AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0497420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497420 MtrunA17_Chr3g0092401 94.855 311 15 1 1 310 1 311 0.0 618
Msa0497420 MtrunA17_Chr4g0060721 56.522 345 104 10 1 310 1 334 1.37e-123 357
Msa0497420 MtrunA17_Chr6g0453211 53.774 318 108 6 2 292 1 306 3.56e-103 304
Msa0497420 MtrunA17_Chr7g0217221 68.056 216 46 4 2 195 1 215 1.42e-97 288
Msa0497420 MtrunA17_Chr7g0254411 60.377 212 45 4 2 198 1 188 2.80e-80 247
Msa0497420 MtrunA17_Chr7g0217741 55.422 166 62 3 2 155 1 166 2.54e-60 194
Msa0497420 MtrunA17_Chr1g0187761 62.044 137 49 1 2 138 1 134 3.40e-59 190
Msa0497420 MtrunA17_Chr6g0453471 68.067 119 38 0 2 120 1 119 6.51e-59 192
Msa0497420 MtrunA17_Chr4g0039971 67.500 120 39 0 1 120 1 120 6.88e-58 189
Msa0497420 MtrunA17_Chr1g0203411 66.949 118 39 0 2 119 1 118 5.83e-57 186
Msa0497420 MtrunA17_Chr2g0323411 66.102 118 40 0 2 119 1 118 3.87e-56 184
Msa0497420 MtrunA17_Chr4g0042671 67.227 119 39 0 2 120 1 119 6.35e-56 186
Msa0497420 MtrunA17_Chr3g0115821 64.706 119 42 0 2 120 1 119 7.47e-56 184
Msa0497420 MtrunA17_Chr1g0167661 67.241 116 38 0 2 117 1 116 5.38e-55 179
Msa0497420 MtrunA17_Chr4g0068061 66.379 116 39 0 2 117 1 116 1.58e-54 181
Msa0497420 MtrunA17_Chr8g0346561 61.290 124 48 0 2 125 1 124 3.15e-54 179
Msa0497420 MtrunA17_Chr1g0167691 66.379 116 39 0 2 117 1 116 3.27e-54 177
Msa0497420 MtrunA17_Chr2g0281071 66.667 120 39 1 2 120 1 120 5.36e-54 179
Msa0497420 MtrunA17_Chr5g0395281 63.025 119 44 0 2 120 1 119 1.12e-53 177
Msa0497420 MtrunA17_Chr7g0274581 60.169 118 47 0 2 119 1 118 1.50e-53 174
Msa0497420 MtrunA17_Chr7g0275911 61.983 121 46 0 2 122 1 121 2.03e-53 175
Msa0497420 MtrunA17_Chr5g0410961 64.706 119 42 0 2 120 1 119 3.05e-53 177
Msa0497420 MtrunA17_Chr4g0048511 65.000 120 41 1 2 120 1 120 8.03e-53 177
Msa0497420 MtrunA17_Chr3g0110351 63.866 119 43 0 2 120 1 119 1.86e-52 174
Msa0497420 MtrunA17_Chr5g0434571 63.333 120 44 0 1 120 36 155 2.63e-52 175
Msa0497420 MtrunA17_Chr8g0349261 66.102 118 38 2 2 117 1 118 2.70e-52 174
Msa0497420 MtrunA17_Chr7g0261281 58.779 131 53 1 2 132 1 130 4.12e-52 172
Msa0497420 MtrunA17_Chr4g0037141 63.793 116 42 0 2 117 1 116 1.28e-51 171
Msa0497420 MtrunA17_Chr4g0070611 38.144 291 157 8 2 284 1 276 3.71e-50 168
Msa0497420 MtrunA17_Chr4g0070641 57.576 132 56 0 2 133 1 132 5.47e-50 163
Msa0497420 MtrunA17_Chr3g0131121 62.069 116 44 0 2 117 1 116 1.36e-49 166
Msa0497420 MtrunA17_Chr4g0057031 62.185 119 45 0 2 120 1 119 2.52e-49 165
Msa0497420 MtrunA17_Chr3g0103281 62.931 116 43 0 2 117 1 116 3.86e-49 166
Msa0497420 MtrunA17_Chr7g0228891 50.000 158 66 1 2 146 1 158 6.60e-49 164
Msa0497420 MtrunA17_Chr3g0121241 60.833 120 45 1 6 125 35 152 8.27e-49 165
Msa0497420 MtrunA17_Chr6g0452271 59.664 119 48 0 2 120 1 119 1.30e-48 165
Msa0497420 MtrunA17_Chr5g0435101 61.017 118 46 0 3 120 1 118 2.11e-48 160
Msa0497420 MtrunA17_Chr7g0264641 59.350 123 49 1 2 123 1 123 2.60e-48 162
Msa0497420 MtrunA17_Chr3g0135311 63.248 117 42 1 2 117 1 117 1.12e-47 163
Msa0497420 MtrunA17_Chr1g0194951 59.483 116 47 0 2 117 1 116 4.59e-47 162
Msa0497420 MtrunA17_Chr4g0028311 61.538 117 44 1 2 117 1 117 1.05e-46 160
Msa0497420 MtrunA17_Chr8g0385321 59.483 116 47 0 2 117 1 116 1.84e-46 159
Msa0497420 MtrunA17_Chr1g0151941 58.974 117 47 1 2 117 1 117 2.42e-46 157
Msa0497420 MtrunA17_Chr2g0311221 60.550 109 43 0 4 112 5 113 3.09e-46 159
Msa0497420 MtrunA17_Chr1g0152011 60.684 117 45 1 2 117 1 117 4.30e-46 159
Msa0497420 MtrunA17_Chr5g0400821 60.684 117 45 1 2 117 1 117 7.74e-46 157
Msa0497420 MtrunA17_Chr7g0269831 55.000 140 61 1 2 139 1 140 2.29e-45 157
Msa0497420 MtrunA17_Chr2g0327351 63.063 111 40 1 2 111 1 111 3.20e-45 156
Msa0497420 MtrunA17_Chr8g0387421 58.475 118 49 0 2 119 1 118 4.60e-45 155
Msa0497420 MtrunA17_Chr2g0323351 58.475 118 49 0 2 119 1 118 6.57e-45 153
Msa0497420 MtrunA17_Chr1g0193371 57.600 125 50 1 2 126 1 122 1.18e-44 155
Msa0497420 MtrunA17_Chr2g0309911 58.559 111 46 0 7 117 5 115 4.22e-44 152
Msa0497420 MtrunA17_Chr4g0044421 56.780 118 51 0 2 119 1 118 1.06e-43 148
Msa0497420 MtrunA17_Chr4g0022931 49.655 145 68 3 2 145 1 141 1.28e-43 150
Msa0497420 MtrunA17_Chr4g0022881 52.555 137 63 2 2 137 1 136 1.82e-43 149
Msa0497420 MtrunA17_Chr1g0211161 58.824 119 49 0 1 119 1 119 4.35e-43 147
Msa0497420 MtrunA17_Chr4g0058631 51.007 149 61 2 2 138 1 149 5.12e-43 151
Msa0497420 MtrunA17_Chr5g0417821 56.364 110 48 0 11 120 5 114 1.07e-42 148
Msa0497420 MtrunA17_Chr7g0270891 56.780 118 51 0 2 119 1 118 1.11e-42 150
Msa0497420 MtrunA17_Chr1g0193801 55.932 118 52 0 2 119 1 118 1.14e-42 151
Msa0497420 MtrunA17_Chr4g0022901 56.034 116 50 1 2 116 1 116 1.56e-42 147
Msa0497420 MtrunA17_Chr4g0022911 55.172 116 51 1 2 116 1 116 1.66e-42 148
Msa0497420 MtrunA17_Chr2g0330041 58.559 111 46 0 7 117 6 116 2.25e-42 150
Msa0497420 MtrunA17_Chr4g0072751 60.360 111 43 1 2 111 1 111 2.59e-42 149
Msa0497420 MtrunA17_Chr4g0054391 59.091 110 44 1 2 110 1 110 2.99e-42 147
Msa0497420 MtrunA17_Chr4g0022891 55.752 113 50 0 2 114 1 113 4.40e-42 145
Msa0497420 MtrunA17_Chr5g0397231 61.905 105 40 0 7 111 6 110 5.64e-42 148
Msa0497420 MtrunA17_Chr3g0117091 58.475 118 49 0 2 119 1 118 9.66e-42 147
Msa0497420 MtrunA17_Chr7g0271241 61.468 109 42 0 2 110 1 109 1.54e-41 147
Msa0497420 MtrunA17_Chr8g0342541 56.757 111 48 0 7 117 6 116 1.63e-41 147
Msa0497420 MtrunA17_Chr8g0343831 59.322 118 44 1 2 119 1 114 3.37e-41 143
Msa0497420 MtrunA17_Chr8g0342521 56.757 111 48 0 7 117 6 116 4.54e-41 145
