AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428670 MtrunA17_Chr3g0132091 96.023 352 12 2 26 376 1 351 0.0 695
Msa0428670 MtrunA17_Chr8g0386271 60.147 409 111 21 1 376 1 390 2.34e-140 404
Msa0428670 MtrunA17_Chr7g0224821 34.080 402 204 13 1 376 1 367 4.69e-56 187
Msa0428670 MtrunA17_Chr4g0061651 55.474 137 41 4 43 172 75 198 4.97e-39 145
Msa0428670 MtrunA17_Chr2g0308321 51.034 145 66 2 43 187 122 261 9.89e-38 142
Msa0428670 MtrunA17_Chr5g0420051 45.752 153 79 1 43 195 131 279 1.80e-37 140
Msa0428670 MtrunA17_Chr3g0122411 50.000 126 61 2 83 206 151 276 7.76e-37 138
Msa0428670 MtrunA17_Chr7g0231911 58.696 92 38 0 87 178 139 230 1.25e-33 127
Msa0428670 MtrunA17_Chr4g0046991 57.000 100 40 1 71 170 50 146 8.88e-32 117
Msa0428670 MtrunA17_Chr8g0360361 64.103 78 28 0 97 174 65 142 7.12e-31 115
Msa0428670 MtrunA17_Chr7g0258471 62.500 80 30 0 97 176 142 221 8.97e-31 121
Msa0428670 MtrunA17_Chr1g0162871 42.442 172 88 4 97 264 104 268 2.72e-30 122
Msa0428670 MtrunA17_Chr8g0334671 68.421 76 24 0 97 172 187 262 5.40e-30 117
Msa0428670 MtrunA17_Chr2g0282521 61.905 84 32 0 91 174 58 141 8.37e-30 112
Msa0428670 MtrunA17_Chr1g0194121 55.000 100 43 1 83 182 133 230 1.70e-29 120
Msa0428670 MtrunA17_Chr2g0302791 59.302 86 35 0 97 182 139 224 1.76e-29 120
Msa0428670 MtrunA17_Chr7g0270541 50.450 111 52 2 72 182 121 228 1.22e-28 117
Msa0428670 MtrunA17_Chr8g0377421 46.429 112 58 1 97 206 132 243 5.86e-27 108
Msa0428670 MtrunA17_Chr8g0377401 58.904 73 30 0 97 169 162 234 1.03e-22 95.9
Msa0428670 MtrunA17_Chr8g0366211 52.747 91 43 0 47 137 39 129 2.33e-18 80.5
Msa0428670 MtrunA17_Chr2g0286661 50.000 74 37 0 97 170 103 176 3.79e-18 86.3
Msa0428670 MtrunA17_Chr2g0317041 59.574 47 19 0 97 143 99 145 1.82e-14 70.5
Msa0428670 MtrunA17_Chr1g0175031 61.702 47 18 0 97 143 74 120 3.19e-14 69.3
Msa0428670 MtrunA17_Chr8g0377431 53.571 56 26 0 97 152 151 206 4.81e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428670 AT5G50570.1 39.702 403 172 17 1 376 1 359 8.79e-68 218
Msa0428670 AT5G50570.2 39.702 403 172 17 1 376 1 359 8.79e-68 218
Msa0428670 AT5G50670.1 39.702 403 172 17 1 376 1 359 8.79e-68 218
Msa0428670 AT5G50670.2 39.702 403 172 17 1 376 1 359 8.79e-68 218
Msa0428670 AT1G27370.6 53.636 110 48 2 64 172 144 251 6.82e-33 126
Msa0428670 AT1G27370.1 53.636 110 48 2 64 172 144 251 1.02e-32 126
Msa0428670 AT1G27370.5 53.636 110 48 2 64 172 144 251 1.02e-32 126
Msa0428670 AT1G27370.3 53.636 110 48 2 64 172 144 251 1.02e-32 126
Msa0428670 AT1G27370.2 53.636 110 48 2 64 172 144 251 1.02e-32 126
Msa0428670 AT1G27370.4 53.636 110 48 2 64 172 144 251 1.02e-32 126
Msa0428670 AT1G27370.7 53.636 110 48 2 64 172 144 251 1.02e-32 126
Msa0428670 AT1G69170.1 38.095 231 124 4 76 302 100 315 1.05e-32 127
Msa0428670 AT1G27360.2 54.630 108 44 2 66 172 147 250 1.36e-32 126
Msa0428670 AT1G27360.1 54.630 108 44 2 66 172 147 250 1.36e-32 126
Msa0428670 AT1G27360.3 54.630 108 44 2 66 172 147 250 1.36e-32 126
Msa0428670 AT1G27360.4 54.630 108 44 2 66 172 147 250 1.36e-32 126
Msa0428670 AT2G42200.1 62.963 81 30 0 97 177 74 154 7.38e-32 124
Msa0428670 AT1G76580.2 67.901 81 26 0 97 177 114 194 1.08e-31 127
Msa0428670 AT2G47070.1 67.089 79 26 0 97 175 106 184 1.08e-31 127
Msa0428670 AT1G76580.3 67.901 81 26 0 97 177 114 194 1.13e-31 127
Msa0428670 AT5G43270.3 63.750 80 29 0 94 173 166 245 1.45e-31 124
Msa0428670 AT5G43270.1 63.750 80 29 0 94 173 166 245 1.45e-31 124
Msa0428670 AT5G43270.2 63.750 80 29 0 94 173 166 245 1.45e-31 124
Msa0428670 AT1G76580.1 67.901 81 26 0 97 177 114 194 1.62e-31 126
Msa0428670 AT3G60030.1 63.855 83 30 0 94 176 124 206 1.91e-31 126
Msa0428670 AT3G57920.1 56.701 97 42 0 77 173 39 135 4.33e-31 121
Msa0428670 AT2G33810.1 64.865 74 26 0 97 170 54 127 2.20e-30 113
Msa0428670 AT1G02065.1 64.286 84 30 0 87 170 178 261 2.39e-30 119
Msa0428670 AT1G53160.3 55.670 97 42 1 97 193 54 149 2.98e-29 111
Msa0428670 AT1G53160.2 55.670 97 42 1 97 193 54 149 5.72e-29 111
Msa0428670 AT1G53160.1 55.670 97 42 1 97 193 54 149 5.72e-29 111
Msa0428670 AT1G20980.1 64.634 82 28 1 97 177 120 201 6.64e-29 119
Msa0428670 AT3G15270.1 60.811 74 29 0 97 170 63 136 2.39e-27 107
Msa0428670 AT2G47070.2 67.273 55 18 0 121 175 1 55 9.02e-19 88.6
Msa0428670 AT1G02065.2 60.345 58 23 0 87 144 178 235 1.52e-17 81.6
Msa0428670 AT5G18830.2 48.684 76 38 1 97 171 138 213 8.40e-17 82.8
Msa0428670 AT5G18830.1 48.684 76 38 1 97 171 138 213 9.87e-17 82.4
Msa0428670 AT5G18830.3 48.684 76 38 1 97 171 138 213 1.04e-16 82.4

Find 134 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGTAGGTGTTGCAATTT+TGG 0.158488 3_2:-79622916 None:intergenic
ACCAACCTTACCTTGGTAAT+TGG 0.160259 3_2:-79624317 None:intergenic
AAAGCACCTTCTTGGGATTT+GGG 0.187536 3_2:+79622723 Msa0428670:CDS
GTTGGCAGAACCTTTGTTTA+AGG 0.193299 3_2:-79623103 None:intergenic
TAGGCAACAAAATTCATAAA+TGG 0.197478 3_2:+79626453 Msa0428670:three_prime_UTR
GAAAGCACCTTCTTGGGATT+TGG 0.238938 3_2:+79622722 Msa0428670:CDS
CATACATTACTTTCTCAATA+AGG 0.253963 3_2:-79626393 None:intergenic
