AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1267220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267220 MtrunA17_Chr4g0076551 91.964 224 2 2 1 223 1 209 3.96e-147 409
Msa1267220 MtrunA17_Chr5g0446931 82.511 223 24 1 1 223 1 208 1.16e-132 372
Msa1267220 MtrunA17_Chr3g0102821 83.857 223 21 1 1 223 1 208 1.16e-132 372
Msa1267220 MtrunA17_Chr2g0290751 62.667 225 66 2 1 222 1 210 2.21e-101 292
Msa1267220 MtrunA17_Chr2g0290761 62.222 225 67 2 1 222 1 210 4.01e-99 286
Msa1267220 MtrunA17_Chr2g0290781 58.590 227 74 3 1 222 1 212 3.24e-91 268
Msa1267220 MtrunA17_Chr2g0290771 67.222 180 44 1 43 222 8 172 5.40e-84 248
Msa1267220 MtrunA17_Chr4g0055421 55.288 208 78 1 16 223 1 193 3.59e-78 233
Msa1267220 MtrunA17_Chr1g0151621 60.638 188 59 1 36 223 60 232 1.02e-74 226
Msa1267220 MtrunA17_Chr8g0388331 51.295 193 79 1 31 223 16 193 8.04e-67 204
Msa1267220 MtrunA17_Chr8g0346911 52.910 189 74 1 34 222 42 215 1.80e-65 202
Msa1267220 MtrunA17_Chr8g0341941 53.723 188 72 1 36 223 66 238 2.43e-63 197
Msa1267220 MtrunA17_Chr3g0126811 57.944 107 44 1 18 124 5 110 6.53e-41 135
Msa1267220 MtrunA17_Chr4g0063121 37.500 184 80 2 40 223 2 150 1.81e-36 127
Msa1267220 MtrunA17_Chr5g0399921 59.000 100 41 0 31 130 15 114 1.11e-35 122
Msa1267220 MtrunA17_Chr3g0126801 60.920 87 34 0 137 223 1 87 4.39e-35 120
Msa1267220 MtrunA17_Chr8g0388321 48.062 129 45 2 31 159 58 164 7.13e-31 111
Msa1267220 MtrunA17_Chr8g0388311 56.452 62 27 0 162 223 1 62 6.32e-18 75.5
Msa1267220 MtrunA17_Chr5g0399931 56.452 62 27 0 162 223 1 62 2.16e-16 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267220 AT5G55990.1 81.614 223 26 1 1 223 1 208 1.80e-128 362
Msa1267220 AT5G55990.2 81.614 223 26 1 1 223 1 208 1.80e-128 362
Msa1267220 AT4G26570.1 80.269 223 29 1 1 223 1 208 1.24e-127 360
Msa1267220 AT4G26570.2 78.855 227 29 2 1 223 1 212 1.64e-125 354
Msa1267220 AT4G16350.2 67.265 223 51 3 1 223 2 202 7.99e-101 292
Msa1267220 AT4G16350.1 67.265 223 51 3 1 223 2 202 7.99e-101 292
Msa1267220 AT5G47100.1 57.212 208 74 1 16 223 1 193 5.76e-80 238
Msa1267220 AT5G24270.4 55.556 198 73 1 26 223 15 197 2.21e-77 232
Msa1267220 AT5G24270.1 55.556 198 73 1 26 223 15 197 2.21e-77 232
Msa1267220 AT5G24270.2 55.556 198 73 1 26 223 15 197 2.21e-77 232
Msa1267220 AT4G17615.4 54.808 208 79 1 16 223 1 193 7.69e-77 231
Msa1267220 AT4G17615.1 54.808 208 79 1 16 223 1 193 7.69e-77 231
Msa1267220 AT4G17615.5 54.808 208 79 1 16 223 1 193 7.69e-77 231
Msa1267220 AT4G17615.3 54.808 208 79 1 16 223 1 193 4.25e-76 230
Msa1267220 AT4G26560.1 62.434 189 43 3 48 223 23 196 1.69e-75 227
Msa1267220 AT4G33000.2 56.422 218 77 3 8 223 28 229 1.91e-73 223
Msa1267220 AT4G33000.1 56.422 218 77 3 8 223 38 239 2.09e-73 223
Msa1267220 AT5G24270.5 55.978 184 66 1 40 223 4 172 4.58e-72 218
Msa1267220 AT1G64480.4 49.048 210 92 1 14 223 3 197 7.58e-69 209
Msa1267220 AT1G64480.2 49.048 210 92 1 14 223 3 197 1.78e-68 209
Msa1267220 AT1G64480.3 49.048 210 92 1 14 223 3 197 1.78e-68 209
Msa1267220 AT1G64480.1 49.048 210 92 1 14 223 3 197 1.78e-68 209
Msa1267220 AT5G47100.2 54.651 172 63 1 16 187 1 157 3.86e-60 187
Msa1267220 AT5G24270.3 52.201 159 61 1 65 223 7 150 1.34e-55 175
Msa1267220 AT4G17615.2 53.548 155 57 1 69 223 12 151 1.72e-54 172
Msa1267220 AT4G33000.4 54.144 181 65 3 8 186 28 192 4.52e-54 172
Msa1267220 AT4G33000.6 54.144 181 65 3 8 186 28 192 4.52e-54 172
Msa1267220 AT4G33000.5 54.444 180 64 3 8 185 28 191 5.16e-54 172
Msa1267220 AT4G01420.2 45.361 194 89 2 31 223 15 192 1.99e-53 170
Msa1267220 AT4G01420.1 46.316 190 85 2 35 223 19 192 2.34e-53 171
Msa1267220 AT4G33000.3 60.000 115 43 2 11 123 31 144 2.83e-37 128

Find 132 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTGCAATTGCAAATT+AGG 0.135898 8_2:-72341969 None:intergenic
TTCCTTCATTTGAGAATAAA+AGG 0.140171 8_2:+72346412 Msa1267220:three_prime_UTR
AATCAGATATGTTGTATATT+TGG 0.151988 8_2:+72346672 Msa1267220:three_prime_UTR
CCAGATAGAATAGGTGTTTC+AGG 0.171578 8_2:+72346439 Msa1267220:three_prime_UTR
TAGAACTTTGTTTCTTGTTT+TGG 0.194928 8_2:+72346345 Msa1267220:three_prime_UTR
AGATTAAAATTTGAAGATTA+TGG 0.229404 8_2:-72345726 None:intergenic
TTTAATCTCTACTATTAATA+AGG 0.234686 8_2:+72345741 Msa1267220:three_prime_UTR
CGCAGGGTTATTTGGTTGAT+TGG 0.272448 8_2:+72341940 Msa1267220:five_prime_UTR
TACTATTAATAAGGAGAATA+AGG 0.281080 8_2:+72345750 Msa1267220:three_prime_UTR
CTTACAAGAGCAAAAGAAAA+TGG 0.300800 8_2:-72346607 None:intergenic
TCTGATTTGAACTGTTTATC+TGG 0.302613 8_2:+72346119 Msa1267220:three_prime_UTR
AGGGCATTCGCAGGGTTATT+TGG 0.304508 8_2:+72341932 Msa1267220:five_prime_UTR
TATGTTTCACTTGTGAATAC+TGG 0.316101 8_2:+72346263 Msa1267220:three_prime_UTR
AAATTATTTCCTAACATGTT+AGG 0.321551 8_2:+72345684 Msa1267220:three_prime_UTR
GTAATTGCATTGGTGCTAAA+AGG 0.329031 8_2:-72346002 None:intergenic
CCTGAAACACCTATTCTATC+TGG 0.331459 8_2:-72346439 None:intergenic
CACTGAATCTTCTCATCAAT+TGG 0.343671 8_2:-72342941 None:intergenic
TCAAATTAGTAATTAGTAAC+AGG 0.351065 8_2:-72345636 None:intergenic
GATTCGTTAAATCAACCTAT+TGG 0.354642 8_2:+72342399 Msa1267220:CDS
GATCATTGAGGTTTGTAGAT+TGG 0.356248 8_2:+72346367 Msa1267220:three_prime_UTR
AGGTTTGTAGATTGGACAAA+TGG 0.362022 8_2:+72346375 Msa1267220:three_prime_UTR
AGGAGAGCTTATTTGCAGAT+AGG 0.369093 8_2:+72342705 Msa1267220:CDS
GAGCCCATGACCTGAGTTGA+TGG 0.371472 8_2:+72346553 Msa1267220:three_prime_UTR
ACAACATATCTGATTTGTTA+TGG 0.375341 8_2:-72346664 None:intergenic
ATACCATTGTGTTCATTCAT+AGG 0.376364 8_2:+72345959 Msa1267220:three_prime_UTR
