Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0233300 | Msa0411020 | 0.802198 | 6.284919e-49 | -8.615850e-47 |
| Msa0411020 | Msa0431690 | 0.814543 | 1.460041e-51 | -8.615850e-47 |
| Msa0411020 | Msa0676080 | 0.802094 | 6.602199e-49 | -8.615850e-47 |
| Msa0411020 | Msa0766630 | 0.833488 | 5.181099e-56 | -8.615850e-47 |
| Msa0411020 | Msa0885280 | 0.810593 | 1.067331e-50 | -8.615850e-47 |
| Msa0411020 | Msa0897880 | 0.896386 | 3.877936e-76 | -8.615850e-47 |
| Msa0411020 | Msa0907070 | 0.800116 | 1.676147e-48 | -8.615850e-47 |
| Msa0411020 | Msa1015730 | 0.802865 | 4.579518e-49 | -8.615850e-47 |
| Msa0411020 | Msa1015790 | 0.827809 | 1.274550e-54 | -8.615850e-47 |
| Msa0411020 | Msa1075220 | -0.803656 | 3.141332e-49 | -8.615850e-47 |
| Msa0411020 | Msa1136090 | 0.814941 | 1.192103e-51 | -8.615850e-47 |
| Msa0411020 | Msa1162550 | -0.814786 | 1.290329e-51 | -8.615850e-47 |
| Msa0411020 | Msa1205130 | 0.816173 | 6.338436e-52 | -8.615850e-47 |
| Msa0411020 | Msa1249490 | 0.813582 | 2.379444e-51 | -8.615850e-47 |
| Msa0411020 | Msa1284680 | 0.808859 | 2.517811e-50 | -8.615850e-47 |
| Msa0411020 | Msa1451620 | -0.831986 | 1.222844e-55 | -8.615850e-47 |
| Msa0288100 | Msa0411020 | 0.804405 | 2.194316e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACATTTGGAATAAATATT+TGG | 0.150928 | 3_2:+53103648 | None:intergenic |
| GGAACCCACCTCTAATTTCT+AGG | 0.276414 | 3_2:+53105389 | None:intergenic |
| ATAAGATGTAGTGTGACTAT+TGG | 0.353975 | 3_2:-53103674 | Msa0411020:CDS |
| AGGGTTCATGGAGTGAAGAT+TGG | 0.357701 | 3_2:-53105490 | Msa0411020:five_prime_UTR |
| TCAACAGAAGACGCAGTATA+AGG | 0.360785 | 3_2:-53103552 | Msa0411020:intron |
| ATGTTGAAAATTAGGGTTCA+TGG | 0.363307 | 3_2:-53105502 | Msa0411020:five_prime_UTR |
| CCACTGACGTGTACTTTATA+CGG | 0.370704 | 3_2:+53101180 | None:intergenic |
| CCACTGACGTGTACTTTATA+CGG | 0.370704 | 3_2:+53103887 | None:intergenic |
| AGGTCGATTCAGATCGTGCC+TGG | 0.382523 | 3_2:-53103712 | Msa0411020:CDS |
| ATGGAGTGAAGATTGGGAAT+TGG | 0.391336 | 3_2:-53105483 | Msa0411020:five_prime_UTR |
| TAGGAGAAAGGAAAGATTGA+TGG | 0.395860 | 3_2:-53105435 | Msa0411020:five_prime_UTR |
| GGTCAGTAGTGGTATGTGGC+TGG | 0.414604 | 3_2:-53100269 | Msa0411020:CDS |
| TAAGATGTAGTGTGACTATT+GGG | 0.420715 | 3_2:-53103673 | Msa0411020:CDS |
| GGTACTATTTCTGAGGTAAC+AGG | 0.427472 | 3_2:-53101159 | Msa0411020:intron |
| GGTACTATTTCTGAGGTAAC+AGG | 0.427472 | 3_2:-53103866 | Msa0411020:intron |
| GTCAGTAGTGGTATGTGGCT+GGG | 0.427773 | 3_2:-53100268 | Msa0411020:CDS |
| GGGTTCATGGAGTGAAGATT+GGG | 0.427988 | 3_2:-53105489 | Msa0411020:five_prime_UTR |
| AAGGTTTATGCCAGTGGAAC+GGG | 0.429771 | 3_2:-53100364 | Msa0411020:CDS |
| ATCAAGAAATCAATGAAGTT+AGG | 0.436581 | 3_2:-53105454 | Msa0411020:five_prime_UTR |
| CGCAGCGGAAGCGTGGTGGC+TGG | 0.452470 | 3_2:-53103492 | Msa0411020:intron |
| ATCTCCAACCTAGAAATTAG+AGG | 0.453037 | 3_2:-53105397 | Msa0411020:intron |
| CAGATCGTGCCTGGGGTCAA+TGG | 0.465505 | 3_2:-53103703 | Msa0411020:CDS |
| AATCAATGAAGTTAGGAGAA+AGG | 0.467536 | 3_2:-53105447 | Msa0411020:five_prime_UTR |
| CACCGGTCAGTAGTGGTATG+TGG | 0.490432 | 3_2:-53100273 | Msa0411020:CDS |
| CAGAAAGTGTCCCGTTCCAC+TGG | 0.492128 | 3_2:+53100354 | None:intergenic |
| GATGAAGAAGCAGAAGTAGC+TGG | 0.504280 | 3_2:-53101204 | Msa0411020:CDS |
| GATGAAGAAGCAGAAGTAGC+TGG | 0.504280 | 3_2:-53103911 | Msa0411020:CDS |
| TTGTCCACGTTAGTGGGATA+CGG | 0.504411 | 3_2:-53100387 | Msa0411020:intron |
| CCCACCTCTAATTTCTAGGT+TGG | 0.507653 | 3_2:+53105393 | None:intergenic |
| GGTCGATTCAGATCGTGCCT+GGG | 0.521952 | 3_2:-53103711 | Msa0411020:CDS |
| CGGGACACTTTCTGTAAGGA+TGG | 0.532538 | 3_2:-53100345 | Msa0411020:CDS |
| ATGGACCGCACAATGATAAG+AGG | 0.536801 | 3_2:-53100326 | Msa0411020:CDS |
| AGTATAAGGAGTATGATGTA+AGG | 0.551415 | 3_2:-53103538 | Msa0411020:CDS |
| CGAGTTATTATACGACATGA+TGG | 0.555389 | 3_2:-53101232 | Msa0411020:CDS |
| CGAGTTATTATACGACATGA+TGG | 0.555389 | 3_2:-53103939 | Msa0411020:exon |
| AGAATGGCGCAGCGGAAGCG+TGG | 0.561003 | 3_2:-53103499 | Msa0411020:CDS |
| TATTGAATTCCATTGACCCC+AGG | 0.561063 | 3_2:+53103694 | None:intergenic |
| TCAGTAGTGGTATGTGGCTG+GGG | 0.561541 | 3_2:-53100267 | Msa0411020:CDS |
| GGAACGGGACACTTTCTGTA+AGG | 0.564660 | 3_2:-53100349 | Msa0411020:CDS |
| GTCCGGTGTTAGCCTCAGAT+AGG | 0.566996 | 3_2:-53100302 | Msa0411020:CDS |
| GCACAATGATAAGAGGAGTC+CGG | 0.584058 | 3_2:-53100319 | Msa0411020:CDS |
| CCACGTTAGTGGGATACGGA+AGG | 0.590724 | 3_2:-53100383 | Msa0411020:intron |
| GAAGGTTTATGCCAGTGGAA+CGG | 0.591286 | 3_2:-53100365 | Msa0411020:CDS |
| CGTCAGTGGTACTATTTCTG+AGG | 0.598365 | 3_2:-53101166 | Msa0411020:CDS |
| CGTCAGTGGTACTATTTCTG+AGG | 0.598365 | 3_2:-53103873 | Msa0411020:CDS |
| ATACGGAAGGTTTATGCCAG+TGG | 0.601594 | 3_2:-53100370 | Msa0411020:CDS |
| TGTGAAGAAATAAATCAGAA+TGG | 0.602193 | 3_2:-53103515 | Msa0411020:CDS |
| GTCGATTCAGATCGTGCCTG+GGG | 0.622321 | 3_2:-53103710 | Msa0411020:CDS |
| AGCCACATACCACTACTGAC+CGG | 0.625392 | 3_2:+53100271 | None:intergenic |
| ATGGCGCAGCGGAAGCGTGG+TGG | 0.629319 | 3_2:-53103496 | Msa0411020:CDS |
| TTCCTATCTGAGGCTAACAC+CGG | 0.635539 | 3_2:+53100300 | None:intergenic |
| GGACTCCTCTTATCATTGTG+CGG | 0.642761 | 3_2:+53100321 | None:intergenic |
| CCGGTGAAAATTCCTATCTG+AGG | 0.649459 | 3_2:+53100290 | None:intergenic |
| CCGTATAAAGTACACGTCAG+TGG | 0.665291 | 3_2:-53101180 | Msa0411020:CDS |
| CCGTATAAAGTACACGTCAG+TGG | 0.665291 | 3_2:-53103887 | Msa0411020:CDS |
| AATAAATCAGAATGGCGCAG+CGG | 0.707016 | 3_2:-53103507 | Msa0411020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATATTCATTGATAAA+CGG | + | chr3_2:53104829-53104848 | None:intergenic | 10.0% |
| !!! | TTTTTTTATTAAGTGATAAA+TGG | + | chr3_2:53104855-53104874 | None:intergenic | 10.0% |
| !!! | TAGATTTTTTTTTTTTTTGA+GGG | + | chr3_2:53104888-53104907 | None:intergenic | 10.0% |
| !! | ATAGAAAAATGTTGAAAATT+AGG | - | chr3_2:53100259-53100278 | Msa0411020:CDS | 15.0% |
| !! | TAGAAAAATGTTGAAAATTA+GGG | - | chr3_2:53100260-53100279 | Msa0411020:CDS | 15.0% |
| !! | GAGAAAATAATTTATATTGA+CGG | - | chr3_2:53101205-53101224 | Msa0411020:CDS | 15.0% |
| !! | AGAAAATAATTTATATTGAC+GGG | - | chr3_2:53101206-53101225 | Msa0411020:CDS | 15.0% |
| !! | TGAAATAAATATAAGGAATT+GGG | + | chr3_2:53101804-53101823 | None:intergenic | 15.0% |
| !!! | GTATATCTGAAATAAATATA+AGG | + | chr3_2:53101811-53101830 | None:intergenic | 15.0% |
| !!! | ACAATTTATTTAAAATTACG+CGG | + | chr3_2:53102465-53102484 | None:intergenic | 15.0% |
| !! | ATAGAAAAATGTTGAAAATT+AGG | - | chr3_2:53100259-53100278 | Msa0411020:CDS | 15.0% |
| !! | TAGAAAAATGTTGAAAATTA+GGG | - | chr3_2:53100260-53100279 | Msa0411020:CDS | 15.0% |
| !! | GAGAAAATAATTTATATTGA+CGG | - | chr3_2:53101205-53101224 | Msa0411020:CDS | 15.0% |
| !! | AGAAAATAATTTATATTGAC+GGG | - | chr3_2:53101206-53101225 | Msa0411020:CDS | 15.0% |
| !! | TGAAATAAATATAAGGAATT+GGG | + | chr3_2:53101804-53101823 | None:intergenic | 15.0% |
| !!! | GTATATCTGAAATAAATATA+AGG | + | chr3_2:53101811-53101830 | None:intergenic | 15.0% |
| !!! | CTAGATTTTTTTTTTTTTTG+AGG | + | chr3_2:53104889-53104908 | None:intergenic | 15.0% |
| !!! | AAAATGGATTAATGATATTA+TGG | + | chr3_2:53104975-53104994 | None:intergenic | 15.0% |
| !! | TAAATAATATTCTTCGATAT+AGG | - | chr3_2:53105186-53105205 | Msa0411020:intron | 15.0% |
| !! | AAATAATATTCTTCGATATA+GGG | - | chr3_2:53105187-53105206 | Msa0411020:intron | 15.0% |
| !!! | TATTTTTATCTACTTTGCAA+TGG | + | chr3_2:53100762-53100781 | None:intergenic | 20.0% |
| !! | ATCGATATGAAAATTATGTT+TGG | - | chr3_2:53101364-53101383 | Msa0411020:intron | 20.0% |
| !!! | GAAATGAGAAATTTTAGTTA+TGG | - | chr3_2:53101436-53101455 | Msa0411020:intron | 20.0% |
| !! | AAATTGTATAATCCCAAAAT+GGG | - | chr3_2:53101689-53101708 | Msa0411020:intron | 20.0% |
| !! | GAAATAAATATAAGGAATTG+GGG | + | chr3_2:53101803-53101822 | None:intergenic | 20.0% |
| !! | CTGAAATAAATATAAGGAAT+TGG | + | chr3_2:53101805-53101824 | None:intergenic | 20.0% |
| !!! | TGACATTTGGAATAAATATT+TGG | + | chr3_2:53102124-53102143 | None:intergenic | 20.0% |
| !!! | CAATTTATTTAAAATTACGC+GGG | + | chr3_2:53102464-53102483 | None:intergenic | 20.0% |
| !! | ATTAAATGGTTACGAATTAA+CGG | - | chr3_2:53102596-53102615 | Msa0411020:intron | 20.0% |
| !!! | TACATTTTTCCATTTTCTTT+GGG | - | chr3_2:53102717-53102736 | Msa0411020:intron | 20.0% |
| !!! | TATTTTTATCTACTTTGCAA+TGG | + | chr3_2:53100762-53100781 | None:intergenic | 20.0% |
| !! | ATCGATATGAAAATTATGTT+TGG | - | chr3_2:53101364-53101383 | Msa0411020:intron | 20.0% |
| !!! | GAAATGAGAAATTTTAGTTA+TGG | - | chr3_2:53101436-53101455 | Msa0411020:intron | 20.0% |
| !! | AAATTGTATAATCCCAAAAT+GGG | - | chr3_2:53101689-53101708 | Msa0411020:intron | 20.0% |
| !! | GAAATAAATATAAGGAATTG+GGG | + | chr3_2:53101803-53101822 | None:intergenic | 20.0% |
| !! | CTGAAATAAATATAAGGAAT+TGG | + | chr3_2:53101805-53101824 | None:intergenic | 20.0% |
| !! | ACAACAAAAAAAAAGGAAAA+TGG | + | chr3_2:53104991-53105010 | None:intergenic | 20.0% |
| !! | CTAAAACACAACAAAAAAAA+AGG | + | chr3_2:53104998-53105017 | None:intergenic | 20.0% |
| !! | TAAGATTCAACCTATTTATA+AGG | + | chr3_2:53105098-53105117 | None:intergenic | 20.0% |
| !! | CGAAAAGATAAAATATGATT+AGG | - | chr3_2:53105347-53105366 | Msa0411020:intron | 20.0% |
| ! | ATCAAGAAATCAATGAAGTT+AGG | - | chr3_2:53100315-53100334 | Msa0411020:CDS | 25.0% |
| ! | GCATTTGATTGAATTTAACA+AGG | - | chr3_2:53100531-53100550 | Msa0411020:intron | 25.0% |
| ! | TGAATTTAACAAGGATGTTA+AGG | - | chr3_2:53100540-53100559 | Msa0411020:intron | 25.0% |
| !! | GCTTTTATAGTGTTATATCA+TGG | - | chr3_2:53100584-53100603 | Msa0411020:intron | 25.0% |
| !!! | AAATTCTGAAATTTTCAGCT+TGG | - | chr3_2:53100674-53100693 | Msa0411020:intron | 25.0% |
| ! | CAAATAATGAAAAGAGACAA+AGG | - | chr3_2:53101183-53101202 | Msa0411020:CDS | 25.0% |
| !!! | AAATTTTAGTTATGGAACTC+CGG | - | chr3_2:53101444-53101463 | Msa0411020:intron | 25.0% |
| ! | ATATCTAATCTATCGTATTC+TGG | + | chr3_2:53101548-53101567 | None:intergenic | 25.0% |
| ! | GAAATTGTATAATCCCAAAA+TGG | - | chr3_2:53101688-53101707 | Msa0411020:intron | 25.0% |
| ! | TGTGAAGAAATAAATCAGAA+TGG | - | chr3_2:53102254-53102273 | Msa0411020:intron | 25.0% |
| !! | GGAATTTAAAGTTGAAAGTA+TGG | - | chr3_2:53102358-53102377 | Msa0411020:intron | 25.0% |
| ! | AAGTAAATCCTTAAATTTCG+AGG | - | chr3_2:53102404-53102423 | Msa0411020:intron | 25.0% |
| !! | AGAACGGAAATAATTTTCAA+AGG | - | chr3_2:53102502-53102521 | Msa0411020:intron | 25.0% |
| ! | ATTTAGAAATCGACGATATT+TGG | - | chr3_2:53102536-53102555 | Msa0411020:intron | 25.0% |
| ! | ATCTCGTAATATTATTCCAA+CGG | - | chr3_2:53102564-53102583 | Msa0411020:intron | 25.0% |
| !!! | ATTATGTCTTTTTCACTTGA+AGG | - | chr3_2:53102625-53102644 | Msa0411020:intron | 25.0% |
| !!! | TTATGTCTTTTTCACTTGAA+GGG | - | chr3_2:53102626-53102645 | Msa0411020:intron | 25.0% |
| ! | AGAAAATGGAAAAATGTAGA+AGG | + | chr3_2:53102715-53102734 | None:intergenic | 25.0% |
| !! | CTACATTTTTCCATTTTCTT+TGG | - | chr3_2:53102716-53102735 | Msa0411020:intron | 25.0% |
| ! | ATCTTCAATCTATTATCTCT+AGG | + | chr3_2:53102895-53102914 | None:intergenic | 25.0% |
| ! | ATCAAGAAATCAATGAAGTT+AGG | - | chr3_2:53100315-53100334 | Msa0411020:CDS | 25.0% |
| ! | GCATTTGATTGAATTTAACA+AGG | - | chr3_2:53100531-53100550 | Msa0411020:intron | 25.0% |
| ! | TGAATTTAACAAGGATGTTA+AGG | - | chr3_2:53100540-53100559 | Msa0411020:intron | 25.0% |
| !! | GCTTTTATAGTGTTATATCA+TGG | - | chr3_2:53100584-53100603 | Msa0411020:intron | 25.0% |
| !!! | AAATTCTGAAATTTTCAGCT+TGG | - | chr3_2:53100674-53100693 | Msa0411020:intron | 25.0% |
| !!! | AAATTTTAGTTATGGAACTC+CGG | - | chr3_2:53101444-53101463 | Msa0411020:intron | 25.0% |
| ! | ATATCTAATCTATCGTATTC+TGG | + | chr3_2:53101548-53101567 | None:intergenic | 25.0% |
| ! | GAAATTGTATAATCCCAAAA+TGG | - | chr3_2:53101688-53101707 | Msa0411020:intron | 25.0% |
| !! | AGGAAATGAGTTTGATAATA+TGG | + | chr3_2:53105124-53105143 | None:intergenic | 25.0% |
| ! | AAAATACTCCTATAACATAG+TGG | + | chr3_2:53105158-53105177 | None:intergenic | 25.0% |
| !! | TATTTTATCTTTTCGTCTTG+CGG | + | chr3_2:53105342-53105361 | None:intergenic | 25.0% |
| ATGTTGAAAATTAGGGTTCA+TGG | - | chr3_2:53100267-53100286 | Msa0411020:CDS | 30.0% | |
| AATCAATGAAGTTAGGAGAA+AGG | - | chr3_2:53100322-53100341 | Msa0411020:CDS | 30.0% | |
| AGGTTAATCTTAGTTGTAGA+TGG | - | chr3_2:53100560-53100579 | Msa0411020:intron | 30.0% | |
| TAAGTGATAGAGGAATTAGA+TGG | - | chr3_2:53100651-53100670 | Msa0411020:intron | 30.0% | |
| ACTATGTGCAATTTACTAAC+AGG | + | chr3_2:53100703-53100722 | None:intergenic | 30.0% | |
| ! | AGCTACGAAGCAATATTTTA+TGG | - | chr3_2:53101395-53101414 | Msa0411020:intron | 30.0% |
| ! | GCTACGAAGCAATATTTTAT+GGG | - | chr3_2:53101396-53101415 | Msa0411020:intron | 30.0% |
| ! | TTTCCGATAACAACTAGTTT+CGG | + | chr3_2:53101479-53101498 | None:intergenic | 30.0% |
| ! | TGTGTGTTAAAATTGGTGTT+GGG | + | chr3_2:53101983-53102002 | None:intergenic | 30.0% |
| ATGTGTGTTAAAATTGGTGT+TGG | + | chr3_2:53101984-53102003 | None:intergenic | 30.0% | |
| ATAAGATGTAGTGTGACTAT+TGG | - | chr3_2:53102095-53102114 | Msa0411020:intron | 30.0% | |
| TAAGATGTAGTGTGACTATT+GGG | - | chr3_2:53102096-53102115 | Msa0411020:intron | 30.0% | |
| TTTATTCCAAATGTCATGTC+TGG | - | chr3_2:53102128-53102147 | Msa0411020:intron | 30.0% | |
| ! | AGTATAAGGAGTATGATGTA+AGG | - | chr3_2:53102231-53102250 | Msa0411020:intron | 30.0% |
| AATTTCGTCCTCGAAATTTA+AGG | + | chr3_2:53102415-53102434 | None:intergenic | 30.0% | |
| TCTCGTAATATTATTCCAAC+GGG | - | chr3_2:53102565-53102584 | Msa0411020:intron | 30.0% | |
| !!! | TTTTCACTTGAAGGGTATTT+TGG | - | chr3_2:53102634-53102653 | Msa0411020:intron | 30.0% |
| TGTAGAAGGTTGTAGAAAAT+TGG | + | chr3_2:53102701-53102720 | None:intergenic | 30.0% | |
| CTAAATTAGGATTTGCATGA+AGG | + | chr3_2:53102842-53102861 | None:intergenic | 30.0% | |
| CTTCATGCAAATCCTAATTT+AGG | - | chr3_2:53102840-53102859 | Msa0411020:intron | 30.0% | |
| ACAAGCTAGAAACCTAAATT+AGG | + | chr3_2:53102855-53102874 | None:intergenic | 30.0% | |
| !! | TCTAGCTTGTTCTAATGTAA+TGG | - | chr3_2:53102865-53102884 | Msa0411020:intron | 30.0% |
| !! | CTAGCTTGTTCTAATGTAAT+GGG | - | chr3_2:53102866-53102885 | Msa0411020:intron | 30.0% |
| ATGTTGAAAATTAGGGTTCA+TGG | - | chr3_2:53100267-53100286 | Msa0411020:CDS | 30.0% | |
| AATCAATGAAGTTAGGAGAA+AGG | - | chr3_2:53100322-53100341 | Msa0411020:CDS | 30.0% | |
| AGGTTAATCTTAGTTGTAGA+TGG | - | chr3_2:53100560-53100579 | Msa0411020:intron | 30.0% | |