GGAAGAACAATCCCTATATT+TGG 0.255504 3_2:+79622091 Msa0428670:five_prime_UTR
CTTCAAAGTCCTTCTTTGTT+TGG 0.277632 3_2:-79622630 None:intergenic
ATTTGATTCAAACCATTATC+AGG 0.300493 3_2:-79626092 None:intergenic
GGAATTTGAAAGCACCTTCT+TGG 0.318651 3_2:+79622715 Msa0428670:CDS
TCTTCCATTGTTTCTATGTT+GGG 0.318840 3_2:-79622768 None:intergenic
GCAACACCTACTTCTTCTTC+AGG 0.325475 3_2:+79622924 Msa0428670:CDS
CCACAATTTCATTTCATGTA+TGG 0.336973 3_2:+79622225 Msa0428670:five_prime_UTR
ATGGAAGAATCAAACAGATT+TGG 0.341310 3_2:+79622783 Msa0428670:CDS
GCCAAACCACACCTCTTCTT+AGG 0.344595 3_2:+79625976 Msa0428670:CDS
TGATCACTCTCACTCCCATT+TGG 0.346060 3_2:-79626209 None:intergenic
TTCATGTAGGTTTCATTCGC+TGG 0.354772 3_2:+79624183 Msa0428670:intron
TTCTTCCATTGTTTCTATGT+TGG 0.356796 3_2:-79622769 None:intergenic
GATCAGAGGAACAGTGTTAA+GGG 0.376528 3_2:-79622181 None:intergenic
TCTCAAGCTACTATACATAC+TGG 0.392962 3_2:+79622059 Msa0428670:five_prime_UTR
GATCACTCTCACTCCCATTT+GGG 0.397635 3_2:-79626208 None:intergenic
CTCAACTATTTCCCTATCAA+TGG 0.401247 3_2:+79626285 Msa0428670:CDS
GAATTTGAAAGCACCTTCTT+GGG 0.406706 3_2:+79622716 Msa0428670:CDS
ATTTGAAGCTTGGTCAGGTT+GGG 0.406990 3_2:+79622838 Msa0428670:CDS
AGATCAGAGGAACAGTGTTA+AGG 0.407131 3_2:-79622182 None:intergenic
AATTGTGGATCACAGGATAA+TGG 0.412890 3_2:-79622210 None:intergenic
GAACTTGCTGGTGTTGGTTG+TGG 0.413226 3_2:-79625845 None:intergenic
CAGACGCACACACCTGATAA+TGG 0.413957 3_2:+79626080 Msa0428670:CDS
ACACCTGGACTACTTAGTTA+TGG 0.414514 3_2:+79626366 Msa0428670:three_prime_UTR
ACTCCAGAGGTTACAATTTG+TGG 0.417163 3_2:+79623080 Msa0428670:CDS
GTAATTGTAGAGATTATCAT+AGG 0.418535 3_2:+79623027 Msa0428670:CDS
CTACCAGCAGGTCGCGTGAT+AGG 0.419897 3_2:-79624286 None:intergenic
TATAGTAGCTTGAGAGAGAA+AGG 0.422160 3_2:-79622051 None:intergenic
TCCTAAGAAGAGGTGTGGTT+TGG 0.425134 3_2:-79625977 None:intergenic
TATACATACTGGGAAGGAAT+AGG 0.429454 3_2:+79622070 Msa0428670:five_prime_UTR
CAATTTGTGGCCTTAAACAA+AGG 0.433957 3_2:+79623093 Msa0428670:CDS
CAGTTTCTTGTCTTGTGGAT+GGG 0.435642 3_2:+79622988 Msa0428670:CDS
TTGGAGTTTATAAAATGAAA+GGG 0.436768 3_2:+79622802 Msa0428670:CDS
GAAGGAGTGTTGGTCCCAAA+TGG 0.443655 3_2:+79626194 Msa0428670:CDS
AGGCAACAAAATTCATAAAT+GGG 0.451022 3_2:+79626454 Msa0428670:three_prime_UTR
AGATTATCATAGGCGTCATA+AGG 0.456365 3_2:+79623037 Msa0428670:CDS
GCAGGTCGCGTGATAGGTTC+AGG 0.457130 3_2:-79624280 None:intergenic
ACAGTTTCTTGTCTTGTGGA+TGG 0.459317 3_2:+79622987 Msa0428670:CDS
AATGTCTCTTATGCAGCCCT+TGG 0.462202 3_2:+79626133 Msa0428670:CDS
TGTTGATTTGAAGCTTGGTC+AGG 0.463472 3_2:+79622833 Msa0428670:CDS
AAGCACCTTCTTGGGATTTG+GGG 0.465651 3_2:+79622724 Msa0428670:CDS
CATGGCAGTAGAACTTGAAA+AGG 0.466360 3_2:-79625763 None:intergenic
AGCTGTAGGAAACGTTTAGA+TGG 0.466807 3_2:+79624229 Msa0428670:CDS
AGGCCACAAATTGTAACCTC+TGG 0.469390 3_2:-79623083 None:intergenic
TTTGGAGTTTATAAAATGAA+AGG 0.469867 3_2:+79622801 Msa0428670:CDS
TGGGACCAACACTCCTTCCA+TGG 0.470666 3_2:-79626189 None:intergenic
ATTCAAAATGAACTAACAAA+GGG 0.474557 3_2:-79626334 None:intergenic
ATGTCTCTTATGCAGCCCTT+GGG 0.480370 3_2:+79626134 Msa0428670:CDS
GGTTCTGCCAACAGTGTAGC+AGG 0.480510 3_2:+79623114 Msa0428670:CDS
TAACAATAGCTTTGAGTCCA+TGG 0.485578 3_2:+79626172 Msa0428670:CDS
CCACCACTCGTTGCCTGACA+TGG 0.488636 3_2:-79622308 None:intergenic
TTGTTCCTCGTTGTATAACA+TGG 0.491290 3_2:+79626232 Msa0428670:CDS
CGCGTGATAGGTTCAGGCTG+TGG 0.502946 3_2:-79624274 None:intergenic
CTCATTACTTCCTGTGAAAG+TGG 0.505406 3_2:+79625810 Msa0428670:CDS
TATCAACCACATGAACTTGC+TGG 0.506816 3_2:-79625857 None:intergenic
TGATAATGGTTTGAATCAAA+TGG 0.506912 3_2:+79626094 Msa0428670:CDS
TTGTATAACATGGGTTCTGA+TGG 0.507293 3_2:+79626242 Msa0428670:CDS
GAAATGAAATTGTGGATCAC+AGG 0.507703 3_2:-79622217 None:intergenic
TCAACTATTTCCCTATCAAT+GGG 0.507836 3_2:+79626286 Msa0428670:CDS
ACTGCAACCACCTACGAAGA+AGG 0.508186 3_2:+79625903 Msa0428670:CDS
TGAGTCCATGGAAGGAGTGT+TGG 0.509096 3_2:+79626184 Msa0428670:CDS
GAACCTATCACGCGACCTGC+TGG 0.513292 3_2:+79624283 Msa0428670:CDS
TTGCTACTTGTCCTAAGAAG+AGG 0.514720 3_2:-79625987 None:intergenic
ATTGACAGTTTCTTGTCTTG+TGG 0.515582 3_2:+79622983 Msa0428670:CDS
CTTGAGAGAGAAAGGAAAGG+AGG 0.516293 3_2:-79622043 None:intergenic
AAGTTGTTTCCCTTCTTCGT+AGG 0.524258 3_2:-79625913 None:intergenic
CATTCAAAATGAACTAACAA+AGG 0.532453 3_2:-79626335 None:intergenic
CCATGTCAGGCAACGAGTGG+TGG 0.532566 3_2:+79622308 Msa0428670:five_prime_UTR
TCCCTCACAGAATCCATGTC+AGG 0.533090 3_2:+79622295 Msa0428670:five_prime_UTR
AGGCAACGAGTGGTGGATGA+AGG 0.538395 3_2:+79622315 Msa0428670:five_prime_UTR
GAAGATCCTGAAGAAGAAGT+AGG 0.539972 3_2:-79622930 None:intergenic
TTGAATGAATTCTTTACACC+TGG 0.541734 3_2:+79626351 Msa0428670:three_prime_UTR
GTGAAGTCTACCACTTTCAC+AGG 0.545148 3_2:-79625820 None:intergenic
AGCACCTTCTTGGGATTTGG+GGG 0.546781 3_2:+79622725 Msa0428670:CDS
TGTTCCTCGTTGTATAACAT+GGG 0.547164 3_2:+79626233 Msa0428670:CDS
CTCAAGCTACTATACATACT+GGG 0.547538 3_2:+79622060 Msa0428670:five_prime_UTR
CCATACATGAAATGAAATTG+TGG 0.548130 3_2:-79622225 None:intergenic