Msa0497420 MtrunA17_Chr6g0487491 53.435 131 52 2 2 123 1 131 1.81e-40 142
Msa0497420 MtrunA17_Chr4g0055981 48.299 147 66 1 13 149 55 201 2.41e-40 140
Msa0497420 MtrunA17_Chr7g0228231 57.009 107 46 0 13 119 14 120 2.98e-40 139
Msa0497420 MtrunA17_Chr7g0240821 58.716 109 45 0 17 125 5 113 3.48e-40 140
Msa0497420 MtrunA17_Chr1g0203441 57.547 106 45 0 14 119 14 119 5.05e-40 141
Msa0497420 MtrunA17_Chr3g0099131 56.075 107 47 0 13 119 41 147 6.06e-40 146
Msa0497420 MtrunA17_Chr2g0328771 51.240 121 59 0 13 133 20 140 6.28e-40 142
Msa0497420 MtrunA17_Chr6g0450101 49.219 128 63 1 2 127 1 128 9.39e-40 138
Msa0497420 MtrunA17_Chr1g0168661 59.048 105 43 0 14 118 22 126 2.54e-39 139
Msa0497420 MtrunA17_Chr4g0032401 52.066 121 58 0 13 133 17 137 3.34e-39 140
Msa0497420 MtrunA17_Chr5g0434911 57.273 110 47 0 8 117 16 125 3.92e-39 139
Msa0497420 MtrunA17_Chr8g0354661 55.556 108 48 0 11 118 35 142 4.28e-39 144
Msa0497420 MtrunA17_Chr1g0194291 55.046 109 49 0 12 120 20 128 6.52e-39 138
Msa0497420 MtrunA17_Chr2g0322521 57.944 107 45 0 10 116 26 132 7.62e-39 141
Msa0497420 MtrunA17_Chr5g0434931 59.434 106 43 0 12 117 34 139 7.62e-39 138
Msa0497420 MtrunA17_Chr3g0080861 54.630 108 49 0 11 118 35 142 9.56e-39 143
Msa0497420 MtrunA17_Chr6g0470971 55.963 109 48 0 8 116 9 117 1.04e-38 138
Msa0497420 MtrunA17_Chr3g0088461 55.963 109 48 0 10 118 19 127 2.36e-38 138
Msa0497420 MtrunA17_Chr1g0186061 57.143 105 45 0 14 118 21 125 2.64e-38 136
Msa0497420 MtrunA17_Chr4g0042611 65.909 88 30 0 2 89 1 88 2.75e-38 130
Msa0497420 MtrunA17_Chr8g0342481 55.357 112 49 1 7 117 6 117 3.29e-38 139
Msa0497420 MtrunA17_Chr2g0327821 55.769 104 46 0 13 116 6 109 3.61e-38 135
Msa0497420 MtrunA17_Chr1g0194301 53.704 108 50 0 13 120 33 140 5.55e-38 135
Msa0497420 MtrunA17_Chr7g0220341 57.798 109 44 1 11 117 23 131 9.03e-38 135
Msa0497420 MtrunA17_Chr1g0209661 47.015 134 65 2 13 145 27 155 2.33e-37 135
Msa0497420 MtrunA17_Chr5g0434831 57.547 106 45 0 12 117 6 111 3.81e-37 131
Msa0497420 MtrunA17_Chr1g0154031 55.769 104 46 0 13 116 76 179 1.27e-36 135
Msa0497420 MtrunA17_Chr2g0294811 59.783 92 37 0 2 93 1 92 1.82e-36 127
Msa0497420 MtrunA17_Chr5g0434841 56.604 106 46 0 12 117 19 124 7.29e-36 131
Msa0497420 MtrunA17_Chr7g0228991 57.547 106 45 0 12 117 28 133 9.97e-36 130
Msa0497420 MtrunA17_Chr7g0247131 72.368 76 21 0 45 120 10 85 1.70e-35 129
Msa0497420 MtrunA17_Chr8g0360111 56.863 102 44 0 12 113 24 125 9.35e-35 127
Msa0497420 MtrunA17_Chr1g0180391 51.887 106 51 0 13 118 19 124 4.61e-34 124
Msa0497420 MtrunA17_Chr4g0068921 49.107 112 57 0 9 120 20 131 9.36e-34 122
Msa0497420 MtrunA17_Chr2g0293911 49.107 112 57 0 9 120 20 131 1.35e-33 125
Msa0497420 MtrunA17_Chr5g0395221 60.227 88 35 0 2 89 1 88 1.69e-33 118
Msa0497420 MtrunA17_Chr8g0334881 49.541 109 53 2 13 120 10 117 3.83e-32 121
Msa0497420 MtrunA17_Chr5g0441131 48.624 109 55 1 11 118 7 115 4.79e-32 117
Msa0497420 MtrunA17_Chr4g0013361 47.321 112 57 2 9 119 6 116 7.01e-32 120
Msa0497420 MtrunA17_Chr2g0323321 51.429 105 50 1 2 106 1 104 1.67e-31 114
Msa0497420 MtrunA17_Chr1g0192411 47.273 110 58 0 9 118 8 117 6.56e-31 120
Msa0497420 MtrunA17_Chr5g0440781 47.115 104 54 1 13 115 12 115 3.10e-30 113
Msa0497420 MtrunA17_Chr3g0099141 54.118 85 39 0 13 97 40 124 3.33e-30 111
Msa0497420 MtrunA17_Chr4g0030881 47.273 110 51 1 14 116 8 117 6.40e-30 114
Msa0497420 MtrunA17_Chr5g0440761 47.115 104 54 1 13 115 12 115 2.60e-29 112
Msa0497420 MtrunA17_Chr5g0441141 45.872 109 57 2 13 120 12 119 3.88e-29 112
Msa0497420 MtrunA17_Chr8g0342531 44.828 116 59 1 2 112 1 116 5.95e-29 108
Msa0497420 MtrunA17_Chr8g0342511 54.023 87 40 0 2 88 1 87 9.54e-29 106
Msa0497420 MtrunA17_Chr4g0008551 50.000 102 50 1 15 116 38 138 1.05e-28 113
Msa0497420 MtrunA17_Chr8g0342461 52.222 90 42 1 2 90 1 90 3.44e-26 100
Msa0497420 MtrunA17_Chr5g0401731 45.763 118 53 3 15 128 15 125 5.65e-26 105
Msa0497420 MtrunA17_Chr6g0454921 45.455 110 51 2 15 120 15 119 7.99e-26 102
Msa0497420 MtrunA17_Chr8g0342471 52.222 90 42 1 2 90 1 90 9.22e-26 99.8
Msa0497420 MtrunA17_Chr7g0229101 65.714 70 24 0 45 114 4 73 1.44e-25 101
Msa0497420 MtrunA17_Chr3g0133601 42.742 124 67 2 15 135 37 159 1.73e-25 101
Msa0497420 MtrunA17_Chr4g0053431 46.226 106 48 2 15 116 5 105 2.46e-25 102
Msa0497420 MtrunA17_Chr7g0229131 60.274 73 29 0 45 117 4 76 1.67e-24 97.4
Msa0497420 MtrunA17_Chr3g0139671 40.909 110 64 1 15 124 85 193 1.84e-23 100
Msa0497420 MtrunA17_Chr5g0434901 61.765 68 26 0 47 114 7 74 2.17e-22 90.1
Msa0497420 MtrunA17_Chr7g0238631 43.860 114 55 2 15 124 113 221 3.52e-22 96.7
Msa0497420 MtrunA17_Chr1g0157731 38.182 110 67 1 15 124 91 199 5.33e-22 96.7
Msa0497420 MtrunA17_Chr6g0480581 40.708 113 63 2 15 124 4 115 1.02e-21 91.7
Msa0497420 MtrunA17_Chr5g0425591 43.529 85 47 1 11 94 7 91 1.92e-21 87.0
Msa0497420 MtrunA17_Chr3g0117511 41.441 111 64 1 9 119 177 286 2.07e-21 94.0
Msa0497420 MtrunA17_Chr7g0238651 30.392 204 121 5 18 216 10 197 2.51e-21 92.8
Msa0497420 MtrunA17_Chr4g0058991 40.541 111 65 1 9 119 203 312 3.63e-21 93.2
Msa0497420 MtrunA17_Chr5g0429661 42.157 102 58 1 15 116 122 222 3.79e-21 92.4
Msa0497420 MtrunA17_Chr5g0437321 46.465 99 52 1 15 113 19 116 9.42e-21 90.1
Msa0497420 MtrunA17_Chr6g0460671 38.679 106 64 1 15 120 99 203 1.07e-20 90.9
Msa0497420 MtrunA17_Chr6g0460661 41.237 97 56 1 15 111 16 111 5.20e-20 85.1
Msa0497420 MtrunA17_Chr4g0042501 40.000 105 62 1 15 119 105 208 1.22e-19 88.6
Msa0497420 MtrunA17_Chr6g0453751 43.478 92 43 2 12 94 19 110 4.34e-19 81.6
Msa0497420 MtrunA17_Chr5g0417621 39.048 105 63 1 15 119 134 237 5.43e-19 87.0