TTCTCATCAATTGGTGCGTT+GGG 0.382752 8_2:-72342932 None:intergenic
TAGTAATGCATAAACTTGTT+GGG 0.382953 8_2:+72343074 Msa1267220:intron
ATGATTTGGTCTAACTGAAA+TGG 0.385287 8_2:+72341794 Msa1267220:five_prime_UTR
GCTGTTTGAGATCATACAAT+TGG 0.386165 8_2:-72343129 None:intergenic
CAAACAAATCCTAACATGTT+AGG 0.390734 8_2:-72345693 None:intergenic
CTAACTGAAATGGACAAGTA+TGG 0.391065 8_2:+72341804 Msa1267220:five_prime_UTR
TGATGATGGACTAATTAATA+AGG 0.392383 8_2:+72342521 Msa1267220:CDS
AGAAAATGGAAGGGAAATGT+TGG 0.404679 8_2:-72346593 None:intergenic
GAGGAGGTGCTAAGCTAAGC+AGG 0.406939 8_2:+72341868 Msa1267220:five_prime_UTR
CCATACGGAGGGAGGGAGGG+AGG 0.407545 8_2:+72341912 Msa1267220:five_prime_UTR
TTTATGAATGTCTAAAATCA+AGG 0.412566 8_2:+72346752 Msa1267220:three_prime_UTR
GTAGTAATGCATAAACTTGT+TGG 0.431668 8_2:+72343073 Msa1267220:intron
GTGGCCACTCTAGCTGAATC+TGG 0.434726 8_2:+72344836 Msa1267220:CDS
CATTAGCACTTTGGATATGT+TGG 0.437065 8_2:+72346469 Msa1267220:three_prime_UTR
AAATAGAATAAAATATGTAT+TGG 0.440701 8_2:-72346056 None:intergenic
TCTGGAAGAGGAAGAGATAA+TGG 0.446819 8_2:+72342317 Msa1267220:exon
GGAGAGCTTATTTGCAGATA+GGG 0.447151 8_2:+72342706 Msa1267220:CDS
CCTCCCTCCCTCCCTCCGTA+TGG 0.448366 8_2:-72341912 None:intergenic
AAAGTCTAGTGCAATGGCTT+GGG 0.451220 8_2:+72346510 Msa1267220:three_prime_UTR
CTTCTCATCAATTGGTGCGT+TGG 0.454509 8_2:-72342933 None:intergenic
GGGTTATTTGGTTGATTGGT+TGG 0.455523 8_2:+72341944 Msa1267220:five_prime_UTR
CTCCCTCCCTCCCTCCGTAT+GGG 0.463516 8_2:-72341911 None:intergenic
TATGCTAATACAGACATTTG+AGG 0.463715 8_2:+72345499 Msa1267220:intron
AAGAGAGAGGGTAATATTGT+GGG 0.466125 8_2:-72342006 None:intergenic
AAAGAGAGAGGGTAATATTG+TGG 0.466320 8_2:-72342007 None:intergenic
TCCCTCCCTCCGTATGGGAA+TGG 0.471690 8_2:-72341906 None:intergenic
GTCTCTCTTGCAAGAAGTTG+TGG 0.471933 8_2:-72342432 None:intergenic
TTATGTGTAGGTAAAACAAA+TGG 0.480528 8_2:+72344811 Msa1267220:intron
AAAAGTCTAGTGCAATGGCT+TGG 0.483521 8_2:+72346509 Msa1267220:three_prime_UTR
ATGAATGGGGATAAATATGA+AGG 0.484648 8_2:-72345888 None:intergenic
GGGATAAATATGAAGGGAAA+AGG 0.485909 8_2:-72345881 None:intergenic
GGTTTGTAGATTGGACAAAT+GGG 0.487395 8_2:+72346376 Msa1267220:three_prime_UTR
TTTGTTGAAGGATGCAGTCC+GGG 0.487420 8_2:+72346289 Msa1267220:three_prime_UTR
GAGGGAGGGAGGGCATTCGC+AGG 0.488103 8_2:+72341923 Msa1267220:five_prime_UTR
CACGTGTAATAAATAATGAT+TGG 0.488526 8_2:+72341837 Msa1267220:five_prime_UTR
GAAAATGGAAGGGAAATGTT+GGG 0.490932 8_2:-72346592 None:intergenic
TGTTTGATACAAAGCACAAT+GGG 0.493205 8_2:+72342864 Msa1267220:CDS
ATGTTTCACTTGTGAATACT+GGG 0.494013 8_2:+72346264 Msa1267220:three_prime_UTR
TAGGCTCATGTAGCTGCCTC+AGG 0.498515 8_2:-72346198 None:intergenic
AAAGGGAAACCAGATAGAAT+AGG 0.512971 8_2:+72346430 Msa1267220:three_prime_UTR
TTAGGAAATAATTTACTCCC+TGG 0.513615 8_2:-72345675 None:intergenic
GAGGAGTGATGAGAATGAAT+GGG 0.515244 8_2:-72345902 None:intergenic
GAAGCTGATACAAAACATGA+TGG 0.519793 8_2:+72345521 Msa1267220:CDS
TGAGGAGTGATGAGAATGAA+TGG 0.520028 8_2:-72345903 None:intergenic
TCCTTCATTTGAGAATAAAA+GGG 0.522994 8_2:+72346413 Msa1267220:three_prime_UTR
TTTCTGGTCTTGAATACCAA+TGG 0.529019 8_2:+72346238 Msa1267220:three_prime_UTR
AGCAGTGCAGTCATTGATGA+TGG 0.530790 8_2:+72342507 Msa1267220:CDS
GCTGCCATCAACTCAGGTCA+TGG 0.533005 8_2:-72346557 None:intergenic
CAAGAGCAAAAGAAAATGGA+AGG 0.535512 8_2:-72346603 None:intergenic
AATACTTTCGACCACGTCAT+CGG 0.537540 8_2:-72344870 None:intergenic
CAATCAGAAGGTAATTGCAT+TGG 0.538254 8_2:-72346012 None:intergenic
ATTAATAAGGAGAATAAGGT+GGG 0.538352 8_2:+72345754 Msa1267220:three_prime_UTR
GGAAGATTGACAAGGAAGAA+TGG 0.543897 8_2:+72345543 Msa1267220:CDS
TTCCCATACGGAGGGAGGGA+GGG 0.544577 8_2:+72341909 Msa1267220:five_prime_UTR
CATACGGAGGGAGGGAGGGA+GGG 0.544727 8_2:+72341913 Msa1267220:five_prime_UTR
AAAAGTGACATGGATGATGT+AGG 0.546445 8_2:-72346217 None:intergenic
AACAAGATCTAGATCTATCC+CGG 0.552594 8_2:-72346307 None:intergenic
CCCTCCATTCCATTCCCATA+CGG 0.564602 8_2:+72341897 Msa1267220:five_prime_UTR
ATGGCTTGGGCAAGCTGTGA+AGG 0.565486 8_2:+72346523 Msa1267220:three_prime_UTR
GCAGAAGCTGCCATCAACTC+AGG 0.565765 8_2:-72346563 None:intergenic
CTGCCATCAACTCAGGTCAT+GGG 0.566514 8_2:-72346556 None:intergenic
AGTAATGCATAAACTTGTTG+GGG 0.567052 8_2:+72343075 Msa1267220:intron
ACAAGTGAAACATAAACCAT+TGG 0.567165 8_2:-72346254 None:intergenic
TCCATTCCCATACGGAGGGA+GGG 0.570301 8_2:+72341905 Msa1267220:five_prime_UTR
AGGGAGGGAGGGCATTCGCA+GGG 0.572226 8_2:+72341924 Msa1267220:five_prime_UTR
GGGATGGATGCCGCAAGACA+AGG 0.573752 8_2:-72345571 None:intergenic
TTCCATTCCCATACGGAGGG+AGG 0.576796 8_2:+72341904 Msa1267220:five_prime_UTR
CCAGGACAAAATCAATCAGA+AGG 0.582635 8_2:-72346024 None:intergenic
CATACCAGATTCAGCTAGAG+TGG 0.583380 8_2:-72344840 None:intergenic
AGGAGGTGCTAAGCTAAGCA+GGG 0.585673 8_2:+72341869 Msa1267220:five_prime_UTR
ATAATGGTGCAGTGCCTAGA+CGG 0.586253 8_2:+72342333 Msa1267220:exon
ACGACAGGAAGAATTTCAGT+TGG 0.588073 8_2:+72342661 Msa1267220:intron
CTGTCAAAAGTCTAGTGCAA+TGG 0.589378 8_2:+72346504 Msa1267220:three_prime_UTR
TATTAATAAGGAGAATAAGG+TGG 0.591628 8_2:+72345753 Msa1267220:three_prime_UTR
ATTGTTCAAGTCAAACAAGA+AGG 0.597720 8_2:+72342685 Msa1267220:CDS
AAGCTGATACAAAACATGAT+GGG 0.605429 8_2:+72345522 Msa1267220:CDS
TCCGTATGGGAATGGAATGG+AGG 0.609508 8_2:-72341898 None:intergenic
ATTGGAAAGAAACTGCAAGA+AGG 0.610768 8_2:-72343111 None:intergenic
TCCATTCCATTCCCATACGG+AGG 0.611421 8_2:+72341900 Msa1267220:five_prime_UTR