TTGTTTCCCTTCTTCGTAGG+TGG 0.548824 3_2:-79625910 None:intergenic
TTTAGGTAACCAAACAAAGA+AGG 0.550348 3_2:+79622621 Msa0428670:intron
AAACCATAACTAAGTAGTCC+AGG 0.551429 3_2:-79626369 None:intergenic
TGGAGTTTATAAAATGAAAG+GGG 0.553424 3_2:+79622803 Msa0428670:CDS
AAGGAGTGTTGGTCCCAAAT+GGG 0.554973 3_2:+79626195 Msa0428670:CDS
CTGCCATGGTGAATTCAGCT+TGG 0.557661 3_2:+79625778 Msa0428670:CDS
CTGCAACCACCTACGAAGAA+GGG 0.560980 3_2:+79625904 Msa0428670:CDS
TTCAAAATGAACTAACAAAG+GGG 0.565902 3_2:-79626333 None:intergenic
GGAACAGTGTTAAGGGGACC+TGG 0.567368 3_2:-79622174 None:intergenic
CCACATGAACTTGCTGGTGT+TGG 0.568946 3_2:-79625851 None:intergenic
CCCTTGGGACTGAGTCTGCA+TGG 0.573686 3_2:+79626149 Msa0428670:CDS
TGTGGTTTGGCTATGAAGTG+AGG 0.577121 3_2:-79625964 None:intergenic
ATTACCCAACATAGAAACAA+TGG 0.578453 3_2:+79622764 Msa0428670:CDS
TAGCTTGAGAGAGAAAGGAA+AGG 0.582045 3_2:-79622046 None:intergenic
GTGGTTTGGCTATGAAGTGA+GGG 0.584332 3_2:-79625963 None:intergenic
GTGAATTCAGCTTGGAGTAG+CGG 0.589283 3_2:+79625786 Msa0428670:CDS
GCATCATTAGACAAAGGAAG+TGG 0.590112 3_2:-79622882 None:intergenic
GATTTGAAGCTTGGTCAGGT+TGG 0.592453 3_2:+79622837 Msa0428670:CDS
CATTGATAGGGAAATAGTTG+AGG 0.598793 3_2:-79626284 None:intergenic
AACTTGAAAAGGGTAGCACC+TGG 0.599492 3_2:-79625752 None:intergenic
ACCATGCAGACTCAGTCCCA+AGG 0.600324 3_2:-79626150 None:intergenic
ATATATACCTGCTACACTGT+TGG 0.601239 3_2:-79623121 None:intergenic
TTACAAGAAGTATATCATCC+AGG 0.601288 3_2:+79622156 Msa0428670:five_prime_UTR
GACAGAAGAGAGAGAGCACA+AGG 0.601971 3_2:-79626050 None:intergenic
AATAGCTTTGAGTCCATGGA+AGG 0.603284 3_2:+79626176 Msa0428670:CDS
ATGGCAGTAGAACTTGAAAA+GGG 0.604257 3_2:-79625762 None:intergenic
TGCATAAGAGACATTGAATG+AGG 0.607401 3_2:-79626125 None:intergenic
GCCTGACATGGATTCTGTGA+GGG 0.620984 3_2:-79622296 None:intergenic
AGCTACTATACATACTGGGA+AGG 0.621960 3_2:+79622064 Msa0428670:five_prime_UTR
ATCAGAGGAACAGTGTTAAG+GGG 0.622819 3_2:-79622180 None:intergenic
GACATGGATTCTGTGAGGGA+GGG 0.625616 3_2:-79622292 None:intergenic
TAGCAGACAATAGCAGCAGA+AGG 0.627951 3_2:-79622351 None:intergenic
CCATGCAGACTCAGTCCCAA+GGG 0.628449 3_2:-79626149 None:intergenic
ATGGGTTCTGATGGATCACA+AGG 0.638864 3_2:+79626251 Msa0428670:CDS
GCACCTTCTTGGGATTTGGG+GGG 0.648392 3_2:+79622726 Msa0428670:CDS
ACTTGAAAAGGGTAGCACCT+GGG 0.652466 3_2:-79625751 None:intergenic
ACTTGTCCTAAGAAGAGGTG+TGG 0.652942 3_2:-79625982 None:intergenic
GATAATGGATAAGAGATCAG+AGG 0.653497 3_2:-79622195 None:intergenic
AATCCATGTCAGGCAACGAG+TGG 0.655129 3_2:+79622305 Msa0428670:five_prime_UTR
TGACATGGATTCTGTGAGGG+AGG 0.656056 3_2:-79622293 None:intergenic
TACACTGTATTGTTACGTGA+GGG 0.657433 3_2:-79622269 None:intergenic
GTACACTGTATTGTTACGTG+AGG 0.658062 3_2:-79622270 None:intergenic
ACAACAGCATCATTAGACAA+AGG 0.660295 3_2:-79622888 None:intergenic
CCAACACCAGCAAGTTCATG+TGG 0.666058 3_2:+79625851 Msa0428670:CDS
AGGAAGTGGTGATTGATCAG+TGG 0.671389 3_2:-79622868 None:intergenic
ACTTCATTCTAAGACTCCAG+AGG 0.672861 3_2:+79623067 Msa0428670:CDS
TCAAAATGAACTAACAAAGG+GGG 0.677917 3_2:-79626332 None:intergenic
TGCCTGACATGGATTCTGTG+AGG 0.692886 3_2:-79622297 None:intergenic
ACTCCAAGCTGAATTCACCA+TGG 0.715980 3_2:-79625781 None:intergenic
AATTTATGATCTCTATCACG+AGG 0.726025 3_2:+79626417 Msa0428670:three_prime_UTR
AGAACCCATGTTATACAACG+AGG 0.772576 3_2:-79626237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAATAAATTATATTTT+TGG + chr3_2:79622124-79622143 Msa0428670:five_prime_UTR 0.0%
!! AAAATAAATAAATAAATAAA+TGG - chr3_2:79622400-79622419 None:intergenic 0.0%
!!! TTATTAAATAACTGATTTAT+CGG - chr3_2:79623431-79623450 None:intergenic 10.0%
!! TTATTTAATAAATCTAAAAG+AGG + chr3_2:79623440-79623459 Msa0428670:intron 10.0%
!! AATATAATAATATTATTGGT+AGG + chr3_2:79624736-79624755 Msa0428670:intron 10.0%
!! ATATAATAATATTATTGGTA+GGG + chr3_2:79624737-79624756 Msa0428670:intron 10.0%
!!! ATATATCATTATTTTGTTAA+TGG - chr3_2:79625653-79625672 None:intergenic 10.0%
!!! TTTTATTTTTGCCAAATATA+GGG - chr3_2:79622105-79622124 None:intergenic 15.0%
!!! ATTTTATTTTTGCCAAATAT+AGG - chr3_2:79622106-79622125 None:intergenic 15.0%
!!! TTTAGTTTTTGTTGTTATTA+TGG + chr3_2:79622689-79622708 Msa0428670:exon 15.0%
!!! AATTTTAGAGATTAATTTGA+CGG - chr3_2:79623280-79623299 None:intergenic 15.0%
!! ACAATATTTACTTATAAATG+TGG - chr3_2:79623361-79623380 None:intergenic 15.0%
!! ATATTATAGTCTAGATATAT+CGG - chr3_2:79623405-79623424 None:intergenic 15.0%
!! GATAGAATAAAATTATAAAG+CGG - chr3_2:79623786-79623805 None:intergenic 15.0%
!! CATAATTACATTTAGTTATA+AGG + chr3_2:79623905-79623924 Msa0428670:intron 15.0%
!! GAAAACATAGTTTAATTATA+TGG + chr3_2:79624011-79624030 Msa0428670:intron 15.0%
!! TTGTACTTTAAATAAACTAA+TGG - chr3_2:79625688-79625707 None:intergenic 15.0%
!!! ATTTCATGTATGGTTTTTAA+AGG + chr3_2:79622235-79622254 Msa0428670:five_prime_UTR 20.0%
!! AACAATTGTGAATGATATTT+AGG + chr3_2:79622604-79622623 Msa0428670:intron 20.0%
!!! TTTGGAGTTTATAAAATGAA+AGG + chr3_2:79622801-79622820 Msa0428670:CDS 20.0%
!! TTGGAGTTTATAAAATGAAA+GGG + chr3_2:79622802-79622821 Msa0428670:CDS 20.0%