| TAAGTGATAGAGGAATTAGA+TGG | - | chr3_2:53100651-53100670 | Msa0411020:intron | 30.0% | |
| ACTATGTGCAATTTACTAAC+AGG | + | chr3_2:53100703-53100722 | None:intergenic | 30.0% | |
| CAAATAATGAAAAGAGACGA+AGG | - | chr3_2:53103890-53103909 | Msa0411020:CDS | 30.0% | |
| ! | AGCTACGAAGCAATATTTTA+TGG | - | chr3_2:53101395-53101414 | Msa0411020:intron | 30.0% |
| ! | GCTACGAAGCAATATTTTAT+GGG | - | chr3_2:53101396-53101415 | Msa0411020:intron | 30.0% |
| ! | TTTCCGATAACAACTAGTTT+CGG | + | chr3_2:53101479-53101498 | None:intergenic | 30.0% |
| ! | TGTGTGTTAAAATTGGTGTT+GGG | + | chr3_2:53101983-53102002 | None:intergenic | 30.0% |
| ATGTGTGTTAAAATTGGTGT+TGG | + | chr3_2:53101984-53102003 | None:intergenic | 30.0% | |
| TCGTAAAAACCTATGTTTAG+AGG | - | chr3_2:53104765-53104784 | Msa0411020:intron | 30.0% | |
| CGTAAAAACCTATGTTTAGA+GGG | - | chr3_2:53104766-53104785 | Msa0411020:intron | 30.0% | |
| TTGCCTCAAACCTTATAAAT+AGG | - | chr3_2:53105085-53105104 | Msa0411020:intron | 30.0% | |
| CAACCTATTTATAAGGTTTG+AGG | + | chr3_2:53105091-53105110 | None:intergenic | 30.0% | |
| ! | ATTTTATCTTTTCGTCTTGC+GGG | + | chr3_2:53105341-53105360 | None:intergenic | 30.0% |
| TAGGAGAAAGGAAAGATTGA+TGG | - | chr3_2:53100334-53100353 | Msa0411020:CDS | 35.0% | |
| ATCTCCAACCTAGAAATTAG+AGG | - | chr3_2:53100372-53100391 | Msa0411020:CDS | 35.0% | |
| AAATCATGCATGAGGAATGA+GGG | + | chr3_2:53100410-53100429 | None:intergenic | 35.0% | |
| TAAATCATGCATGAGGAATG+AGG | + | chr3_2:53100411-53100430 | None:intergenic | 35.0% | |
| TCATTCCTCATGCATGATTT+AGG | - | chr3_2:53100410-53100429 | Msa0411020:intron | 35.0% | |
| CATTCCTCATGCATGATTTA+GGG | - | chr3_2:53100411-53100430 | Msa0411020:intron | 35.0% | |
| AAAACCCTAAATCATGCATG+AGG | + | chr3_2:53100418-53100437 | None:intergenic | 35.0% | |
| GTCAATTGAGTAAGTGATAG+AGG | - | chr3_2:53100641-53100660 | Msa0411020:intron | 35.0% | |
| TTATCTCTCGTTGTAGCAAA+CGG | + | chr3_2:53100906-53100925 | None:intergenic | 35.0% | |
| ATAATGTAGCCTATGACGTA+CGG | - | chr3_2:53100922-53100941 | Msa0411020:intron | 35.0% | |
| TTATCTCTCGTTGTAGCAAA+CGG | + | chr3_2:53100906-53100925 | None:intergenic | 35.0% | |
| ATAATGTAGCCTATGACGTA+CGG | - | chr3_2:53100922-53100941 | Msa0411020:intron | 35.0% | |
| TTATCTCTCGTTGTAGCAAA+CGG | + | chr3_2:53100906-53100925 | None:intergenic | 35.0% | |
| ATAATGTAGCCTATGACGTA+CGG | - | chr3_2:53100922-53100941 | Msa0411020:intron | 35.0% | |
| ! | ATGGGCATTTTACTAATCGT+TGG | - | chr3_2:53101414-53101433 | Msa0411020:intron | 35.0% |
| TAGCCGAAACTAGTTGTTAT+CGG | - | chr3_2:53101473-53101492 | Msa0411020:intron | 35.0% | |
| ATGCATAACTCAGTGATCAA+GGG | + | chr3_2:53101665-53101684 | None:intergenic | 35.0% | |
| !! | TATAATCCCAAAATGGGTTG+AGG | - | chr3_2:53101695-53101714 | Msa0411020:intron | 35.0% |
| ! | TTCTAACCTCAACCCATTTT+GGG | + | chr3_2:53101704-53101723 | None:intergenic | 35.0% |
| ! | TTTCTAACCTCAACCCATTT+TGG | + | chr3_2:53101705-53101724 | None:intergenic | 35.0% |
| CGAGTTATTATACGACATGA+TGG | - | chr3_2:53101830-53101849 | Msa0411020:intron | 35.0% | |
| CCTAGCATGTGTGTTAAAAT+TGG | + | chr3_2:53101990-53102009 | None:intergenic | 35.0% | |
| !! | CCAATTTTAACACACATGCT+AGG | - | chr3_2:53101987-53102006 | Msa0411020:intron | 35.0% |
| !! | TATCCTAGGTGATTTCTAGT+AGG | - | chr3_2:53102010-53102029 | Msa0411020:intron | 35.0% |
| !! | ATCCTAGGTGATTTCTAGTA+GGG | - | chr3_2:53102011-53102030 | Msa0411020:intron | 35.0% |
| TTTCAATTTGGTATCAGAGC+AGG | - | chr3_2:53102037-53102056 | Msa0411020:intron | 35.0% | |
| !! | TATACTAGTCTGAGTTGATC+AGG | + | chr3_2:53102159-53102178 | None:intergenic | 35.0% |
| CAGAAAGAATCAGTTCGTAA+TGG | - | chr3_2:53102326-53102345 | Msa0411020:intron | 35.0% | |
| TCGAGGACGAAATTTCTTTA+AGG | - | chr3_2:53102421-53102440 | Msa0411020:intron | 35.0% | |
| CGAGGACGAAATTTCTTTAA+GGG | - | chr3_2:53102422-53102441 | Msa0411020:intron | 35.0% | |
| GAGGACGAAATTTCTTTAAG+GGG | - | chr3_2:53102423-53102442 | Msa0411020:intron | 35.0% | |
| ! | AGGACGAAATTTCTTTAAGG+GGG | - | chr3_2:53102424-53102443 | Msa0411020:intron | 35.0% |
| GTATCAGTTACATGTCAGAA+CGG | - | chr3_2:53102486-53102505 | Msa0411020:intron | 35.0% | |
| ! | ATTTAATTTCTCAAGCCCGT+TGG | + | chr3_2:53102583-53102602 | None:intergenic | 35.0% |
| ! | AACGGGCTTGAGAAATTAAA+TGG | - | chr3_2:53102582-53102601 | Msa0411020:intron | 35.0% |
| AAATGGTTACGAATTAACGG+AGG | - | chr3_2:53102599-53102618 | Msa0411020:intron | 35.0% | |
| !! | TTTTCCATTTTCTTTGGGAG+AGG | - | chr3_2:53102722-53102741 | Msa0411020:intron | 35.0% |
| ATATCCTCTCCCAAAGAAAA+TGG | + | chr3_2:53102729-53102748 | None:intergenic | 35.0% | |
| CATGAAGGATTAGAGAACTT+GGG | + | chr3_2:53102827-53102846 | None:intergenic | 35.0% | |
| TAGGAGAAAGGAAAGATTGA+TGG | - | chr3_2:53100334-53100353 | Msa0411020:CDS | 35.0% | |
| ATCTCCAACCTAGAAATTAG+AGG | - | chr3_2:53100372-53100391 | Msa0411020:CDS | 35.0% | |
| AAATCATGCATGAGGAATGA+GGG | + | chr3_2:53100410-53100429 | None:intergenic | 35.0% | |
| TAAATCATGCATGAGGAATG+AGG | + | chr3_2:53100411-53100430 | None:intergenic | 35.0% | |
| TCATTCCTCATGCATGATTT+AGG | - | chr3_2:53100410-53100429 | Msa0411020:intron | 35.0% | |
| CATTCCTCATGCATGATTTA+GGG | - | chr3_2:53100411-53100430 | Msa0411020:intron | 35.0% | |
| AAAACCCTAAATCATGCATG+AGG | + | chr3_2:53100418-53100437 | None:intergenic | 35.0% | |
| GTCAATTGAGTAAGTGATAG+AGG | - | chr3_2:53100641-53100660 | Msa0411020:intron | 35.0% | |
| TTATCTCTCGTTGTAGCAAA+CGG | + | chr3_2:53100906-53100925 | None:intergenic | 35.0% | |
| ATAATGTAGCCTATGACGTA+CGG | - | chr3_2:53100922-53100941 | Msa0411020:intron | 35.0% | |
| TTATCTCTCGTTGTAGCAAA+CGG | + | chr3_2:53100906-53100925 | None:intergenic | 35.0% | |
| ATAATGTAGCCTATGACGTA+CGG | - | chr3_2:53100922-53100941 | Msa0411020:intron | 35.0% | |
| TTATCTCTCGTTGTAGCAAA+CGG | + | chr3_2:53100906-53100925 | None:intergenic | 35.0% | |
| ATAATGTAGCCTATGACGTA+CGG | - | chr3_2:53100922-53100941 | Msa0411020:intron | 35.0% | |
| TTATCTCTCGTTGTAGCAAA+CGG | + | chr3_2:53100906-53100925 | None:intergenic | 35.0% | |
| ! | ATGGGCATTTTACTAATCGT+TGG | - | chr3_2:53101414-53101433 | Msa0411020:intron | 35.0% |
| TAGCCGAAACTAGTTGTTAT+CGG | - | chr3_2:53101473-53101492 | Msa0411020:intron | 35.0% | |
| ATGCATAACTCAGTGATCAA+GGG | + | chr3_2:53101665-53101684 | None:intergenic | 35.0% | |
| !! | TATAATCCCAAAATGGGTTG+AGG | - | chr3_2:53101695-53101714 | Msa0411020:intron | 35.0% |
| ! | TTCTAACCTCAACCCATTTT+GGG | + | chr3_2:53101704-53101723 | None:intergenic | 35.0% |
| ! | TTTCTAACCTCAACCCATTT+TGG | + | chr3_2:53101705-53101724 | None:intergenic | 35.0% |
| CGAGTTATTATACGACATGA+TGG | - | chr3_2:53101830-53101849 | Msa0411020:intron | 35.0% | |
| CCTAGCATGTGTGTTAAAAT+TGG | + | chr3_2:53101990-53102009 | None:intergenic | 35.0% | |
| !! | CCAATTTTAACACACATGCT+AGG | - | chr3_2:53101987-53102006 | Msa0411020:intron | 35.0% |
| !! | TATCCTAGGTGATTTCTAGT+AGG | - | chr3_2:53102010-53102029 | Msa0411020:intron | 35.0% |
| !! | ATCCTAGGTGATTTCTAGTA+GGG | - | chr3_2:53102011-53102030 | Msa0411020:intron | 35.0% |
| ! | GGTTTTTACGAAGTCTATGT+AGG | + | chr3_2:53104756-53104775 | None:intergenic | 35.0% |
| ATGTTGAACCCTCTAAACAT+AGG | + | chr3_2:53104777-53104796 | None:intergenic | 35.0% | |
| ATCCTCTCCTTCTATTTGAT+TGG | - | chr3_2:53105043-53105062 | Msa0411020:intron | 35.0% | |
| ATTGCAGCCAATCAAATAGA+AGG | + | chr3_2:53105053-53105072 | None:intergenic | 35.0% | |
| ! | TATTTGATTGGCTGCAATCT+AGG | - | chr3_2:53105055-53105074 | Msa0411020:intron | 35.0% |
| ! | ATTTGATTGGCTGCAATCTA+GGG | - | chr3_2:53105056-53105075 | Msa0411020:intron | 35.0% |
| TCACATGACCACTATGTTAT+AGG | - | chr3_2:53105147-53105166 | Msa0411020:intron | 35.0% | |
| ! | TCTTCGATATAGGGTTTTTG+CGG | - | chr3_2:53105196-53105215 | Msa0411020:intron | 35.0% |
| !! | TATTTTGTTGTCCACGTTAG+TGG | - | chr3_2:53105375-53105394 | Msa0411020:intron | 35.0% |
| !! | ATTTTGTTGTCCACGTTAGT+GGG | - | chr3_2:53105376-53105395 | Msa0411020:intron | 35.0% |
| ATGGAGTGAAGATTGGGAAT+TGG | - | chr3_2:53100286-53100305 | Msa0411020:CDS | 40.0% | |
| TCCAACCTAGAAATTAGAGG+TGG | - | chr3_2:53100375-53100394 | Msa0411020:CDS | 40.0% | |
| CCAACCTAGAAATTAGAGGT+GGG | - | chr3_2:53100376-53100395 | Msa0411020:CDS | 40.0% | |
| TACGTCATAGGCTACATTAC+AGG | + | chr3_2:53100869-53100888 | None:intergenic | 40.0% | |
| GTAATGTAGCCTATGACGTA+CGG | - | chr3_2:53100869-53100888 | Msa0411020:intron | 40.0% | |
| TAATGTAGCCTATGACGTAC+GGG | - | chr3_2:53100870-53100889 | Msa0411020:intron | 40.0% | |
| TAATGTAGCCTATGACGTAC+GGG | - | chr3_2:53100870-53100889 | Msa0411020:intron | 40.0% | |
| TAATGTAGCCTATGACGTAC+GGG | - | chr3_2:53100870-53100889 | Msa0411020:intron | 40.0% | |
| TAATGTAGCCTATGACGTAC+GGG | - | chr3_2:53100870-53100889 | Msa0411020:intron | 40.0% | |
| TTTCTCTTCGTTGTGGTGAA+CGG | + | chr3_2:53101076-53101095 | None:intergenic | 40.0% | |
| TACCACATTTCTCTTCGTTG+TGG | + | chr3_2:53101083-53101102 | None:intergenic | 40.0% | |
| TTTCTCTTCGTTGTGGTGAA+CGG | + | chr3_2:53101076-53101095 | None:intergenic | 40.0% | |
| TACCACATTTCTCTTCGTTG+TGG | + | chr3_2:53101083-53101102 | None:intergenic | 40.0% | |
| TATCTCTTCGTTGTGGTGAA+CGG | + | chr3_2:53101149-53101168 | None:intergenic | 40.0% | |
| ACCACAACGAAGAGATAATG+TGG | - | chr3_2:53101152-53101171 | Msa0411020:intron | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | + | chr3_2:53101156-53101175 | None:intergenic | 40.0% | |
| CATGCATAACTCAGTGATCA+AGG | + | chr3_2:53101666-53101685 | None:intergenic | 40.0% | |
| TAGAAACAGATGGTGATCCT+AGG | - | chr3_2:53101719-53101738 | Msa0411020:intron | 40.0% | |
| TTCCATCTATCCTAGGTTGT+AGG | + | chr3_2:53101758-53101777 | None:intergenic | 40.0% | |
| CCACTGACGTGTACTTTATA+CGG | + | chr3_2:53101885-53101904 | None:intergenic | 40.0% | |
| !! | GGTACTATTTCTGAGGTAAC+AGG | - | chr3_2:53101903-53101922 | Msa0411020:intron | 40.0% |
| !! | TCCTAGGTGATTTCTAGTAG+GGG | - | chr3_2:53102012-53102031 | Msa0411020:intron | 40.0% |
| !! | CTAGTAGGGGTGTTTCAATT+TGG | - | chr3_2:53102025-53102044 | Msa0411020:intron | 40.0% |
| TATTGAATTCCATTGACCCC+AGG | + | chr3_2:53102078-53102097 | None:intergenic | 40.0% | |
| TTATACTGCGTCTTCTGTTG+AGG | + | chr3_2:53102218-53102237 | None:intergenic | 40.0% | |
| TCAACAGAAGACGCAGTATA+AGG | - | chr3_2:53102217-53102236 | Msa0411020:intron | 40.0% | |
| AATAAATCAGAATGGCGCAG+CGG | - | chr3_2:53102262-53102281 | Msa0411020:intron | 40.0% | |
| !! | AGTTCGTAATGGACGTATGT+TGG | - | chr3_2:53102337-53102356 | Msa0411020:intron | 40.0% |
| ! | GGACGAAATTTCTTTAAGGG+GGG | - | chr3_2:53102425-53102444 | Msa0411020:intron | 40.0% |
| ! | CTATGCTCTCTTTTCTCTCT+CGG | - | chr3_2:53102763-53102782 | Msa0411020:intron | 40.0% |
| !! | GGTGGTGATGTTTTTGTGTT+TGG | + | chr3_2:53102789-53102808 | None:intergenic | 40.0% |
| CTTGGGAGATGAAGAATTGA+TGG | + | chr3_2:53102810-53102829 | None:intergenic | 40.0% | |
| GCATGAAGGATTAGAGAACT+TGG | + | chr3_2:53102828-53102847 | None:intergenic | 40.0% | |
| ATGGAGTGAAGATTGGGAAT+TGG | - | chr3_2:53100286-53100305 | Msa0411020:CDS | 40.0% | |
| TCCAACCTAGAAATTAGAGG+TGG | - | chr3_2:53100375-53100394 | Msa0411020:CDS | 40.0% | |
| CCAACCTAGAAATTAGAGGT+GGG | - | chr3_2:53100376-53100395 | Msa0411020:CDS | 40.0% | |
| TACGTCATAGGCTACATTAC+AGG | + | chr3_2:53100869-53100888 | None:intergenic | 40.0% | |
| GTAATGTAGCCTATGACGTA+CGG | - | chr3_2:53100869-53100888 | Msa0411020:intron | 40.0% | |
| TAATGTAGCCTATGACGTAC+GGG | - | chr3_2:53100870-53100889 | Msa0411020:intron | 40.0% | |
| TAATGTAGCCTATGACGTAC+GGG | - | chr3_2:53100870-53100889 | Msa0411020:intron | 40.0% | |
| TAATGTAGCCTATGACGTAC+GGG | - | chr3_2:53100870-53100889 | Msa0411020:intron | 40.0% | |
| TAATGTAGCCTATGACGTAC+GGG | - | chr3_2:53100870-53100889 | Msa0411020:intron | 40.0% | |
| TTTCTCTTCGTTGTGGTGAA+CGG | + | chr3_2:53101076-53101095 | None:intergenic | 40.0% | |
| TACCACATTTCTCTTCGTTG+TGG | + | chr3_2:53101083-53101102 | None:intergenic | 40.0% | |
| TTTCTCTTCGTTGTGGTGAA+CGG | + | chr3_2:53101076-53101095 | None:intergenic | 40.0% | |
| TACCACATTTCTCTTCGTTG+TGG | + | chr3_2:53101083-53101102 | None:intergenic | 40.0% | |
| TATCTCTTCGTTGTGGTGAA+CGG | + | chr3_2:53101149-53101168 | None:intergenic | 40.0% | |
| ACCACAACGAAGAGATAATG+TGG | - | chr3_2:53101152-53101171 | Msa0411020:intron | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | + | chr3_2:53101156-53101175 | None:intergenic | 40.0% | |
| CATGCATAACTCAGTGATCA+AGG | + | chr3_2:53101666-53101685 | None:intergenic | 40.0% | |
| TAGAAACAGATGGTGATCCT+AGG | - | chr3_2:53101719-53101738 | Msa0411020:intron | 40.0% | |
| TTCCATCTATCCTAGGTTGT+AGG | + | chr3_2:53101758-53101777 | None:intergenic | 40.0% | |
| CCACTGACGTGTACTTTATA+CGG | + | chr3_2:53101885-53101904 | None:intergenic | 40.0% | |
| !! | GGTACTATTTCTGAGGTAAC+AGG | - | chr3_2:53101903-53101922 | Msa0411020:intron | 40.0% |
| !! | TCCTAGGTGATTTCTAGTAG+GGG | - | chr3_2:53102012-53102031 | Msa0411020:intron | 40.0% |
| AGCCAATCAAATAGAAGGAG+AGG | + | chr3_2:53105048-53105067 | None:intergenic | 40.0% | |
| ACATAGTGGTCATGTGATGA+AGG | + | chr3_2:53105144-53105163 | None:intergenic | 40.0% | |
| ! | ATTTTCGTTGTCCATGCTAG+TGG | - | chr3_2:53105267-53105286 | Msa0411020:intron | 40.0% |
| ! | TTTTCGTTGTCCATGCTAGT+GGG | - | chr3_2:53105268-53105287 | Msa0411020:intron | 40.0% |
| ! | CCTCAGATAGGAATTTTCAC+CGG | - | chr3_2:53105479-53105498 | Msa0411020:five_prime_UTR | 40.0% |
| AGGGTTCATGGAGTGAAGAT+TGG | - | chr3_2:53100279-53100298 | Msa0411020:CDS | 45.0% | |
| GGGTTCATGGAGTGAAGATT+GGG | - | chr3_2:53100280-53100299 | Msa0411020:CDS | 45.0% | |
| ! | CCCACCTCTAATTTCTAGGT+TGG | + | chr3_2:53100379-53100398 | None:intergenic | 45.0% |
| GGAACCCACCTCTAATTTCT+AGG | + | chr3_2:53100383-53100402 | None:intergenic | 45.0% | |
| TGCATGAGGAATGAGGGAAT+GGG | + | chr3_2:53100404-53100423 | None:intergenic | 45.0% | |
| ATGCATGAGGAATGAGGGAA+TGG | + | chr3_2:53100405-53100424 | None:intergenic | 45.0% | |
| TACTATGACCCGTACGTCAT+AGG | + | chr3_2:53100881-53100900 | None:intergenic | 45.0% | |
| TACTATGACCCGTACGTCAT+AGG | + | chr3_2:53100881-53100900 | None:intergenic | 45.0% | |
| TACTATGACCCGTACGTCAT+AGG | + | chr3_2:53100881-53100900 | None:intergenic | 45.0% | |
| TACTATGACCCGTACGTCAT+AGG | + | chr3_2:53100881-53100900 | None:intergenic | 45.0% | |
| CACCACAACGAAGAGAAATG+TGG | - | chr3_2:53101078-53101097 | Msa0411020:intron | 45.0% | |
| CACCACAACGAAGAGAAATG+TGG | - | chr3_2:53101078-53101097 | Msa0411020:intron | 45.0% | |
| CTAGTTTCGGCTAACTAAGC+CGG | + | chr3_2:53101466-53101485 | None:intergenic | 45.0% | |
| GGGTTGAGGTTAGAAACAGA+TGG | - | chr3_2:53101709-53101728 | Msa0411020:intron | 45.0% | |
| TGCCTACAACCTAGGATAGA+TGG | - | chr3_2:53101753-53101772 | Msa0411020:intron | 45.0% | |
| CAGTGAGTTCCATCTATCCT+AGG | + | chr3_2:53101765-53101784 | None:intergenic | 45.0% | |
| GATGAAGAAGCAGAAGTAGC+TGG | - | chr3_2:53101858-53101877 | Msa0411020:intron | 45.0% | |
| CCGTATAAAGTACACGTCAG+TGG | - | chr3_2:53101882-53101901 | Msa0411020:intron | 45.0% | |
| !! | CGTCAGTGGTACTATTTCTG+AGG | - | chr3_2:53101896-53101915 | Msa0411020:intron | 45.0% |
| ACACACATGCTAGGTATCCT+AGG | - | chr3_2:53101996-53102015 | Msa0411020:intron | 45.0% | |
| ACCCCTACTAGAAATCACCT+AGG | + | chr3_2:53102016-53102035 | None:intergenic | 45.0% | |
| ! | GAGAGAAAAGAGAGCATAGG+AGG | + | chr3_2:53102762-53102781 | None:intergenic | 45.0% |
| ! | CGAGAGAGAAAAGAGAGCAT+AGG | + | chr3_2:53102765-53102784 | None:intergenic | 45.0% |
| GGGAGATGAAGAATTGATGG+TGG | + | chr3_2:53102807-53102826 | None:intergenic | 45.0% | |
| AGGGTTCATGGAGTGAAGAT+TGG | - | chr3_2:53100279-53100298 | Msa0411020:CDS | 45.0% | |
| GGGTTCATGGAGTGAAGATT+GGG | - | chr3_2:53100280-53100299 | Msa0411020:CDS | 45.0% | |
| ! | CCCACCTCTAATTTCTAGGT+TGG | + | chr3_2:53100379-53100398 | None:intergenic | 45.0% |
| GGAACCCACCTCTAATTTCT+AGG | + | chr3_2:53100383-53100402 | None:intergenic | 45.0% | |
| TGCATGAGGAATGAGGGAAT+GGG | + | chr3_2:53100404-53100423 | None:intergenic | 45.0% | |
| ATGCATGAGGAATGAGGGAA+TGG | + | chr3_2:53100405-53100424 | None:intergenic | 45.0% | |
| TACTATGACCCGTACGTCAT+AGG | + | chr3_2:53100881-53100900 | None:intergenic | 45.0% | |
| TACTATGACCCGTACGTCAT+AGG | + | chr3_2:53100881-53100900 | None:intergenic | 45.0% | |
| TACTATGACCCGTACGTCAT+AGG | + | chr3_2:53100881-53100900 | None:intergenic | 45.0% | |
| TACTATGACCCGTACGTCAT+AGG | + | chr3_2:53100881-53100900 | None:intergenic | 45.0% | |
| CACCACAACGAAGAGAAATG+TGG | - | chr3_2:53101078-53101097 | Msa0411020:intron | 45.0% | |
| CACCACAACGAAGAGAAATG+TGG | - | chr3_2:53101078-53101097 | Msa0411020:intron | 45.0% | |
| CTAGTTTCGGCTAACTAAGC+CGG | + | chr3_2:53101466-53101485 | None:intergenic | 45.0% | |
| GGGTTGAGGTTAGAAACAGA+TGG | - | chr3_2:53101709-53101728 | Msa0411020:intron | 45.0% | |
| TGCCTACAACCTAGGATAGA+TGG | - | chr3_2:53101753-53101772 | Msa0411020:intron | 45.0% | |
| CAGTGAGTTCCATCTATCCT+AGG | + | chr3_2:53101765-53101784 | None:intergenic | 45.0% | |
| GATGAAGAAGCAGAAGTAGC+TGG | - | chr3_2:53101858-53101877 | Msa0411020:intron | 45.0% | |
| CCGTATAAAGTACACGTCAG+TGG | - | chr3_2:53101882-53101901 | Msa0411020:intron | 45.0% | |
| !! | CGTCAGTGGTACTATTTCTG+AGG | - | chr3_2:53101896-53101915 | Msa0411020:intron | 45.0% |
| ACACACATGCTAGGTATCCT+AGG | - | chr3_2:53101996-53102015 | Msa0411020:intron | 45.0% | |
| ACCCCTACTAGAAATCACCT+AGG | + | chr3_2:53102016-53102035 | None:intergenic | 45.0% | |
| ! | CGATATAGGGTTTTTGCGGT+TGG | - | chr3_2:53105200-53105219 | Msa0411020:intron | 45.0% |
| TTGTCCACGTTAGTGGGATA+CGG | - | chr3_2:53105382-53105401 | Msa0411020:intron | 45.0% | |
| ATACGGAAGGTTTATGCCAG+TGG | - | chr3_2:53105399-53105418 | Msa0411020:five_prime_UTR | 45.0% | |
| GAAGGTTTATGCCAGTGGAA+CGG | - | chr3_2:53105404-53105423 | Msa0411020:five_prime_UTR | 45.0% | |
| AAGGTTTATGCCAGTGGAAC+GGG | - | chr3_2:53105405-53105424 | Msa0411020:five_prime_UTR | 45.0% | |
| ATGGACCGCACAATGATAAG+AGG | - | chr3_2:53105443-53105462 | Msa0411020:five_prime_UTR | 45.0% | |
| GGACTCCTCTTATCATTGTG+CGG | + | chr3_2:53105451-53105470 | None:intergenic | 45.0% | |
| GCACAATGATAAGAGGAGTC+CGG | - | chr3_2:53105450-53105469 | Msa0411020:five_prime_UTR | 45.0% | |
| ! | TTCCTATCTGAGGCTAACAC+CGG | + | chr3_2:53105472-53105491 | None:intergenic | 45.0% |
| CCGGTGAAAATTCCTATCTG+AGG | + | chr3_2:53105482-53105501 | None:intergenic | 45.0% | |
| ! | GAATTTTCACCGGTCAGTAG+TGG | - | chr3_2:53105489-53105508 | Msa0411020:five_prime_UTR | 45.0% |
| TCCTAGGTTGTAGGCAACCT+CGG | + | chr3_2:53101749-53101768 | None:intergenic | 50.0% | |
| GCTCAGCCAGACATGACATT+TGG | + | chr3_2:53102137-53102156 | None:intergenic | 50.0% | |
| TCCTAGGTTGTAGGCAACCT+CGG | + | chr3_2:53101749-53101768 | None:intergenic | 50.0% | |
| TTGTCCATGCTAGTGGGACA+CGG | - | chr3_2:53105274-53105293 | Msa0411020:intron | 50.0% | |
| ATCGGACACATCCGTAAGGA+TGG | - | chr3_2:53105315-53105334 | Msa0411020:intron | 50.0% | |
| GGAACGGGACACTTTCTGTA+AGG | - | chr3_2:53105420-53105439 | Msa0411020:five_prime_UTR | 50.0% | |
| CGGGACACTTTCTGTAAGGA+TGG | - | chr3_2:53105424-53105443 | Msa0411020:five_prime_UTR | 50.0% | |
| AGCCACATACCACTACTGAC+CGG | + | chr3_2:53105501-53105520 | None:intergenic | 50.0% | |
| GTCAGTAGTGGTATGTGGCT+GGG | - | chr3_2:53105501-53105520 | Msa0411020:five_prime_UTR | 50.0% | |
| TCAGTAGTGGTATGTGGCTG+GGG | - | chr3_2:53105502-53105521 | Msa0411020:five_prime_UTR | 50.0% | |
| CTAGGTTGTAGGCAACCTCG+GGG | + | chr3_2:53101747-53101766 | None:intergenic | 55.0% | |
| CCTAGGTTGTAGGCAACCTC+GGG | + | chr3_2:53101748-53101767 | None:intergenic | 55.0% | |
| ! | AGGTCGATTCAGATCGTGCC+TGG | - | chr3_2:53102057-53102076 | Msa0411020:intron | 55.0% |
| ! | GGTCGATTCAGATCGTGCCT+GGG | - | chr3_2:53102058-53102077 | Msa0411020:intron | 55.0% |
| ! | GTCGATTCAGATCGTGCCTG+GGG | - | chr3_2:53102059-53102078 | Msa0411020:intron | 55.0% |
| CTAGGTTGTAGGCAACCTCG+GGG | + | chr3_2:53101747-53101766 | None:intergenic | 55.0% | |
| CCTAGGTTGTAGGCAACCTC+GGG | + | chr3_2:53101748-53101767 | None:intergenic | 55.0% | |
| TGTCCATGCTAGTGGGACAC+GGG | - | chr3_2:53105275-53105294 | Msa0411020:intron | 55.0% | |
| GAGATTCACGCCACTGGGAT+CGG | - | chr3_2:53105297-53105316 | Msa0411020:intron | 55.0% | |
| TGGGATCGGACACATCCGTA+AGG | - | chr3_2:53105311-53105330 | Msa0411020:intron | 55.0% | |
| CCTTCCGTATCCCACTAACG+TGG | + | chr3_2:53105389-53105408 | None:intergenic | 55.0% | |
| CCACGTTAGTGGGATACGGA+AGG | - | chr3_2:53105386-53105405 | Msa0411020:intron | 55.0% | |
| !! | CAGAAAGTGTCCCGTTCCAC+TGG | + | chr3_2:53105418-53105437 | None:intergenic | 55.0% |
| ! | GTCCGGTGTTAGCCTCAGAT+AGG | - | chr3_2:53105467-53105486 | Msa0411020:five_prime_UTR | 55.0% |
| CACCGGTCAGTAGTGGTATG+TGG | - | chr3_2:53105496-53105515 | Msa0411020:five_prime_UTR | 55.0% | |
| GGTCAGTAGTGGTATGTGGC+TGG | - | chr3_2:53105500-53105519 | Msa0411020:five_prime_UTR | 55.0% | |
| TGGTGATCCTAGGTTCCCCG+AGG | - | chr3_2:53101729-53101748 | Msa0411020:intron | 60.0% | |
| TAGGCAACCTCGGGGAACCT+AGG | + | chr3_2:53101739-53101758 | None:intergenic | 60.0% | |
| CCCGAGGTTGCCTACAACCT+AGG | - | chr3_2:53101745-53101764 | Msa0411020:intron | 60.0% | |
| CAGATCGTGCCTGGGGTCAA+TGG | - | chr3_2:53102066-53102085 | Msa0411020:intron | 60.0% | |
| TGGTGATCCTAGGTTCCCCG+AGG | - | chr3_2:53101729-53101748 | Msa0411020:intron | 60.0% | |
| TAGGCAACCTCGGGGAACCT+AGG | + | chr3_2:53101739-53101758 | None:intergenic | 60.0% | |
| CCCGAGGTTGCCTACAACCT+AGG | - | chr3_2:53101745-53101764 | Msa0411020:intron | 60.0% | |
| TCTCCCGTGTCCCACTAGCA+TGG | + | chr3_2:53105281-53105300 | None:intergenic | 60.0% | |
| ACACGGGAGATTCACGCCAC+TGG | - | chr3_2:53105291-53105310 | Msa0411020:intron | 60.0% | |
| CACGGGAGATTCACGCCACT+GGG | - | chr3_2:53105292-53105311 | Msa0411020:intron | 60.0% | |
| ACGGATGTGTCCGATCCCAG+TGG | + | chr3_2:53105310-53105329 | None:intergenic | 60.0% | |
| CGTCTTGCGGGCCATCCTTA+CGG | + | chr3_2:53105329-53105348 | None:intergenic | 60.0% | |
| AGAATGGCGCAGCGGAAGCG+TGG | - | chr3_2:53102270-53102289 | Msa0411020:intron | 65.0% | |
| ! | ATGGCGCAGCGGAAGCGTGG+TGG | - | chr3_2:53102273-53102292 | Msa0411020:intron | 70.0% |
| ! | CGCAGCGGAAGCGTGGTGGC+TGG | - | chr3_2:53102277-53102296 | Msa0411020:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 53100254 | 53105537 | 53100254 | ID=Msa0411020;Name=Msa0411020 |
| chr3_2 | mRNA | 53100254 | 53105537 | 53100254 | ID=Msa0411020-mRNA-1;Parent=Msa0411020;Name=Msa0411020-mRNA-1;_AED=0.31;_eAED=0.31;_QI=161|0.2|0.33|0.33|0.8|0.66|6|0|160 |
| chr3_2 | exon | 53100254 | 53100396 | 53100254 | ID=Msa0411020-mRNA-1:exon:10567;Parent=Msa0411020-mRNA-1 |
| chr3_2 | exon | 53101160 | 53101259 | 53101160 | ID=Msa0411020-mRNA-1:exon:10566;Parent=Msa0411020-mRNA-1 |
| chr3_2 | exon | 53103493 | 53103567 | 53103493 | ID=Msa0411020-mRNA-1:exon:10565;Parent=Msa0411020-mRNA-1 |
| chr3_2 | exon | 53103652 | 53103737 | 53103652 | ID=Msa0411020-mRNA-1:exon:10564;Parent=Msa0411020-mRNA-1 |
| chr3_2 | exon | 53103867 | 53103966 | 53103867 | ID=Msa0411020-mRNA-1:exon:10563;Parent=Msa0411020-mRNA-1 |
| chr3_2 | exon | 53105398 | 53105537 | 53105398 | ID=Msa0411020-mRNA-1:exon:10562;Parent=Msa0411020-mRNA-1 |
| chr3_2 | five_prime_UTR | 53105398 | 53105537 | 53105398 | ID=Msa0411020-mRNA-1:five_prime_utr;Parent=Msa0411020-mRNA-1 |
| chr3_2 | five_prime_UTR | 53103946 | 53103966 | 53103946 | ID=Msa0411020-mRNA-1:five_prime_utr;Parent=Msa0411020-mRNA-1 |
| chr3_2 | CDS | 53103867 | 53103945 | 53103867 | ID=Msa0411020-mRNA-1:cds;Parent=Msa0411020-mRNA-1 |
| chr3_2 | CDS | 53103652 | 53103737 | 53103652 | ID=Msa0411020-mRNA-1:cds;Parent=Msa0411020-mRNA-1 |
| chr3_2 | CDS | 53103493 | 53103567 | 53103493 | ID=Msa0411020-mRNA-1:cds;Parent=Msa0411020-mRNA-1 |
| chr3_2 | CDS | 53101160 | 53101259 | 53101160 | ID=Msa0411020-mRNA-1:cds;Parent=Msa0411020-mRNA-1 |
| chr3_2 | CDS | 53100254 | 53100396 | 53100254 | ID=Msa0411020-mRNA-1:cds;Parent=Msa0411020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