AGGAGTGATGAGAATGAATG+GGG 0.611949 8_2:-72345901 None:intergenic
ATTCCCATACGGAGGGAGGG+AGG 0.613590 8_2:+72341908 Msa1267220:five_prime_UTR
CCCTCCGTATGGGAATGGAA+TGG 0.613837 8_2:-72341901 None:intergenic
TTGTTTGATACAAAGCACAA+TGG 0.615195 8_2:+72342863 Msa1267220:CDS
CCGTATGGGAATGGAATGGA+GGG 0.616096 8_2:-72341897 None:intergenic
TGAATGGGGATAAATATGAA+GGG 0.617470 8_2:-72345887 None:intergenic
ACAGATGCTTTATTCCGTCT+AGG 0.621229 8_2:-72342347 None:intergenic
CCATTCCATTCCCATACGGA+GGG 0.624120 8_2:+72341901 Msa1267220:five_prime_UTR
ATGTATTGGAGATACCATCC+AGG 0.624540 8_2:-72346042 None:intergenic
TTGTATGATCTCAAACAGCA+AGG 0.625245 8_2:+72343133 Msa1267220:CDS
TGTGTAGGTAAAACAAATGG+TGG 0.637094 8_2:+72344814 Msa1267220:intron
AAGAGCAAAAGAAAATGGAA+GGG 0.648083 8_2:-72346602 None:intergenic
AACAAAACTAGGAAATGTGG+TGG 0.655041 8_2:-72346153 None:intergenic
TATGAATCTTTCCGATGACG+TGG 0.662006 8_2:+72344859 Msa1267220:CDS
CATGTATGTATAGCTACATG+AGG 0.662327 8_2:-72345921 None:intergenic
TGGACAAGTATGGAGTGAAG+AGG 0.665142 8_2:+72341814 Msa1267220:five_prime_UTR
AATGGCGAAACCTTGTCTTG+CGG 0.669293 8_2:+72345561 Msa1267220:CDS
GTAGGTAAAACAAATGGTGG+TGG 0.669780 8_2:+72344817 Msa1267220:intron
AATCTCACTTACACTAAACA+CGG 0.670140 8_2:-72342454 None:intergenic
ATGAATGTCTAAAATCAAGG+TGG 0.670685 8_2:+72346755 Msa1267220:three_prime_UTR
GGTCGAAAGTATTATCGACA+AGG 0.681005 8_2:+72344880 Msa1267220:CDS
GGAGGTGCTAAGCTAAGCAG+GGG 0.696721 8_2:+72341870 Msa1267220:five_prime_UTR
TCGCAAGTTGATGATACCTG+AGG 0.697660 8_2:+72346182 Msa1267220:three_prime_UTR
ACATGATGGGAAGATTGACA+AGG 0.700088 8_2:+72345535 Msa1267220:CDS
ACTCCTATGAATGAACACAA+TGG 0.707882 8_2:-72345962 None:intergenic
ATAATGATTGGTGAACAGTG+AGG 0.720539 8_2:+72341849 Msa1267220:five_prime_UTR
ATGATTGGTGAACAGTGAGG+AGG 0.744175 8_2:+72341852 Msa1267220:five_prime_UTR
GAGGTGCTAAGCTAAGCAGG+GGG 0.777397 8_2:+72341871 Msa1267220:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTAACTATGATATA+TGG - chr8_2:72345254-72345273 None:intergenic 10.0%
!! ATAATTAAAAAATACAGTTT+CGG - chr8_2:72345842-72345861 None:intergenic 10.0%
!! AAATAGAATAAAATATGTAT+TGG - chr8_2:72346059-72346078 None:intergenic 10.0%
!!! ATTTTGATGAATGAAAATAA+GGG - chr8_2:72342075-72342094 None:intergenic 15.0%
!! AAATATAGTAATAATCAATC+AGG - chr8_2:72342124-72342143 None:intergenic 15.0%
!! TATAAAATGAATCATAAACT+TGG - chr8_2:72342823-72342842 None:intergenic 15.0%
!!! TTCATTTTATATACTTATGT+AGG + chr8_2:72342832-72342851 Msa1267220:intron 15.0%
!!! ATTTACTCAACAATTTTATT+TGG + chr8_2:72342978-72342997 Msa1267220:intron 15.0%
!!! AATTTTATTTGGATATTGAA+TGG + chr8_2:72342989-72343008 Msa1267220:intron 15.0%
!!! TGTATTAACTTGAATAAATA+TGG + chr8_2:72343191-72343210 Msa1267220:intron 15.0%
!!! AAAATTTTCTGTTAAATCAT+CGG - chr8_2:72343974-72343993 None:intergenic 15.0%
!! ATATCATAGTTAATTATTAG+TGG + chr8_2:72345255-72345274 Msa1267220:intron 15.0%
!! AGATTAAAATTTGAAGATTA+TGG - chr8_2:72345729-72345748 None:intergenic 15.0%
!! TTTAATCTCTACTATTAATA+AGG + chr8_2:72345741-72345760 Msa1267220:three_prime_UTR 15.0%
!! TAATTAAAAAATACAGTTTC+GGG - chr8_2:72345841-72345860 None:intergenic 15.0%
!!! GATTTTGATGAATGAAAATA+AGG - chr8_2:72342076-72342095 None:intergenic 20.0%
!!! AATCAATCAGGATTTAAAAT+TGG - chr8_2:72342112-72342131 None:intergenic 20.0%
!!! CGTATACATTTTTTTTTACA+TGG + chr8_2:72342188-72342207 Msa1267220:intron 20.0%
!! TAATCGTCTATTTATTGTTA+TGG + chr8_2:72343050-72343069 Msa1267220:intron 20.0%
!! AATCGTCTATTTATTGTTAT+GGG + chr8_2:72343051-72343070 Msa1267220:intron 20.0%
!! ATCACTACTTTATATTGTTT+AGG + chr8_2:72343237-72343256 Msa1267220:intron 20.0%
!!! TTGAGTTTTAATAGATTGAT+TGG + chr8_2:72343420-72343439 Msa1267220:intron 20.0%
!! TGAAACTGTATATTATTTCA+TGG - chr8_2:72343722-72343741 None:intergenic 20.0%
!! ATAGAAAAATACAGCTTAAA+AGG - chr8_2:72344336-72344355 None:intergenic 20.0%
!! TTTCTATAGATTGAACTTTA+AGG + chr8_2:72344349-72344368 Msa1267220:intron 20.0%
!! TTCTATAGATTGAACTTTAA+GGG + chr8_2:72344350-72344369 Msa1267220:intron 20.0%
!! CATAAATAAAAAGCAGAAAA+AGG - chr8_2:72345002-72345021 None:intergenic 20.0%
!!! TGTTATTTTAGTTTTTTTGC+TGG + chr8_2:72345020-72345039 Msa1267220:intron 20.0%
!! TACTTAAAATTTGGAAACAA+AGG - chr8_2:72345204-72345223 None:intergenic 20.0%
!! TCAAATTAGTAATTAGTAAC+AGG - chr8_2:72345639-72345658 None:intergenic 20.0%
!! AAATTATTTCCTAACATGTT+AGG + chr8_2:72345684-72345703 Msa1267220:three_prime_UTR 20.0%
!! TACTATTAATAAGGAGAATA+AGG + chr8_2:72345750-72345769 Msa1267220:three_prime_UTR 20.0%
!!! GTTTTAACAAACATTTGAAA+TGG - chr8_2:72345819-72345838 None:intergenic 20.0%
!! AATCAGATATGTTGTATATT+TGG + chr8_2:72346672-72346691 Msa1267220:three_prime_UTR 20.0%
!!! TTGTAATTATCATTTTTGCA+TGG + chr8_2:72346695-72346714 Msa1267220:three_prime_UTR 20.0%
!!! TGTAATTATCATTTTTGCAT+GGG + chr8_2:72346696-72346715 Msa1267220:three_prime_UTR 20.0%
! CACGTGTAATAAATAATGAT+TGG + chr8_2:72341837-72341856 Msa1267220:five_prime_UTR 25.0%
! AAAAAAAAATGTATACGTCC+AGG - chr8_2:72342185-72342204 None:intergenic 25.0%
! GTTAATTCTTGAAACATTTG+TGG + chr8_2:72342268-72342287 Msa1267220:intron 25.0%
!!! TGATGATGGACTAATTAATA+AGG + chr8_2:72342521-72342540 Msa1267220:CDS 25.0%
!!! TTTTTTTCATTTCCACCTTA+TGG + chr8_2:72342756-72342775 Msa1267220:intron 25.0%
!!! TATTGTTTTTTCCTTCCATA+AGG - chr8_2:72342774-72342793 None:intergenic 25.0%
! ACTTGGCAAATAAATTGATA+AGG - chr8_2:72342806-72342825 None:intergenic 25.0%
! TATTTGGATATTGAATGGAA+AGG + chr8_2:72342994-72343013 Msa1267220:intron 25.0%
