393560:intron 15.0%
!! TTGTATTACTATTACATATT+GGG + chr3_2:7661958-7661977 Msa0393560:intron 15.0%
!! ATTGTATTACTATTACATAT+TGG + chr3_2:7661959-7661978 Msa0393560:intron 15.0%
!!! AAGCGTATTCAATAATATTT+TGG + chr3_2:7660803-7660822 Msa0393560:intron 20.0%
!! AATTATATTCCAAAACTCTT+TGG - chr3_2:7661293-7661312 Msa0393570:CDS 20.0%
!! ATTATATTCCAAAACTCTTT+GGG - chr3_2:7661294-7661313 Msa0393570:CDS 20.0%
!! TTTGAATAGATTAACCATTT+GGG + chr3_2:7661390-7661409 Msa0393560:intron 20.0%
!! ATTTGAATAGATTAACCATT+TGG + chr3_2:7661391-7661410 Msa0393560:intron 20.0%
!! GAGAGCAATTATTTATTAAA+AGG + chr3_2:7661987-7662006 Msa0393560:intron 20.0%
!!! TAAAATAATCAGGTAGATTT+TGG + chr3_2:7662138-7662157 Msa0393560:intron 20.0%
!!! AAGCGTATTCAATAATATTT+TGG + chr3_2:7660803-7660822 Msa0393560:intron 20.0%
!! AATTATATTCCAAAACTCTT+TGG - chr3_2:7661293-7661312 Msa0393570:CDS 20.0%
!! ATTATATTCCAAAACTCTTT+GGG - chr3_2:7661294-7661313 Msa0393570:CDS 20.0%
!! TTTGAATAGATTAACCATTT+GGG + chr3_2:7661390-7661409 Msa0393560:intron 20.0%
!! ATTTGAATAGATTAACCATT+TGG + chr3_2:7661391-7661410 Msa0393560:intron 20.0%
!! GAGAGCAATTATTTATTAAA+AGG + chr3_2:7661987-7662006 Msa0393560:intron 20.0%
!!! TAAAATAATCAGGTAGATTT+TGG + chr3_2:7662138-7662157 Msa0393560:intron 20.0%
! GAAGATTAATATGAGTGTAA+TGG + chr3_2:7660854-7660873 Msa0393560:intron 25.0%
! AACATGTTAAATGTGGAAAA+GGG + chr3_2:7661065-7661084 Msa0393560:intron 25.0%
! AGTATTCAACATGTTAAATG+TGG + chr3_2:7661072-7661091 Msa0393560:intron 25.0%
! TAGAGTTAAATTGACAAGTT+TGG + chr3_2:7661153-7661172 Msa0393560:intron 25.0%
! ATGTTTGATAGAAGAGAAAA+CGG + chr3_2:7661327-7661346 Msa0393560:intron 25.0%
! TTTACACTATTACATGTGTT+TGG - chr3_2:7661358-7661377 Msa0393570:CDS 25.0%
! TATAAAATGCAGCATTAATG+TGG + chr3_2:7661484-7661503 Msa0393560:intron 25.0%
!!! AATAAGTCCAAAATTTTGGT+AGG + chr3_2:7661656-7661675 Msa0393560:intron 25.0%
!! AAGCAATAAGTCCAAAATTT+TGG + chr3_2:7661660-7661679 Msa0393560:intron 25.0%
! TTATTAAAGGTAGATTGTCT+TGG - chr3_2:7661725-7661744 Msa0393570:CDS 25.0%
! TAGCTTGATTGAATTAACTT+AGG - chr3_2:7661839-7661858 Msa0393570:CDS 25.0%
! AGATCTAGACCTTATATTAT+TGG - chr3_2:7662184-7662203 Msa0393570:CDS 25.0%
! ACAACATCTCCAATAATATA+AGG + chr3_2:7662196-7662215 Msa0393560:intron 25.0%
! TTATCGATGAATTATTTGTC+TGG - chr3_2:7662244-7662263 Msa0393570:CDS 25.0%
! GAAGATTAATATGAGTGTAA+TGG + chr3_2:7660854-7660873 Msa0393560:intron 25.0%
! AACATGTTAAATGTGGAAAA+GGG + chr3_2:7661065-7661084 Msa0393560:intron 25.0%
! AGTATTCAACATGTTAAATG+TGG + chr3_2:7661072-7661091 Msa0393560:intron 25.0%
! TAGAGTTAAATTGACAAGTT+TGG + chr3_2:7661153-7661172 Msa0393560:intron 25.0%