!!! CTGTTATATTTTATAGCTTA+GGG - chr3_2:79623203-79623222 None:intergenic 20.0%
!!! TCTGTTATATTTTATAGCTT+AGG - chr3_2:79623204-79623223 None:intergenic 20.0%
!!! TTAGTTTGTATATGCATTTA+TGG + chr3_2:79623605-79623624 Msa0428670:intron 20.0%
!! TTTGGTTAAAGAATAAAGAA+AGG - chr3_2:79623729-79623748 None:intergenic 20.0%
!!! ATATATTGCCTAGATATTTT+GGG + chr3_2:79624400-79624419 Msa0428670:intron 20.0%
!! CAATTTCTCTTAAAAAACAT+TGG - chr3_2:79624797-79624816 None:intergenic 20.0%
!!! CTGTCATAGTTTTAAAATTT+GGG - chr3_2:79625517-79625536 None:intergenic 20.0%
!!! TCTGTCATAGTTTTAAAATT+TGG - chr3_2:79625518-79625537 None:intergenic 20.0%
!!! CAGAATATTTAAGATATGTT+AGG + chr3_2:79625534-79625553 Msa0428670:intron 20.0%
!! GTAATATAATATGATGCATT+AGG + chr3_2:79625606-79625625 Msa0428670:intron 20.0%
!!! TATTTTGTTAATGGCTAATA+AGG - chr3_2:79625644-79625663 None:intergenic 20.0%
!! ATTCAAAATGAACTAACAAA+GGG - chr3_2:79626337-79626356 None:intergenic 20.0%
! TTGCTTCATTGTATTATGTT+AGG + chr3_2:79622439-79622458 Msa0428670:intron 25.0%
!! TACTTGACATTTTTGTTACT+TGG + chr3_2:79622501-79622520 Msa0428670:intron 25.0%
! GTTCAATATATTTATGCTAC+TGG + chr3_2:79622537-79622556 Msa0428670:intron 25.0%
!!! TTTTTGTTGTTATTATGGAG+TGG + chr3_2:79622694-79622713 Msa0428670:exon 25.0%
! TGGAGTTTATAAAATGAAAG+GGG + chr3_2:79622803-79622822 Msa0428670:CDS 25.0%
! GTAATTGTAGAGATTATCAT+AGG + chr3_2:79623027-79623046 Msa0428670:CDS 25.0%
! AAAGGTAATTAAGATGCTAA+AGG - chr3_2:79623711-79623730 None:intergenic 25.0%
! AATCTTAATTTCCTTCATGT+AGG + chr3_2:79624170-79624189 Msa0428670:intron 25.0%
!! CATATATTGCCTAGATATTT+TGG + chr3_2:79624399-79624418 Msa0428670:intron 25.0%
! CCTAATAATTTCAGCATTAT+CGG + chr3_2:79624506-79624525 Msa0428670:intron 25.0%
! ATATATTTCCGTATGTTTGT+GGG - chr3_2:79624597-79624616 None:intergenic 25.0%
! TATATATTTCCGTATGTTTG+TGG - chr3_2:79624598-79624617 None:intergenic 25.0%
! TATACTTATATCAGATGAGT+AGG + chr3_2:79624614-79624633 Msa0428670:intron 25.0%
! AGATTAATTAATCGCATGAA+AGG - chr3_2:79624821-79624840 None:intergenic 25.0%
! TTGAAGCTTCTATAAAGTTA+TGG - chr3_2:79624872-79624891 None:intergenic 25.0%
! TTTATAGAAGCTTCAAATTC+AGG + chr3_2:79624876-79624895 Msa0428670:intron 25.0%
!!! ATTTGAAAAGTTGATGTATG+TGG + chr3_2:79624993-79625012 Msa0428670:intron 25.0%
! TTGATGTATGTGGTTAAATA+GGG + chr3_2:79625003-79625022 Msa0428670:intron 25.0%
! ATAGGGAGTAATTAACTAAT+CGG + chr3_2:79625020-79625039 Msa0428670:intron 25.0%
!!! CAATGAAAGCATTAAATGTT+GGG - chr3_2:79625071-79625090 None:intergenic 25.0%
! CAACATTTAATGCTTTCATT+GGG + chr3_2:79625070-79625089 Msa0428670:intron 25.0%
! ATAGTACATTTATTCTACGT+GGG - chr3_2:79625259-79625278 None:intergenic 25.0%
! GATAACATGAACTAGAAATT+AGG - chr3_2:79625371-79625390 None:intergenic 25.0%
!! AAATAACTGATAGTGCAAAT+TGG + chr3_2:79625398-79625417 Msa0428670:intron 25.0%
! TTCACGAGTAATAAAATAGA+TGG - chr3_2:79625565-79625584 None:intergenic 25.0%
!!! TTTTACTGCTATACTTTTTC+AGG + chr3_2:79625726-79625745 Msa0428670:intron 25.0%
!! GATAAACAAGATCATTTTCT+TGG + chr3_2:79625876-79625895 Msa0428670:CDS 25.0%
! ATTTGATTCAAACCATTATC+AGG - chr3_2:79626095-79626114 None:intergenic 25.0%
!!! TGATAATGGTTTGAATCAAA+TGG + chr3_2:79626094-79626113 Msa0428670:CDS 25.0%
!! ATTTTCTATTCCCATTGATA+GGG - chr3_2:79626299-79626318 None:intergenic 25.0%
!! AATTTTCTATTCCCATTGAT+AGG - chr3_2:79626300-79626319 None:intergenic 25.0%
! TTCAAAATGAACTAACAAAG+GGG - chr3_2:79626336-79626355 None:intergenic 25.0%
! CATTCAAAATGAACTAACAA+AGG - chr3_2:79626338-79626357 None:intergenic 25.0%
! CATACATTACTTTCTCAATA+AGG - chr3_2:79626396-79626415 None:intergenic 25.0%
! TAGGCAACAAAATTCATAAA+TGG + chr3_2:79626453-79626472 Msa0428670:three_prime_UTR 25.0%
! AGGCAACAAAATTCATAAAT+GGG + chr3_2:79626454-79626473 Msa0428670:three_prime_UTR 25.0%
! TTACAAGAAGTATATCATCC+AGG + chr3_2:79622156-79622175 Msa0428670:five_prime_UTR 30.0%
CCATACATGAAATGAAATTG+TGG - chr3_2:79622228-79622247 None:intergenic 30.0%
CCACAATTTCATTTCATGTA+TGG + chr3_2:79622225-79622244 Msa0428670:five_prime_UTR 30.0%
TGTTAGGTAACCTTAATTTC+AGG + chr3_2:79622455-79622474 Msa0428670:intron 30.0%
TTTAGGTAACCAAACAAAGA+AGG + chr3_2:79622621-79622640 Msa0428670:intron 30.0%
ATTACCCAACATAGAAACAA+TGG + chr3_2:79622764-79622783 Msa0428670:CDS 30.0%
!! TCTTCCATTGTTTCTATGTT+GGG - chr3_2:79622771-79622790 None:intergenic 30.0%
!! TTCTTCCATTGTTTCTATGT+TGG - chr3_2:79622772-79622791 None:intergenic 30.0%
ATGGAAGAATCAAACAGATT+TGG + chr3_2:79622783-79622802 Msa0428670:CDS 30.0%
!!! TTTTCTGTTGATTTGAAGCT+TGG + chr3_2:79622828-79622847 Msa0428670:CDS 30.0%
ATGTTTAATGACTACTTCCT+CGG + chr3_2:79623334-79623353 Msa0428670:intron 30.0%
TTGTTTATAAATGTGACCAG+AGG + chr3_2:79623468-79623487 Msa0428670:intron 30.0%
TGTTTATAAATGTGACCAGA+GGG + chr3_2:79623469-79623488 Msa0428670:intron 30.0%
ACATAAGTTATGAACCAACT+TGG + chr3_2:79623509-79623528 Msa0428670:intron 30.0%
! ATGTGTTGAGAGATTCTTTT+TGG - chr3_2:79623747-79623766 None:intergenic 30.0%
! ACACTTTCAATCTGAAATGT+CGG - chr3_2:79623826-79623845 None:intergenic 30.0%
! TTTCAGATTGAAAGTGTGTA+TGG + chr3_2:79623829-79623848 Msa0428670:intron 30.0%
AATTATGTAAGCATGTGTGT+CGG - chr3_2:79623892-79623911 None:intergenic 30.0%
AAATTAAGATTCAGGACTTG+AGG - chr3_2:79624161-79624180 None:intergenic 30.0%
CATGAAGGAAATTAAGATTC+AGG - chr3_2:79624169-79624188 None:intergenic 30.0%
ATGAAAGAAAAAGAAGCTGT+AGG + chr3_2:79624215-79624234 Msa0428670:CDS 30.0%
!!! AGTTTTTTGTCCAATTACCA+AGG + chr3_2:79624307-79624326 Msa0428670:CDS 30.0%
TCTAGGCAATATATGCAAAT+GGG - chr3_2:79624394-79624413 None:intergenic 30.0%
ATCTAGGCAATATATGCAAA+TGG - chr3_2:79624395-79624414 None:intergenic 30.0%
TCTACAAACCCAAAATATCT+AGG - chr3_2:79624411-79624430 None:intergenic 30.0%
!! CAATTGAGTGTTAGTCTTAA+TGG - chr3_2:79624448-79624467 None:intergenic 30.0%
!!! CGGGTTTTAAATTTAGATGA+AGG + chr3_2:79624476-79624495 Msa0428670:intron 30.0%
CCGATAATGCTGAAATTATT+AGG - chr3_2:79624509-79624528 None:intergenic 30.0%
CATATCTAGGCATATATAGT+TGG - chr3_2:79624547-79624566 None:intergenic 30.0%
TATATTTCCGTATGTTTGTG+GGG - chr3_2:79624596-79624615 None:intergenic 30.0%
! TGAAGCAAACTCTTTTTGTT+TGG - chr3_2:79624771-79624790 None:intergenic 30.0%
AAGCTTCTATAAAGTTATGG+TGG - chr3_2:79624869-79624888 None:intergenic 30.0%
CAAAATCTCGATGAAATATC+AGG - chr3_2:79624914-79624933 None:intergenic 30.0%
! CTGATATTTCATCGAGATTT+TGG + chr3_2:79624912-79624931 Msa0428670:intron 30.0%
GTTGATGTATGTGGTTAAAT+AGG + chr3_2:79625002-79625021 Msa0428670:intron 30.0%
TAGGGAGTAATTAACTAATC+GGG + chr3_2:79625021-79625040 Msa0428670:intron 30.0%
!! CCAATGAAAGCATTAAATGT+TGG - chr3_2:79625072-79625091 None:intergenic 30.0%
CCAACATTTAATGCTTTCAT+TGG + chr3_2:79625069-79625088 Msa0428670:intron 30.0%
ACTCATCTTTAAGTAATCGA+TGG - chr3_2:79625140-79625159 None:intergenic 30.0%
CATAGTACATTTATTCTACG+TGG - chr3_2:79625260-79625279 None:intergenic 30.0%
ATCTAAATGTCTCGTCTATT+AGG - chr3_2:79625303-79625322 None:intergenic 30.0%
! TCTAGTTCATGTTATCCTTA+AGG + chr3_2:79625375-79625394 Msa0428670:intron 30.0%
! CACTATCAGTTATTTCCTTA+AGG - chr3_2:79625393-79625412 None:intergenic 30.0%
ACAATCCTACAAAATTGACT+CGG - chr3_2:79625476-79625495 None:intergenic 30.0%
TCAACTATTTCCCTATCAAT+GGG + chr3_2:79626286-79626305 Msa0428670:CDS 30.0%
TCAAAATGAACTAACAAAGG+GGG - chr3_2:79626335-79626354 None:intergenic 30.0%
TTGAATGAATTCTTTACACC+TGG + chr3_2:79626351-79626370 Msa0428670:three_prime_UTR 30.0%
AATTTATGATCTCTATCACG+AGG + chr3_2:79626417-79626436 Msa0428670:three_prime_UTR 30.0%
TATAGTAGCTTGAGAGAGAA+AGG - chr3_2:79622054-79622073 None:intergenic 35.0%
TCTCAAGCTACTATACATAC+TGG + chr3_2:79622059-79622078 Msa0428670:five_prime_UTR 35.0%
CTCAAGCTACTATACATACT+GGG + chr3_2:79622060-79622079 Msa0428670:five_prime_UTR 35.0%
TATACATACTGGGAAGGAAT+AGG + chr3_2:79622070-79622089 Msa0428670:five_prime_UTR 35.0%
GGAAGAACAATCCCTATATT+TGG + chr3_2:79622091-79622110 Msa0428670:five_prime_UTR 35.0%
!! GATAATGGATAAGAGATCAG+AGG - chr3_2:79622198-79622217 None:intergenic 35.0%
AATTGTGGATCACAGGATAA+TGG - chr3_2:79622213-79622232 None:intergenic 35.0%
GAAATGAAATTGTGGATCAC+AGG - chr3_2:79622220-79622239 None:intergenic 35.0%
TACACTGTATTGTTACGTGA+GGG - chr3_2:79622272-79622291 None:intergenic 35.0%
TAACAAAGTTCCAAAGACAC+TGG - chr3_2:79622483-79622502 None:intergenic 35.0%
CTTCAAAGTCCTTCTTTGTT+TGG - chr3_2:79622633-79622652 None:intergenic 35.0%
!! GAATTTGAAAGCACCTTCTT+GGG + chr3_2:79622716-79622735 Msa0428670:CDS 35.0%
ACAACAGCATCATTAGACAA+AGG - chr3_2:79622891-79622910 None:intergenic 35.0%
!! AGAAGTAGGTGTTGCAATTT+TGG - chr3_2:79622919-79622938 None:intergenic 35.0%
ATTGACAGTTTCTTGTCTTG+TGG + chr3_2:79622983-79623002 Msa0428670:CDS 35.0%
AGATTATCATAGGCGTCATA+AGG + chr3_2:79623037-79623056 Msa0428670:CDS 35.0%
! CAATTTGTGGCCTTAAACAA+AGG + chr3_2:79623093-79623112 Msa0428670:CDS 35.0%
ATATATACCTGCTACACTGT+TGG - chr3_2:79623124-79623143 None:intergenic 35.0%
! GACTGATTTCATATAGCATG+TGG - chr3_2:79623230-79623249 None:intergenic 35.0%
TGTTTAATGACTACTTCCTC+GGG + chr3_2:79623335-79623354 Msa0428670:intron 35.0%
GATATAGTAACTATTCCCTC+TGG - chr3_2:79623487-79623506 None:intergenic 35.0%
TTCCATTCCATTGTTCATGT+TGG + chr3_2:79623659-79623678 Msa0428670:intron 35.0%
TATGAAGCCAACATGAACAA+TGG - chr3_2:79623669-79623688 None:intergenic 35.0%
TTTGTCCAATTACCAAGGTA+AGG + chr3_2:79624312-79624331 Msa0428670:intron 35.0%
ACCACATTGTTTATCTTGAG+TGG + chr3_2:79624367-79624386 Msa0428670:intron 35.0%
TCCACTCAAGATAAACAATG+TGG - chr3_2:79624371-79624390 None:intergenic 35.0%
!!! TTTTGGGTTTGTAGATGAAG+CGG + chr3_2:79624416-79624435 Msa0428670:intron 35.0%
AAGACTAACACTCAATTGTG+AGG + chr3_2:79624450-79624469 Msa0428670:intron 35.0%
GCATGCATCAATTCATATCT+AGG - chr3_2:79624560-79624579 None:intergenic 35.0%
TAAAGATCCCCACAAACATA+CGG + chr3_2:79624586-79624605 Msa0428670:intron 35.0%
AGACATAAATGGACCAAATC+AGG - chr3_2:79624685-79624704 None:intergenic 35.0%
TTAATGCTTTCATTGGGAGT+TGG + chr3_2:79625076-79625095 Msa0428670:intron 35.0%
!! CCTATAAGTAGTCATTTTCG+TGG - chr3_2:79625102-79625121 None:intergenic 35.0%