Msa0497420 MtrunA17_Chr3g0093811 50.000 76 38 0 45 120 14 89 5.84e-19 84.7
Msa0497420 MtrunA17_Chr7g0228531 37.391 115 70 2 11 125 216 328 2.91e-18 84.7
Msa0497420 MtrunA17_Chr7g0254261 39.216 102 61 1 15 116 89 189 2.37e-17 81.6
Msa0497420 MtrunA17_Chr3g0125801 39.048 105 63 1 15 119 16 119 3.99e-17 80.1
Msa0497420 MtrunA17_Chr5g0397841 39.583 96 57 1 15 110 110 204 5.64e-17 81.3
Msa0497420 MtrunA17_Chr7g0228401 40.449 89 52 1 26 114 290 377 3.78e-15 75.9
Msa0497420 MtrunA17_Chr1g0193901 51.724 58 27 1 13 69 11 68 4.05e-15 70.5
Msa0497420 MtrunA17_Chr1g0193891 51.724 58 27 1 13 69 11 68 4.05e-15 70.5
Msa0497420 MtrunA17_Chr1g0193871 51.724 58 27 1 13 69 11 68 4.05e-15 70.5
Msa0497420 MtrunA17_Chr1g0193881 51.724 58 27 1 13 69 11 68 4.05e-15 70.5
Msa0497420 MtrunA17_Chr5g0416341 36.634 101 63 1 18 118 29 128 4.57e-15 75.5
Msa0497420 MtrunA17_Chr1g0177901 40.659 91 53 1 24 114 3 92 4.61e-15 72.8
Msa0497420 MtrunA17_Chr7g0228481 36.283 113 69 3 11 122 216 326 9.25e-15 74.3
Msa0497420 MtrunA17_Chr8g0362231 36.634 101 63 1 18 118 25 124 1.32e-14 73.9
Msa0497420 MtrunA17_Chr7g0233061 36.937 111 58 4 15 119 180 284 3.54e-14 72.4
Msa0497420 MtrunA17_Chr7g0247141 58.333 48 19 1 2 48 1 48 4.11e-14 66.2
Msa0497420 MtrunA17_Chr5g0434871 62.791 43 16 0 75 117 2 44 3.85e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497420 AT1G74650.1 51.585 347 105 8 2 304 1 328 4.98e-106 312
Msa0497420 AT3G47600.1 57.931 290 66 7 2 243 1 282 2.51e-103 306
Msa0497420 AT5G62470.2 51.541 357 85 12 2 290 1 337 3.27e-103 306
Msa0497420 AT5G62470.1 51.541 357 84 13 2 290 1 336 1.33e-101 302
Msa0497420 AT3G28910.1 48.955 335 116 7 2 299 1 317 2.80e-99 295
Msa0497420 AT1G08810.1 63.366 202 44 3 2 202 1 173 9.56e-85 256
Msa0497420 AT3G47600.2 51.626 246 63 7 46 243 39 276 1.79e-67 214
Msa0497420 AT5G15310.4 46.606 221 94 6 2 206 1 213 2.17e-60 193
Msa0497420 AT5G15310.1 70.000 120 36 0 2 121 1 120 3.41e-60 195
Msa0497420 AT5G15310.2 70.000 120 36 0 2 121 1 120 4.48e-60 194
Msa0497420 AT3G01140.2 56.287 167 60 3 2 155 1 167 8.16e-60 195
Msa0497420 AT3G01140.1 55.357 168 62 3 1 155 43 210 5.46e-59 194
Msa0497420 AT3G61250.1 51.205 166 70 2 2 156 1 166 4.19e-57 186
Msa0497420 AT2G31180.1 60.284 141 53 2 2 139 1 141 3.17e-56 182
Msa0497420 AT4G21440.1 67.227 119 39 0 2 120 1 119 3.72e-56 186
Msa0497420 AT3G23250.1 65.812 117 40 0 2 118 1 117 3.45e-55 181
Msa0497420 AT1G06180.1 68.103 116 37 0 2 117 1 116 3.81e-55 179
Msa0497420 AT5G16770.4 45.000 220 105 2 2 221 1 204 4.78e-55 182
Msa0497420 AT5G16770.3 45.000 220 105 2 2 221 1 204 4.78e-55 182
Msa0497420 AT3G02940.2 66.379 116 39 0 2 117 1 116 5.82e-55 181
Msa0497420 AT4G28110.1 65.254 118 41 0 2 119 1 118 7.41e-55 180
Msa0497420 AT5G16770.1 45.000 220 105 2 2 221 1 204 9.11e-55 181
Msa0497420 AT5G16770.2 45.000 220 105 2 2 221 1 204 9.11e-55 181
Msa0497420 AT3G02940.1 66.379 116 39 0 2 117 1 116 1.40e-54 181
Msa0497420 AT3G02940.3 66.379 116 39 0 2 117 1 116 1.40e-54 181
Msa0497420 AT4G05100.1 65.833 120 40 1 2 120 1 120 1.79e-53 177
Msa0497420 AT1G56160.1 63.158 114 42 0 4 117 5 118 1.00e-52 175
Msa0497420 AT1G66230.1 63.025 119 44 0 2 120 1 119 1.13e-52 174
Msa0497420 AT1G34670.1 62.185 119 45 0 2 120 1 119 2.69e-52 176
Msa0497420 AT1G35515.1 57.037 135 56 1 2 134 1 135 1.06e-51 169
Msa0497420 AT4G09460.1 63.793 116 42 0 2 117 1 116 1.07e-51 170
Msa0497420 AT4G17785.2 65.000 120 41 1 2 120 1 120 1.46e-51 173
Msa0497420 AT4G17785.1 65.000 120 41 1 2 120 1 120 1.92e-51 173
Msa0497420 AT5G49330.1 58.730 126 52 0 2 127 1 126 2.07e-51 173
Msa0497420 AT5G60890.1 62.712 118 44 0 2 119 1 118 2.21e-51 171
Msa0497420 AT1G79180.1 60.163 123 49 0 4 126 5 127 2.24e-51 171
Msa0497420 AT4G38620.1 63.793 116 42 0 2 117 1 116 3.01e-51 171
Msa0497420 AT3G13540.1 65.179 112 39 0 6 117 16 127 3.78e-51 169
Msa0497420 AT1G22640.1 62.931 116 43 0 2 117 1 116 6.78e-51 169
Msa0497420 AT2G16720.1 63.793 116 42 0 2 117 1 116 7.04e-51 169
Msa0497420 AT5G61420.2 62.931 116 43 0 2 117 1 116 7.15e-51 172
Msa0497420 AT1G18570.1 63.866 119 42 1 2 119 1 119 8.04e-51 172
Msa0497420 AT5G54230.1 69.444 108 33 0 13 120 12 119 1.18e-50 170
Msa0497420 AT5G07690.1 62.931 116 43 0 2 117 1 116 3.45e-50 169
Msa0497420 AT5G16600.1 59.664 119 48 0 2 120 1 119 1.54e-49 167
Msa0497420 AT1G74080.1 61.017 118 46 0 2 119 1 118 3.06e-49 167
Msa0497420 AT5G10280.1 59.664 119 48 0 2 120 1 119 3.64e-49 167
Msa0497420 AT4G34990.1 62.931 116 43 0 2 117 1 116 3.71e-49 165
Msa0497420 AT4G12350.1 61.345 119 46 0 2 120 1 119 3.73e-49 165
Msa0497420 AT1G74650.3 41.328 271 96 8 78 304 1 252 3.88e-49 164
Msa0497420 AT5G65230.1 59.664 119 48 0 2 120 1 119 4.69e-49 166
Msa0497420 AT5G56110.1 62.931 116 43 0 2 117 1 116 6.19e-49 166
Msa0497420 AT2G47460.1 61.207 116 45 0 2 117 1 116 1.22e-48 166
Msa0497420 AT1G16490.1 59.649 114 46 0 4 117 5 118 2.55e-48 163
Msa0497420 AT3G62610.1 62.931 116 43 0 2 117 1 116 3.22e-48 164
Msa0497420 AT4G37780.1 61.538 117 44 1 2 117 1 117 8.99e-48 162
Msa0497420 AT5G07700.1 60.345 116 46 0 2 117 1 116 9.67e-48 163
Msa0497420 AT5G07700.2 60.345 116 46 0 2 117 1 116 9.67e-48 163
Msa0497420 AT4G22680.1 60.504 119 47 0 2 120 1 119 1.76e-47 160
Msa0497420 AT3G12820.1 62.069 116 44 0 4 119 5 120 3.44e-47 159
Msa0497420 AT5G23000.1 61.538 117 44 1 2 117 1 117 9.94e-47 160
Msa0497420 AT5G57620.1 59.829 117 46 1 2 117 1 117 2.36e-46 159
Msa0497420 AT3G49690.1 61.538 117 44 1 2 117 1 117 5.32e-46 158
Msa0497420 AT5G14340.1 57.983 119 50 0 2 120 13 131 9.55e-46 156
Msa0497420 AT1G74430.1 65.741 108 37 0 12 119 11 118 3.75e-45 154
