AlfalfaGEDB | Msa0410950

M. sativa cultivar zhongmu-4 / Msa0410950

KEGG: K00475
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009812 GO:0009813 GO:0010224 GO:0016491 GO:0016705 GO:0016706 GO:0045486 GO:0050896 GO:0051213 GO:0055114 GO:0071704 GO:1901576
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410950	XP_013460013.1	86.826	334	36	3	4	330	1	333	0.0	590

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410950	sp\|Q07353\|FL3H_PETHY	70.821	329	88	3	9	330	8	335	4.94e-173	487

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410950	A0A072UW43	86.826	334	36	3	4	330	1	333	0.0	590

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0197230	Msa0410950	0.801905	7.220475e-49	-8.615850e-47
Msa0363310	Msa0410950	0.861286	1.141275e-63	-8.615850e-47
Msa0410950	Msa0428670	0.801364	9.325658e-49	-8.615850e-47
Msa0410950	Msa0455290	0.824379	8.334296e-54	-8.615850e-47
Msa0410950	Msa0465950	0.810754	9.851354e-51	-8.615850e-47
Msa0410950	Msa0503590	0.880925	3.672055e-70	-8.615850e-47
Msa0410950	Msa1008490	0.807534	4.822250e-50	-8.615850e-47
Msa0410950	Msa1083410	0.812445	4.225664e-51	-8.615850e-47
Msa0410950	Msa1098560	0.807198	5.683734e-50	-8.615850e-47
Msa0410950	Msa1228210	0.802767	4.797899e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410950	MtrunA17_Chr3g0102041	86.826	334	36	3	4	330	1	333	0.0	590
Msa0410950	MtrunA17_Chr8g0371931	75.749	334	73	3	4	330	1	333	0.0	527
Msa0410950	MtrunA17_Chr8g0371921	75.449	334	74	3	4	330	1	333	0.0	524
Msa0410950	MtrunA17_Chr5g0405411	69.486	331	93	3	4	327	1	330	2.03e-170	478
Msa0410950	MtrunA17_Chr8g0345831	37.261	314	171	8	1	300	1	302	1.22e-60	197
Msa0410950	MtrunA17_Chr3g0109041	34.014	294	175	6	23	302	25	313	2.00e-56	187
Msa0410950	MtrunA17_Chr3g0128001	35.692	325	188	10	19	332	15	329	2.59e-55	183
Msa0410950	MtrunA17_Chr7g0239121	33.628	339	208	9	6	332	12	345	7.96e-55	182
Msa0410950	MtrunA17_Chr7g0239111	32.544	338	212	10	6	332	16	348	1.09e-52	177
Msa0410950	MtrunA17_Chr3g0113641	34.169	319	195	8	16	322	23	338	1.10e-52	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0410950	AT3G51240.1	70.659	334	89	4	4	330	1	332	5.05e-172	482
Msa0410950	AT3G51240.2	72.581	248	61	2	90	330	1	248	1.29e-130	374
Msa0410950	AT4G10490.1	34.756	328	192	8	7	323	12	328	1.19e-58	192
Msa0410950	AT4G10500.1	35.172	290	175	6	19	300	20	304	9.92e-58	190
Msa0410950	AT4G16330.2	36.996	273	151	7	42	302	66	329	6.47e-57	189
Msa0410950	AT5G24530.1	35.030	334	189	11	15	332	11	332	2.09e-56	186
Msa0410950	AT2G38240.1	36.213	301	166	11	18	302	22	312	1.47e-49	169
Msa0410950	AT3G11180.1	34.333	300	176	8	18	302	66	359	7.40e-49	169
Msa0410950	AT3G11180.2	34.333	300	176	8	18	302	66	359	8.15e-49	168
Msa0410950	AT5G05600.1	34.314	306	170	9	17	302	36	330	8.19e-49	167