! ATTTGGATATTGAATGGAAA+GGG + chr8_2:72342995-72343014 Msa1267220:intron 25.0%
!! TAGTAATGCATAAACTTGTT+GGG + chr8_2:72343074-72343093 Msa1267220:intron 25.0%
! TATAAAGTAGTGATCTAATG+TGG - chr8_2:72343231-72343250 None:intergenic 25.0%
!! AATATTGTTGAGAGTTTGTT+AGG + chr8_2:72343584-72343603 Msa1267220:intron 25.0%
! ATTAGCATGTATTTGATACT+AGG + chr8_2:72344129-72344148 Msa1267220:intron 25.0%
! TAAGAGAGAAGAAAATGTTT+GGG - chr8_2:72344376-72344395 None:intergenic 25.0%
! TTAAGAGAGAAGAAAATGTT+TGG - chr8_2:72344377-72344396 None:intergenic 25.0%
! AAGGAGAAATAAAAAACGAA+AGG - chr8_2:72344580-72344599 None:intergenic 25.0%
! TCATCAATGCATATAAATCT+AGG - chr8_2:72344782-72344801 None:intergenic 25.0%
! TTTACCTACACATAAAAACA+AGG - chr8_2:72344806-72344825 None:intergenic 25.0%
! TTATGTGTAGGTAAAACAAA+TGG + chr8_2:72344811-72344830 Msa1267220:intron 25.0%
!!! TGATAATGGTCATATAGATT+TGG - chr8_2:72344938-72344957 None:intergenic 25.0%
! GTACATTTGAATCATGTTAT+AGG + chr8_2:72344965-72344984 Msa1267220:intron 25.0%
! AAGGGCAAATACTTAAAATT+TGG - chr8_2:72345213-72345232 None:intergenic 25.0%
!!! AAGAGTCATATTTTTCAGAA+GGG - chr8_2:72345594-72345613 None:intergenic 25.0%
! TATTAATAAGGAGAATAAGG+TGG + chr8_2:72345753-72345772 Msa1267220:three_prime_UTR 25.0%
! ATTAATAAGGAGAATAAGGT+GGG + chr8_2:72345754-72345773 Msa1267220:three_prime_UTR 25.0%
!!! CATAGGAGTTTTGTTTAAAA+CGG + chr8_2:72345976-72345995 Msa1267220:three_prime_UTR 25.0%
! AAAAACAAAACTAGGAAATG+TGG - chr8_2:72346159-72346178 None:intergenic 25.0%
!!! TAGAACTTTGTTTCTTGTTT+TGG + chr8_2:72346345-72346364 Msa1267220:three_prime_UTR 25.0%
! TTCCTTCATTTGAGAATAAA+AGG + chr8_2:72346412-72346431 Msa1267220:three_prime_UTR 25.0%
! TCCTTCATTTGAGAATAAAA+GGG + chr8_2:72346413-72346432 Msa1267220:three_prime_UTR 25.0%
!!! ACAACATATCTGATTTGTTA+TGG - chr8_2:72346667-72346686 None:intergenic 25.0%
!! ATGATTTGGTCTAACTGAAA+TGG + chr8_2:72341794-72341813 Msa1267220:five_prime_UTR 30.0%
TGCAATTGCAATTGCAAATT+AGG - chr8_2:72341972-72341991 None:intergenic 30.0%
TCATCAAAAAGAAAGAGAGA+GGG - chr8_2:72342021-72342040 None:intergenic 30.0%
TTCATCAAAAAGAAAGAGAG+AGG - chr8_2:72342022-72342041 None:intergenic 30.0%
! CTCTCTTTCTTTTTGATGAA+AGG + chr8_2:72342022-72342041 Msa1267220:five_prime_UTR 30.0%
! CTTTCTTTTTGATGAAAGGT+TGG + chr8_2:72342026-72342045 Msa1267220:intron 30.0%
TTGATGAATGAAAATAAGGG+AGG - chr8_2:72342072-72342091 None:intergenic 30.0%
TGCAGTAATAACTGAAGAAT+TGG - chr8_2:72342153-72342172 None:intergenic 30.0%
TGAAACATTTGTGGAATTAC+AGG + chr8_2:72342277-72342296 Msa1267220:intron 30.0%
GATTCGTTAAATCAACCTAT+TGG + chr8_2:72342399-72342418 Msa1267220:CDS 30.0%
! TGTGGATTTTGTAAACCAAT+AGG - chr8_2:72342417-72342436 None:intergenic 30.0%
AATCTCACTTACACTAAACA+CGG - chr8_2:72342457-72342476 None:intergenic 30.0%
TCAGCTATGATAGAACATTA+TGG + chr8_2:72342544-72342563 Msa1267220:intron 30.0%
GTTGTTGTATACTTGTATGA+TGG + chr8_2:72342624-72342643 Msa1267220:intron 30.0%
!!! GTTTTCTTATTTTACACGAC+AGG + chr8_2:72342646-72342665 Msa1267220:intron 30.0%
ATTGTTCAAGTCAAACAAGA+AGG + chr8_2:72342685-72342704 Msa1267220:CDS 30.0%
TTGTTTGATACAAAGCACAA+TGG + chr8_2:72342863-72342882 Msa1267220:CDS 30.0%
TGTTTGATACAAAGCACAAT+GGG + chr8_2:72342864-72342883 Msa1267220:CDS 30.0%
GTAGTAATGCATAAACTTGT+TGG + chr8_2:72343073-72343092 Msa1267220:intron 30.0%
!! AGTAATGCATAAACTTGTTG+GGG + chr8_2:72343075-72343094 Msa1267220:intron 30.0%
AACTGCAAGAAGGAAAAATT+GGG - chr8_2:72343104-72343123 None:intergenic 30.0%
AAACTGCAAGAAGGAAAAAT+TGG - chr8_2:72343105-72343124 None:intergenic 30.0%
AAAACAAATTACGCAAGTGA+AGG - chr8_2:72343314-72343333 None:intergenic 30.0%
! GTGTATTTTCAAATTGCTTG+TGG + chr8_2:72343360-72343379 Msa1267220:intron 30.0%
TTAAAACTCAAGAGCTAGTA+TGG - chr8_2:72343411-72343430 None:intergenic 30.0%
GAAACAATTATAAGAGGGAT+AGG + chr8_2:72343545-72343564 Msa1267220:intron 30.0%
TCATATATGATAACCTGTTC+AGG + chr8_2:72343820-72343839 Msa1267220:intron 30.0%
!! CTTTTGTTTAATTCCTGAAC+AGG - chr8_2:72343836-72343855 None:intergenic 30.0%
AATCACTATGAACTTCATCT+AGG - chr8_2:72343941-72343960 None:intergenic 30.0%
TACAACGTGTTTATGGTATT+AGG + chr8_2:72344068-72344087 Msa1267220:intron 30.0%
GTAATACAAGTAAAAGCCTA+TGG + chr8_2:72344281-72344300 Msa1267220:intron 30.0%
! ACCATAAAGTAAGTGTTTTC+CGG - chr8_2:72344508-72344527 None:intergenic 30.0%
!!! TGATCCTTGTTTTTATGTGT+AGG + chr8_2:72344799-72344818 Msa1267220:intron 30.0%
TATATGACCATTATCAGACT+AGG + chr8_2:72344942-72344961 Msa1267220:intron 30.0%
ATATGACCATTATCAGACTA+GGG + chr8_2:72344943-72344962 Msa1267220:intron 30.0%
!!! TAGTTTTTTTGCTGGTTACT+TGG + chr8_2:72345028-72345047 Msa1267220:intron 30.0%
! AGTCTCTAAAAGCAATCTTA+TGG + chr8_2:72345093-72345112 Msa1267220:intron 30.0%
GAAGCATGTAAACAAACTAT+AGG + chr8_2:72345115-72345134 Msa1267220:intron 30.0%
TACTGAATTTCAAACAATGC+AGG - chr8_2:72345152-72345171 None:intergenic 30.0%
! TTAAGTATTTGCCCTTTTGT+TGG + chr8_2:72345217-72345236 Msa1267220:intron 30.0%
GTTATTCTTGTGAACTTCAT+AGG + chr8_2:72345372-72345391 Msa1267220:intron 30.0%
!!! TTGACGTAGTTTTATGTGTA+TGG + chr8_2:72345395-72345414 Msa1267220:intron 30.0%
TATGCTAATACAGACATTTG+AGG + chr8_2:72345499-72345518 Msa1267220:intron 30.0%
AAGCTGATACAAAACATGAT+GGG + chr8_2:72345522-72345541 Msa1267220:CDS 30.0%
!! GAAGAGTCATATTTTTCAGA+AGG - chr8_2:72345595-72345614 None:intergenic 30.0%
!!! ATTTTGAAATTCTCTCACCA+GGG + chr8_2:72345658-72345677 Msa1267220:three_prime_UTR 30.0%