Msa0497420 AT5G26660.1 59.322 118 48 0 2 119 1 118 8.04e-45 156
Msa0497420 AT5G62320.1 54.688 128 51 1 1 121 1 128 8.43e-45 153
Msa0497420 AT1G63910.1 58.475 118 49 0 2 119 1 118 9.25e-45 156
Msa0497420 AT1G79180.2 47.436 156 49 1 4 126 5 160 1.19e-44 155
Msa0497420 AT5G65790.1 59.829 117 46 1 2 117 1 117 1.27e-44 156
Msa0497420 AT1G57560.1 57.627 118 50 0 2 119 1 118 4.48e-44 153
Msa0497420 AT1G57560.2 57.627 118 50 0 2 119 1 118 5.92e-44 152
Msa0497420 AT5G14750.1 62.500 104 39 0 14 117 17 120 6.21e-44 149
Msa0497420 AT4G01680.3 58.974 117 48 0 2 118 1 117 6.90e-44 150
Msa0497420 AT1G09540.1 58.475 118 49 0 2 119 1 118 1.05e-43 153
Msa0497420 AT2G36890.1 58.120 117 48 1 2 117 1 117 1.32e-43 151
Msa0497420 AT2G36890.2 58.120 117 48 1 2 117 42 158 1.91e-43 152
Msa0497420 AT5G40330.1 62.500 104 39 0 14 117 13 116 2.45e-43 148
Msa0497420 AT4G01680.1 58.974 117 48 0 2 118 1 117 4.38e-43 151
Msa0497420 AT3G13890.2 58.559 111 46 0 7 117 6 116 5.83e-43 151
Msa0497420 AT3G12720.1 57.658 111 47 0 7 117 16 126 6.62e-43 150
Msa0497420 AT1G18710.1 61.111 108 42 0 12 119 11 118 1.83e-42 147
Msa0497420 AT3G27920.1 44.643 168 83 2 14 171 15 182 3.68e-42 145
Msa0497420 AT5G35550.1 57.025 121 51 1 13 133 14 133 5.03e-42 146
Msa0497420 AT3G28470.1 57.273 110 47 0 2 111 1 110 6.30e-42 147
Msa0497420 AT2G32460.1 59.259 108 44 0 9 116 14 121 1.85e-41 150
Msa0497420 AT5G52600.1 60.577 104 41 0 13 116 12 115 2.65e-41 142
Msa0497420 AT2G32460.2 60.000 105 42 0 12 116 5 109 2.74e-41 149
Msa0497420 AT3G01530.1 57.547 106 45 0 13 118 25 130 6.88e-41 141
Msa0497420 AT1G74650.2 38.846 260 96 8 89 304 7 247 1.89e-40 142
Msa0497420 AT5G55020.1 57.798 109 46 0 11 119 24 132 2.18e-40 148
Msa0497420 AT3G24310.1 59.813 107 43 0 12 118 17 123 4.90e-40 141
Msa0497420 AT3G13890.1 54.167 120 46 1 7 117 6 125 6.94e-40 143
Msa0497420 AT4G01680.2 53.488 129 48 1 2 118 1 129 1.22e-39 142
Msa0497420 AT3G30210.1 57.009 107 46 0 12 118 26 132 1.27e-39 140
Msa0497420 AT3G28910.2 36.567 268 97 8 78 299 1 241 1.92e-39 139
Msa0497420 AT5G06100.1 55.238 105 47 0 12 116 31 135 2.36e-39 144
Msa0497420 AT4G13480.1 59.048 105 43 0 14 118 7 111 3.20e-39 139
Msa0497420 AT3G27810.1 54.054 111 51 0 13 123 20 130 4.05e-39 137
Msa0497420 AT5G12870.1 54.955 111 50 0 13 123 18 128 5.04e-39 139
Msa0497420 AT1G66370.1 59.048 105 43 0 12 116 7 111 5.29e-39 138
Msa0497420 AT2G26960.1 51.613 124 59 1 10 133 17 139 7.64e-39 142
Msa0497420 AT5G06100.5 55.238 105 47 0 12 116 31 135 8.11e-39 143
Msa0497420 AT5G06100.2 55.238 105 47 0 12 116 31 135 8.11e-39 143
Msa0497420 AT5G06100.3 55.238 105 47 0 12 116 31 135 8.11e-39 143
Msa0497420 AT5G06100.4 55.238 105 47 0 12 116 31 135 8.11e-39 143
Msa0497420 AT3G11440.2 54.808 104 47 0 13 116 41 144 8.83e-39 142
Msa0497420 AT2G47190.1 42.197 173 95 2 5 176 12 180 9.57e-39 138
Msa0497420 AT5G40350.1 54.054 111 51 0 13 123 17 127 1.49e-38 135
Msa0497420 AT3G11440.3 54.808 104 47 0 13 116 41 144 3.50e-38 142
Msa0497420 AT3G11440.4 54.808 104 47 0 13 116 41 144 3.50e-38 142
Msa0497420 AT3G11440.1 54.808 104 47 0 13 116 41 144 3.50e-38 142
Msa0497420 AT4G26930.1 56.190 105 46 0 11 115 17 121 3.70e-38 139
Msa0497420 AT3G08500.1 54.717 106 48 0 13 118 30 135 5.22e-38 138
Msa0497420 AT1G25340.1 46.324 136 69 1 14 149 19 150 1.36e-37 135
Msa0497420 AT3G46130.1 54.286 105 48 0 12 116 8 112 8.65e-37 132
Msa0497420 AT1G48000.1 54.630 108 49 0 11 118 30 137 1.19e-36 132
Msa0497420 AT5G59780.3 55.340 103 46 0 14 116 9 111 1.24e-36 131
Msa0497420 AT1G68320.1 51.376 109 53 0 13 121 19 127 3.87e-36 131
Msa0497420 AT5G52260.1 56.311 103 45 0 14 116 13 115 7.43e-35 127
Msa0497420 AT1G66380.1 58.095 105 44 0 12 116 7 111 8.58e-35 124
Msa0497420 AT3G48920.1 50.980 102 50 0 14 115 19 120 1.44e-34 127
Msa0497420 AT4G25560.1 51.786 112 54 0 14 125 11 122 1.80e-34 127
Msa0497420 AT1G25340.2 44.853 136 66 2 14 149 19 145 5.60e-34 125
Msa0497420 AT1G25340.3 44.853 136 66 2 14 149 19 145 9.46e-34 125
Msa0497420 AT1G56650.1 57.143 105 45 0 12 116 7 111 2.30e-33 123
Msa0497420 AT5G49620.1 51.786 112 54 0 9 120 22 133 2.32e-33 125
Msa0497420 AT1G66390.1 57.143 105 45 0 12 116 7 111 2.54e-33 123
Msa0497420 AT3G53200.1 53.846 104 48 0 13 116 9 112 6.87e-33 122
Msa0497420 AT3G06490.1 50.893 112 55 0 9 120 15 126 7.64e-33 124
Msa0497420 AT3G60460.1 49.541 109 53 2 13 120 11 118 8.10e-33 123
Msa0497420 AT2G26950.1 39.412 170 97 5 15 181 18 184 7.81e-32 122
Msa0497420 AT5G35550.2 62.500 88 32 1 46 133 50 136 3.15e-30 115
Msa0497420 AT5G49620.2 46.032 126 54 1 9 120 22 147 8.65e-30 115
Msa0497420 AT3G12820.2 68.056 72 23 0 48 119 1 72 1.47e-29 111
Msa0497420 AT5G14750.3 67.143 70 23 0 48 117 17 86 2.47e-29 110
Msa0497420 AT2G39880.1 51.887 106 42 2 15 116 50 150 9.55e-29 114
Msa0497420 AT5G26660.2 64.865 74 26 0 46 119 14 87 2.95e-28 111
Msa0497420 AT3G55730.1 47.368 114 51 2 15 124 56 164 2.53e-27 110
Msa0497420 AT3G46130.3 58.974 78 32 0 39 116 3 80 1.92e-26 104
Msa0497420 AT2G23290.1 49.057 106 45 2 15 116 13 113 2.44e-26 106
Msa0497420 AT4G37260.1 45.217 115 54 2 15 125 13 122 8.33e-26 105
Msa0497420 AT5G59780.2 61.972 71 27 0 46 116 20 90 1.49e-25 101
Msa0497420 AT3G46130.4 61.972 71 27 0 46 116 20 90 2.12e-25 102
Msa0497420 AT3G09230.1 46.729 107 48 2 15 117 55 156 3.27e-25 104
Msa0497420 AT3G53200.2 59.211 76 31 0 41 116 4 79 9.14e-25 99.4
Msa0497420 AT5G02320.1 45.045 111 60 1 15 125 127 236 1.35e-24 103
Msa0497420 AT5G02320.2 45.045 111 60 1 15 125 127 236 1.35e-24 103