! ATGTTTGATAGAAGAGAAAA+CGG + chr3_2:7661327-7661346 Msa0393560:intron 25.0%
! TTTACACTATTACATGTGTT+TGG - chr3_2:7661358-7661377 Msa0393570:CDS 25.0%
! TATAAAATGCAGCATTAATG+TGG + chr3_2:7661484-7661503 Msa0393560:intron 25.0%
!!! AATAAGTCCAAAATTTTGGT+AGG + chr3_2:7661656-7661675 Msa0393560:intron 25.0%
!! AAGCAATAAGTCCAAAATTT+TGG + chr3_2:7661660-7661679 Msa0393560:intron 25.0%
! TTATTAAAGGTAGATTGTCT+TGG - chr3_2:7661725-7661744 Msa0393570:CDS 25.0%
! TAGCTTGATTGAATTAACTT+AGG - chr3_2:7661839-7661858 Msa0393570:CDS 25.0%
! AGATCTAGACCTTATATTAT+TGG - chr3_2:7662184-7662203 Msa0393570:CDS 25.0%
! ACAACATCTCCAATAATATA+AGG + chr3_2:7662196-7662215 Msa0393560:intron 25.0%
! TTATCGATGAATTATTTGTC+TGG - chr3_2:7662244-7662263 Msa0393570:CDS 25.0%
! CTTGCATTTTATCCAAAAGA+TGG - chr3_2:7660616-7660635 Msa0393570:intron 30.0%
ATAGGAACTGTTCAAAACTT+TGG + chr3_2:7660701-7660720 Msa0393560:intron 30.0%
!! TGTAATGGATATGAAAGTGT+TGG + chr3_2:7660839-7660858 Msa0393560:intron 30.0%
! TGGAAATATTTGATGATCAC+CGG + chr3_2:7660946-7660965 Msa0393560:intron 30.0%
ACATGTTAAATGTGGAAAAG+GGG + chr3_2:7661064-7661083 Msa0393560:intron 30.0%
CAACATGTTAAATGTGGAAA+AGG + chr3_2:7661066-7661085 Msa0393560:intron 30.0%
!! CATATGTATCGTTGTTTCTA+TGG - chr3_2:7661173-7661192 Msa0393570:intron 30.0%
AAAACAAAGGAATGAAGTGT+TGG + chr3_2:7661263-7661282 Msa0393560:intron 30.0%
CGAGAAGTGAAACTTATTAA+AGG - chr3_2:7661712-7661731 Msa0393570:CDS 30.0%
!! TGATTTATCTTGACTTGTGT+TGG - chr3_2:7662018-7662037 Msa0393570:CDS 30.0%
! CTTGCATTTTATCCAAAAGA+TGG - chr3_2:7660616-7660635 Msa0393570:intron 30.0%
ATAGGAACTGTTCAAAACTT+TGG + chr3_2:7660701-7660720 Msa0393560:intron 30.0%
!! TGTAATGGATATGAAAGTGT+TGG + chr3_2:7660839-7660858 Msa0393560:intron 30.0%
! TGGAAATATTTGATGATCAC+CGG + chr3_2:7660946-7660965 Msa0393560:intron 30.0%
ACATGTTAAATGTGGAAAAG+GGG + chr3_2:7661064-7661083 Msa0393560:intron 30.0%
CAACATGTTAAATGTGGAAA+AGG + chr3_2:7661066-7661085 Msa0393560:intron 30.0%
!! CATATGTATCGTTGTTTCTA+TGG - chr3_2:7661173-7661192 Msa0393570:intron 30.0%
AAAACAAAGGAATGAAGTGT+TGG + chr3_2:7661263-7661282 Msa0393560:intron 30.0%
CGAGAAGTGAAACTTATTAA+AGG - chr3_2:7661712-7661731 Msa0393570:CDS 30.0%
!! TGATTTATCTTGACTTGTGT+TGG - chr3_2:7662018-7662037 Msa0393570:CDS 30.0%
! TCAAAAAGGAGAGTATGTGA+TGG + chr3_2:7660575-7660594 Msa0393560:intron 35.0%
TCAACACTTAACGTAAGAGT+GGG + chr3_2:7660663-7660682 Msa0393560:intron 35.0%
ATCAACACTTAACGTAAGAG+TGG + chr3_2:7660664-7660683 Msa0393560:intron 35.0%
GAACTGTTCAAAACTTTGGT+CGG + chr3_2:7660697-7660716 Msa0393560:intron 35.0%