TTAGGAAATAATTTACTCCC+TGG - chr8_2:72345678-72345697 None:intergenic 30.0%
CAAACAAATCCTAACATGTT+AGG - chr8_2:72345696-72345715 None:intergenic 30.0%
TGAATGGGGATAAATATGAA+GGG - chr8_2:72345890-72345909 None:intergenic 30.0%
ATGAATGGGGATAAATATGA+AGG - chr8_2:72345891-72345910 None:intergenic 30.0%
ATACCATTGTGTTCATTCAT+AGG + chr8_2:72345959-72345978 Msa1267220:three_prime_UTR 30.0%
! TCTGATTTGAACTGTTTATC+TGG + chr8_2:72346119-72346138 Msa1267220:three_prime_UTR 30.0%
!!! TTTCTTGTTTTGGATCATTG+AGG + chr8_2:72346355-72346374 Msa1267220:three_prime_UTR 30.0%
! TCCCTTTTATTCTCAAATGA+AGG - chr8_2:72346417-72346436 None:intergenic 30.0%
AAGAGCAAAAGAAAATGGAA+GGG - chr8_2:72346605-72346624 None:intergenic 30.0%
CTTACAAGAGCAAAAGAAAA+TGG - chr8_2:72346610-72346629 None:intergenic 30.0%
CTAACTGAAATGGACAAGTA+TGG + chr8_2:72341804-72341823 Msa1267220:five_prime_UTR 35.0%
ATAATGATTGGTGAACAGTG+AGG + chr8_2:72341849-72341868 Msa1267220:five_prime_UTR 35.0%
AAGAGAGAGGGTAATATTGT+GGG - chr8_2:72342009-72342028 None:intergenic 35.0%
AAAGAGAGAGGGTAATATTG+TGG - chr8_2:72342010-72342029 None:intergenic 35.0%
ATTACTGCATTGTTTGTACC+TGG + chr8_2:72342164-72342183 Msa1267220:intron 35.0%
CATTTGTGGAATTACAGGTA+TGG + chr8_2:72342282-72342301 Msa1267220:intron 35.0%
TTTCATTTCCACCTTATGGA+AGG + chr8_2:72342760-72342779 Msa1267220:intron 35.0%
!!! TGTTTTTTCCTTCCATAAGG+TGG - chr8_2:72342771-72342790 None:intergenic 35.0%
CACTGAATCTTCTCATCAAT+TGG - chr8_2:72342944-72342963 None:intergenic 35.0%
ATTGGAAAGAAACTGCAAGA+AGG - chr8_2:72343114-72343133 None:intergenic 35.0%
! GCTGTTTGAGATCATACAAT+TGG - chr8_2:72343132-72343151 None:intergenic 35.0%
TTGTATGATCTCAAACAGCA+AGG + chr8_2:72343133-72343152 Msa1267220:CDS 35.0%
!!! GCAAGGTTTTATTGAAAGAC+AGG + chr8_2:72343150-72343169 Msa1267220:CDS 35.0%
!!! AGGTTTTATTGAAAGACAGG+AGG + chr8_2:72343153-72343172 Msa1267220:CDS 35.0%
TAGATGAATCAATCCCATGT+TGG - chr8_2:72343274-72343293 None:intergenic 35.0%
! GCTAGTATGGTTTTCATCTA+CGG - chr8_2:72343398-72343417 None:intergenic 35.0%
ACCGATAGGATACTAGATTT+GGG + chr8_2:72343460-72343479 Msa1267220:intron 35.0%
CCACATTCAACACATCAATA+GGG - chr8_2:72343492-72343511 None:intergenic 35.0%
TCCACATTCAACACATCAAT+AGG - chr8_2:72343493-72343512 None:intergenic 35.0%
AGGAGGGAAACAATTATAAG+AGG + chr8_2:72343539-72343558 Msa1267220:intron 35.0%
GGAGGGAAACAATTATAAGA+GGG + chr8_2:72343540-72343559 Msa1267220:intron 35.0%
GGTGGAATAACAGAAAAGAA+AGG - chr8_2:72343671-72343690 None:intergenic 35.0%
! GATTTTACAGTTTCCATCGA+AGG + chr8_2:72343748-72343767 Msa1267220:intron 35.0%
ACTGCAATACAACGTGTTTA+TGG + chr8_2:72344061-72344080 Msa1267220:intron 35.0%
TTCCAGATAACATTGAGTAG+CGG + chr8_2:72344159-72344178 Msa1267220:intron 35.0%
! TACACCACTATCCCAATTTT+GGG - chr8_2:72344190-72344209 None:intergenic 35.0%
TAAAAGCCTATGGTACTCAA+AGG + chr8_2:72344291-72344310 Msa1267220:intron 35.0%
CTTAAACTTGTAGACCTAAC+AGG + chr8_2:72344392-72344411 Msa1267220:intron 35.0%
ATCTAGGTAGTCAATAGTTG+TGG - chr8_2:72344766-72344785 None:intergenic 35.0%
TGTGTAGGTAAAACAAATGG+TGG + chr8_2:72344814-72344833 Msa1267220:intron 35.0%
AATGTACCCTAGTCTGATAA+TGG - chr8_2:72344952-72344971 None:intergenic 35.0%
ACAAACATGCACCAACAAAA+GGG - chr8_2:72345231-72345250 None:intergenic 35.0%
TGTGCTATCATAATCTTCTC+TGG + chr8_2:72345455-72345474 Msa1267220:intron 35.0%
GAAGCTGATACAAAACATGA+TGG + chr8_2:72345521-72345540 Msa1267220:CDS 35.0%
!! GTCATATTTTTCAGAAGGGA+TGG - chr8_2:72345590-72345609 None:intergenic 35.0%
!!! GATTTTGAAATTCTCTCACC+AGG + chr8_2:72345657-72345676 Msa1267220:three_prime_UTR 35.0%
GGGATAAATATGAAGGGAAA+AGG - chr8_2:72345884-72345903 None:intergenic 35.0%
CATGTATGTATAGCTACATG+AGG - chr8_2:72345924-72345943 None:intergenic 35.0%
ACTCCTATGAATGAACACAA+TGG - chr8_2:72345965-72345984 None:intergenic 35.0%
!!! AGGAGTTTTGTTTAAAACGG+TGG + chr8_2:72345979-72345998 Msa1267220:three_prime_UTR 35.0%
!! GTAATTGCATTGGTGCTAAA+AGG - chr8_2:72346005-72346024 None:intergenic 35.0%
CAATCAGAAGGTAATTGCAT+TGG - chr8_2:72346015-72346034 None:intergenic 35.0%
AACAAAACTAGGAAATGTGG+TGG - chr8_2:72346156-72346175 None:intergenic 35.0%
TGCGAGTGAAAAACAAAACT+AGG - chr8_2:72346167-72346186 None:intergenic 35.0%
AAAAGTGACATGGATGATGT+AGG - chr8_2:72346220-72346239 None:intergenic 35.0%
!!! ATCATCCATGTCACTTTTTC+TGG + chr8_2:72346222-72346241 Msa1267220:three_prime_UTR 35.0%
!! TTTCTGGTCTTGAATACCAA+TGG + chr8_2:72346238-72346257 Msa1267220:three_prime_UTR 35.0%
! GAATACTGGGATTTTGTTGA+AGG + chr8_2:72346277-72346296 Msa1267220:three_prime_UTR 35.0%
AACAAGATCTAGATCTATCC+CGG - chr8_2:72346310-72346329 None:intergenic 35.0%
GATCATTGAGGTTTGTAGAT+TGG + chr8_2:72346367-72346386 Msa1267220:three_prime_UTR 35.0%
AGGTTTGTAGATTGGACAAA+TGG + chr8_2:72346375-72346394 Msa1267220:three_prime_UTR 35.0%
GGTTTGTAGATTGGACAAAT+GGG + chr8_2:72346376-72346395 Msa1267220:three_prime_UTR 35.0%
AAAGGGAAACCAGATAGAAT+AGG + chr8_2:72346430-72346449 Msa1267220:three_prime_UTR 35.0%
CATTAGCACTTTGGATATGT+TGG + chr8_2:72346469-72346488 Msa1267220:three_prime_UTR 35.0%
GAAAATGGAAGGGAAATGTT+GGG - chr8_2:72346595-72346614 None:intergenic 35.0%
AGAAAATGGAAGGGAAATGT+TGG - chr8_2:72346596-72346615 None:intergenic 35.0%
CAAGAGCAAAAGAAAATGGA+AGG - chr8_2:72346606-72346625 None:intergenic 35.0%
! ATTTTTGCATGGGTGTCTAT+TGG + chr8_2:72346706-72346725 Msa1267220:three_prime_UTR 35.0%
GGGTTATTTGGTTGATTGGT+TGG + chr8_2:72341944-72341963 Msa1267220:five_prime_UTR 40.0%
!!! GTATGGAGTGTTTTGACATC+TGG + chr8_2:72342299-72342318 Msa1267220:five_prime_UTR 40.0%