CCACGAAAATGACTACTTAT+AGG + chr3_2:79625099-79625118 Msa0428670:intron 35.0%
GAAAATGACTACTTATAGGC+TGG + chr3_2:79625103-79625122 Msa0428670:intron 35.0%
ACTACTTATAGGCTGGATTA+AGG + chr3_2:79625110-79625129 Msa0428670:intron 35.0%
AAATGTCTCGTCTATTAGGT+AGG - chr3_2:79625299-79625318 None:intergenic 35.0%
TAGACGAGACATTTAGATTG+AGG + chr3_2:79625305-79625324 Msa0428670:intron 35.0%
! TTTAGATTGAGGTTTTCTCG+TGG + chr3_2:79625316-79625335 Msa0428670:intron 35.0%
CGTGAAAAAACATGTTCACA+AGG + chr3_2:79625579-79625598 Msa0428670:intron 35.0%
ATGGCAGTAGAACTTGAAAA+GGG - chr3_2:79625765-79625784 None:intergenic 35.0%
TGCATAAGAGACATTGAATG+AGG - chr3_2:79626128-79626147 None:intergenic 35.0%
!! TAACAATAGCTTTGAGTCCA+TGG + chr3_2:79626172-79626191 Msa0428670:CDS 35.0%
TTGTTCCTCGTTGTATAACA+TGG + chr3_2:79626232-79626251 Msa0428670:CDS 35.0%
TGTTCCTCGTTGTATAACAT+GGG + chr3_2:79626233-79626252 Msa0428670:CDS 35.0%
! TTGTATAACATGGGTTCTGA+TGG + chr3_2:79626242-79626261 Msa0428670:CDS 35.0%
CATTGATAGGGAAATAGTTG+AGG - chr3_2:79626287-79626306 None:intergenic 35.0%
CTCAACTATTTCCCTATCAA+TGG + chr3_2:79626285-79626304 Msa0428670:CDS 35.0%
AAACCATAACTAAGTAGTCC+AGG - chr3_2:79626372-79626391 None:intergenic 35.0%
ACGAGGAGAAAAGAAAAACT+AGG + chr3_2:79626434-79626453 Msa0428670:three_prime_UTR 35.0%
TAGCTTGAGAGAGAAAGGAA+AGG - chr3_2:79622049-79622068 None:intergenic 40.0%
AGCTACTATACATACTGGGA+AGG + chr3_2:79622064-79622083 Msa0428670:five_prime_UTR 40.0%
ATCAGAGGAACAGTGTTAAG+GGG - chr3_2:79622183-79622202 None:intergenic 40.0%
GATCAGAGGAACAGTGTTAA+GGG - chr3_2:79622184-79622203 None:intergenic 40.0%
AGATCAGAGGAACAGTGTTA+AGG - chr3_2:79622185-79622204 None:intergenic 40.0%
GTACACTGTATTGTTACGTG+AGG - chr3_2:79622273-79622292 None:intergenic 40.0%
GACACTGGAACCTGAAATTA+AGG - chr3_2:79622468-79622487 None:intergenic 40.0%
!! ATTTCAGGTTCCAGTGTCTT+TGG + chr3_2:79622470-79622489 Msa0428670:intron 40.0%
!! GGAATTTGAAAGCACCTTCT+TGG + chr3_2:79622715-79622734 Msa0428670:CDS 40.0%
! AAAGCACCTTCTTGGGATTT+GGG + chr3_2:79622723-79622742 Msa0428670:CDS 40.0%
!! TGTTGATTTGAAGCTTGGTC+AGG + chr3_2:79622833-79622852 Msa0428670:CDS 40.0%
! ATTTGAAGCTTGGTCAGGTT+GGG + chr3_2:79622838-79622857 Msa0428670:CDS 40.0%
GCATCATTAGACAAAGGAAG+TGG - chr3_2:79622885-79622904 None:intergenic 40.0%
GAAGATCCTGAAGAAGAAGT+AGG - chr3_2:79622933-79622952 None:intergenic 40.0%
ACAGTTTCTTGTCTTGTGGA+TGG + chr3_2:79622987-79623006 Msa0428670:CDS 40.0%
CAGTTTCTTGTCTTGTGGAT+GGG + chr3_2:79622988-79623007 Msa0428670:CDS 40.0%
!! ACTTCATTCTAAGACTCCAG+AGG + chr3_2:79623067-79623086 Msa0428670:CDS 40.0%
ACTCCAGAGGTTACAATTTG+TGG + chr3_2:79623080-79623099 Msa0428670:CDS 40.0%
! GTTGGCAGAACCTTTGTTTA+AGG - chr3_2:79623106-79623125 None:intergenic 40.0%
TTACTTATAAATGTGGCCCG+AGG - chr3_2:79623354-79623373 None:intergenic 40.0%
AACTATCACTCTCTCCAAGT+TGG - chr3_2:79623526-79623545 None:intergenic 40.0%
GCTAACATGAACAGTGGATA+AGG - chr3_2:79623639-79623658 None:intergenic 40.0%
ATGGAAGCTAACATGAACAG+TGG - chr3_2:79623645-79623664 None:intergenic 40.0%
AGCCAACATGAACAATGGAA+TGG - chr3_2:79623664-79623683 None:intergenic 40.0%
CTCTCAACACATAAGAAACC+TGG + chr3_2:79623755-79623774 Msa0428670:intron 40.0%
TCAACACATAAGAAACCTGG+AGG + chr3_2:79623758-79623777 Msa0428670:intron 40.0%
AATTATAAAGCGGAACCTCC+AGG - chr3_2:79623776-79623795 None:intergenic 40.0%
TTGACGTGTTAATTCGTGAC+TGG + chr3_2:79623950-79623969 Msa0428670:intron 40.0%
GTTGTCACAGACTAGTAACA+TGG - chr3_2:79624123-79624142 None:intergenic 40.0%
AGCGAATGAAACCTACATGA+AGG - chr3_2:79624184-79624203 None:intergenic 40.0%
TTCATGTAGGTTTCATTCGC+TGG + chr3_2:79624183-79624202 Msa0428670:intron 40.0%
AGCTGTAGGAAACGTTTAGA+TGG + chr3_2:79624229-79624248 Msa0428670:CDS 40.0%
! GCTGTGGTTTTCTTCTTCTT+CGG - chr3_2:79624261-79624280 None:intergenic 40.0%
TTGGACAAAAAACTACCAGC+AGG - chr3_2:79624301-79624320 None:intergenic 40.0%
TCCAATTACCAAGGTAAGGT+TGG + chr3_2:79624316-79624335 Msa0428670:intron 40.0%
! ACCAACCTTACCTTGGTAAT+TGG - chr3_2:79624320-79624339 None:intergenic 40.0%
! ATTACCAAGGTAAGGTTGGT+TGG + chr3_2:79624320-79624339 Msa0428670:intron 40.0%
AACACTCAATTGTGAGGTCT+CGG + chr3_2:79624456-79624475 Msa0428670:intron 40.0%
GTATGTTTGTGGGGATCTTT+AGG - chr3_2:79624587-79624606 None:intergenic 40.0%
ACTCTATCACCTTGCTCTAA+TGG - chr3_2:79625187-79625206 None:intergenic 40.0%
TCTTAGACAGATGGCAATGT+TGG + chr3_2:79625229-79625248 Msa0428670:intron 40.0%
CTTAGACAGATGGCAATGTT+GGG + chr3_2:79625230-79625249 Msa0428670:intron 40.0%
!! TATTAGGTAGGAGAGCATCA+TGG - chr3_2:79625287-79625306 None:intergenic 40.0%
! ACCTTCCGAGTCAATTTTGT+AGG + chr3_2:79625468-79625487 Msa0428670:intron 40.0%
!! TCCTACAAAATTGACTCGGA+AGG - chr3_2:79625472-79625491 None:intergenic 40.0%
GGCTAATAAGGAACATGCTT+AGG - chr3_2:79625632-79625651 None:intergenic 40.0%
CATGGCAGTAGAACTTGAAA+AGG - chr3_2:79625766-79625785 None:intergenic 40.0%
!!! CTTTTCAAGTTCTACTGCCA+TGG + chr3_2:79625764-79625783 Msa0428670:CDS 40.0%
CTCATTACTTCCTGTGAAAG+TGG + chr3_2:79625810-79625829 Msa0428670:CDS 40.0%
TATCAACCACATGAACTTGC+TGG - chr3_2:79625860-79625879 None:intergenic 40.0%
! AAGTTGTTTCCCTTCTTCGT+AGG - chr3_2:79625916-79625935 None:intergenic 40.0%
! TTGCTACTTGTCCTAAGAAG+AGG - chr3_2:79625990-79626009 None:intergenic 40.0%
!! AATAGCTTTGAGTCCATGGA+AGG + chr3_2:79626176-79626195 Msa0428670:CDS 40.0%
AGAACCCATGTTATACAACG+AGG - chr3_2:79626240-79626259 None:intergenic 40.0%
ACACCTGGACTACTTAGTTA+TGG + chr3_2:79626366-79626385 Msa0428670:three_prime_UTR 40.0%
CTTGAGAGAGAAAGGAAAGG+AGG - chr3_2:79622046-79622065 None:intergenic 45.0%
TAGCAGACAATAGCAGCAGA+AGG - chr3_2:79622354-79622373 None:intergenic 45.0%
!! GAAAGCACCTTCTTGGGATT+TGG + chr3_2:79622722-79622741 Msa0428670:CDS 45.0%
AAGCACCTTCTTGGGATTTG+GGG + chr3_2:79622724-79622743 Msa0428670:CDS 45.0%
! GATTTGAAGCTTGGTCAGGT+TGG + chr3_2:79622837-79622856 Msa0428670:CDS 45.0%
AGGAAGTGGTGATTGATCAG+TGG - chr3_2:79622871-79622890 None:intergenic 45.0%
GCAACACCTACTTCTTCTTC+AGG + chr3_2:79622924-79622943 Msa0428670:CDS 45.0%
AGGCCACAAATTGTAACCTC+TGG - chr3_2:79623086-79623105 None:intergenic 45.0%
! GTATGGTGTTGAACACGAGT+TGG + chr3_2:79623846-79623865 Msa0428670:intron 45.0%
!! TGTTGAACACGAGTTGGTGT+CGG + chr3_2:79623852-79623871 Msa0428670:intron 45.0%
CGAGTTTGAACACAAACGCA+AGG - chr3_2:79624080-79624099 None:intergenic 45.0%
GCGTTTGTGTTCAAACTCGA+TGG + chr3_2:79624081-79624100 Msa0428670:intron 45.0%
CTAACCAACCAACCTTACCT+TGG - chr3_2:79624327-79624346 None:intergenic 45.0%
ACACTCAATTGTGAGGTCTC+GGG + chr3_2:79624457-79624476 Msa0428670:intron 45.0%
ATAGATGAGTGCGCCTGATT+TGG + chr3_2:79624669-79624688 Msa0428670:intron 45.0%
TAATGGTAGCCCTTTCCTCT+TGG - chr3_2:79625170-79625189 None:intergenic 45.0%
AAAGGGCTACCATTAGAGCA+AGG + chr3_2:79625175-79625194 Msa0428670:intron 45.0%
TGTCTAAGAGTTGACGTCCA+CGG - chr3_2:79625218-79625237 None:intergenic 45.0%
GACGTCAACTCTTAGACAGA+TGG + chr3_2:79625220-79625239 Msa0428670:intron 45.0%
!! CGTGGACTTCAGTCATTTTG+CGG + chr3_2:79625334-79625353 Msa0428670:intron 45.0%
!!! CTATACTTTTTCAGGCACCC+AGG + chr3_2:79625734-79625753 Msa0428670:intron 45.0%
ACTTGAAAAGGGTAGCACCT+GGG - chr3_2:79625754-79625773 None:intergenic 45.0%
AACTTGAAAAGGGTAGCACC+TGG - chr3_2:79625755-79625774 None:intergenic 45.0%
ACTCCAAGCTGAATTCACCA+TGG - chr3_2:79625784-79625803 None:intergenic 45.0%
GTGAATTCAGCTTGGAGTAG+CGG + chr3_2:79625786-79625805 Msa0428670:CDS 45.0%
GTGAAGTCTACCACTTTCAC+AGG - chr3_2:79625823-79625842 None:intergenic 45.0%
TTGTTTCCCTTCTTCGTAGG+TGG - chr3_2:79625913-79625932 None:intergenic 45.0%
! GTGGTTTGGCTATGAAGTGA+GGG - chr3_2:79625966-79625985 None:intergenic 45.0%
! TGTGGTTTGGCTATGAAGTG+AGG - chr3_2:79625967-79625986 None:intergenic 45.0%
! TCCTAAGAAGAGGTGTGGTT+TGG - chr3_2:79625980-79625999 None:intergenic 45.0%
ACTTGTCCTAAGAAGAGGTG+TGG - chr3_2:79625985-79626004 None:intergenic 45.0%
AATGTCTCTTATGCAGCCCT+TGG + chr3_2:79626133-79626152 Msa0428670:CDS 45.0%
ATGTCTCTTATGCAGCCCTT+GGG + chr3_2:79626134-79626153 Msa0428670:CDS 45.0%
!! AAGGAGTGTTGGTCCCAAAT+GGG + chr3_2:79626195-79626214 Msa0428670:CDS 45.0%
GATCACTCTCACTCCCATTT+GGG - chr3_2:79626211-79626230 None:intergenic 45.0%
TGATCACTCTCACTCCCATT+TGG - chr3_2:79626212-79626231 None:intergenic 45.0%
! ATGGGTTCTGATGGATCACA+AGG + chr3_2:79626251-79626270 Msa0428670:CDS 45.0%
!! TTAATTTCAAATTTAAATAT+AGG - chr3_2:79623167-79623186 None:intergenic 5.0%
!! CAATAATATTATTATATTAA+TGG - chr3_2:79624734-79624753 None:intergenic 5.0%
!! CATTAATATAATAATATTAT+TGG + chr3_2:79624732-79624751 Msa0428670:intron 5.0%
GACATGGATTCTGTGAGGGA+GGG - chr3_2:79622295-79622314 None:intergenic 50.0%
TGACATGGATTCTGTGAGGG+AGG - chr3_2:79622296-79622315 None:intergenic 50.0%
TCCCTCACAGAATCCATGTC+AGG + chr3_2:79622295-79622314 Msa0428670:five_prime_UTR 50.0%
GCCTGACATGGATTCTGTGA+GGG - chr3_2:79622299-79622318 None:intergenic 50.0%
TGCCTGACATGGATTCTGTG+AGG - chr3_2:79622300-79622319 None:intergenic 50.0%
AATCCATGTCAGGCAACGAG+TGG + chr3_2:79622305-79622324 Msa0428670:five_prime_UTR 50.0%
AGCACCTTCTTGGGATTTGG+GGG + chr3_2:79622725-79622744 Msa0428670:CDS 50.0%
ATACCCCCCAAATCCCAAGA+AGG - chr3_2:79622732-79622751 None:intergenic 50.0%
! GGATTTGGGGGGTATAGAAG+AGG + chr3_2:79622737-79622756 Msa0428670:CDS 50.0%
GTGATTACGCAATGTGCCCT+TGG + chr3_2:79624646-79624665 Msa0428670:intron 50.0%
AGGCGCACTCATCTATCCAA+GGG - chr3_2:79624665-79624684 None:intergenic 50.0%
GAGCGCGACAGAGACATAAA+TGG - chr3_2:79624696-79624715 None:intergenic 50.0%
TTATGTCTCTGTCGCGCTCA+TGG + chr3_2:79624697-79624716 Msa0428670:intron 50.0%
TCGCGCTCATGGCAATCTAA+TGG + chr3_2:79624708-79624727 Msa0428670:intron 50.0%
AGATGAGTGAAACCGCCAAG+AGG + chr3_2:79625152-79625171 Msa0428670:intron 50.0%
AGTGAAACCGCCAAGAGGAA+AGG + chr3_2:79625157-79625176 Msa0428670:intron 50.0%
GTGAAACCGCCAAGAGGAAA+GGG + chr3_2:79625158-79625177 Msa0428670:intron 50.0%
CTGCCATGGTGAATTCAGCT+TGG + chr3_2:79625778-79625797 Msa0428670:CDS 50.0%
!! GAACTTGCTGGTGTTGGTTG+TGG - chr3_2:79625848-79625867 None:intergenic 50.0%
!! CCACATGAACTTGCTGGTGT+TGG - chr3_2:79625854-79625873 None:intergenic 50.0%
CCAACACCAGCAAGTTCATG+TGG + chr3_2:79625851-79625870 Msa0428670:CDS 50.0%
ACTGCAACCACCTACGAAGA+AGG + chr3_2:79625903-79625922 Msa0428670:CDS 50.0%
CTGCAACCACCTACGAAGAA+GGG + chr3_2:79625904-79625923 Msa0428670:CDS 50.0%
GCCAAACCACACCTCTTCTT+AGG + chr3_2:79625976-79625995 Msa0428670:CDS 50.0%
! GACAGAAGAGAGAGAGCACA+AGG - chr3_2:79626053-79626072 None:intergenic 50.0%
CAGACGCACACACCTGATAA+TGG + chr3_2:79626080-79626099 Msa0428670:CDS 50.0%
! TGAGTCCATGGAAGGAGTGT+TGG + chr3_2:79626184-79626203 Msa0428670:CDS 50.0%
!! GAAGGAGTGTTGGTCCCAAA+TGG + chr3_2:79626194-79626213 Msa0428670:CDS 50.0%
GGAACAGTGTTAAGGGGACC+TGG - chr3_2:79622177-79622196 None:intergenic 55.0%
!! AGGCAACGAGTGGTGGATGA+AGG + chr3_2:79622315-79622334 Msa0428670:five_prime_UTR 55.0%
GCACCTTCTTGGGATTTGGG+GGG + chr3_2:79622726-79622745 Msa0428670:CDS 55.0%
GGTTCTGCCAACAGTGTAGC+AGG + chr3_2:79623114-79623133 Msa0428670:CDS 55.0%
! CATGTGTGTCGGCGTCATGT+TGG - chr3_2:79623881-79623900 None:intergenic 55.0%
CAGGCGCACTCATCTATCCA+AGG - chr3_2:79624666-79624685 None:intergenic 55.0%
TGGTAGCCCTTTCCTCTTGG+CGG - chr3_2:79625167-79625186 None:intergenic 55.0%
TGATAGAGTGAAAGCCGCCG+TGG + chr3_2:79625198-79625217 Msa0428670:intron 55.0%
CTAAGAGTTGACGTCCACGG+CGG - chr3_2:79625215-79625234 None:intergenic 55.0%
CCATGCAGACTCAGTCCCAA+GGG - chr3_2:79626152-79626171 None:intergenic 55.0%
ACCATGCAGACTCAGTCCCA+AGG - chr3_2:79626153-79626172 None:intergenic 55.0%
TGGGACCAACACTCCTTCCA+TGG - chr3_2:79626192-79626211 None:intergenic 55.0%
CCACCACTCGTTGCCTGACA+TGG - chr3_2:79622311-79622330 None:intergenic 60.0%
CCATGTCAGGCAACGAGTGG+TGG + chr3_2:79622308-79622327 Msa0428670:five_prime_UTR 60.0%
CGCGTGATAGGTTCAGGCTG+TGG - chr3_2:79624277-79624296 None:intergenic 60.0%
GCAGGTCGCGTGATAGGTTC+AGG - chr3_2:79624283-79624302 None:intergenic 60.0%
GAACCTATCACGCGACCTGC+TGG + chr3_2:79624283-79624302 Msa0428670:CDS 60.0%
CTACCAGCAGGTCGCGTGAT+AGG - chr3_2:79624289-79624308 None:intergenic 60.0%
CCCTTGGGACTGAGTCTGCA+TGG + chr3_2:79626149-79626168 Msa0428670:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 79621988 79626496 79621988 ID=Msa0428670;Name=Msa0428670
chr3_2 mRNA 79621988 79626496 79621988 ID=Msa0428670-mRNA-1;Parent=Msa0428670;Name=Msa0428670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=472|1|1|1|0.66|0.5|4|183|376
chr3_2 exon 79621988 79622377 79621988 ID=Msa0428670-mRNA-1:exon:21509;Parent=Msa0428670-mRNA-1
chr3_2 exon 79622626 79623135 79622626 ID=Msa0428670-mRNA-1:exon:21510;Parent=Msa0428670-mRNA-1
chr3_2 exon 79624192 79624328 79624192 ID=Msa0428670-mRNA-1:exon:21511;Parent=Msa0428670-mRNA-1
chr3_2 exon 79625748 79626496 79625748 ID=Msa0428670-mRNA-1:exon:21512;Parent=Msa0428670-mRNA-1
chr3_2 five_prime_UTR 79621988 79622377 79621988 ID=Msa0428670-mRNA-1:five_prime_utr;Parent=Msa0428670-mRNA-1
chr3_2 five_prime_UTR 79622626 79622707 79622626 ID=Msa0428670-mRNA-1:five_prime_utr;Parent=Msa0428670-mRNA-1
chr3_2 CDS 79622708 79623135 79622708 ID=Msa0428670-mRNA-1:cds;Parent=Msa0428670-mRNA-1
chr3_2 CDS 79624192 79624328 79624192 ID=Msa0428670-mRNA-1:cds;Parent=Msa0428670-mRNA-1
chr3_2 CDS 79625748 79626313 79625748 ID=Msa0428670-mRNA-1:cds;Parent=Msa0428670-mRNA-1
chr3_2 three_prime_UTR 79626314 79626496 79626314 ID=Msa0428670-mRNA-1:three_prime_utr;Parent=Msa0428670-mRNA-1
Gene Sequence

>Msa0428670

ATGGAGTGGAATTTGAAAGCACCTTCTTGGGATTTGGGGGGTATAGAAGAGGCAACATTACCCAACATAGAAACAATGGAAGAATCAAACAGATTTGGAGTTTATAAAATGAAAGGGGAGTTTTCTGTTGATTTGAAGCTTGGTCAGGTTGGGAACTCTGCCACTGATCAATCACCACTTCCTTTGTCTAATGATGCTGTTGTTGTCTCCAAAATTGCAACACCTACTTCTTCTTCAGGATCTTCTAAGAGAGCTAGAGCTATGAATAATGCAACATTGACAGTTTCTTGTCTTGTGGATGGGTGCAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCTAAGACTCCAGAGGTTACAATTTGTGGCCTTAAACAAAGGTTCTGCCAACAGTGTAGCAGGTTTCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGTAGGAAACGTTTAGATGGACACAACCGAAGAAGAAGAAAACCACAGCCTGAACCTATCACGCGACCTGCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGGTGCTACCCTTTTCAAGTTCTACTGCCATGGTGAATTCAGCTTGGAGTAGCGGACTCATTACTTCCTGTGAAAGTGGTAGACTTCACATCCACAACCAACACCAGCAAGTTCATGTGGTTGATAAACAAGATCATTTTCTTGGTTCTACTGCAACCACCTACGAAGAAGGGAAACAACTTCAATTCTTACACAATGACAACAACAATCCCTCACTTCATAGCCAAACCACACCTCTTCTTAGGACAAGTAGCAAAATGTTCTGTGATAGTTTAGCAACTTCAGTACACGAGTCACCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGATAATGGTTTGAATCAAATGGTGCAGCAGCCTCATTCAATGTCTCTTATGCAGCCCTTGGGACTGAGTCTGCATGGTAACAATAGCTTTGAGTCCATGGAAGGAGTGTTGGTCCCAAATGGGAGTGAGAGTGATCATTGTTCCTCGTTGTATAACATGGGTTCTGATGGATCACAAGGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG
Protein sequence

>Msa0428670

MEWNLKAPSWDLGGIEEATLPNIETMEESNRFGVYKMKGEFSVDLKLGQVGNSATDQSPLPLSNDAVVVSKIATPTSSSGSSKRARAMNNATLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTICGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPITRPAGSFLSNYQGTQVLPFSSSTAMVNSAWSSGLITSCESGRLHIHNQHQQVHVVDKQDHFLGSTATTYEEGKQLQFLHNDNNNPSLHSQTTPLLRTSSKMFCDSLATSVHESPCALSLLSSSQTHTPDNGLNQMVQQPHSMSLMQPLGLSLHGNNSFESMEGVLVPNGSESDHCSSLYNMGSDGSQGNDAPQLFPYQWE*