Msa0497420 AT5G02320.3 45.045 111 60 1 15 125 67 176 1.61e-24 103
Msa0497420 AT3G27810.2 53.846 78 36 0 46 123 4 81 5.43e-24 96.7
Msa0497420 AT1G66380.3 61.039 77 30 0 40 116 2 78 1.69e-23 93.2
Msa0497420 AT5G40350.2 53.846 78 36 0 46 123 5 82 3.19e-23 94.4
Msa0497420 AT5G67300.1 41.880 117 59 2 15 127 6 117 7.19e-23 96.7
Msa0497420 AT5G11510.3 40.000 110 65 1 15 124 81 189 9.10e-23 99.4
Msa0497420 AT5G11510.1 40.000 110 65 1 15 124 81 189 9.10e-23 99.4
Msa0497420 AT5G11510.4 40.000 110 65 1 15 124 81 189 9.10e-23 99.4
Msa0497420 AT5G11510.2 40.000 110 65 1 15 124 81 189 9.64e-23 99.0
Msa0497420 AT5G11510.5 40.000 110 65 1 15 124 81 189 9.69e-23 99.0
Msa0497420 AT4G32730.5 38.182 110 67 1 15 124 87 195 2.49e-22 97.8
Msa0497420 AT4G32730.4 38.182 110 67 1 15 124 87 195 2.49e-22 97.8
Msa0497420 AT4G32730.3 38.182 110 67 1 15 124 87 195 2.49e-22 97.8
Msa0497420 AT4G32730.2 38.182 110 67 1 15 124 87 195 2.49e-22 97.8
Msa0497420 AT4G32730.1 38.182 110 67 1 15 124 87 195 2.68e-22 97.8
Msa0497420 AT3G50060.1 43.396 106 51 2 15 116 6 106 3.10e-22 94.7
Msa0497420 AT3G27785.1 39.831 118 70 1 9 126 183 299 4.78e-22 96.3
Msa0497420 AT4G18770.1 38.739 111 67 1 9 119 211 320 1.87e-21 94.4
Msa0497420 AT1G69560.1 40.000 110 65 1 10 119 102 210 2.42e-21 92.8
Msa0497420 AT5G40360.1 39.806 103 61 1 13 115 156 257 2.63e-21 93.2
Msa0497420 AT1G22640.3 63.793 58 21 0 60 117 2 59 3.19e-21 89.7
Msa0497420 AT1G69560.2 40.000 110 65 1 10 119 118 226 3.28e-21 92.8
Msa0497420 AT1G66380.2 47.959 98 50 1 12 108 7 104 4.24e-21 87.0
Msa0497420 AT3G09370.2 44.118 102 56 1 15 116 135 235 4.91e-21 93.6
Msa0497420 AT3G09370.1 44.118 102 56 1 15 116 130 230 5.17e-21 93.6
Msa0497420 AT5G14750.4 65.517 58 20 0 60 117 2 59 5.93e-21 87.4
Msa0497420 AT5G14750.2 65.517 58 20 0 60 117 2 59 5.93e-21 87.4
Msa0497420 AT3G09370.3 44.118 102 56 1 15 116 143 243 6.24e-21 93.2
Msa0497420 AT3G23250.2 64.407 59 21 0 60 118 2 60 1.40e-20 89.0
Msa0497420 AT5G58850.1 37.008 127 75 3 15 138 105 229 1.42e-20 91.7
Msa0497420 AT5G11050.1 35.385 130 79 2 13 138 103 231 1.53e-20 91.7
Msa0497420 AT1G17950.1 39.216 102 61 1 15 116 5 105 2.73e-20 88.6
Msa0497420 AT1G18960.1 39.496 119 65 4 2 120 1 112 4.68e-20 89.0
Msa0497420 AT1G26780.1 39.252 107 64 1 13 119 96 201 4.77e-20 88.6
Msa0497420 AT1G26780.2 39.252 107 64 1 13 119 96 201 6.21e-20 89.4
Msa0497420 AT1G71030.2 44.186 86 48 0 48 133 1 86 8.57e-20 85.5
Msa0497420 AT1G71030.1 44.186 86 48 0 48 133 15 100 8.80e-20 85.9
Msa0497420 AT2G37630.1 39.583 96 56 1 18 111 7 102 5.12e-19 86.7
Msa0497420 AT3G29020.1 37.143 105 65 1 15 119 65 168 8.19e-19 84.0
Msa0497420 AT4G33450.1 36.066 122 71 3 4 124 13 128 9.22e-19 84.3
Msa0497420 AT1G08810.3 43.478 115 35 3 89 202 5 90 1.27e-18 82.8
Msa0497420 AT1G08810.2 43.478 115 35 3 89 202 5 90 1.27e-18 82.8
Msa0497420 AT3G29020.2 37.143 105 65 1 15 119 67 170 2.07e-18 84.3
Msa0497420 AT1G73410.1 36.607 112 70 1 11 122 2 112 4.36e-18 82.4
Msa0497420 AT5G39700.1 36.792 106 66 1 14 119 55 159 6.98e-18 80.5
Msa0497420 AT5G17800.1 37.143 105 65 1 15 119 93 196 7.64e-18 82.8
Msa0497420 AT1G73410.2 36.607 112 70 1 11 122 2 112 8.67e-18 80.5
Msa0497420 AT2G25230.1 39.252 107 64 1 9 115 20 125 8.10e-17 78.6
Msa0497420 AT1G14350.2 36.364 110 69 1 18 127 28 136 1.30e-16 80.5
Msa0497420 AT1G14350.1 36.364 110 69 1 18 127 28 136 1.30e-16 80.5
Msa0497420 AT2G02820.3 37.624 101 62 1 18 118 33 132 8.38e-16 77.0
Msa0497420 AT2G02820.1 37.624 101 62 1 18 118 33 132 1.91e-15 77.0
Msa0497420 AT2G02820.2 37.624 101 62 1 18 118 33 132 2.23e-15 76.6
Msa0497420 AT4G00540.2 35.135 111 68 2 13 120 101 210 3.71e-15 75.9
Msa0497420 AT4G00540.1 35.135 111 68 2 13 120 99 208 5.16e-15 75.5
Msa0497420 AT5G40430.1 33.333 129 78 4 8 132 47 171 3.58e-14 71.6
Msa0497420 AT5G59780.1 56.522 46 20 0 74 119 4 49 7.95e-12 63.2
Msa0497420 AT3G46130.2 57.778 45 19 0 75 119 5 49 1.17e-11 63.2
Msa0497420 AT4G25560.2 55.556 45 20 0 75 119 6 50 6.66e-11 61.6

Find 75 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCATTGTCTGTTCTTTC+TGG 0.086645 3_4:+30182448 None:intergenic
TTGAGAACAATCAGAATTTA+AGG 0.139704 3_4:+30182018 None:intergenic
TAAACCAAATACATGAATTT+TGG 0.144848 3_4:-30181686 Msa0497420:three_prime_UTR
TCATCCAAAATTCATGTATT+TGG 0.172835 3_4:+30181682 None:intergenic
AACTCAAGTCCCTCTGTTTA+TGG 0.215503 3_4:-30181918 Msa0497420:CDS
AAATTCAAGAAACTCCTTTA+TGG 0.223423 3_4:-30182134 Msa0497420:CDS
CCACCTTGCTGTGAGAAAAT+TGG 0.226124 3_4:-30183706 Msa0497420:CDS
CATGTATTTGGTTTAAATTT+TGG 0.236732 3_4:+30181694 None:intergenic
CAGCTGGTACGGTTGAAATT+TGG 0.240237 3_4:-30181574 Msa0497420:three_prime_UTR
TCCAGAGGAGGATATAATTT+TGG 0.242453 3_4:-30183662 Msa0497420:CDS
AACTCCTTTATGGTAGTTAC+AGG 0.269651 3_4:-30182124 Msa0497420:CDS
AACACTACTCCTCAAGTTAA+AGG 0.270661 3_4:-30182346 Msa0497420:CDS
GGGACTTGAGTTTCCTGATT+TGG 0.282041 3_4:+30181929 None:intergenic
CACCTTGCTGTGAGAAAATT+GGG 0.291064 3_4:-30183705 Msa0497420:CDS
AAGAACATGGACCTGGAAAT+TGG 0.305090 3_4:-30183627 Msa0497420:CDS
TCCCTCTGTTTATGGAGAAT+TGG 0.345740 3_4:-30181910 Msa0497420:CDS
GAATATAGGCATTCATTCAT+AGG 0.364638 3_4:+30181338 None:intergenic
GTATATATGTCAAAATGTTT+TGG 0.367887 3_4:+30181718 None:intergenic
TTTCATTATCATCACCTGTT+TGG 0.368087 3_4:+30182377 None:intergenic
ATAGAGAGCCTTAAGGAATA+TGG 0.368654 3_4:+30181372 None:intergenic
CTCCTCAAGTTAAAGGTCAA+TGG 0.383138 3_4:-30182339 Msa0497420:CDS
GCATTCATTCATAGGAGTTA+AGG 0.390414 3_4:+30181346 None:intergenic
GTCTGTTCTTTCTGGAAGAT+AGG 0.396054 3_4:+30182456 None:intergenic
GTAAAAGTTGCAGACTTAGA+TGG 0.400469 3_4:-30183222 Msa0497420:CDS
TGTTAGTGGCTCTTAGTCTA+TGG 0.402478 3_4:-30181313 Msa0497420:three_prime_UTR
GGAACTGATCTCCAATTTCC+AGG 0.410901 3_4:+30183616 None:intergenic
TTTCAGTGTTTGATGCATAA+GGG 0.421557 3_4:+30182215 None:intergenic
TCCTCAAGTTAAAGGTCAAT+GGG 0.424943 3_4:-30182338 Msa0497420:CDS
GAGCCACTAACATTGAATAT+AGG 0.443860 3_4:+30181324 None:intergenic
ATATGAAAGTAAGCCAAATC+AGG 0.445708 3_4:-30181942 Msa0497420:CDS
GTGGATGTCCATATTCCTTA+AGG 0.447445 3_4:-30181380 Msa0497420:three_prime_UTR
ATGCCTATATTCAATGTTAG+TGG 0.448865 3_4:-30181327 Msa0497420:three_prime_UTR
AGATCCTGTAACTACCATAA+AGG 0.458848 3_4:+30182120 None:intergenic
CTTAAGAAGATTAACCAAAC+AGG 0.466301 3_4:-30182391 Msa0497420:CDS
TATTTCCTAAAAGCGCTTGA+AGG 0.480930 3_4:+30183131 None:intergenic
AACTTGTCTATGTATATGTT+AGG 0.483335 3_4:-30183814 Msa0497420:five_prime_UTR
GAGAAAATTGGGGTTAAGAA+AGG 0.485693 3_4:-30183694 Msa0497420:CDS
AGATCAGTTCCCACCACTAC+AGG 0.486392 3_4:-30183604 Msa0497420:intron
ACCAAAATTATATCCTCCTC+TGG 0.493239 3_4:+30183661 None:intergenic
TAGCTAGATTACTCGAAAAG+TGG 0.506269 3_4:-30182189 Msa0497420:CDS
AAGGAACATAGAGAGCCTTA+AGG 0.512767 3_4:+30181365 None:intergenic
TTGGAGTTACCATACGGTTG+TGG 0.514021 3_4:-30181555 Msa0497420:three_prime_UTR
TTCTGGAAGATAGGAAGCTA+TGG 0.515015 3_4:+30182465 None:intergenic
ACTATTGGAATACACATTTG+AGG 0.515179 3_4:-30182420 Msa0497420:CDS
ATATAATATAAAGAACTTTG+AGG 0.516268 3_4:+30181529 None:intergenic
TCCCATTGACCTTTAACTTG+AGG 0.519748 3_4:+30182337 None:intergenic
GCTATACATACAAGTAATGA+TGG 0.529069 3_4:-30183734 Msa0497420:exon
CTTAGACCAGGTATCAAAAG+AGG 0.529980 3_4:-30183190 Msa0497420:CDS
TCAATGGAGGAAAATACAGC+AGG 0.530896 3_4:-30181839 Msa0497420:CDS
TGAAGAAAATGCAGCTGGTA+CGG 0.531832 3_4:-30181585 Msa0497420:three_prime_UTR
TGATTGTTCTCAATCTGTGT+CGG 0.532600 3_4:-30182008 Msa0497420:CDS
AGATCTAATGAATGTTTCAA+TGG 0.533276 3_4:-30181855 Msa0497420:CDS
TGAGCAGCCTCATCATCAAA+AGG 0.537344 3_4:+30181887 None:intergenic
TAAAATGAAGAAAATGCAGC+TGG 0.539811 3_4:-30181590 Msa0497420:three_prime_UTR
ACTTCAAACAGATATCCATA+TGG 0.546568 3_4:-30182308 Msa0497420:CDS
TTCCTAAAAGCGCTTGAAGG+TGG 0.547174 3_4:+30183134 None:intergenic
ATATCCTCCTCTGGAGTCCA+AGG 0.551517 3_4:+30183670 None:intergenic
TGAAATTTGGAGTTACCATA+CGG 0.553267 3_4:-30181561 Msa0497420:three_prime_UTR
TTCAGTGTTTGATGCATAAG+GGG 0.562754 3_4:+30182216 None:intergenic
TACATTCAAGAACATGGACC+TGG 0.568304 3_4:-30183634 Msa0497420:CDS
GTATCATACATTCAAGAACA+TGG 0.579079 3_4:-30183640 Msa0497420:CDS
TTGGGGTTAAGAAAGGACCT+TGG 0.585675 3_4:-30183687 Msa0497420:CDS
ACAGGATCTAGTTCTAGTGA+AGG 0.595194 3_4:-30182106 Msa0497420:CDS
TCTAATGAATGTTTCAATGG+AGG 0.595682 3_4:-30181852 Msa0497420:CDS
GCCAATTCTCCATAAACAGA+GGG 0.611162 3_4:+30181909 None:intergenic
TGAATAATATTATTATGATG+TGG 0.613015 3_4:-30181399 Msa0497420:three_prime_UTR
TTGAGGTCACCACAACCGTA+TGG 0.614433 3_4:+30181546 None:intergenic
GGATCTAGTTCTAGTGAAGG+AGG 0.624680 3_4:-30182103 Msa0497420:CDS
TGGACTAATTATCTTAGACC+AGG 0.626542 3_4:-30183202 Msa0497420:CDS
CAATGGAGGAAAATACAGCA+GGG 0.659954 3_4:-30181838 Msa0497420:CDS
GAAAGGACCTTGGACTCCAG+AGG 0.661042 3_4:-30183677 Msa0497420:CDS
GGCCAATTCTCCATAAACAG+AGG 0.673818 3_4:+30181908 None:intergenic
GGCAAAACAAGCTTTGTGTG+AGG 0.680287 3_4:-30182287 Msa0497420:CDS
AGGACCTTGGACTCCAGAGG+AGG 0.681544 3_4:-30183674 Msa0497420:CDS
ACCTTGCTGTGAGAAAATTG+GGG 0.707642 3_4:-30183704 Msa0497420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTTTTTTTTTTTTGA+GGG + chr3_4:30182379-30182398 None:intergenic 10.0%
!!! AATGTTTTTTTTTTTTTTTG+AGG + chr3_4:30182380-30182399 None:intergenic 10.0%
!!! TTTTTCTTTAAATTCATTAT+GGG + chr3_4:30182563-30182582 None:intergenic 10.0%
!!! TTTTTTCTTTAAATTCATTA+TGG + chr3_4:30182564-30182583 None:intergenic 10.0%
!! ATACAAAATATAAGTAAAAA+TGG + chr3_4:30183452-30183471 None:intergenic 10.0%
!!! ATATTTTGTATGATTTATAT+TGG - chr3_4:30183461-30183480 Msa0497420:intron 10.0%
!!! TTTATTGATTTTTCTTTTTC+AGG - chr3_4:30181849-30181868 Msa0497420:CDS 15.0%
!!! ATTCTCAAATTTTTCAATTT+TGG - chr3_4:30182068-30182087 Msa0497420:CDS 15.0%
!!! TAAAAAGTCAAATTTTTGTT+TGG + chr3_4:30182193-30182212 None:intergenic 15.0%
!! TTAATTCATGTGTAAAATTT+GGG + chr3_4:30182219-30182238 None:intergenic 15.0%
!! ATATAATATAAAGAACTTTG+AGG + chr3_4:30183582-30183601 None:intergenic 15.0%
!!! TTTTGTTTCAATGTTTTTAT+CGG + chr3_4:30183656-30183675 None:intergenic 15.0%
!! TGAATAATATTATTATGATG+TGG - chr3_4:30183709-30183728 Msa0497420:CDS 15.0%
!!! GTTTATGTTTTTGATTTTGT+AGG - chr3_4:30181823-30181842 Msa0497420:exon 20.0%
!! CAAGAATTTATAAGACAAAT+TGG + chr3_4:30182141-30182160 None:intergenic 20.0%
!! CTTAATTCATGTGTAAAATT+TGG + chr3_4:30182220-30182239 None:intergenic 20.0%
!!! ATTTTACACATGAATTAAGT+CGG - chr3_4:30182221-30182240 Msa0497420:CDS 20.0%
!! TCTTCGATGAAAATTAAATA+TGG - chr3_4:30182416-30182435 Msa0497420:CDS 20.0%
!!! TATCTATTGCTTTTAATTCT+TGG + chr3_4:30182523-30182542 None:intergenic 20.0%
!! AAATTCATTATGGGAAAAAA+TGG + chr3_4:30182554-30182573 None:intergenic 20.0%
!!! GTATATATGTCAAAATGTTT+TGG + chr3_4:30183393-30183412 None:intergenic 20.0%
!!! CATGTATTTGGTTTAAATTT+TGG + chr3_4:30183417-30183436 None:intergenic 20.0%
!!! TAAACCAAATACATGAATTT+TGG - chr3_4:30183422-30183441 Msa0497420:intron 20.0%
! AACTTGTCTATGTATATGTT+AGG - chr3_4:30181294-30181313 Msa0497420:three_prime_UTR 25.0%
! ACAAGTACAACATTTGTATA+TGG + chr3_4:30181779-30181798 None:intergenic 25.0%
! GTGAAATAAAAGATGAGATT+AGG + chr3_4:30182010-30182029 None:intergenic 25.0%
!!! AAAAGTATTGCAAAAGAATC+TGG + chr3_4:30182047-30182066 None:intergenic 25.0%
! AATTTATAAGACAAATTGGC+TGG + chr3_4:30182137-30182156 None:intergenic 25.0%
! TGACATGAATTTATGTAGAT+GGG - chr3_4:30182617-30182636 Msa0497420:intron 25.0%
! ACAATGACATCAAAAACTAT+TGG - chr3_4:30182673-30182692 Msa0497420:intron 25.0%
!!! GTTTGATTTTCAGCTAAAAT+AGG + chr3_4:30182870-30182889 None:intergenic 25.0%
! AAATTCAAGAAACTCCTTTA+TGG - chr3_4:30182974-30182993 Msa0497420:intron 25.0%
! TTGAGAACAATCAGAATTTA+AGG + chr3_4:30183093-30183112 None:intergenic 25.0%
! GGTTGAAGAAAAAAATTACT+TGG - chr3_4:30183121-30183140 Msa0497420:intron 25.0%
! AGAAAAAAATTACTTGGCAA+TGG - chr3_4:30183127-30183146 Msa0497420:intron 25.0%
! AGATCTAATGAATGTTTCAA+TGG - chr3_4:30183253-30183272 Msa0497420:intron 25.0%
! TCATCCAAAATTCATGTATT+TGG + chr3_4:30183429-30183448 None:intergenic 25.0%
!!! CTGCAATTAATGTTTTTTAG+TGG - chr3_4:30183607-30183626 Msa0497420:CDS 25.0%
GCTATACATACAAGTAATGA+TGG - chr3_4:30181374-30181393 Msa0497420:three_prime_UTR 30.0%
GTATCATACATTCAAGAACA+TGG - chr3_4:30181468-30181487 Msa0497420:three_prime_UTR 30.0%
!!! TGAATTGTTTTAACCTGTAG+TGG + chr3_4:30181520-30181539 None:intergenic 30.0%
! TTAGCCTATATTTGAAACCA+CGG + chr3_4:30181738-30181757 None:intergenic 30.0%
GCTAAATTGTTATCGATCTA+TGG - chr3_4:30181753-30181772 Msa0497420:three_prime_UTR 30.0%
ATACAAATGTTGTACTTGTG+TGG - chr3_4:30181780-30181799 Msa0497420:three_prime_UTR 30.0%
! AAATTACCTCTTTTGATACC+TGG + chr3_4:30181927-30181946 None:intergenic 30.0%
! TTCAGATTCAACAATTTTCC+TGG + chr3_4:30182273-30182292 None:intergenic 30.0%
CCTTACAAGCTAATATTGTA+CGG - chr3_4:30182474-30182493 Msa0497420:CDS 30.0%
CTTACAAGCTAATATTGTAC+GGG - chr3_4:30182475-30182494 Msa0497420:CDS 30.0%
TCATTATGGGAAAAAATGGT+GGG + chr3_4:30182550-30182569 None:intergenic 30.0%
TTCATTATGGGAAAAAATGG+TGG + chr3_4:30182551-30182570 None:intergenic 30.0%
CTGACATGAATTTATGTAGA+TGG - chr3_4:30182616-30182635 Msa0497420:intron 30.0%
ACTATTGGAATACACATTTG+AGG - chr3_4:30182688-30182707 Msa0497420:intron 30.0%
CTTAAGAAGATTAACCAAAC+AGG - chr3_4:30182717-30182736 Msa0497420:intron 30.0%
TTTCATTATCATCACCTGTT+TGG + chr3_4:30182734-30182753 None:intergenic 30.0%
ACTTCAAACAGATATCCATA+TGG - chr3_4:30182800-30182819 Msa0497420:intron 30.0%
! TTTTCAGCTAAAATAGGTGT+TGG + chr3_4:30182864-30182883 None:intergenic 30.0%
TTTCAGTGTTTGATGCATAA+GGG + chr3_4:30182896-30182915 None:intergenic 30.0%
! TTTTCAGTGTTTGATGCATA+AGG + chr3_4:30182897-30182916 None:intergenic 30.0%
GATGAAAAAACCCGAAAATT+CGG - chr3_4:30182941-30182960 Msa0497420:intron 30.0%
ATATGAAAGTAAGCCAAATC+AGG - chr3_4:30183166-30183185 Msa0497420:CDS 30.0%
TCTAATGAATGTTTCAATGG+AGG - chr3_4:30183256-30183275 Msa0497420:intron 30.0%
TAAAATGAAGAAAATGCAGC+TGG - chr3_4:30183518-30183537 Msa0497420:intron 30.0%
! TGAAATTTGGAGTTACCATA+CGG - chr3_4:30183547-30183566 Msa0497420:intron 30.0%
GAATATAGGCATTCATTCAT+AGG + chr3_4:30183773-30183792 None:intergenic 30.0%
ATGCCTATATTCAATGTTAG+TGG - chr3_4:30183781-30183800 Msa0497420:five_prime_UTR 30.0%
GAGAAAATTGGGGTTAAGAA+AGG - chr3_4:30181414-30181433 Msa0497420:three_prime_UTR 35.0%
! TCCAGAGGAGGATATAATTT+TGG - chr3_4:30181446-30181465 Msa0497420:three_prime_UTR 35.0%
ACCAAAATTATATCCTCCTC+TGG + chr3_4:30181450-30181469 None:intergenic 35.0%
!!! TTGTTTTAACCTGTAGTGGT+GGG + chr3_4:30181516-30181535 None:intergenic 35.0%
!!! ATTGTTTTAACCTGTAGTGG+TGG + chr3_4:30181517-30181536 None:intergenic 35.0%
!! ACAAAGCTGAAGCTATTTCT+TGG + chr3_4:30181619-30181638 None:intergenic 35.0%
TCTACCGTGGTTTCAAATAT+AGG - chr3_4:30181731-30181750 Msa0497420:three_prime_UTR 35.0%
GTAAAAGTTGCAGACTTAGA+TGG - chr3_4:30181886-30181905 Msa0497420:CDS 35.0%
TGGACTAATTATCTTAGACC+AGG - chr3_4:30181906-30181925 Msa0497420:CDS 35.0%
!! TATTTCCTAAAAGCGCTTGA+AGG + chr3_4:30181980-30181999 None:intergenic 35.0%
!! TTCAAGCGCTTTTAGGAAAT+AGG - chr3_4:30181979-30181998 Msa0497420:CDS 35.0%
GAATCTGGAAATAGAAGAGA+AGG + chr3_4:30182032-30182051 None:intergenic 35.0%
! GATTCAACAATTTTCCTGGA+AGG + chr3_4:30182269-30182288 None:intergenic 35.0%
! ACTACTAAGATCGTCAGTTT+TGG - chr3_4:30182322-30182341 Msa0497420:CDS 35.0%
!!! GTCAGTTTTGGATATTGTTG+CGG - chr3_4:30182334-30182353 Msa0497420:CDS 35.0%
!! CCGTACAATATTAGCTTGTA+AGG + chr3_4:30182477-30182496 None:intergenic 35.0%
CATTATGGGAAAAAATGGTG+GGG + chr3_4:30182549-30182568 None:intergenic 35.0%
ATGTCATTGTCTGTTCTTTC+TGG + chr3_4:30182663-30182682 None:intergenic 35.0%
AACACTACTCCTCAAGTTAA+AGG - chr3_4:30182762-30182781 Msa0497420:intron 35.0%
TCCTCAAGTTAAAGGTCAAT+GGG - chr3_4:30182770-30182789 Msa0497420:intron 35.0%
!!! ACAAAGCTTGTTTTGCCATA+TGG + chr3_4:30182818-30182837 None:intergenic 35.0%
TTCAGTGTTTGATGCATAAG+GGG + chr3_4:30182895-30182914 None:intergenic 35.0%
TAGCTAGATTACTCGAAAAG+TGG - chr3_4:30182919-30182938 Msa0497420:intron 35.0%
! TGTTGTGTCATCCGAATTTT+CGG + chr3_4:30182955-30182974 None:intergenic 35.0%
AACTCCTTTATGGTAGTTAC+AGG - chr3_4:30182984-30183003 Msa0497420:intron 35.0%
AGATCCTGTAACTACCATAA+AGG + chr3_4:30182991-30183010 None:intergenic 35.0%
TGATTGTTCTCAATCTGTGT+CGG - chr3_4:30183100-30183119 Msa0497420:intron 35.0%
ATAGAGAGCCTTAAGGAATA+TGG + chr3_4:30183739-30183758 None:intergenic 35.0%
GCATTCATTCATAGGAGTTA+AGG + chr3_4:30183765-30183784 None:intergenic 35.0%
GAGCCACTAACATTGAATAT+AGG + chr3_4:30183787-30183806 None:intergenic 35.0%
! CACCTTGCTGTGAGAAAATT+GGG - chr3_4:30181403-30181422 Msa0497420:three_prime_UTR 40.0%
! ACCTTGCTGTGAGAAAATTG+GGG - chr3_4:30181404-30181423 Msa0497420:three_prime_UTR 40.0%
TACATTCAAGAACATGGACC+TGG - chr3_4:30181474-30181493 Msa0497420:three_prime_UTR 40.0%