!!! AGTGTTTTGACATCTGGAAG+AGG + chr8_2:72342305-72342324 Msa1267220:five_prime_UTR 40.0%
TCTGGAAGAGGAAGAGATAA+TGG + chr8_2:72342317-72342336 Msa1267220:exon 40.0%
! ACAGATGCTTTATTCCGTCT+AGG - chr8_2:72342350-72342369 None:intergenic 40.0%
! CTTATCCCATTGATTGGGTT+CGG - chr8_2:72342589-72342608 None:intergenic 40.0%
! CAAGCCTTATCCCATTGATT+GGG - chr8_2:72342594-72342613 None:intergenic 40.0%
ACGACAGGAAGAATTTCAGT+TGG + chr8_2:72342661-72342680 Msa1267220:intron 40.0%
AGGAGAGCTTATTTGCAGAT+AGG + chr8_2:72342705-72342724 Msa1267220:CDS 40.0%
GGAGAGCTTATTTGCAGATA+GGG + chr8_2:72342706-72342725 Msa1267220:CDS 40.0%
AGCTTATTTGCAGATAGGGT+GGG + chr8_2:72342710-72342729 Msa1267220:intron 40.0%
TTCTCATCAATTGGTGCGTT+GGG - chr8_2:72342935-72342954 None:intergenic 40.0%
TGAATGGAAAGGGATGTACT+AGG + chr8_2:72343005-72343024 Msa1267220:intron 40.0%
AGTAGTGATCTAATGTGGTG+TGG - chr8_2:72343226-72343245 None:intergenic 40.0%
! TCAATCCCATGTTGGTTATG+TGG - chr8_2:72343266-72343285 None:intergenic 40.0%
CTCTTTGTCTAAAGACCGAT+AGG + chr8_2:72343446-72343465 Msa1267220:intron 40.0%
GACCGATAGGATACTAGATT+TGG + chr8_2:72343459-72343478 Msa1267220:intron 40.0%
GCCCAAATCTAGTATCCTAT+CGG - chr8_2:72343464-72343483 None:intergenic 40.0%
CCCTATTGATGTGTTGAATG+TGG + chr8_2:72343489-72343508 Msa1267220:intron 40.0%
TTATAAGAGGGATAGGAGAG+AGG + chr8_2:72343552-72343571 Msa1267220:intron 40.0%
ATGGATAGTGATGAGCTCAA+AGG - chr8_2:72343703-72343722 None:intergenic 40.0%
! ACACCACTATCCCAATTTTG+GGG - chr8_2:72344189-72344208 None:intergenic 40.0%
! GTACACCACTATCCCAATTT+TGG - chr8_2:72344191-72344210 None:intergenic 40.0%
!! AAGGCGTCGTGAAAAATGTA+GGG - chr8_2:72344317-72344336 None:intergenic 40.0%
!! AAAGGCGTCGTGAAAAATGT+AGG - chr8_2:72344318-72344337 None:intergenic 40.0%
GCCGGAAAACACTTACTTTA+TGG + chr8_2:72344504-72344523 Msa1267220:intron 40.0%
GTTGCTGTAAAACCCAGATT+TGG + chr8_2:72344535-72344554 Msa1267220:intron 40.0%
! CGTGATTTGTGACCAAATCT+GGG - chr8_2:72344550-72344569 None:intergenic 40.0%
! TCGTGATTTGTGACCAAATC+TGG - chr8_2:72344551-72344570 None:intergenic 40.0%
TATTTCTCCTTCCTCTCCTT+TGG + chr8_2:72344589-72344608 Msa1267220:intron 40.0%
!! GTGTATGATGTGCCACTTTA+GGG - chr8_2:72344620-72344639 None:intergenic 40.0%
!! TGTGTATGATGTGCCACTTT+AGG - chr8_2:72344621-72344640 None:intergenic 40.0%
TGTGGATAGATCCGTTATCA+TGG - chr8_2:72344748-72344767 None:intergenic 40.0%
GTAGGTAAAACAAATGGTGG+TGG + chr8_2:72344817-72344836 Msa1267220:intron 40.0%
TATGAATCTTTCCGATGACG+TGG + chr8_2:72344859-72344878 Msa1267220:CDS 40.0%
AATACTTTCGACCACGTCAT+CGG - chr8_2:72344873-72344892 None:intergenic 40.0%
!! GGTCGAAAGTATTATCGACA+AGG + chr8_2:72344880-72344899 Msa1267220:CDS 40.0%
GACAAACATGCACCAACAAA+AGG - chr8_2:72345232-72345251 None:intergenic 40.0%
GGAACTCTTATGTGTACTCT+AGG + chr8_2:72345276-72345295 Msa1267220:intron 40.0%
TAAGCTTCCGCAAAATCTCT+CGG + chr8_2:72345323-72345342 Msa1267220:intron 40.0%
! TAACTAGCCGAGAGATTTTG+CGG - chr8_2:72345333-72345352 None:intergenic 40.0%
ACAAGAATAACGCTGGAGAA+AGG - chr8_2:72345363-72345382 None:intergenic 40.0%
GAAGTTCACAAGAATAACGC+TGG - chr8_2:72345370-72345389 None:intergenic 40.0%
!! GGAGTTGATAATGACGACAT+TGG + chr8_2:72345416-72345435 Msa1267220:intron 40.0%
! ACATGATGGGAAGATTGACA+AGG + chr8_2:72345535-72345554 Msa1267220:CDS 40.0%
GGAAGATTGACAAGGAAGAA+TGG + chr8_2:72345543-72345562 Msa1267220:CDS 40.0%
AGGAGTGATGAGAATGAATG+GGG - chr8_2:72345904-72345923 None:intergenic 40.0%
GAGGAGTGATGAGAATGAAT+GGG - chr8_2:72345905-72345924 None:intergenic 40.0%
TGAGGAGTGATGAGAATGAA+TGG - chr8_2:72345906-72345925 None:intergenic 40.0%
CCAGGACAAAATCAATCAGA+AGG - chr8_2:72346027-72346046 None:intergenic 40.0%
!! CCTTCTGATTGATTTTGTCC+TGG + chr8_2:72346024-72346043 Msa1267220:three_prime_UTR 40.0%
!! CTGATTGATTTTGTCCTGGA+TGG + chr8_2:72346028-72346047 Msa1267220:three_prime_UTR 40.0%
ATGTATTGGAGATACCATCC+AGG - chr8_2:72346045-72346064 None:intergenic 40.0%
CAAGACCAGAAAAAGTGACA+TGG - chr8_2:72346230-72346249 None:intergenic 40.0%
! TTTTGTTGAAGGATGCAGTC+CGG + chr8_2:72346288-72346307 Msa1267220:three_prime_UTR 40.0%
CCTGAAACACCTATTCTATC+TGG - chr8_2:72346442-72346461 None:intergenic 40.0%
CCAGATAGAATAGGTGTTTC+AGG + chr8_2:72346439-72346458 Msa1267220:three_prime_UTR 40.0%
! GGTTTTCAGCATTAGCACTT+TGG + chr8_2:72346460-72346479 Msa1267220:three_prime_UTR 40.0%
CTGTCAAAAGTCTAGTGCAA+TGG + chr8_2:72346504-72346523 Msa1267220:three_prime_UTR 40.0%
AAAAGTCTAGTGCAATGGCT+TGG + chr8_2:72346509-72346528 Msa1267220:three_prime_UTR 40.0%
AAAGTCTAGTGCAATGGCTT+GGG + chr8_2:72346510-72346529 Msa1267220:three_prime_UTR 40.0%
! GAAGGGAAATGTTGGGTTTT+AGG - chr8_2:72346588-72346607 None:intergenic 40.0%
TGGACAAGTATGGAGTGAAG+AGG + chr8_2:72341814-72341833 Msa1267220:five_prime_UTR 45.0%
ATGATTGGTGAACAGTGAGG+AGG + chr8_2:72341852-72341871 Msa1267220:five_prime_UTR 45.0%
CGCAGGGTTATTTGGTTGAT+TGG + chr8_2:72341940-72341959 Msa1267220:five_prime_UTR 45.0%
ATAATGGTGCAGTGCCTAGA+CGG + chr8_2:72342333-72342352 Msa1267220:exon 45.0%
GTCTCTCTTGCAAGAAGTTG+TGG - chr8_2:72342435-72342454 None:intergenic 45.0%
AGCAGTGCAGTCATTGATGA+TGG + chr8_2:72342507-72342526 Msa1267220:CDS 45.0%
ATTGATTGGGTTCGGCTACA+TGG - chr8_2:72342581-72342600 None:intergenic 45.0%
ATGTAGCCGAACCCAATCAA+TGG + chr8_2:72342580-72342599 Msa1267220:intron 45.0%
TGTAGCCGAACCCAATCAAT+GGG + chr8_2:72342581-72342600 Msa1267220:intron 45.0%
CGAACCCAATCAATGGGATA+AGG + chr8_2:72342587-72342606 Msa1267220:intron 45.0%