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Find 97 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCAGAGTGATTGTGCC+AGG	0.538136	3_2:-52917767	None:intergenic
AACCGAAGCTTCTCTTCTAG+TGG	0.604976	3_2:-52916255	None:intergenic
AACTGATTGTAAGAACCTTT+TGG	0.308496	3_2:-52916045	None:intergenic
AAGAATCTCATTCAAAGGTT+TGG	0.356999	3_2:-52919390	None:intergenic
AAGAGCTGATCACAGGGCAG+TGG	0.603019	3_2:+52919164	Msa0410950:CDS
AAGCTTCGGTTTGACATGTC+TGG	0.449959	3_2:+52916267	Msa0410950:CDS
AATAATCTCTTTCTCTAATT+GGG	0.336585	3_2:-52917517	None:intergenic
AATACTATTTCAGTTTGGTT+TGG	0.412480	3_2:-52919769	None:intergenic
ACAAAAGCACCTTCAACTGG+AGG	0.663056	3_2:-52917851	None:intergenic
ACAACAAAAGCACCTTCAAC+TGG	0.430334	3_2:-52917854	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAGATGAATCAGTTAGGT+TGG	+	chr3_2:52917152-52917171	Msa0410950:intron	30.0%
AAAGATGAATCAGTTAGGTT+GGG	+	chr3_2:52917153-52917172	Msa0410950:intron	30.0%
CACCCAAACTACTTATATAT+TGG	+	chr3_2:52917432-52917451	Msa0410950:intron	30.0%
ATATTGGATCTCCTATTTAC+AGG	+	chr3_2:52917448-52917467	Msa0410950:intron	30.0%
TATTGGATCTCCTATTTACA+GGG	+	chr3_2:52917449-52917468	Msa0410950:intron	30.0%
TTTAACATGCAAGTTGTTTG+AGG	+	chr3_2:52917607-52917626	Msa0410950:CDS	30.0%
TGATATGGTTCAAAAGATTG+TGG	+	chr3_2:52917682-52917701	Msa0410950:CDS	30.0%
TTGAGGTCATAATGTAGTTA+AGG	+	chr3_2:52918061-52918080	Msa0410950:intron	30.0%
AAAACTTAATTCACGAGCTA+TGG	-	chr3_2:52918830-52918849	None:intergenic	30.0%
TGCATGCAGTATTTAAGTAA+TGG	+	chr3_2:52919132-52919151	Msa0410950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	52915874	52919796	52915874	ID=Msa0410950;Name=Msa0410950
chr3_2	mRNA	52915874	52919796	52915874	ID=Msa0410950-mRNA-1;Parent=Msa0410950;Name=Msa0410950-mRNA-1;_AED=0.10;_eAED=0.11;_QI=81\|0.33\|0.5\|1\|1\|1\|4\|440\|332
chr3_2	exon	52915874	52916314	52915874	ID=Msa0410950-mRNA-1:exon:10513;Parent=Msa0410950-mRNA-1
chr3_2	exon	52917470	52917863	52917470	ID=Msa0410950-mRNA-1:exon:10514;Parent=Msa0410950-mRNA-1
chr3_2	exon	52918613	52918641	52918613	ID=Msa0410950-mRNA-1:exon:10515;Parent=Msa0410950-mRNA-1
chr3_2	exon	52919141	52919796	52919141	ID=Msa0410950-mRNA-1:exon:10516;Parent=Msa0410950-mRNA-1
chr3_2	five_prime_UTR	52915874	52915954	52915874	ID=Msa0410950-mRNA-1:five_prime_utr;Parent=Msa0410950-mRNA-1
chr3_2	CDS	52915955	52916314	52915955	ID=Msa0410950-mRNA-1:cds;Parent=Msa0410950-mRNA-1
chr3_2	CDS	52917470	52917863	52917470	ID=Msa0410950-mRNA-1:cds;Parent=Msa0410950-mRNA-1
chr3_2	CDS	52918613	52918641	52918613	ID=Msa0410950-mRNA-1:cds;Parent=Msa0410950-mRNA-1
chr3_2	CDS	52919141	52919356	52919141	ID=Msa0410950-mRNA-1:cds;Parent=Msa0410950-mRNA-1
chr3_2	three_prime_UTR	52919357	52919796	52919357	ID=Msa0410950-mRNA-1:three_prime_utr;Parent=Msa0410950-mRNA-1

Gene Sequence

>Msa0410950

ATGCAAACAATGGCACCAGCGAAAACTCTCGATTATTTACCTCAGAAAAACACACTCGAGTCTAGTTTCATCAGGGACGAAAGCACTCGTCCAAAAGGTTCTTACAATCAGTTCAGCAATGATGAGATTCCAATTATTTCTCTCGCCGGAATCGACGACGTTGGCGGCCGCAGAGTAGAAATTTGCGACCAGATTGCAAAAGCTTGCGAGAATTGGGGTATCTTCCAAGTTGTTGATCATGGTGTGGATCAAAAGCTCATTTATGAGATGACAAGTTTTTCTAAAGGGTTCTTTGATTTGCCACTAGAAGAGAAGCTTCGGTTTGACATGTCTGGTGGTAAAAAGGGTGGCTTCGTAGTAGGAGAAGAGATGAATGATTGGAGAGAACGAATGCTATACTTTTCATACCCAATTAGAGAAAGAGATTATTCAAGGTGGCCAGACAAGCCAGAAGGATGGAAAGAGGTAACAGAAGAATACAGTGAGAAGCTAATGAGTTTAACATGCAAGTTGTTTGAGGTGTTATCTGAGGCTATGGGGTTAGAAAAAGAAGCTTTGACAAAAGCATGTGTTGATATGGTTCAAAAGATTGTGGTAAATTACTACCCAAAATGCCCTCAACCTGACCTTACTCTTGGCCTGAAACGACACACTGATCCTGGCACAATCACTCTGGTGTTTCAAGAACAAGTGGGTGGCCTTCAAGTTACTAGAGATGAGGGTGAGACGTGGATCACTGTTCCTCCAGTTGAAGGTCCTGAATTATTATTTTTTGACAAAAATTATTTAAGTAATGGACGGTTCAAAAGAGCTGATCACAGGGCAGTGGTGAATTCAAGCTACAGCCGTTTATCCGTAGCAACATTCCAATATCCAGCAACAGATGCAATTGTGTACCCTTTGAAGGTCAGAGAGGGAGAGAAATATGTGATGGAGGAACACCTCACTTTTGCTGAAATATACAGAAGGAACATGAGCAATTACCTTGAGCAAAAGTGA

Protein sequence

>Msa0410950

MQTMAPAKTLDYLPQKNTLESSFIRDESTRPKGSYNQFSNDEIPIISLAGIDDVGGRRVEICDQIAKACENWGIFQVVDHGVDQKLIYEMTSFSKGFFDLPLEEKLRFDMSGGKKGGFVVGEEMNDWRERMLYFSYPIRERDYSRWPDKPEGWKEVTEEYSEKLMSLTCKLFEVLSEAMGLEKEALTKACVDMVQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLVFQEQVGGLQVTRDEGETWITVPPVEGPELLFFDKNYLSNGRFKRADHRAVVNSSYSRLSVATFQYPATDAIVYPLKVREGEKYVMEEHLTFAEIYRRNMSNYLEQK*