GAAGAGACAACAACATAGAT+AGG + chr3_2:7660719-7660738 Msa0393560:intron 35.0%
CAAAGCAAGAGAATGGATAT+CGG + chr3_2:7660754-7660773 Msa0393560:intron 35.0%
AGAGATGAAAAGAAACAGGA+CGG + chr3_2:7660879-7660898 Msa0393560:intron 35.0%
AGTGAGAGATGAAAAGAAAC+AGG + chr3_2:7660883-7660902 Msa0393560:intron 35.0%
! GGAAATATTTGATGATCACC+GGG + chr3_2:7660945-7660964 Msa0393560:intron 35.0%
AAAGACTGAGAATGAGAACA+TGG + chr3_2:7660966-7660985 Msa0393560:intron 35.0%
CATCGTTACAACAAAAGGAA+AGG + chr3_2:7661025-7661044 Msa0393560:intron 35.0%
!! TCCTTTTGTTGTAACGATGA+TGG - chr3_2:7661026-7661045 Msa0393570:intron 35.0%
ACCATCATCGTTACAACAAA+AGG + chr3_2:7661030-7661049 Msa0393560:intron 35.0%
!!! ATCGATTTTGAAATCCGCTT+TGG + chr3_2:7661219-7661238 Msa0393560:intron 35.0%
! GCGGATTTCAAAATCGATTT+CGG - chr3_2:7661221-7661240 Msa0393570:intron 35.0%
!!! CTTCATTCCTTTGTTTTCTC+TGG - chr3_2:7661266-7661285 Msa0393570:CDS 35.0%
ATTAGCACCAGAGAAAACAA+AGG + chr3_2:7661276-7661295 Msa0393560:intron 35.0%
ACTATTACATGTGTTTGGAG+AGG - chr3_2:7661363-7661382 Msa0393570:CDS 35.0%
CTATTACATGTGTTTGGAGA+GGG - chr3_2:7661364-7661383 Msa0393570:CDS 35.0%
CGTGAGAACATAATAAGTGA+CGG + chr3_2:7661447-7661466 Msa0393560:intron 35.0%
CGTCACTTATTATGTTCTCA+CGG - chr3_2:7661445-7661464 Msa0393570:intron 35.0%
!! CTAAGCAATGAGGAAGTATT+AGG + chr3_2:7661549-7661568 Msa0393560:intron 35.0%
CTAATACTTCCTCATTGCTT+AGG - chr3_2:7661547-7661566 Msa0393570:CDS 35.0%
! ACTTCAAGTTACAGAAGGAA+GGG + chr3_2:7661598-7661617 Msa0393560:intron 35.0%
! ATGGGTACCTACCAAAATTT+TGG - chr3_2:7661646-7661665 Msa0393570:CDS 35.0%
CATTCATGGAAAACAGAGAA+GGG + chr3_2:7661773-7661792 Msa0393560:intron 35.0%
ACATTCATGGAAAACAGAGA+AGG + chr3_2:7661774-7661793 Msa0393560:intron 35.0%
AACAAACACACACACATTCA+TGG + chr3_2:7661787-7661806 Msa0393560:intron 35.0%
!!! ACCTGATTATTTTAGCAGCT+TGG - chr3_2:7662144-7662163 Msa0393570:CDS 35.0%
ACCAAGCTGCTAAAATAATC+AGG + chr3_2:7662148-7662167 Msa0393560:intron 35.0%
TTATTGGAGATGTTGTCTGA+AGG - chr3_2:7662200-7662219 Msa0393570:CDS 35.0%
CACACAGTTAAGTTAAGTTC+AGG + chr3_2:7662346-7662365 Msa0393560:intron 35.0%
! ATTGGTGATTACAGGATGTT+GGG - chr3_2:7662409-7662428 Msa0393570:CDS 35.0%
! TCAAAAAGGAGAGTATGTGA+TGG + chr3_2:7660575-7660594 Msa0393560:intron 35.0%
TCAACACTTAACGTAAGAGT+GGG + chr3_2:7660663-7660682 Msa0393560:intron 35.0%
ATCAACACTTAACGTAAGAG+TGG + chr3_2:7660664-7660683 Msa0393560:intron 35.0%
GAACTGTTCAAAACTTTGGT+CGG + chr3_2:7660697-7660716 Msa0393560:intron 35.0%
GAAGAGACAACAACATAGAT+AGG + chr3_2:7660719-7660738 Msa0393560:intron 35.0%
CAAAGCAAGAGAATGGATAT+CGG + chr3_2:7660754-7660773 Msa0393560:intron 35.0%
AGAGATGAAAAGAAACAGGA+CGG + chr3_2:7660879-7660898 Msa0393560:intron 35.0%
AGTGAGAGATGAAAAGAAAC+AGG + chr3_2:7660883-7660902 Msa0393560:intron 35.0%
! GGAAATATTTGATGATCACC+GGG + chr3_2:7660945-7660964 Msa0393560:intron 35.0%
AAAGACTGAGAATGAGAACA+TGG + chr3_2:7660966-7660985 Msa0393560:intron 35.0%
CATCGTTACAACAAAAGGAA+AGG + chr3_2:7661025-7661044 Msa0393560:intron 35.0%
!! TCCTTTTGTTGTAACGATGA+TGG - chr3_2:7661026-7661045 Msa0393570:intron 35.0%
ACCATCATCGTTACAACAAA+AGG + chr3_2:7661030-7661049 Msa0393560:intron 35.0%
!!! ATCGATTTTGAAATCCGCTT+TGG + chr3_2:7661219-7661238 Msa0393560:intron 35.0%
! GCGGATTTCAAAATCGATTT+CGG - chr3_2:7661221-7661240 Msa0393570:intron 35.0%
!!! CTTCATTCCTTTGTTTTCTC+TGG - chr3_2:7661266-7661285 Msa0393570:CDS 35.0%
ATTAGCACCAGAGAAAACAA+AGG + chr3_2:7661276-7661295 Msa0393560:intron 35.0%
ACTATTACATGTGTTTGGAG+AGG - chr3_2:7661363-7661382 Msa0393570:CDS 35.0%
CTATTACATGTGTTTGGAGA+GGG - chr3_2:7661364-7661383 Msa0393570:CDS 35.0%
CGTGAGAACATAATAAGTGA+CGG + chr3_2:7661447-7661466 Msa0393560:intron 35.0%
CGTCACTTATTATGTTCTCA+CGG - chr3_2:7661445-7661464 Msa0393570:intron 35.0%
!! CTAAGCAATGAGGAAGTATT+AGG + chr3_2:7661549-7661568 Msa0393560:intron 35.0%
CTAATACTTCCTCATTGCTT+AGG - chr3_2:7661547-7661566 Msa0393570:CDS 35.0%
! ACTTCAAGTTACAGAAGGAA+GGG + chr3_2:7661598-7661617 Msa0393560:intron 35.0%
! ATGGGTACCTACCAAAATTT+TGG - chr3_2:7661646-7661665 Msa0393570:CDS 35.0%
CATTCATGGAAAACAGAGAA+GGG + chr3_2:7661773-7661792 Msa0393560:intron 35.0%
ACATTCATGGAAAACAGAGA+AGG + chr3_2:7661774-7661793 Msa0393560:intron 35.0%
AACAAACACACACACATTCA+TGG + chr3_2:7661787-7661806 Msa0393560:intron 35.0%
!!! ACCTGATTATTTTAGCAGCT+TGG - chr3_2:7662144-7662163 Msa0393570:CDS 35.0%
ACCAAGCTGCTAAAATAATC+AGG + chr3_2:7662148-7662167 Msa0393560:intron 35.0%
TTATTGGAGATGTTGTCTGA+AGG - chr3_2:7662200-7662219 Msa0393570:CDS 35.0%
CACACAGTTAAGTTAAGTTC+AGG + chr3_2:7662346-7662365 Msa0393560:intron 35.0%
! ATTGGTGATTACAGGATGTT+GGG - chr3_2:7662409-7662428 Msa0393570:CDS 35.0%
!! CACTGATTCTGTCCTGAATT+TGG + chr3_2:7660533-7660552 Msa0393560:intron 40.0%
! TATGTGATGGAGAAGACAGT+CGG + chr3_2:7660562-7660581 Msa0393560:intron 40.0%
! CTCCTTTTTGAACGCTAAAG+AGG - chr3_2:7660584-7660603 Msa0393570:intron 40.0%
TGCCTCTTTAGCGTTCAAAA+AGG + chr3_2:7660589-7660608 Msa0393560:intron 40.0%
! CCAGAGATTGATCCATCTTT+TGG + chr3_2:7660631-7660650 Msa0393560:intron 40.0%
CCAAAAGATGGATCAATCTC+TGG - chr3_2:7660628-7660647 Msa0393570:intron 40.0%
TTAACGTCTCTCAGTCTTAC+TGG - chr3_2:7660903-7660922 Msa0393570:intron 40.0%
GGTATCAATCTAATGCTTCC+CGG - chr3_2:7660924-7660943 Msa0393570:intron 40.0%
! TTTGAAATCCGCTTTGGTTG+TGG + chr3_2:7661213-7661232 Msa0393560:intron 40.0%
! GACTTCAAGTTACAGAAGGA+AGG + chr3_2:7661599-7661618 Msa0393560:intron 40.0%
! CAAGGACTTCAAGTTACAGA+AGG + chr3_2:7661603-7661622 Msa0393560:intron 40.0%
!! ATTTTGGTAGGTACCCATGA+AGG + chr3_2:7661644-7661663 Msa0393560:intron 40.0%
ATTGCTTCAAAACTCACCCT+CGG - chr3_2:7661673-7661692 Msa0393570:CDS 40.0%
CACACATACACACACAAGTT+AGG + chr3_2:7661878-7661897 Msa0393560:intron 40.0%
ACTTGTGTTGGAATGTCTCT+TGG - chr3_2:7662030-7662049 Msa0393570:CDS 40.0%
CTTGTGTTGGAATGTCTCTT+GGG - chr3_2:7662031-7662050 Msa0393570:CDS 40.0%
TTAGCAGCTTGGTTTCTGTT+TGG - chr3_2:7662155-7662174 Msa0393570:CDS 40.0%
! TCTTTGAAGACCTACTGCAT+TGG - chr3_2:7662391-7662410 Msa0393570:CDS 40.0%
! CATTGGTGATTACAGGATGT+TGG - chr3_2:7662408-7662427 Msa0393570:CDS 40.0%
!! CACTGATTCTGTCCTGAATT+TGG + chr3_2:7660533-7660552 Msa0393560:intron 40.0%
! TATGTGATGGAGAAGACAGT+CGG + chr3_2:7660562-7660581 Msa0393560:intron 40.0%
! CTCCTTTTTGAACGCTAAAG+AGG - chr3_2:7660584-7660603 Msa0393570:intron 40.0%
TGCCTCTTTAGCGTTCAAAA+AGG + chr3_2:7660589-7660608 Msa0393560:intron 40.0%
! CCAGAGATTGATCCATCTTT+TGG + chr3_2:7660631-7660650 Msa0393560:intron 40.0%
CCAAAAGATGGATCAATCTC+TGG - chr3_2:7660628-7660647 Msa0393570:intron 40.0%
TTAACGTCTCTCAGTCTTAC+TGG - chr3_2:7660903-7660922 Msa0393570:intron 40.0%
GGTATCAATCTAATGCTTCC+CGG - chr3_2:7660924-7660943 Msa0393570:intron 40.0%
! TTTGAAATCCGCTTTGGTTG+TGG + chr3_2:7661213-7661232 Msa0393560:intron 40.0%
! GACTTCAAGTTACAGAAGGA+AGG + chr3_2:7661599-7661618 Msa0393560:intron 40.0%
! CAAGGACTTCAAGTTACAGA+AGG + chr3_2:7661603-7661622 Msa0393560:intron 40.0%
!! ATTTTGGTAGGTACCCATGA+AGG + chr3_2:7661644-7661663 Msa0393560:intron 40.0%
ATTGCTTCAAAACTCACCCT+CGG - chr3_2:7661673-7661692 Msa0393570:CDS 40.0%
CACACATACACACACAAGTT+AGG + chr3_2:7661878-7661897 Msa0393560:intron 40.0%
ACTTGTGTTGGAATGTCTCT+TGG - chr3_2:7662030-7662049 Msa0393570:CDS 40.0%
CTTGTGTTGGAATGTCTCTT+GGG - chr3_2:7662031-7662050 Msa0393570:CDS 40.0%
TTAGCAGCTTGGTTTCTGTT+TGG - chr3_2:7662155-7662174 Msa0393570:CDS 40.0%
! TCTTTGAAGACCTACTGCAT+TGG - chr3_2:7662391-7662410 Msa0393570:CDS 40.0%
! CATTGGTGATTACAGGATGT+TGG - chr3_2:7662408-7662427 Msa0393570:CDS 40.0%
AGACACGAAGGCAAAGTAAG+AGG - chr3_2:7660490-7660509 Msa0393570:CDS 45.0%
GCAAAGTAAGAGGCAACCTA+GGG - chr3_2:7660500-7660519 Msa0393570:CDS 45.0%
TGAATTTGGATGTCGTCCCT+AGG + chr3_2:7660519-7660538 Msa0393560:intron 45.0%
TAGGGACGACATCCAAATTC+AGG - chr3_2:7660518-7660537 Msa0393570:intron 45.0%
CTTCGAGCAAAGCAAGAGAA+TGG + chr3_2:7660761-7660780 Msa0393560:intron 45.0%
GAGAGAGAGTGGTTAATGCT+GGG + chr3_2:7660995-7661014 Msa0393560:intron 45.0%
AGAGAGAGAGTGGTTAATGC+TGG + chr3_2:7660996-7661015 Msa0393560:intron 45.0%
!! AAGGTGCTTTAGAGAGAGAG+TGG + chr3_2:7661006-7661025 Msa0393560:intron 45.0%
!! GTTTGGTGCATGAAATGCGA+AGG + chr3_2:7661136-7661155 Msa0393560:intron 45.0%
! GTCTTGCTCCCAAAGAGTTT+TGG + chr3_2:7661305-7661324 Msa0393560:intron 45.0%
GGGATAGAACCTAAGCAATG+AGG + chr3_2:7661559-7661578 Msa0393560:intron 45.0%
! TCGGAGCGCTTCTATATTCA+AGG + chr3_2:7661621-7661640 Msa0393560:intron 45.0%
ATGATGTGAACCTTTGCCGA+GGG + chr3_2:7661692-7661711 Msa0393560:intron 45.0%
!! ACAAGTTAGGAGCATCTACG+AGG + chr3_2:7661865-7661884 Msa0393560:intron 45.0%
TGTTGGAATGTCTCTTGGGA+CGG - chr3_2:7662035-7662054 Msa0393570:CDS 45.0%
!!! GTAGATTTTGGCTCCTTTGC+AGG + chr3_2:7662126-7662145 Msa0393560:intron 45.0%
AGGTCTTCAAAGAGAAGAGC+TGG + chr3_2:7662384-7662403 Msa0393560:intron 45.0%
CCTGTAATCACCAATGCAGT+AGG + chr3_2:7662404-7662423 Msa0393560:intron 45.0%
! CCTACTGCATTGGTGATTAC+AGG - chr3_2:7662401-7662420 Msa0393570:CDS 45.0%
! GATGTTGGGTTGCAGACTAT+TGG - chr3_2:7662423-7662442 Msa0393570:CDS 45.0%
AGACACGAAGGCAAAGTAAG+AGG - chr3_2:7660490-7660509 Msa0393570:CDS 45.0%
GCAAAGTAAGAGGCAACCTA+GGG - chr3_2:7660500-7660519 Msa0393570:CDS 45.0%
TGAATTTGGATGTCGTCCCT+AGG + chr3_2:7660519-7660538 Msa0393560:intron 45.0%
TAGGGACGACATCCAAATTC+AGG - chr3_2:7660518-7660537 Msa0393570:intron 45.0%
CTTCGAGCAAAGCAAGAGAA+TGG + chr3_2:7660761-7660780 Msa0393560:intron 45.0%
GAGAGAGAGTGGTTAATGCT+GGG + chr3_2:7660995-7661014 Msa0393560:intron 45.0%
AGAGAGAGAGTGGTTAATGC+TGG + chr3_2:7660996-7661015 Msa0393560:intron 45.0%
!! AAGGTGCTTTAGAGAGAGAG+TGG + chr3_2:7661006-7661025 Msa0393560:intron 45.0%
!! GTTTGGTGCATGAAATGCGA+AGG + chr3_2:7661136-7661155 Msa0393560:intron 45.0%
! GTCTTGCTCCCAAAGAGTTT+TGG + chr3_2:7661305-7661324 Msa0393560:intron 45.0%
GGGATAGAACCTAAGCAATG+AGG + chr3_2:7661559-7661578 Msa0393560:intron 45.0%
! TCGGAGCGCTTCTATATTCA+AGG + chr3_2:7661621-7661640 Msa0393560:intron 45.0%
ATGATGTGAACCTTTGCCGA+GGG + chr3_2:7661692-7661711 Msa0393560:intron 45.0%
!! ACAAGTTAGGAGCATCTACG+AGG + chr3_2:7661865-7661884 Msa0393560:intron 45.0%
TGTTGGAATGTCTCTTGGGA+CGG - chr3_2:7662035-7662054 Msa0393570:CDS 45.0%
!!! GTAGATTTTGGCTCCTTTGC+AGG + chr3_2:7662126-7662145 Msa0393560:intron 45.0%
AGGTCTTCAAAGAGAAGAGC+TGG + chr3_2:7662384-7662403 Msa0393560:intron 45.0%
CCTGTAATCACCAATGCAGT+AGG + chr3_2:7662404-7662423 Msa0393560:intron 45.0%
! CCTACTGCATTGGTGATTAC+AGG - chr3_2:7662401-7662420 Msa0393570:CDS 45.0%
! GATGTTGGGTTGCAGACTAT+TGG - chr3_2:7662423-7662442 Msa0393570:CDS 45.0%
GGCAAAGTAAGAGGCAACCT+AGG - chr3_2:7660499-7660518 Msa0393570:CDS 50.0%
TCATTGACCGCTGTGCACTT+AGG - chr3_2:7661096-7661115 Msa0393570:intron 50.0%
CATTGACCGCTGTGCACTTA+GGG - chr3_2:7661097-7661116 Msa0393570:intron 50.0%
ATTGACCGCTGTGCACTTAG+GGG - chr3_2:7661098-7661117 Msa0393570:intron 50.0%
CATTACCCCTAAGTGCACAG+CGG + chr3_2:7661106-7661125 Msa0393560:intron 50.0%
TCCTACCACCACAACCAAAG+CGG - chr3_2:7661202-7661221 Msa0393570:intron 50.0%
GAAATCCGCTTTGGTTGTGG+TGG + chr3_2:7661210-7661229 Msa0393560:intron 50.0%
AAGGGAGCTCACGATGAATG+CGG + chr3_2:7661580-7661599 Msa0393560:intron 50.0%
TGGTAGGTACCCATGAAGGT+CGG + chr3_2:7661640-7661659 Msa0393560:intron 50.0%
TCAAAACTCACCCTCGGCAA+AGG - chr3_2:7661679-7661698 Msa0393570:CDS 50.0%
GATGATGTGAACCTTTGCCG+AGG + chr3_2:7661693-7661712 Msa0393560:intron 50.0%
TTGCAGGTCAGACAGACAAG+AGG + chr3_2:7662110-7662129 Msa0393560:intron 50.0%
CTTGTCTGTCTGACCTGCAA+AGG - chr3_2:7662110-7662129 Msa0393570:CDS 50.0%
GGCAAAGTAAGAGGCAACCT+AGG - chr3_2:7660499-7660518 Msa0393570:CDS 50.0%
TCATTGACCGCTGTGCACTT+AGG - chr3_2:7661096-7661115 Msa0393570:intron 50.0%
CATTGACCGCTGTGCACTTA+GGG - chr3_2:7661097-7661116 Msa0393570:intron 50.0%
ATTGACCGCTGTGCACTTAG+GGG - chr3_2:7661098-7661117 Msa0393570:intron 50.0%
CATTACCCCTAAGTGCACAG+CGG + chr3_2:7661106-7661125 Msa0393560:intron 50.0%
TCCTACCACCACAACCAAAG+CGG - chr3_2:7661202-7661221 Msa0393570:intron 50.0%
GAAATCCGCTTTGGTTGTGG+TGG + chr3_2:7661210-7661229 Msa0393560:intron 50.0%
AAGGGAGCTCACGATGAATG+CGG + chr3_2:7661580-7661599 Msa0393560:intron 50.0%
TGGTAGGTACCCATGAAGGT+CGG + chr3_2:7661640-7661659 Msa0393560:intron 50.0%
TCAAAACTCACCCTCGGCAA+AGG - chr3_2:7661679-7661698 Msa0393570:CDS 50.0%
GATGATGTGAACCTTTGCCG+AGG + chr3_2:7661693-7661712 Msa0393560:intron 50.0%
TTGCAGGTCAGACAGACAAG+AGG + chr3_2:7662110-7662129 Msa0393560:intron 50.0%
CTTGTCTGTCTGACCTGCAA+AGG - chr3_2:7662110-7662129 Msa0393570:CDS 50.0%
TCCGCTTTGGTTGTGGTGGT+AGG + chr3_2:7661206-7661225 Msa0393560:intron 55.0%
GTGTTTGGAGAGGGCCCAAA+TGG - chr3_2:7661373-7661392 Msa0393570:intron 55.0%
AGGGAGCTCACGATGAATGC+GGG + chr3_2:7661579-7661598 Msa0393560:intron 55.0%
!! TAGAAGCGCTCCGACCTTCA+TGG - chr3_2:7661627-7661646 Msa0393570:CDS 55.0%
!! AGAAGCGCTCCGACCTTCAT+GGG - chr3_2:7661628-7661647 Msa0393570:CDS 55.0%
TCCGCTTTGGTTGTGGTGGT+AGG + chr3_2:7661206-7661225 Msa0393560:intron 55.0%
GTGTTTGGAGAGGGCCCAAA+TGG - chr3_2:7661373-7661392 Msa0393570:intron 55.0%
AGGGAGCTCACGATGAATGC+GGG + chr3_2:7661579-7661598 Msa0393560:intron 55.0%
!! TAGAAGCGCTCCGACCTTCA+TGG - chr3_2:7661627-7661646 Msa0393570:CDS 55.0%
!! AGAAGCGCTCCGACCTTCAT+GGG - chr3_2:7661628-7661647 Msa0393570:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 7660483 7662473 7660483 ID=Msa0393570;Name=Msa0393570
chr3_2 mRNA 7660483 7662473 7660483 ID=Msa0393570-mRNA-1;Parent=Msa0393570;Name=Msa0393570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.66|1|1|3|0|388
chr3_2 exon 7661490 7662473 7661490 ID=Msa0393570-mRNA-1:exon:1979;Parent=Msa0393570-mRNA-1
chr3_2 exon 7661256 7661387 7661256 ID=Msa0393570-mRNA-1:exon:1978;Parent=Msa0393570-mRNA-1
chr3_2 exon 7660483 7660533 7660483 ID=Msa0393570-mRNA-1:exon:1977;Parent=Msa0393570-mRNA-1
chr3_2 CDS 7661490 7662473 7661490 ID=Msa0393570-mRNA-1:cds;Parent=Msa0393570-mRNA-1
chr3_2 CDS 7661256 7661387 7661256 ID=Msa0393570-mRNA-1:cds;Parent=Msa0393570-mRNA-1
chr3_2 CDS 7660483 7660533 7660483 ID=Msa0393570-mRNA-1:cds;Parent=Msa0393570-mRNA-1
Gene Sequence

>Msa0393570

ATGGTGGAGACACGAAGGCAAAGTAAGAGGCAACCTAGGGACGACATCCAAATTCAGGACAGAATCAGTGAATTGACCGACTGTCTTCTCCATCACATACTCTCCTTTTTGAACGCTAAAGAGGCAGTTCAAACTTGCATTTTATCCAAAAGATGGATCAATCTCTGGAAGACTCTTCCCACTCTTACGTTAAGTGTTGATCAATTTAGTACCGACCAAAGTTTTGAACAGTTCCTATCTATGTTGTTGTCTCTTCGTGATCACTCAACCGATATCCATTCTCTTGCTTTGCTCGAAGAGATCGATCATAATCTATACCAAAATATTATTGAATACGCTTTTTCACACAACATCCAACACTTTCATATCCATTACACTCATATTAATCTTCTTCCGTCCTGTTTCTTTTCATCTCTCACTTTAACGTCTCTCAGTCTTACTGGTATCAATCTAATGCTTCCCGGTGATCATCAAATATTTCCATGTTCTCATTCTCAGTCTTTCAATTTCCCAGCATTAACCACTCTCTCTCTAAAGCACCTTTCCTTTTGTTGTAACGATGATGGTTCTGTCGTTGACCCCTTTTCCACATTTAACATGTTGAATACTTTGATCATTGACCGCTGTGCACTTAGGGGTAATGCGCAAAACCTTCGCATTTCATGCACCAAACTTGTCAATTTAACTCTACATATGTATCGTTGTTTCTATGGTTTGTTTCCTACCACCACAACCAAAGCGGATTTCAAAATCGATTTCGGAATCGAGTTATGTGCTCCAACACTTCATTCCTTTGTTTTCTCTGGTGCTAATTATATTCCAAAACTCTTTGGGAGCAAGACCGTTTTCTCTTCTATCAAACATCTAGATATTTTTTTACACTATTACATGTGTTTGGAGAGGGCCCAAATGGTTAATCTATTCAAATTGCTTGTTGAACTTAGTAATATCGAATCATTGACCGTCACTTATTATGTTCTCACGGTTCTATCCCGCATTCATCGTGAGCTCCCTTCCTTCTGTAACTTGAAGTCCTTGAATATAGAAGCGCTCCGACCTTCATGGGTACCTACCAAAATTTTGGACTTATTGCTTCAAAACTCACCCTCGGCAAAGGATGTTGGGTTGCAGACTATTGGAATCTCAAAGTATTGCAGACTATTATAA
Protein sequence

>Msa0393570

MVETRRQSKRQPRDDIQIQDRISELTDCLLHHILSFLNAKEAVQTCILSKRWINLWKTLPTLTLSVDQFSTDQSFEQFLSMLLSLRDHSTDIHSLALLEEIDHNLYQNIIEYAFSHNIQHFHIHYTHINLLPSCFFSSLTLTSLSLTGINLMLPGDHQIFPCSHSQSFNFPALTTLSLKHLSFCCNDDGSVVDPFSTFNMLNTLIIDRCALRGNAQNLRISCTKLVNLTLHMYRCFYGLFPTTTTKADFKIDFGIELCAPTLHSFVFSGANYIPKLFGSKTVFSSIKHLDIFLHYYMCLERAQMVNLFKLLVELSNIESLTVTYYVLTVLSRIHRELPSFCNLKSLNIEALRPSWVPTKILDLLLQNSPSAKDVGLQTIGISKYCRLL*