! CCAAGCCTTATCCCATTGAT+TGG - chr8_2:72342595-72342614 None:intergenic 45.0%
CCAATCAATGGGATAAGGCT+TGG + chr8_2:72342592-72342611 Msa1267220:intron 45.0%
GAGCTTATTTGCAGATAGGG+TGG + chr8_2:72342709-72342728 Msa1267220:intron 45.0%
CTTCTCATCAATTGGTGCGT+TGG - chr8_2:72342936-72342955 None:intergenic 45.0%
GAAAGGGATGTACTAGGTAG+AGG + chr8_2:72343011-72343030 Msa1267220:intron 45.0%
AGGTCACCACATAACCAACA+TGG + chr8_2:72343257-72343276 Msa1267220:intron 45.0%
GGTCACCACATAACCAACAT+GGG + chr8_2:72343258-72343277 Msa1267220:intron 45.0%
TACACTTGCAGAAGTTGCAG+TGG - chr8_2:72343345-72343364 None:intergenic 45.0%
! ATGGTTTTCATCTACGGCCT+TGG - chr8_2:72343392-72343411 None:intergenic 45.0%
GAATGTGGAGAGTAGTGACA+CGG + chr8_2:72343504-72343523 Msa1267220:intron 45.0%
TGACACGGCACAATTCAGTT+AGG + chr8_2:72343519-72343538 Msa1267220:intron 45.0%
ACGGCACAATTCAGTTAGGA+GGG + chr8_2:72343523-72343542 Msa1267220:intron 45.0%
GTTAGGAGAGATGTTCTCTC+TGG + chr8_2:72343601-72343620 Msa1267220:intron 45.0%
AGAGATGTTCTCTCTGGTCT+AGG + chr8_2:72343607-72343626 Msa1267220:intron 45.0%
TGAGCTCAAAGGCTCTACAA+TGG - chr8_2:72343692-72343711 None:intergenic 45.0%
AAGGGTTTACAGTAGGTCAC+TGG + chr8_2:72343778-72343797 Msa1267220:intron 45.0%
AGGGTTTACAGTAGGTCACT+GGG + chr8_2:72343779-72343798 Msa1267220:intron 45.0%
TTAGGCTATAGCGACGCTAT+CGG + chr8_2:72344086-72344105 Msa1267220:intron 45.0%
! TCGGTCGCTATTGACTACTA+TGG + chr8_2:72344105-72344124 Msa1267220:intron 45.0%
AGCCGCTACTCAATGTTATC+TGG - chr8_2:72344164-72344183 None:intergenic 45.0%
AGATAACATTGAGTAGCGGC+TGG + chr8_2:72344163-72344182 Msa1267220:intron 45.0%
! GATAGTGGTGTACCACATTG+CGG + chr8_2:72344198-72344217 Msa1267220:intron 45.0%
ATAGTGGTGTACCACATTGC+GGG + chr8_2:72344199-72344218 Msa1267220:intron 45.0%
! AATTAGCTGCTGGTTGTGTG+CGG - chr8_2:72344451-72344470 None:intergenic 45.0%
TCGAGATAGAAGCTTCAAGC+CGG + chr8_2:72344486-72344505 Msa1267220:intron 45.0%
CACTTACTTTATGGTCCCTC+AGG + chr8_2:72344513-72344532 Msa1267220:intron 45.0%
! TGGGTTTTACAGCAACCTGA+GGG - chr8_2:72344531-72344550 None:intergenic 45.0%
TTAGGGTCAAACCAAAGGAG+AGG - chr8_2:72344603-72344622 None:intergenic 45.0%
!! CCACTTTAGGGTCAAACCAA+AGG - chr8_2:72344608-72344627 None:intergenic 45.0%
!! CCTTTGGTTTGACCCTAAAG+TGG + chr8_2:72344605-72344624 Msa1267220:intron 45.0%
GTGTGTCACATATAGTGGTG+CGG - chr8_2:72344683-72344702 None:intergenic 45.0%
!! ACTCGGTGTGTCACATATAG+TGG - chr8_2:72344688-72344707 None:intergenic 45.0%
ACTATATGTGACACACCGAG+TGG + chr8_2:72344687-72344706 Msa1267220:intron 45.0%
! GTGCTGCTCTTCCATGATAA+CGG + chr8_2:72344734-72344753 Msa1267220:intron 45.0%
CATACCAGATTCAGCTAGAG+TGG - chr8_2:72344843-72344862 None:intergenic 45.0%
AATGGCGAAACCTTGTCTTG+CGG + chr8_2:72345561-72345580 Msa1267220:CDS 45.0%
!! TCGCAAGTTGATGATACCTG+AGG + chr8_2:72346182-72346201 Msa1267220:three_prime_UTR 45.0%
TTTGTTGAAGGATGCAGTCC+GGG + chr8_2:72346289-72346308 Msa1267220:three_prime_UTR 45.0%
!!! TTATTATTTTTAAAATGATT+TGG + chr8_2:72341780-72341799 Msa1267220:five_prime_UTR 5.0%
!! ATTACTATATTATAATATTT+AGG + chr8_2:72343857-72343876 Msa1267220:intron 5.0%
!! TACTTTAATATAAAAATATT+TGG - chr8_2:72344264-72344283 None:intergenic 5.0%
!! AGGAGGTGCTAAGCTAAGCA+GGG + chr8_2:72341869-72341888 Msa1267220:five_prime_UTR 50.0%
CCGTATGGGAATGGAATGGA+GGG - chr8_2:72341900-72341919 None:intergenic 50.0%
CCCTCCATTCCATTCCCATA+CGG + chr8_2:72341897-72341916 Msa1267220:five_prime_UTR 50.0%
TCCGTATGGGAATGGAATGG+AGG - chr8_2:72341901-72341920 None:intergenic 50.0%
TCCATTCCATTCCCATACGG+AGG + chr8_2:72341900-72341919 Msa1267220:five_prime_UTR 50.0%
CCATTCCATTCCCATACGGA+GGG + chr8_2:72341901-72341920 Msa1267220:five_prime_UTR 50.0%
! AGGGCATTCGCAGGGTTATT+TGG + chr8_2:72341932-72341951 Msa1267220:five_prime_UTR 50.0%
ATTGCTTGTGGTCCAGTCCA+AGG + chr8_2:72343372-72343391 Msa1267220:intron 50.0%
TTTCATCTACGGCCTTGGAC+TGG - chr8_2:72343387-72343406 None:intergenic 50.0%
CACGGCACAATTCAGTTAGG+AGG + chr8_2:72343522-72343541 Msa1267220:intron 50.0%
TGAACACTCCTACCAGAGCT+AGG - chr8_2:72343635-72343654 None:intergenic 50.0%
GCTCAAAGGCTCTACAATGG+TGG - chr8_2:72343689-72343708 None:intergenic 50.0%
ACAGTTTCCATCGAAGGCCA+AGG + chr8_2:72343754-72343773 Msa1267220:intron 50.0%
CCTACTGTAAACCCTTGCCT+TGG - chr8_2:72343774-72343793 None:intergenic 50.0%
CCAAGGCAAGGGTTTACAGT+AGG + chr8_2:72343771-72343790 Msa1267220:intron 50.0%
TGGCCCCAAAATTGGGATAG+TGG + chr8_2:72344183-72344202 Msa1267220:intron 50.0%
ATAGCGACTATCCCGCAATG+TGG - chr8_2:72344213-72344232 None:intergenic 50.0%
GTAGGGCCTTTGAGTACCAT+AGG - chr8_2:72344300-72344319 None:intergenic 50.0%
CGTCACACAACACTCCTGTT+AGG - chr8_2:72344409-72344428 None:intergenic 50.0%
!! ACAGGAGTGTTGTGTGACGT+TGG + chr8_2:72344410-72344429 Msa1267220:intron 50.0%
! CTGGGTTTTACAGCAACCTG+AGG - chr8_2:72344532-72344551 None:intergenic 50.0%
GGTCAAACCAAAGGAGAGGA+AGG - chr8_2:72344599-72344618 None:intergenic 50.0%
TTGCGACAAAAACGTGGAGC+AGG - chr8_2:72344645-72344664 None:intergenic 50.0%
! TGGGTGTTGCGACAAAAACG+TGG - chr8_2:72344651-72344670 None:intergenic 50.0%
ATATAGTGGTGCGGCCAAAG+TGG - chr8_2:72344674-72344693 None:intergenic 50.0%
AGAGCAGCACAAAGCAGTGA+TGG - chr8_2:72344724-72344743 None:intergenic 50.0%
CTGCCATCAACTCAGGTCAT+GGG - chr8_2:72346559-72346578 None:intergenic 50.0%
!! GAGGAGGTGCTAAGCTAAGC+AGG + chr8_2:72341868-72341887 Msa1267220:five_prime_UTR 55.0%
!! GGAGGTGCTAAGCTAAGCAG+GGG + chr8_2:72341870-72341889 Msa1267220:five_prime_UTR 55.0%