AAGAACATGGACCTGGAAAT+TGG - chr3_4:30181481-30181500 Msa0497420:three_prime_UTR 40.0%
TTATAGCTTCTACTCTACCG+TGG - chr3_4:30181718-30181737 Msa0497420:three_prime_UTR 40.0%
CTTAGACCAGGTATCAAAAG+AGG - chr3_4:30181918-30181937 Msa0497420:CDS 40.0%
! CAACAATTTTCCTGGAAGGA+CGG + chr3_4:30182265-30182284 None:intergenic 40.0%
! TTCTGGAAGATAGGAAGCTA+TGG + chr3_4:30182646-30182665 None:intergenic 40.0%
! GTCTGTTCTTTCTGGAAGAT+AGG + chr3_4:30182655-30182674 None:intergenic 40.0%
CTCCTCAAGTTAAAGGTCAA+TGG - chr3_4:30182769-30182788 Msa0497420:intron 40.0%
!! TCCCATTGACCTTTAACTTG+AGG + chr3_4:30182774-30182793 None:intergenic 40.0%
! GTTGTGTCATCCGAATTTTC+GGG + chr3_4:30182954-30182973 None:intergenic 40.0%
!! ACAGGATCTAGTTCTAGTGA+AGG - chr3_4:30183002-30183021 Msa0497420:intron 40.0%
AACTCAAGTCCCTCTGTTTA+TGG - chr3_4:30183190-30183209 Msa0497420:CDS 40.0%
TCCCTCTGTTTATGGAGAAT+TGG - chr3_4:30183198-30183217 Msa0497420:CDS 40.0%
GCCAATTCTCCATAAACAGA+GGG + chr3_4:30183202-30183221 None:intergenic 40.0%
!!! GAATTGGCCTTTTGATGATG+AGG - chr3_4:30183214-30183233 Msa0497420:CDS 40.0%
TCAATGGAGGAAAATACAGC+AGG - chr3_4:30183269-30183288 Msa0497420:intron 40.0%
CAATGGAGGAAAATACAGCA+GGG - chr3_4:30183270-30183289 Msa0497420:intron 40.0%
TGAAGAAAATGCAGCTGGTA+CGG - chr3_4:30183523-30183542 Msa0497420:intron 40.0%
GTGGATGTCCATATTCCTTA+AGG - chr3_4:30183728-30183747 Msa0497420:exon 40.0%
AAGGAACATAGAGAGCCTTA+AGG + chr3_4:30183746-30183765 None:intergenic 40.0%
TGTTAGTGGCTCTTAGTCTA+TGG - chr3_4:30183795-30183814 Msa0497420:five_prime_UTR 40.0%
! CCAATTTTCTCACAGCAAGG+TGG + chr3_4:30181405-30181424 None:intergenic 45.0%
! CCACCTTGCTGTGAGAAAAT+TGG - chr3_4:30181402-30181421 Msa0497420:three_prime_UTR 45.0%
! ACCCCAATTTTCTCACAGCA+AGG + chr3_4:30181408-30181427 None:intergenic 45.0%
TTGGGGTTAAGAAAGGACCT+TGG - chr3_4:30181421-30181440 Msa0497420:three_prime_UTR 45.0%
GGAACTGATCTCCAATTTCC+AGG + chr3_4:30181495-30181514 None:intergenic 45.0%
! ATCCACCTTCAAGCGCTTTT+AGG - chr3_4:30181972-30181991 Msa0497420:CDS 45.0%
!! TTCCTAAAAGCGCTTGAAGG+TGG + chr3_4:30181977-30181996 None:intergenic 45.0%
! GGCAAAACAAGCTTTGTGTG+AGG - chr3_4:30182821-30182840 Msa0497420:intron 45.0%
!! GGATCTAGTTCTAGTGAAGG+AGG - chr3_4:30183005-30183024 Msa0497420:intron 45.0%
GGGACTTGAGTTTCCTGATT+TGG + chr3_4:30183182-30183201 None:intergenic 45.0%
GGCCAATTCTCCATAAACAG+AGG + chr3_4:30183203-30183222 None:intergenic 45.0%
TGAGCAGCCTCATCATCAAA+AGG + chr3_4:30183224-30183243 None:intergenic 45.0%
CAGCTGGTACGGTTGAAATT+TGG - chr3_4:30183534-30183553 Msa0497420:intron 45.0%
TTGGAGTTACCATACGGTTG+TGG - chr3_4:30183553-30183572 Msa0497420:intron 45.0%
!! ATATCCTCCTCTGGAGTCCA+AGG + chr3_4:30181441-30181460 None:intergenic 50.0%
AGATCAGTTCCCACCACTAC+AGG - chr3_4:30181504-30181523 Msa0497420:three_prime_UTR 50.0%
TTGAGGTCACCACAACCGTA+TGG + chr3_4:30183565-30183584 None:intergenic 50.0%
GAAAGGACCTTGGACTCCAG+AGG - chr3_4:30181431-30181450 Msa0497420:three_prime_UTR 55.0%
GCAAACTCTACCGTCCTTCC+AGG - chr3_4:30182252-30182271 Msa0497420:CDS 55.0%
AGGACCTTGGACTCCAGAGG+AGG - chr3_4:30181434-30181453 Msa0497420:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 30181290 30183840 30181290 ID=Msa0497420;Name=Msa0497420
chr3_4 mRNA 30181290 30183840 30181290 ID=Msa0497420-mRNA-1;Parent=Msa0497420;Name=Msa0497420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=100|1|1|1|1|1|3|539|310
chr3_4 exon 30181290 30182495 30181290 ID=Msa0497420-mRNA-1:exon:6830;Parent=Msa0497420-mRNA-1
chr3_4 exon 30183130 30183259 30183130 ID=Msa0497420-mRNA-1:exon:6829;Parent=Msa0497420-mRNA-1
chr3_4 exon 30183605 30183840 30183605 ID=Msa0497420-mRNA-1:exon:6828;Parent=Msa0497420-mRNA-1
chr3_4 five_prime_UTR 30183741 30183840 30183741 ID=Msa0497420-mRNA-1:five_prime_utr;Parent=Msa0497420-mRNA-1
chr3_4 CDS 30183605 30183740 30183605 ID=Msa0497420-mRNA-1:cds;Parent=Msa0497420-mRNA-1
chr3_4 CDS 30183130 30183259 30183130 ID=Msa0497420-mRNA-1:cds;Parent=Msa0497420-mRNA-1
chr3_4 CDS 30181829 30182495 30181829 ID=Msa0497420-mRNA-1:cds;Parent=Msa0497420-mRNA-1
chr3_4 three_prime_UTR 30181290 30181828 30181290 ID=Msa0497420-mRNA-1:three_prime_utr;Parent=Msa0497420-mRNA-1
Gene Sequence

>Msa0497420

ATGATGGTGAGACCACCTTGCTGTGAGAAAATTGGGGTTAAGAAAGGACCTTGGACTCCAGAGGAGGATATAATTTTGGTATCATACATTCAAGAACATGGACCTGGAAATTGGAGATCAGTTCCCACCACTACAGGTTTGATGAGATGCAGTAAAAGTTGCAGACTTAGATGGACTAATTATCTTAGACCAGGTATCAAAAGAGGTAATTTCAATGATCATGAAGAAAAAATGATAATCCACCTTCAAGCGCTTTTAGGAAATAGATGGGCTGCCATAGCTTCCTATCTTCCAGAAAGAACAGACAATGACATCAAAAACTATTGGAATACACATTTGAGGAAAAAGCTTAAGAAGATTAACCAAACAGGTGATGATAATGAAATAGAAGAAAACACTACTCCTCAAGTTAAAGGTCAATGGGAGAGAAGACTTCAAACAGATATCCATATGGCAAAACAAGCTTTGTGTGAGGCACTTTCTCTTGACAAACCAACACCTATTTTAGCTGAAAATCAAACTTCCCCTTATGCATCAAACACTGAAAACATAGCTAGATTACTCGAAAAGTGGATGAAAAAACCCGAAAATTCGGATGACACAACAAATTCAAGAAACTCCTTTATGGTAGTTACAGGATCTAGTTCTAGTGAAGGAGGACAGAATACTATAGCATGCAAACAAAAAGATCAAGCATTTGATTCTTTGTTGAGTTTTAATTCCTTAAATTCTGATTGTTCTCAATCTGTGTCGGTTGAAGAAAAAAATTACTTGGCAATGGATTCTTGCTTCTTTCAATATGAAAGTAAGCCAAATCAGGAAACTCAAGTCCCTCTGTTTATGGAGAATTGGCCTTTTGATGATGAGGCTGCTCAGTGCAATGAAGATCTAATGAATGTTTCAATGGAGGAAAATACAGCAGGGTTGTTTTAG
Protein sequence

>Msa0497420

MMVRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTTTGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLRKKLKKINQTGDDNEIEENTTPQVKGQWERRLQTDIHMAKQALCEALSLDKPTPILAENQTSPYASNTENIARLLEKWMKKPENSDDTTNSRNSFMVVTGSSSSEGGQNTIACKQKDQAFDSLLSFNSLNSDCSQSVSVEEKNYLAMDSCFFQYESKPNQETQVPLFMENWPFDDEAAQCNEDLMNVSMEENTAGLF*