! GAGGTGCTAAGCTAAGCAGG+GGG + chr8_2:72341871-72341890 Msa1267220:five_prime_UTR 55.0%
CCCTCCGTATGGGAATGGAA+TGG - chr8_2:72341904-72341923 None:intergenic 55.0%
TTCCATTCCCATACGGAGGG+AGG + chr8_2:72341904-72341923 Msa1267220:five_prime_UTR 55.0%
TCCATTCCCATACGGAGGGA+GGG + chr8_2:72341905-72341924 Msa1267220:five_prime_UTR 55.0%
!! TCTAGGAGCCTAGCTCTGGT+AGG + chr8_2:72343624-72343643 Msa1267220:intron 55.0%
TTCCATCGAAGGCCAAGGCA+AGG + chr8_2:72343759-72343778 Msa1267220:intron 55.0%
TCCATCGAAGGCCAAGGCAA+GGG + chr8_2:72343760-72343779 Msa1267220:intron 55.0%
! TAGCGGCTGGCCCCAAAATT+GGG + chr8_2:72344176-72344195 Msa1267220:intron 55.0%
GCAGCTGCACAATTAGCTGC+TGG - chr8_2:72344461-72344480 None:intergenic 55.0%
TGTCGCAACACCCACCACTT+TGG + chr8_2:72344657-72344676 Msa1267220:intron 55.0%
ATGGACACCACAGAGCCACT+CGG - chr8_2:72344705-72344724 None:intergenic 55.0%
GTGGCCACTCTAGCTGAATC+TGG + chr8_2:72344836-72344855 Msa1267220:CDS 55.0%
TAGGCTCATGTAGCTGCCTC+AGG - chr8_2:72346201-72346220 None:intergenic 55.0%
! ATGGCTTGGGCAAGCTGTGA+AGG + chr8_2:72346523-72346542 Msa1267220:three_prime_UTR 55.0%
! GAGCCCATGACCTGAGTTGA+TGG + chr8_2:72346553-72346572 Msa1267220:three_prime_UTR 55.0%
GCTGCCATCAACTCAGGTCA+TGG - chr8_2:72346560-72346579 None:intergenic 55.0%
GCAGAAGCTGCCATCAACTC+AGG - chr8_2:72346566-72346585 None:intergenic 55.0%
TCCCTCCCTCCGTATGGGAA+TGG - chr8_2:72341909-72341928 None:intergenic 60.0%
ATTCCCATACGGAGGGAGGG+AGG + chr8_2:72341908-72341927 Msa1267220:five_prime_UTR 60.0%
TTCCCATACGGAGGGAGGGA+GGG + chr8_2:72341909-72341928 Msa1267220:five_prime_UTR 60.0%
CTGGTCTAGGAGCCTAGCTC+TGG + chr8_2:72343620-72343639 Msa1267220:intron 60.0%
! ACCCTTGCCTTGGCCTTCGA+TGG - chr8_2:72343764-72343783 None:intergenic 60.0%
! GTAGCGGCTGGCCCCAAAAT+TGG + chr8_2:72344175-72344194 Msa1267220:intron 60.0%
AGTGGTGCGGCCAAAGTGGT+GGG - chr8_2:72344670-72344689 None:intergenic 60.0%
TAGTGGTGCGGCCAAAGTGG+TGG - chr8_2:72344671-72344690 None:intergenic 60.0%
! TGACACACCGAGTGGCTCTG+TGG + chr8_2:72344695-72344714 Msa1267220:intron 60.0%
GGGATGGATGCCGCAAGACA+AGG - chr8_2:72345574-72345593 None:intergenic 60.0%
CTCCCTCCCTCCCTCCGTAT+GGG - chr8_2:72341914-72341933 None:intergenic 65.0%
CATACGGAGGGAGGGAGGGA+GGG + chr8_2:72341913-72341932 Msa1267220:five_prime_UTR 65.0%
!! AGGGAGGGAGGGCATTCGCA+GGG + chr8_2:72341924-72341943 Msa1267220:five_prime_UTR 65.0%
CCTCCCTCCCTCCCTCCGTA+TGG - chr8_2:72341915-72341934 None:intergenic 70.0%
CCATACGGAGGGAGGGAGGG+AGG + chr8_2:72341912-72341931 Msa1267220:five_prime_UTR 70.0%
!! GAGGGAGGGAGGGCATTCGC+AGG + chr8_2:72341923-72341942 Msa1267220:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 72341767 72346774 72341767 ID=Msa1267220;Name=Msa1267220
chr8_2 mRNA 72341767 72346774 72341767 ID=Msa1267220-mRNA-1;Parent=Msa1267220;Name=Msa1267220-mRNA-1;_AED=0.20;_eAED=0.20;_QI=314|0.83|0.85|1|0.83|0.71|7|1146|223
chr8_2 exon 72341767 72342043 72341767 ID=Msa1267220-mRNA-1:exon:24454;Parent=Msa1267220-mRNA-1
chr8_2 exon 72342299 72342542 72342299 ID=Msa1267220-mRNA-1:exon:24455;Parent=Msa1267220-mRNA-1
chr8_2 exon 72342668 72342727 72342668 ID=Msa1267220-mRNA-1:exon:24456;Parent=Msa1267220-mRNA-1
chr8_2 exon 72342854 72342962 72342854 ID=Msa1267220-mRNA-1:exon:24457;Parent=Msa1267220-mRNA-1
chr8_2 exon 72343077 72343174 72343077 ID=Msa1267220-mRNA-1:exon:24458;Parent=Msa1267220-mRNA-1
chr8_2 exon 72344821 72344901 72344821 ID=Msa1267220-mRNA-1:exon:24459;Parent=Msa1267220-mRNA-1
chr8_2 exon 72345512 72346774 72345512 ID=Msa1267220-mRNA-1:exon:24460;Parent=Msa1267220-mRNA-1
chr8_2 five_prime_UTR 72341767 72342043 72341767 ID=Msa1267220-mRNA-1:five_prime_utr;Parent=Msa1267220-mRNA-1
chr8_2 five_prime_UTR 72342299 72342335 72342299 ID=Msa1267220-mRNA-1:five_prime_utr;Parent=Msa1267220-mRNA-1
chr8_2 CDS 72342336 72342542 72342336 ID=Msa1267220-mRNA-1:cds;Parent=Msa1267220-mRNA-1
chr8_2 CDS 72342668 72342727 72342668 ID=Msa1267220-mRNA-1:cds;Parent=Msa1267220-mRNA-1
chr8_2 CDS 72342854 72342962 72342854 ID=Msa1267220-mRNA-1:cds;Parent=Msa1267220-mRNA-1
chr8_2 CDS 72343077 72343174 72343077 ID=Msa1267220-mRNA-1:cds;Parent=Msa1267220-mRNA-1
chr8_2 CDS 72344821 72344901 72344821 ID=Msa1267220-mRNA-1:cds;Parent=Msa1267220-mRNA-1
chr8_2 CDS 72345512 72345628 72345512 ID=Msa1267220-mRNA-1:cds;Parent=Msa1267220-mRNA-1
chr8_2 three_prime_UTR 72345629 72346774 72345629 ID=Msa1267220-mRNA-1:three_prime_utr;Parent=Msa1267220-mRNA-1
Gene Sequence

>Msa1267220

ATGGTGCAGTGCCTAGACGGAATAAAGCATCTGTGTGCTTCTGTCGTAAATTGTTGCGATTCTGATTCGTTAAATCAACCTATTGGTTTACAAAATCCACAACTTCTTGCAAGAGAGACCGTGTTTAGTGTAAGTGAGATTGAAGCACTTTATGAACTTTTCAAGAAGATCAGCAGTGCAGTCATTGATGATGGACTAATTAATAAGGAAGAATTTCAGTTGGCATTGTTCAAGTCAAACAAGAAGGAGAGCTTATTTGCAGATAGGGTGTTTGACTTGTTTGATACAAAGCACAATGGGATACTTGATTTTGAAGAGTTTGCACGTGCTCTTTCTGTTTTTCATCCCAACGCACCAATTGATGAGAAGATTCAGTTAATGCATAAACTTGTTGGGGATTCCCAATTTTTCCTTCTTGCAGTTTCTTTCCAATTGTATGATCTCAAACAGCAAGGTTTTATTGAAAGACAGGAGGTAAAACAAATGGTGGTGGCCACTCTAGCTGAATCTGGTATGAATCTTTCCGATGACGTGGTCGAAAGTATTATCGACAAGACATTTGAGGAAGCTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCGGCATCCATCCCTTCTGAAAAATATGACTCTTCAGTATCTGAAGTGA
Protein sequence

>Msa1267220

MVQCLDGIKHLCASVVNCCDSDSLNQPIGLQNPQLLARETVFSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKSNKKESLFADRVFDLFDTKHNGILDFEEFARALSVFHPNAPIDEKIQLMHKLVGDSQFFLLAVSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLSDDVVESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLK*