Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414130 | XP_013460399.1 | 92.405 | 395 | 12 | 2 | 1 | 392 | 1 | 380 | 0.0 | 682 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414130 | sp|Q94A03|CDS4_ARATH | 67.098 | 386 | 104 | 6 | 26 | 392 | 10 | 391 | 4.87e-175 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414130 | A0A072UXZ9 | 92.405 | 395 | 12 | 2 | 1 | 392 | 1 | 380 | 0.0 | 682 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102290 | Msa0414130 | 0.803822 | 2.901125e-49 | -8.615850e-47 |
| Msa0369430 | Msa0414130 | 0.829678 | 4.501392e-55 | -8.615850e-47 |
| Msa0414130 | Msa0552670 | 0.805949 | 1.042825e-49 | -8.615850e-47 |
| Msa0414130 | Msa0799150 | 0.813625 | 2.328525e-51 | -8.615850e-47 |
| Msa0414130 | Msa0841350 | 0.803428 | 3.502147e-49 | -8.615850e-47 |
| Msa0414130 | Msa0967540 | 0.817096 | 3.937534e-52 | -8.615850e-47 |
| Msa0414130 | Msa1128850 | 0.819780 | 9.703667e-53 | -8.615850e-47 |
| Msa0414130 | Msa1423270 | 0.801173 | 1.020401e-48 | -8.615850e-47 |
| Msa0311910 | Msa0414130 | 0.814847 | 1.250809e-51 | -8.615850e-47 |
| Msa0329060 | Msa0414130 | 0.814782 | 1.292524e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414130 | MtrunA17_Chr3g0107001 | 92.405 | 395 | 12 | 2 | 1 | 392 | 1 | 380 | 0.0 | 682 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414130 | AT2G45150.3 | 68.338 | 379 | 102 | 6 | 26 | 392 | 10 | 382 | 9.47e-177 | 497 |
| Msa0414130 | AT2G45150.1 | 64.304 | 395 | 117 | 4 | 21 | 392 | 37 | 430 | 7.08e-176 | 497 |
| Msa0414130 | AT3G60620.1 | 64.010 | 389 | 113 | 6 | 26 | 392 | 16 | 399 | 9.45e-166 | 470 |
| Msa0414130 | AT3G60620.2 | 60.692 | 318 | 102 | 5 | 26 | 321 | 16 | 332 | 1.04e-123 | 361 |
| Msa0414130 | AT2G45150.2 | 57.692 | 286 | 97 | 4 | 21 | 283 | 37 | 321 | 4.19e-105 | 313 |
Find 127 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGATATCTTCCCTGTTTC+TGG | -0.013939 | 3_2:+59112755 | Msa0414130:CDS |
| CTTGGCGTTCTGACTTTCTT+TGG | 0.128003 | 3_2:+59114261 | Msa0414130:CDS |
| AGAAGAGAAGGAGCGGTAAT+TGG | 0.172088 | 3_2:-59110131 | None:intergenic |
| ATTTACCATGACCAGGTATT+AGG | 0.176599 | 3_2:-59114350 | None:intergenic |
| ATCTCTTTCAAAGCCAATTA+TGG | 0.213794 | 3_2:-59115263 | None:intergenic |
| AAATAGTCTCAGTTGTATTT+TGG | 0.231976 | 3_2:+59115403 | Msa0414130:three_prime_UTR |
| AGCTGCAATAATGCTACTTA+TGG | 0.238504 | 3_2:-59113385 | None:intergenic |
| AGAATCGCATACACAAAATT+TGG | 0.244791 | 3_2:+59115045 | Msa0414130:three_prime_UTR |
| TTGAAAACTGACTTGAACTA+TGG | 0.262230 | 3_2:-59115173 | None:intergenic |
| GACATGTAAATAGCCATAAT+TGG | 0.268989 | 3_2:+59115250 | Msa0414130:three_prime_UTR |
| TGGACTTGGCATTGGGATTT+CGG | 0.271900 | 3_2:+59111348 | Msa0414130:CDS |
| AAAACCTTTCTGCCGCTTTA+CGG | 0.273062 | 3_2:+59114708 | Msa0414130:CDS |
| GCTGATACATTTGCGTTTAT+TGG | 0.285689 | 3_2:+59113405 | Msa0414130:CDS |
| ATGGCTGCAGTTGTCTTTGC+TGG | 0.286363 | 3_2:+59111415 | Msa0414130:CDS |
| GTACCCTCCCATGTCTTCTT+TGG | 0.287591 | 3_2:-59113631 | None:intergenic |
| CGACATGTAGTGTACCTTAA+TGG | 0.293488 | 3_2:-59113724 | None:intergenic |
| CAGCTAAGCAGTGCCATCTT+TGG | 0.294189 | 3_2:+59112721 | Msa0414130:CDS |
| TAAGAAAGTTATTACCTTAT+GGG | 0.305656 | 3_2:-59110320 | None:intergenic |
| TGGTCAACTTGTCTTGGATT+TGG | 0.306887 | 3_2:-59115153 | None:intergenic |
| GTTGAACCGGTTCAGGTATT+CGG | 0.326684 | 3_2:-59110237 | None:intergenic |
| TGTCTTCTTTGGACTTATAC+TGG | 0.328161 | 3_2:-59113620 | None:intergenic |
| GTTGGCCTGTATCACCATTA+AGG | 0.328379 | 3_2:+59113710 | Msa0414130:CDS |
| TTTACCATGACCAGGTATTA+GGG | 0.333920 | 3_2:-59114349 | None:intergenic |
| TTGGCGTTCTGACTTTCTTT+GGG | 0.336357 | 3_2:+59114262 | Msa0414130:CDS |
| ACATGGGAGGGTACTATTAT+AGG | 0.336510 | 3_2:+59113640 | Msa0414130:CDS |
| TTCGGCTGGAGGTATTGTTT+TGG | 0.342782 | 3_2:+59111366 | Msa0414130:CDS |
| AAATGATGCACAAGAGTATA+AGG | 0.343870 | 3_2:+59115197 | Msa0414130:three_prime_UTR |
| AACCGGGGTTGAACCGGTTC+AGG | 0.350412 | 3_2:-59110244 | None:intergenic |
| GTGGACCGCAGGAACGGTTT+TGG | 0.352674 | 3_2:-59110211 | None:intergenic |
| TGGATATCTTCCCTGTTTCT+GGG | 0.352806 | 3_2:+59112756 | Msa0414130:CDS |
| ACTGCTTAGCTGTGCAAAAC+GGG | 0.352952 | 3_2:-59112710 | None:intergenic |
| AGCTAAGCAGTGCCATCTTT+GGG | 0.353772 | 3_2:+59112722 | Msa0414130:CDS |
| GGAGGAAGACGGTCCGGTTC+AGG | 0.355482 | 3_2:-59110289 | None:intergenic |
| TAACCTTGTTTGTTCGGTAC+TGG | 0.363559 | 3_2:-59109957 | None:intergenic |
| AAATTACTTACTTGTGTTCA+AGG | 0.364875 | 3_2:-59112809 | None:intergenic |
| TTCTTGGTGGTCAAGCTCAT+TGG | 0.366725 | 3_2:+59113334 | Msa0414130:CDS |
| AGAGCGAGTTGGTGAGTTGT+AGG | 0.369082 | 3_2:-59110084 | None:intergenic |
| ACCAACTAACCTTGTTTGTT+CGG | 0.378306 | 3_2:-59109963 | None:intergenic |
| TCGAAGCTTAACCCAGAAAC+AGG | 0.382853 | 3_2:-59112767 | None:intergenic |
| TGTATCTTCATGCAGGCATT+TGG | 0.389604 | 3_2:+59113583 | Msa0414130:intron |
| GAACATTGGCAACAATGAAC+CGG | 0.401483 | 3_2:-59110261 | None:intergenic |
| TACTTACTTGTGTTCAAGGC+TGG | 0.406387 | 3_2:-59112805 | None:intergenic |
| GAAGAGAAGGAGCGGTAATT+GGG | 0.409210 | 3_2:-59110130 | None:intergenic |
| CTGATTCATGCCAGGTATCA+TGG | 0.416678 | 3_2:+59112616 | Msa0414130:intron |
| CAATAAATGATACCCTTGTT+TGG | 0.417234 | 3_2:-59115221 | None:intergenic |
| ACCGAACAAACAAGGTTAGT+TGG | 0.428509 | 3_2:+59109962 | Msa0414130:five_prime_UTR |
| ACAATGAACCGGGGTTGAAC+CGG | 0.431402 | 3_2:-59110250 | None:intergenic |
| CACTGCTTAGCTGTGCAAAA+CGG | 0.431629 | 3_2:-59112711 | None:intergenic |
| CACTCTCCGAATACCTGAAC+CGG | 0.434681 | 3_2:+59110231 | Msa0414130:CDS |
| GTGTTCTGATCTATTAAGAT+AGG | 0.435947 | 3_2:-59109916 | None:intergenic |
| GAACTATGGTCAACTTGTCT+TGG | 0.437542 | 3_2:-59115159 | None:intergenic |
| CTTGGCATTGGGATTTCGGC+TGG | 0.437903 | 3_2:+59111352 | Msa0414130:CDS |
| TTTGTCAGTGTAATAGCTCT+TGG | 0.440365 | 3_2:+59114243 | Msa0414130:intron |
| CAATGTTCATCAACCTGAAC+CGG | 0.450445 | 3_2:+59110276 | Msa0414130:CDS |
| GTGTACCTTAATGGTGATAC+AGG | 0.464668 | 3_2:-59113715 | None:intergenic |
| ACTAGTGAATAAGAACCATT+TGG | 0.467637 | 3_2:+59115341 | Msa0414130:three_prime_UTR |
| TCCTCCACTCAATGCCCATA+AGG | 0.467824 | 3_2:+59110306 | Msa0414130:CDS |
| AATAGTTATAATTATGTGAA+TGG | 0.468391 | 3_2:-59115437 | None:intergenic |
| AATTTGAGATTGAGAAGAGA+AGG | 0.496959 | 3_2:-59110143 | None:intergenic |
| GATACATTTGCGTTTATTGG+TGG | 0.503969 | 3_2:+59113408 | Msa0414130:CDS |
| TCTTGGATTTGGAATGATGA+AGG | 0.507484 | 3_2:-59115142 | None:intergenic |
| GCTTGACCACCAAGAAGAAA+AGG | 0.515174 | 3_2:-59113327 | None:intergenic |
| ATTTGGAAAATCTTGTTGAG+TGG | 0.518455 | 3_2:+59115062 | Msa0414130:three_prime_UTR |
| TTTGGACTTATACTGGTAAG+TGG | 0.526437 | 3_2:-59113613 | None:intergenic |
| AGCAAAGACAACTGCAGCCA+TGG | 0.526837 | 3_2:-59111413 | None:intergenic |
| TCAATGATTAAACGCGATGC+TGG | 0.529240 | 3_2:+59114309 | Msa0414130:CDS |
| GCTCTTGAAATCTCAACTGC+AGG | 0.531554 | 3_2:+59111297 | Msa0414130:CDS |
| AACATTGGCAACAATGAACC+GGG | 0.537382 | 3_2:-59110260 | None:intergenic |
| ACAATAAAATAACCCAAAGA+TGG | 0.537736 | 3_2:-59112734 | None:intergenic |
| TTGAGTGGAGGAAGACGGTC+CGG | 0.540834 | 3_2:-59110295 | None:intergenic |
| TCCTTCTCAAATTCTCAGAA+AGG | 0.544263 | 3_2:-59110007 | None:intergenic |
| ATTTGCGTTTATTGGTGGCA+AGG | 0.547248 | 3_2:+59113413 | Msa0414130:CDS |
| TGGCTTTGAAAGAGATAGAA+CGG | 0.548881 | 3_2:+59115270 | Msa0414130:three_prime_UTR |
| GGTCAAGCTCATTGGACAGT+AGG | 0.549853 | 3_2:+59113342 | Msa0414130:CDS |
| TTTGAATTGGTTCGGAGTCG+AGG | 0.552044 | 3_2:+59111451 | Msa0414130:CDS |
| AAGAGTATAAGGACCAAACA+AGG | 0.554439 | 3_2:+59115208 | Msa0414130:three_prime_UTR |
| CGGTTCAGGTTGATGAACAT+TGG | 0.555727 | 3_2:-59110275 | None:intergenic |
| ATGACCAGGTATTAGGGAGC+CGG | 0.557424 | 3_2:-59114343 | None:intergenic |
| GGCATTGGGATTTCGGCTGG+AGG | 0.557577 | 3_2:+59111355 | Msa0414130:CDS |
| TGGTCATATTGATGTTTCTG+TGG | 0.558876 | 3_2:+59112636 | Msa0414130:CDS |
| GAGATTGAGAAGAGAAGGAG+CGG | 0.559101 | 3_2:-59110138 | None:intergenic |
| AAATAATTACTAGCACCAAA+TGG | 0.560862 | 3_2:-59115356 | None:intergenic |
| TTGAGATACACACGAGGAGG+AGG | 0.566175 | 3_2:-59110035 | None:intergenic |
| AACTGCAGGTTAGTCAGCTT+AGG | 0.567601 | 3_2:+59111311 | Msa0414130:CDS |
| GAATGAAATTGCGATGATGA+AGG | 0.570685 | 3_2:-59110108 | None:intergenic |
| CGGTTCAGGTATTCGGAGAG+TGG | 0.579107 | 3_2:-59110230 | None:intergenic |
| CAGAAATATTTACCATGACC+AGG | 0.580813 | 3_2:-59114357 | None:intergenic |
| AGTCCAAAGAAGACATGGGA+GGG | 0.585985 | 3_2:+59113628 | Msa0414130:CDS |
| ACCTTATGGGCATTGAGTGG+AGG | 0.586790 | 3_2:-59110307 | None:intergenic |
| CGGAGAGTGGACCGCAGGAA+CGG | 0.587160 | 3_2:-59110217 | None:intergenic |
| TTAGCGAATGAAGAAGAAGA+AGG | 0.587686 | 3_2:-59110175 | None:intergenic |
| TACTCCGTAAAGCGGCAGAA+AGG | 0.588347 | 3_2:-59114712 | None:intergenic |
| ACCTTTCTGAGAATTTGAGA+AGG | 0.598351 | 3_2:+59110006 | Msa0414130:five_prime_UTR |
| GTATTCGGAGAGTGGACCGC+AGG | 0.599746 | 3_2:-59110222 | None:intergenic |
| CGTGACACGTATCGCGGAGG+AGG | 0.603265 | 3_2:-59111493 | None:intergenic |
| TTTCCAGTACCGAACAAACA+AGG | 0.604839 | 3_2:+59109954 | Msa0414130:five_prime_UTR |
| GACTCCGGCTCCCTAATACC+TGG | 0.606045 | 3_2:+59114339 | Msa0414130:CDS |
| ATTACCTTATGGGCATTGAG+TGG | 0.606321 | 3_2:-59110310 | None:intergenic |
| CAATGTCATACTCCGTAAAG+CGG | 0.612223 | 3_2:-59114720 | None:intergenic |
| CGGAGTCGAGGAATTACAGA+AGG | 0.619723 | 3_2:+59111463 | Msa0414130:CDS |
| TACCTGAACCGGTTCAACCC+CGG | 0.619760 | 3_2:+59110242 | Msa0414130:CDS |
| GTATAAGTCCAAAGAAGACA+TGG | 0.621405 | 3_2:+59113623 | Msa0414130:CDS |
| AATGAAATTGCGATGATGAA+GGG | 0.622386 | 3_2:-59110107 | None:intergenic |
| GGGCATTGAGTGGAGGAAGA+CGG | 0.623121 | 3_2:-59110300 | None:intergenic |
| TCATTGGACAGTAGGTCTTG+TGG | 0.630527 | 3_2:+59113350 | Msa0414130:CDS |
| CGAAGCTTAACCCAGAAACA+GGG | 0.631345 | 3_2:-59112766 | None:intergenic |
| TCTTTGCACGAGTAATGCCA+TGG | 0.631691 | 3_2:-59112680 | None:intergenic |
| TTCTGGGTTAAGCTTCGATG+TGG | 0.632925 | 3_2:+59112772 | Msa0414130:CDS |
| GATTCTCGTCCTCTGATCCA+AGG | 0.636396 | 3_2:-59115028 | None:intergenic |
| GGCTCCCTAATACCTGGTCA+TGG | 0.637072 | 3_2:+59114345 | Msa0414130:CDS |
| TTGTAGGAATAGGAGAAACA+TGG | 0.637894 | 3_2:+59113304 | Msa0414130:intron |
| TCAAACCAAAACCGTTCCTG+CGG | 0.650267 | 3_2:+59110206 | Msa0414130:CDS |
| TAAATATTTATCGAAACTCG+CGG | 0.655530 | 3_2:+59114997 | Msa0414130:three_prime_UTR |
| TATAAGTCCAAAGAAGACAT+GGG | 0.657925 | 3_2:+59113624 | Msa0414130:CDS |
| AAGTCCAAAGAAGACATGGG+AGG | 0.668891 | 3_2:+59113627 | Msa0414130:CDS |
| GATGCTGGTGTGAAAGACTC+CGG | 0.670539 | 3_2:+59114324 | Msa0414130:CDS |
| CTGCTTAGCTGTGCAAAACG+GGG | 0.674802 | 3_2:-59112709 | None:intergenic |
| CAATTGAGATACACACGAGG+AGG | 0.684329 | 3_2:-59110038 | None:intergenic |
| ATGATGAAGGGAGAGCGAGT+TGG | 0.684643 | 3_2:-59110095 | None:intergenic |
| ATGGCATTACTCGTGCAAAG+AGG | 0.691554 | 3_2:+59112682 | Msa0414130:CDS |
| AGAGTATAAGGACCAAACAA+GGG | 0.696265 | 3_2:+59115209 | Msa0414130:three_prime_UTR |
| CAGACTCGTGACACGTATCG+CGG | 0.699317 | 3_2:-59111499 | None:intergenic |
| CGGAGTATGACATTGAACAG+TGG | 0.713294 | 3_2:+59114728 | Msa0414130:exon |
| ACTCGTGACACGTATCGCGG+AGG | 0.729395 | 3_2:-59111496 | None:intergenic |
| ACATTGGCAACAATGAACCG+GGG | 0.751950 | 3_2:-59110259 | None:intergenic |
| AGGTGGAGTACTAGACAGAG+CGG | 0.756349 | 3_2:+59114644 | Msa0414130:intron |
| AAACAATTGAGATACACACG+AGG | 0.806879 | 3_2:-59110041 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATAAAACACTTTTTTT+TGG | - | chr3_2:59110373-59110392 | None:intergenic | 10.0% |
| !!! | GTGTTTTATTTTATTTTATT+TGG | + | chr3_2:59110380-59110399 | Msa0414130:intron | 10.0% |
| !! | TACAAAATAAGAATTTATTA+TGG | - | chr3_2:59113289-59113308 | None:intergenic | 10.0% |
| !!! | ATAATAAATTCTTATTTTGT+AGG | + | chr3_2:59113288-59113307 | Msa0414130:intron | 10.0% |
| !!! | TAATATTTATCATGTTATTT+TGG | + | chr3_2:59113851-59113870 | Msa0414130:intron | 10.0% |
| !!! | GTTAAATTTTTAAGTTAGTA+AGG | + | chr3_2:59111048-59111067 | Msa0414130:intron | 15.0% |
| !!! | TTAGTTGAATTTTAATTTAG+TGG | + | chr3_2:59111091-59111110 | Msa0414130:intron | 15.0% |
| !!! | CACTTAACATAAATTTTAAT+CGG | - | chr3_2:59111160-59111179 | None:intergenic | 15.0% |
| !! | ATGAAAATATAATAGATGAA+AGG | + | chr3_2:59111754-59111773 | Msa0414130:intron | 15.0% |
| !! | AATAGTTATAATTATGTGAA+TGG | - | chr3_2:59115440-59115459 | None:intergenic | 15.0% |
| !! | TAAGAAAGTTATTACCTTAT+GGG | - | chr3_2:59110323-59110342 | None:intergenic | 20.0% |
| !! | ATAAGGTAATAACTTTCTTA+GGG | + | chr3_2:59110323-59110342 | Msa0414130:intron | 20.0% |
| !! | CAAAATCAATTCTAATTTAG+TGG | + | chr3_2:59110542-59110561 | Msa0414130:intron | 20.0% |
| !!! | ATTTCAAATCTTTTTTACAG+TGG | - | chr3_2:59110714-59110733 | None:intergenic | 20.0% |
| !!! | TTTTTAAGTTAGTAAGGAAA+TGG | + | chr3_2:59111054-59111073 | Msa0414130:intron | 20.0% |
| !! | TTAATTTAGTGGTGAAAAAT+TGG | + | chr3_2:59111102-59111121 | Msa0414130:intron | 20.0% |
| !! | TAATTTAGTGGTGAAAAATT+GGG | + | chr3_2:59111103-59111122 | Msa0414130:intron | 20.0% |
| !!! | GAATAGTGGAATTTATTTTA+TGG | + | chr3_2:59111666-59111685 | Msa0414130:intron | 20.0% |
| !!! | ATTTTATTGTCTTGAGTTTA+CGG | + | chr3_2:59112223-59112242 | Msa0414130:intron | 20.0% |
| !! | GAAAAGATAACAAGAATAAA+GGG | - | chr3_2:59112318-59112337 | None:intergenic | 20.0% |
| !! | TGAAAAGATAACAAGAATAA+AGG | - | chr3_2:59112319-59112338 | None:intergenic | 20.0% |
| !! | AAAATGTAACTTAAGCAAAT+GGG | - | chr3_2:59112410-59112429 | None:intergenic | 20.0% |
| !! | TAAAATGTAACTTAAGCAAA+TGG | - | chr3_2:59112411-59112430 | None:intergenic | 20.0% |
| !!! | ATTTGCTTAAGTTACATTTT+AGG | + | chr3_2:59112410-59112429 | Msa0414130:intron | 20.0% |
| !!! | TTTGCTTAAGTTACATTTTA+GGG | + | chr3_2:59112411-59112430 | Msa0414130:intron | 20.0% |
| !! | AAGGCAAACTTATAAATAAT+GGG | - | chr3_2:59112468-59112487 | None:intergenic | 20.0% |
| !!! | AATTCTTATTTTGTAGGAAT+AGG | + | chr3_2:59113294-59113313 | Msa0414130:intron | 20.0% |
| !!! | TACTATAACTGTTGATAAAT+GGG | - | chr3_2:59114196-59114215 | None:intergenic | 20.0% |
| !!! | TTACTATAACTGTTGATAAA+TGG | - | chr3_2:59114197-59114216 | None:intergenic | 20.0% |
| !! | TTTAGTCAATAAGTAATTAC+AGG | + | chr3_2:59114488-59114507 | Msa0414130:intron | 20.0% |
| !!! | AAATGGATGAAATCTTTTTT+TGG | - | chr3_2:59114869-59114888 | None:intergenic | 20.0% |
| !!! | TGCTAGTAATTATTTTTCTA+GGG | + | chr3_2:59115364-59115383 | Msa0414130:three_prime_UTR | 20.0% |
| ! | CTAAGAAAGTTATTACCTTA+TGG | - | chr3_2:59110324-59110343 | None:intergenic | 25.0% |
| ! | CATAAGGTAATAACTTTCTT+AGG | + | chr3_2:59110322-59110341 | Msa0414130:intron | 25.0% |
| ! | TAAGGTAATAACTTTCTTAG+GGG | + | chr3_2:59110324-59110343 | Msa0414130:intron | 25.0% |
| !!! | TACAAAGTGTTGTCAAATAT+CGG | + | chr3_2:59110821-59110840 | Msa0414130:intron | 25.0% |
| ! | TTAACAAACAAATGTAGTAC+AGG | - | chr3_2:59110950-59110969 | None:intergenic | 25.0% |
| !! | TGTACTACATTTGTTTGTTA+AGG | + | chr3_2:59110949-59110968 | Msa0414130:intron | 25.0% |
| !!! | TTATGTTACTTGTGTTCTTT+TGG | + | chr3_2:59110998-59111017 | Msa0414130:intron | 25.0% |
| !!! | TTTTGGTTTTCTTCATTTGA+TGG | + | chr3_2:59111015-59111034 | Msa0414130:intron | 25.0% |
| ! | AATTTAGTGGTGAAAAATTG+GGG | + | chr3_2:59111104-59111123 | Msa0414130:intron | 25.0% |
| !!! | GTGAATATTTTGAATTGGTT+CGG | + | chr3_2:59111443-59111462 | Msa0414130:CDS | 25.0% |
| ! | TAATCTTACATGACAAAAAG+TGG | - | chr3_2:59111547-59111566 | None:intergenic | 25.0% |
| ! | CATATCATATATACTCTTTG+TGG | + | chr3_2:59111697-59111716 | Msa0414130:intron | 25.0% |
| ! | GTAGATTATTGGAAAAAAGA+TGG | - | chr3_2:59111896-59111915 | None:intergenic | 25.0% |
| !! | TTTTATTGTCTTGAGTTTAC+GGG | + | chr3_2:59112224-59112243 | Msa0414130:intron | 25.0% |
| ! | ACTTGAAGATAATCGTAAAA+GGG | - | chr3_2:59112346-59112365 | None:intergenic | 25.0% |
| ! | CAAGGCAAACTTATAAATAA+TGG | - | chr3_2:59112469-59112488 | None:intergenic | 25.0% |
| ! | TAACGATATAGATAAAAGCA+AGG | - | chr3_2:59112487-59112506 | None:intergenic | 25.0% |
| !! | ATTTTTACTTCCATAACTTC+AGG | + | chr3_2:59112546-59112565 | Msa0414130:intron | 25.0% |
| ! | ACAATAAAATAACCCAAAGA+TGG | - | chr3_2:59112737-59112756 | None:intergenic | 25.0% |
| !!! | ATCTTTGGGTTATTTTATTG+TGG | + | chr3_2:59112736-59112755 | Msa0414130:CDS | 25.0% |
| ! | AAATTACTTACTTGTGTTCA+AGG | - | chr3_2:59112812-59112831 | None:intergenic | 25.0% |
| ! | CACAGTAGCATAATATTATT+GGG | - | chr3_2:59113135-59113154 | None:intergenic | 25.0% |
| ! | ACACAGTAGCATAATATTAT+TGG | - | chr3_2:59113136-59113155 | None:intergenic | 25.0% |
| ! | TTCAAACCACATAGTAAAAT+TGG | - | chr3_2:59113251-59113270 | None:intergenic | 25.0% |
| !!! | AACAGTTAACACTGATTTTA+CGG | - | chr3_2:59113512-59113531 | None:intergenic | 25.0% |
| !!! | TTATTTTTGTATCTTCATGC+AGG | + | chr3_2:59113576-59113595 | Msa0414130:intron | 25.0% |
| !! | GTACTATTATAGGATTTTGT+GGG | + | chr3_2:59113650-59113669 | Msa0414130:CDS | 25.0% |
| ! | ATGTTTGCTTGATAAATTGT+CGG | + | chr3_2:59113805-59113824 | Msa0414130:intron | 25.0% |
| ! | TCCATGTAACACTATTTATT+CGG | + | chr3_2:59114168-59114187 | Msa0414130:intron | 25.0% |
| !!! | TGTGGTTCTTTTTGTTTTAT+GGG | + | chr3_2:59114219-59114238 | Msa0414130:intron | 25.0% |
| ! | TTAGAGATGAACAAAATAGA+AGG | - | chr3_2:59114461-59114480 | None:intergenic | 25.0% |
| !!! | TTTGTTTTAACAGGATAACA+TGG | - | chr3_2:59114539-59114558 | None:intergenic | 25.0% |
| ! | TCCATCAGAAAATATTTGAA+GGG | + | chr3_2:59114591-59114610 | Msa0414130:intron | 25.0% |
| !!! | TTATTGATTTCATCTAATGC+AGG | + | chr3_2:59114624-59114643 | Msa0414130:intron | 25.0% |
| ! | GATAATGCATAAAATATGCA+AGG | + | chr3_2:59114818-59114837 | Msa0414130:intron | 25.0% |
| ! | AAAGTAAATAGCATAACAGT+TGG | + | chr3_2:59114910-59114929 | Msa0414130:intron | 25.0% |
| ! | AAGTAAATAGCATAACAGTT+GGG | + | chr3_2:59114911-59114930 | Msa0414130:intron | 25.0% |
| ! | TAAATATTTATCGAAACTCG+CGG | + | chr3_2:59114997-59115016 | Msa0414130:three_prime_UTR | 25.0% |
| ! | AAATAATTACTAGCACCAAA+TGG | - | chr3_2:59115359-59115378 | None:intergenic | 25.0% |
| !!! | GTGCTAGTAATTATTTTTCT+AGG | + | chr3_2:59115363-59115382 | Msa0414130:three_prime_UTR | 25.0% |
| !! | AAATAGTCTCAGTTGTATTT+TGG | + | chr3_2:59115403-59115422 | Msa0414130:three_prime_UTR | 25.0% |
| GTGTTCTGATCTATTAAGAT+AGG | - | chr3_2:59109919-59109938 | None:intergenic | 30.0% | |
| AATGAAATTGCGATGATGAA+GGG | - | chr3_2:59110110-59110129 | None:intergenic | 30.0% | |
| ! | AATTTGAGATTGAGAAGAGA+AGG | - | chr3_2:59110146-59110165 | None:intergenic | 30.0% |
| !!! | AACGGTTTTGGTTTGAATTT+GGG | - | chr3_2:59110202-59110221 | None:intergenic | 30.0% |
| TGTTAAATTCCTCTACTCTA+TGG | - | chr3_2:59110770-59110789 | None:intergenic | 30.0% | |
| !! | TTCATTTGATGGTGAAGAAT+TGG | + | chr3_2:59111026-59111045 | Msa0414130:intron | 30.0% |
| ! | ATCGGTTCTTTAAACTTTCT+AGG | - | chr3_2:59111142-59111161 | None:intergenic | 30.0% |
| !! | TGCACGTGAATATTTTGAAT+TGG | + | chr3_2:59111438-59111457 | Msa0414130:CDS | 30.0% |
| !! | TTGTTTTGCATGTTGAATAG+TGG | + | chr3_2:59111652-59111671 | Msa0414130:intron | 30.0% |
| AGAGATATATGAGCTTTACA+TGG | + | chr3_2:59111869-59111888 | Msa0414130:intron | 30.0% | |
| GAAGTTAGAGTGTAGATTAT+TGG | - | chr3_2:59111907-59111926 | None:intergenic | 30.0% | |
| ATATAATCTGAGTAGAGAGT+AGG | + | chr3_2:59112035-59112054 | Msa0414130:intron | 30.0% | |
| TATAATCTGAGTAGAGAGTA+GGG | + | chr3_2:59112036-59112055 | Msa0414130:intron | 30.0% | |
| TGAAAAGGAACATATTTCTC+TGG | + | chr3_2:59112108-59112127 | Msa0414130:intron | 30.0% | |
| CACTTGAAGATAATCGTAAA+AGG | - | chr3_2:59112347-59112366 | None:intergenic | 30.0% | |
| ! | AATGGGTTTATGTTACATCA+AGG | - | chr3_2:59112393-59112412 | None:intergenic | 30.0% |
| ATTTAACATGCCTGAAGTTA+TGG | - | chr3_2:59112559-59112578 | None:intergenic | 30.0% | |
| CTTCAGGCATGTTAAATTTA+TGG | + | chr3_2:59112562-59112581 | Msa0414130:intron | 30.0% | |
| ! | CTAGCAATGAAATTTAGAAC+CGG | - | chr3_2:59112937-59112956 | None:intergenic | 30.0% |
| TGAAATATATACCGAAGCTT+AGG | - | chr3_2:59112997-59113016 | None:intergenic | 30.0% | |
| ! | CAAACTCCAATTTTACTATG+TGG | + | chr3_2:59113242-59113261 | Msa0414130:intron | 30.0% |
| AATCAGTGTTAACTGTTAAC+TGG | + | chr3_2:59113515-59113534 | Msa0414130:intron | 30.0% | |
| TATAAGTCCAAAGAAGACAT+GGG | + | chr3_2:59113624-59113643 | Msa0414130:CDS | 30.0% | |
| ! | GGTACTATTATAGGATTTTG+TGG | + | chr3_2:59113649-59113668 | Msa0414130:CDS | 30.0% |
| ATCAAGCAAACATTTACAGA+AGG | - | chr3_2:59113798-59113817 | None:intergenic | 30.0% | |
| !!! | TGTTATTTTGGTGATTTGCA+TGG | + | chr3_2:59113863-59113882 | Msa0414130:intron | 30.0% |
| ! | GAAAAGTTTTTCCCATAAGA+AGG | - | chr3_2:59113892-59113911 | None:intergenic | 30.0% |
| ACCGAATAAATAGTGTTACA+TGG | - | chr3_2:59114172-59114191 | None:intergenic | 30.0% | |
| TCAACAGTTATAGTAATCTG+TGG | + | chr3_2:59114201-59114220 | Msa0414130:intron | 30.0% | |
| !!! | CTGTGGTTCTTTTTGTTTTA+TGG | + | chr3_2:59114218-59114237 | Msa0414130:intron | 30.0% |
| TTCTGATGGAGAACAAAATT+AGG | - | chr3_2:59114581-59114600 | None:intergenic | 30.0% | |
| CTCCATCAGAAAATATTTGA+AGG | + | chr3_2:59114590-59114609 | Msa0414130:intron | 30.0% | |
| ! | ACCCTTCAAATATTTTCTGA+TGG | - | chr3_2:59114595-59114614 | None:intergenic | 30.0% |
| !!! | ATGAAATCTTTTTTTGGTGG+TGG | - | chr3_2:59114863-59114882 | None:intergenic | 30.0% |
| !!! | TGGATGAAATCTTTTTTTGG+TGG | - | chr3_2:59114866-59114885 | None:intergenic | 30.0% |
| AGAATCGCATACACAAAATT+TGG | + | chr3_2:59115045-59115064 | Msa0414130:three_prime_UTR | 30.0% | |
| ATTTGGAAAATCTTGTTGAG+TGG | + | chr3_2:59115062-59115081 | Msa0414130:three_prime_UTR | 30.0% | |
| !! | TTGAAAACTGACTTGAACTA+TGG | - | chr3_2:59115176-59115195 | None:intergenic | 30.0% |
| ! | AAATGATGCACAAGAGTATA+AGG | + | chr3_2:59115197-59115216 | Msa0414130:three_prime_UTR | 30.0% |
| CAATAAATGATACCCTTGTT+TGG | - | chr3_2:59115224-59115243 | None:intergenic | 30.0% | |
| GACATGTAAATAGCCATAAT+TGG | + | chr3_2:59115250-59115269 | Msa0414130:three_prime_UTR | 30.0% | |
| ATCTCTTTCAAAGCCAATTA+TGG | - | chr3_2:59115266-59115285 | None:intergenic | 30.0% | |
| !! | ATTTTGATGTACTATGAGCT+AGG | + | chr3_2:59115310-59115329 | Msa0414130:three_prime_UTR | 30.0% |
| ACTAGTGAATAAGAACCATT+TGG | + | chr3_2:59115341-59115360 | Msa0414130:three_prime_UTR | 30.0% | |
| ! | ACCAACTAACCTTGTTTGTT+CGG | - | chr3_2:59109966-59109985 | None:intergenic | 35.0% |
| ! | ACCTTTCTGAGAATTTGAGA+AGG | + | chr3_2:59110006-59110025 | Msa0414130:five_prime_UTR | 35.0% |
| TCCTTCTCAAATTCTCAGAA+AGG | - | chr3_2:59110010-59110029 | None:intergenic | 35.0% | |
| AAACAATTGAGATACACACG+AGG | - | chr3_2:59110044-59110063 | None:intergenic | 35.0% | |
| GAATGAAATTGCGATGATGA+AGG | - | chr3_2:59110111-59110130 | None:intergenic | 35.0% | |
| TTAGCGAATGAAGAAGAAGA+AGG | - | chr3_2:59110178-59110197 | None:intergenic | 35.0% | |
| !!! | GAACGGTTTTGGTTTGAATT+TGG | - | chr3_2:59110203-59110222 | None:intergenic | 35.0% |
| TATGCACTTTCTGTGTGAAA+CGG | + | chr3_2:59110651-59110670 | Msa0414130:intron | 35.0% | |
| ! | TGTTTTCTACTATCCGCAAT+CGG | + | chr3_2:59110899-59110918 | Msa0414130:intron | 35.0% |
| !! | CAGAATATAGTCTCTGAAGT+CGG | + | chr3_2:59111224-59111243 | Msa0414130:intron | 35.0% |
| !! | CTTAGGAACAGAGTTGTTTT+TGG | + | chr3_2:59111328-59111347 | Msa0414130:CDS | 35.0% |
| !!! | AACAGAGTTGTTTTTGGACT+TGG | + | chr3_2:59111334-59111353 | Msa0414130:CDS | 35.0% |
| !!! | TTGTTTTTGGACTTGGCATT+GGG | + | chr3_2:59111341-59111360 | Msa0414130:CDS | 35.0% |
| GCATACCTTAATGTTTCCAT+TGG | + | chr3_2:59111571-59111590 | Msa0414130:intron | 35.0% | |
| AAGCACCAATGGAAACATTA+AGG | - | chr3_2:59111579-59111598 | None:intergenic | 35.0% | |
| TAATCTACACTCTAACTTCG+AGG | + | chr3_2:59111908-59111927 | Msa0414130:intron | 35.0% | |
| AATCTACACTCTAACTTCGA+GGG | + | chr3_2:59111909-59111928 | Msa0414130:intron | 35.0% | |
| AGAGAATGAGTTACTGAAGT+GGG | + | chr3_2:59111978-59111997 | Msa0414130:intron | 35.0% | |
| !! | ATTCTAGGAGAGTTTGTTAG+AGG | + | chr3_2:59112006-59112025 | Msa0414130:intron | 35.0% |
| ACGCGATTATTCTCTTGAAA+AGG | + | chr3_2:59112093-59112112 | Msa0414130:intron | 35.0% | |
| AGGAACATATTTCTCTGGTT+AGG | + | chr3_2:59112113-59112132 | Msa0414130:intron | 35.0% | |
| AGTGGAAATGCAAACTGAAA+TGG | - | chr3_2:59112159-59112178 | None:intergenic | 35.0% | |
| !! | GATAGCTTTAGCTATGAAGA+TGG | + | chr3_2:59112276-59112295 | Msa0414130:intron | 35.0% |
| ! | TTTAGGGCAATCTGTTATTC+TGG | + | chr3_2:59112427-59112446 | Msa0414130:intron | 35.0% |
| TTAGGGCAATCTGTTATTCT+GGG | + | chr3_2:59112428-59112447 | Msa0414130:intron | 35.0% | |
| !! | ATCTATTTCTGATTCATGCC+AGG | + | chr3_2:59112608-59112627 | Msa0414130:intron | 35.0% |
| ATCAATATGACCATGATACC+TGG | - | chr3_2:59112629-59112648 | None:intergenic | 35.0% | |
| ! | TGGTCATATTGATGTTTCTG+TGG | + | chr3_2:59112636-59112655 | Msa0414130:CDS | 35.0% |
| AAAAAGATTACTGAAGTCGC+CGG | + | chr3_2:59112915-59112934 | Msa0414130:intron | 35.0% | |
| ! | TCCTGCTTGAATCTTTTAGT+AGG | + | chr3_2:59113098-59113117 | Msa0414130:intron | 35.0% |
| TCCTACTAAAAGATTCAAGC+AGG | - | chr3_2:59113102-59113121 | None:intergenic | 35.0% | |
| TTGTAGGAATAGGAGAAACA+TGG | + | chr3_2:59113304-59113323 | Msa0414130:intron | 35.0% | |
| ! | AGCTGCAATAATGCTACTTA+TGG | - | chr3_2:59113388-59113407 | None:intergenic | 35.0% |
| GCTGATACATTTGCGTTTAT+TGG | + | chr3_2:59113405-59113424 | Msa0414130:CDS | 35.0% | |
| GATACATTTGCGTTTATTGG+TGG | + | chr3_2:59113408-59113427 | Msa0414130:CDS | 35.0% | |
| ! | ACAGCACAGTACTTTTGTAA+AGG | - | chr3_2:59113482-59113501 | None:intergenic | 35.0% |
| TTTGGACTTATACTGGTAAG+TGG | - | chr3_2:59113616-59113635 | None:intergenic | 35.0% | |
| TGTCTTCTTTGGACTTATAC+TGG | - | chr3_2:59113623-59113642 | None:intergenic | 35.0% | |
| GTATAAGTCCAAAGAAGACA+TGG | + | chr3_2:59113623-59113642 | Msa0414130:CDS | 35.0% | |
| ! | GAAAACTTTTGACAGGACAA+CGG | - | chr3_2:59113689-59113708 | None:intergenic | 35.0% |
| ! | TCCTGTCAAAAGTTTTCAGT+TGG | + | chr3_2:59113692-59113711 | Msa0414130:CDS | 35.0% |
| ! | GGAAAAACTTTTCCAACTAG+AGG | + | chr3_2:59113899-59113918 | Msa0414130:intron | 35.0% |
| CAGCATGTCTAGAAACTTTA+AGG | - | chr3_2:59113935-59113954 | None:intergenic | 35.0% | |
| ! | CTTAAAGTTTCTAGACATGC+TGG | + | chr3_2:59113933-59113952 | Msa0414130:intron | 35.0% |
| GAGAATTAGGTTTCTTCCTA+TGG | + | chr3_2:59114014-59114033 | Msa0414130:intron | 35.0% | |
| CTAACGAACAAATCTACATG+CGG | - | chr3_2:59114056-59114075 | None:intergenic | 35.0% | |
| TTTGTCAGTGTAATAGCTCT+TGG | + | chr3_2:59114243-59114262 | Msa0414130:intron | 35.0% | |
| TTTACCATGACCAGGTATTA+GGG | - | chr3_2:59114352-59114371 | None:intergenic | 35.0% | |
| ATTTACCATGACCAGGTATT+AGG | - | chr3_2:59114353-59114372 | None:intergenic | 35.0% | |
| CAGAAATATTTACCATGACC+AGG | - | chr3_2:59114360-59114379 | None:intergenic | 35.0% | |
| TTGATTTCATCTAATGCAGG+TGG | + | chr3_2:59114627-59114646 | Msa0414130:intron | 35.0% | |
| ! | AGCGGATAGTTATGTTTTCA+CGG | + | chr3_2:59114662-59114681 | Msa0414130:CDS | 35.0% |
| TGCATAAAATATGCAAGGTC+CGG | + | chr3_2:59114823-59114842 | Msa0414130:intron | 35.0% | |
| ! | GATATTTTACCTTGGATCAG+AGG | + | chr3_2:59115019-59115038 | Msa0414130:three_prime_UTR | 35.0% |
| ! | TCTTGGATTTGGAATGATGA+AGG | - | chr3_2:59115145-59115164 | None:intergenic | 35.0% |
| ! | AAGAGTATAAGGACCAAACA+AGG | + | chr3_2:59115208-59115227 | Msa0414130:three_prime_UTR | 35.0% |
| AGAGTATAAGGACCAAACAA+GGG | + | chr3_2:59115209-59115228 | Msa0414130:three_prime_UTR | 35.0% | |
| !! | TGGCTTTGAAAGAGATAGAA+CGG | + | chr3_2:59115270-59115289 | Msa0414130:three_prime_UTR | 35.0% |
| ! | TTTCCAGTACCGAACAAACA+AGG | + | chr3_2:59109954-59109973 | Msa0414130:five_prime_UTR | 40.0% |
| ! | TAACCTTGTTTGTTCGGTAC+TGG | - | chr3_2:59109960-59109979 | None:intergenic | 40.0% |
| ACCGAACAAACAAGGTTAGT+TGG | + | chr3_2:59109962-59109981 | Msa0414130:five_prime_UTR | 40.0% | |
| AACATTGGCAACAATGAACC+GGG | - | chr3_2:59110263-59110282 | None:intergenic | 40.0% | |
| GAACATTGGCAACAATGAAC+CGG | - | chr3_2:59110264-59110283 | None:intergenic | 40.0% | |
| CAATGTTCATCAACCTGAAC+CGG | + | chr3_2:59110276-59110295 | Msa0414130:CDS | 40.0% | |
| !! | ATTACCTTATGGGCATTGAG+TGG | - | chr3_2:59110313-59110332 | None:intergenic | 40.0% |
| ATAGTAGTGCCATAGAGTAG+AGG | + | chr3_2:59110758-59110777 | Msa0414130:intron | 40.0% | |
| !! | ATTTCTAGTGTTGCCGATTG+CGG | - | chr3_2:59110915-59110934 | None:intergenic | 40.0% |
| !!! | GTTGTTTTTGGACTTGGCAT+TGG | + | chr3_2:59111340-59111359 | Msa0414130:CDS | 40.0% |
| CATGACAAAAAGTGGCATCA+AGG | - | chr3_2:59111539-59111558 | None:intergenic | 40.0% | |
| TTGTCAGATGTAAGCACCAA+TGG | - | chr3_2:59111590-59111609 | None:intergenic | 40.0% | |
| AGGAAGAAACTGGAAGATCA+TGG | - | chr3_2:59111831-59111850 | None:intergenic | 40.0% | |
| ATCTACACTCTAACTTCGAG+GGG | + | chr3_2:59111910-59111929 | Msa0414130:intron | 40.0% | |
| GTAACTCATTCTCTCTCACA+TGG | - | chr3_2:59111972-59111991 | None:intergenic | 40.0% | |
| GAGAGAATGAGTTACTGAAG+TGG | + | chr3_2:59111977-59111996 | Msa0414130:intron | 40.0% | |
| GAGAATGAGTTACTGAAGTG+GGG | + | chr3_2:59111979-59111998 | Msa0414130:intron | 40.0% | |
| AGTTTACGGGTTCTATCATC+AGG | + | chr3_2:59112237-59112256 | Msa0414130:intron | 40.0% | |
| GTTTACGGGTTCTATCATCA+GGG | + | chr3_2:59112238-59112257 | Msa0414130:intron | 40.0% | |
| ATCAAGGCAGATCATGAAGA+AGG | - | chr3_2:59112377-59112396 | None:intergenic | 40.0% | |
| TAGGGCAATCTGTTATTCTG+GGG | + | chr3_2:59112429-59112448 | Msa0414130:intron | 40.0% | |
| !! | TGTTATTCTGGGGTTATGTG+TGG | + | chr3_2:59112439-59112458 | Msa0414130:intron | 40.0% |
| ! | TGGATATCTTCCCTGTTTCT+GGG | + | chr3_2:59112756-59112775 | Msa0414130:CDS | 40.0% |
| TACTTACTTGTGTTCAAGGC+TGG | - | chr3_2:59112808-59112827 | None:intergenic | 40.0% | |
| TCAGATACTGACCTAAGCTT+CGG | + | chr3_2:59112983-59113002 | Msa0414130:intron | 40.0% | |
| ! | GAAACATGGCCTTTTCTTCT+TGG | + | chr3_2:59113318-59113337 | Msa0414130:CDS | 40.0% |
| ! | ATTTGCGTTTATTGGTGGCA+AGG | + | chr3_2:59113413-59113432 | Msa0414130:CDS | 40.0% |
| ! | TTATTGGTGGCAAGGTATAC+AGG | + | chr3_2:59113421-59113440 | Msa0414130:intron | 40.0% |
| !! | AAAAGTACTGTGCTGTGTTG+TGG | + | chr3_2:59113486-59113505 | Msa0414130:intron | 40.0% |
| TGTATCTTCATGCAGGCATT+TGG | + | chr3_2:59113583-59113602 | Msa0414130:intron | 40.0% | |
| !! | ACATGGGAGGGTACTATTAT+AGG | + | chr3_2:59113640-59113659 | Msa0414130:CDS | 40.0% |
| ! | GCCAACTGAAAACTTTTGAC+AGG | - | chr3_2:59113696-59113715 | None:intergenic | 40.0% |
| GTGTACCTTAATGGTGATAC+AGG | - | chr3_2:59113718-59113737 | None:intergenic | 40.0% | |
| CGACATGTAGTGTACCTTAA+TGG | - | chr3_2:59113727-59113746 | None:intergenic | 40.0% | |
| ACCTTGCTTTCTCGAGAATT+AGG | + | chr3_2:59114001-59114020 | Msa0414130:intron | 40.0% | |
| ACCTAATTCTCGAGAAAGCA+AGG | - | chr3_2:59114005-59114024 | None:intergenic | 40.0% | |
| ! | CGCATGTAGATTTGTTCGTT+AGG | + | chr3_2:59114054-59114073 | Msa0414130:intron | 40.0% |
| GAGCATATAGTTGTTGCTCA+AGG | + | chr3_2:59114076-59114095 | Msa0414130:intron | 40.0% | |
| TTGGCGTTCTGACTTTCTTT+GGG | + | chr3_2:59114262-59114281 | Msa0414130:CDS | 40.0% | |
| ! | ACTTTCTTTGGGTCCGTTTT+TGG | + | chr3_2:59114273-59114292 | Msa0414130:CDS | 40.0% |
| TTCCGTGAGATCACCAAAAA+CGG | - | chr3_2:59114289-59114308 | None:intergenic | 40.0% | |
| TCAATGATTAAACGCGATGC+TGG | + | chr3_2:59114309-59114328 | Msa0414130:CDS | 40.0% | |
| !!! | ACTGCGCTGTTTGTTTTAAC+AGG | - | chr3_2:59114548-59114567 | None:intergenic | 40.0% |
| ! | GCGGATAGTTATGTTTTCAC+GGG | + | chr3_2:59114663-59114682 | Msa0414130:CDS | 40.0% |
| !! | CGGCAGAAAGGTTTTGATAA+AGG | - | chr3_2:59114703-59114722 | None:intergenic | 40.0% |
| !! | AAAACCTTTCTGCCGCTTTA+CGG | + | chr3_2:59114708-59114727 | Msa0414130:CDS | 40.0% |
| CAATGTCATACTCCGTAAAG+CGG | - | chr3_2:59114723-59114742 | None:intergenic | 40.0% | |
| GCATAAAATATGCAAGGTCC+GGG | + | chr3_2:59114824-59114843 | Msa0414130:intron | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | + | chr3_2:59114825-59114844 | Msa0414130:intron | 40.0% | |
| !!! | ATCTTTTTTTGGTGGTGGCT+GGG | - | chr3_2:59114858-59114877 | None:intergenic | 40.0% |
| !!! | AATCTTTTTTTGGTGGTGGC+TGG | - | chr3_2:59114859-59114878 | None:intergenic | 40.0% |
| ACAGTTGGGCTAAATCTCAA+CGG | + | chr3_2:59114925-59114944 | Msa0414130:intron | 40.0% | |
| ! | AACTCGCGGATATTTTACCT+TGG | + | chr3_2:59115011-59115030 | Msa0414130:three_prime_UTR | 40.0% |
| TTCATCAGAAAAAGAGCAGC+AGG | + | chr3_2:59115114-59115133 | Msa0414130:three_prime_UTR | 40.0% | |
| TGGTCAACTTGTCTTGGATT+TGG | - | chr3_2:59115156-59115175 | None:intergenic | 40.0% | |
| GAACTATGGTCAACTTGTCT+TGG | - | chr3_2:59115162-59115181 | None:intergenic | 40.0% | |
| CAATTGAGATACACACGAGG+AGG | - | chr3_2:59110041-59110060 | None:intergenic | 45.0% | |
| GAAGAGAAGGAGCGGTAATT+GGG | - | chr3_2:59110133-59110152 | None:intergenic | 45.0% | |
| AGAAGAGAAGGAGCGGTAAT+TGG | - | chr3_2:59110134-59110153 | None:intergenic | 45.0% | |
| GAGATTGAGAAGAGAAGGAG+CGG | - | chr3_2:59110141-59110160 | None:intergenic | 45.0% | |
| TCAAACCAAAACCGTTCCTG+CGG | + | chr3_2:59110206-59110225 | Msa0414130:CDS | 45.0% | |
| ! | GTTGAACCGGTTCAGGTATT+CGG | - | chr3_2:59110240-59110259 | None:intergenic | 45.0% |
| ACATTGGCAACAATGAACCG+GGG | - | chr3_2:59110262-59110281 | None:intergenic | 45.0% | |
| !! | CGGTTCAGGTTGATGAACAT+TGG | - | chr3_2:59110278-59110297 | None:intergenic | 45.0% |
| !! | CGGTGCTACTAAGGAGTTAA+TGG | + | chr3_2:59111244-59111263 | Msa0414130:intron | 45.0% |
| AAGAGCGAATCCTCCTACAA+GGG | - | chr3_2:59111283-59111302 | None:intergenic | 45.0% | |
| GCTCTTGAAATCTCAACTGC+AGG | + | chr3_2:59111297-59111316 | Msa0414130:CDS | 45.0% | |
| ! | AACTGCAGGTTAGTCAGCTT+AGG | + | chr3_2:59111311-59111330 | Msa0414130:CDS | 45.0% |
| ! | TGGACTTGGCATTGGGATTT+CGG | + | chr3_2:59111348-59111367 | Msa0414130:CDS | 45.0% |
| !!! | TTCGGCTGGAGGTATTGTTT+TGG | + | chr3_2:59111366-59111385 | Msa0414130:CDS | 45.0% |
| !!! | TATTGTTTTGGCCGGAGGAT+GGG | + | chr3_2:59111378-59111397 | Msa0414130:CDS | 45.0% |
| !! | TTTGAATTGGTTCGGAGTCG+AGG | + | chr3_2:59111451-59111470 | Msa0414130:CDS | 45.0% |
| CCTTAGCACTAGGAAGAAAC+TGG | - | chr3_2:59111841-59111860 | None:intergenic | 45.0% | |
| CCAGTTTCTTCCTAGTGCTA+AGG | + | chr3_2:59111838-59111857 | Msa0414130:intron | 45.0% | |
| CTAACTGATGCCTTAGCACT+AGG | - | chr3_2:59111851-59111870 | None:intergenic | 45.0% | |
| !! | CTCTCTTCTAGAATATGCCC+AGG | - | chr3_2:59111944-59111963 | None:intergenic | 45.0% |
| ! | GGGCATATTCTAGAAGAGAG+TGG | + | chr3_2:59111944-59111963 | Msa0414130:intron | 45.0% |
| ATCTGAGTAGAGAGTAGGGA+AGG | + | chr3_2:59112040-59112059 | Msa0414130:intron | 45.0% | |
| TCTGAGTAGAGAGTAGGGAA+GGG | + | chr3_2:59112041-59112060 | Msa0414130:intron | 45.0% | |
| GGTTAGGAGTTCTTGAACTC+TGG | + | chr3_2:59112129-59112148 | Msa0414130:intron | 45.0% | |
| CTGATTCATGCCAGGTATCA+TGG | + | chr3_2:59112616-59112635 | Msa0414130:intron | 45.0% | |
| !!! | GGCTTCTGCTGCTTTTGTTT+TGG | + | chr3_2:59112657-59112676 | Msa0414130:CDS | 45.0% |
| !!! | TGCTGCTTTTGTTTTGGCCA+TGG | + | chr3_2:59112663-59112682 | Msa0414130:CDS | 45.0% |
| TCTTTGCACGAGTAATGCCA+TGG | - | chr3_2:59112683-59112702 | None:intergenic | 45.0% | |
| ATGGCATTACTCGTGCAAAG+AGG | + | chr3_2:59112682-59112701 | Msa0414130:CDS | 45.0% | |
| ACTGCTTAGCTGTGCAAAAC+GGG | - | chr3_2:59112713-59112732 | None:intergenic | 45.0% | |
| CACTGCTTAGCTGTGCAAAA+CGG | - | chr3_2:59112714-59112733 | None:intergenic | 45.0% | |
| AGCTAAGCAGTGCCATCTTT+GGG | + | chr3_2:59112722-59112741 | Msa0414130:CDS | 45.0% | |
| GTGGATATCTTCCCTGTTTC+TGG | + | chr3_2:59112755-59112774 | Msa0414130:CDS | 45.0% | |
| CGAAGCTTAACCCAGAAACA+GGG | - | chr3_2:59112769-59112788 | None:intergenic | 45.0% | |
| TCGAAGCTTAACCCAGAAAC+AGG | - | chr3_2:59112770-59112789 | None:intergenic | 45.0% | |
| TTCTGGGTTAAGCTTCGATG+TGG | + | chr3_2:59112772-59112791 | Msa0414130:CDS | 45.0% | |
| AGTTCTGCCCATTGTGAAGT+TGG | + | chr3_2:59112862-59112881 | Msa0414130:intron | 45.0% | |
| GTTCTGCCCATTGTGAAGTT+GGG | + | chr3_2:59112863-59112882 | Msa0414130:intron | 45.0% | |
| GATCCTCCCAACTTCACAAT+GGG | - | chr3_2:59112872-59112891 | None:intergenic | 45.0% | |
| TGATCCTCCCAACTTCACAA+TGG | - | chr3_2:59112873-59112892 | None:intergenic | 45.0% | |
| ! | ACATGGCCTTTTCTTCTTGG+TGG | + | chr3_2:59113321-59113340 | Msa0414130:CDS | 45.0% |
| GCTTGACCACCAAGAAGAAA+AGG | - | chr3_2:59113330-59113349 | None:intergenic | 45.0% | |
| ! | TTCTTGGTGGTCAAGCTCAT+TGG | + | chr3_2:59113334-59113353 | Msa0414130:CDS | 45.0% |
| TCATTGGACAGTAGGTCTTG+TGG | + | chr3_2:59113350-59113369 | Msa0414130:CDS | 45.0% | |
| AAGTCCAAAGAAGACATGGG+AGG | + | chr3_2:59113627-59113646 | Msa0414130:CDS | 45.0% | |
| AGTCCAAAGAAGACATGGGA+GGG | + | chr3_2:59113628-59113647 | Msa0414130:CDS | 45.0% | |
| ! | GTTGGCCTGTATCACCATTA+AGG | + | chr3_2:59113710-59113729 | Msa0414130:CDS | 45.0% |
| TTTGCATGGTCGCCTTCTTA+TGG | + | chr3_2:59113877-59113896 | Msa0414130:intron | 45.0% | |
| TTGCATGGTCGCCTTCTTAT+GGG | + | chr3_2:59113878-59113897 | Msa0414130:intron | 45.0% | |
| GGAACTTCGTTTCCTCTAGT+TGG | - | chr3_2:59113914-59113933 | None:intergenic | 45.0% | |
| TTCTAGACATGCTGGCATTC+AGG | + | chr3_2:59113941-59113960 | Msa0414130:intron | 45.0% | |
| TGTATACACCACGTGACCAT+AGG | - | chr3_2:59114033-59114052 | None:intergenic | 45.0% | |
| CTTGGCGTTCTGACTTTCTT+TGG | + | chr3_2:59114261-59114280 | Msa0414130:CDS | 45.0% | |
| !!! | GTCCGTTTTTGGTGATCTCA+CGG | + | chr3_2:59114284-59114303 | Msa0414130:CDS | 45.0% |
| CGGAGTATGACATTGAACAG+TGG | + | chr3_2:59114728-59114747 | Msa0414130:exon | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | + | chr3_2:59114796-59114815 | Msa0414130:intron | 45.0% |
| !!! | TCTTTTTTTGGTGGTGGCTG+GGG | - | chr3_2:59114857-59114876 | None:intergenic | 45.0% |
| !!! | TGTTTTATTTTATTTTATTT+GGG | + | chr3_2:59110381-59110400 | Msa0414130:intron | 5.0% |
| TTGAGATACACACGAGGAGG+AGG | - | chr3_2:59110038-59110057 | None:intergenic | 50.0% | |
| !! | AGAGCGAGTTGGTGAGTTGT+AGG | - | chr3_2:59110087-59110106 | None:intergenic | 50.0% |
| ATGATGAAGGGAGAGCGAGT+TGG | - | chr3_2:59110098-59110117 | None:intergenic | 50.0% | |
| CACTCTCCGAATACCTGAAC+CGG | + | chr3_2:59110231-59110250 | Msa0414130:CDS | 50.0% | |
| ACAATGAACCGGGGTTGAAC+CGG | - | chr3_2:59110253-59110272 | None:intergenic | 50.0% | |
| TCCTCCACTCAATGCCCATA+AGG | + | chr3_2:59110306-59110325 | Msa0414130:CDS | 50.0% | |
| !! | ACCTTATGGGCATTGAGTGG+AGG | - | chr3_2:59110310-59110329 | None:intergenic | 50.0% |
| !! | CTCTGAAGTCGGTGCTACTA+AGG | + | chr3_2:59111235-59111254 | Msa0414130:intron | 50.0% |
| ! | AAGCCGTGATTTGCCCTTGT+AGG | + | chr3_2:59111267-59111286 | Msa0414130:intron | 50.0% |
| CCTCCTACAAGGGCAAATCA+CGG | - | chr3_2:59111273-59111292 | None:intergenic | 50.0% | |
| CAAGAGCGAATCCTCCTACA+AGG | - | chr3_2:59111284-59111303 | None:intergenic | 50.0% | |
| !!! | GCTGGAGGTATTGTTTTGGC+CGG | + | chr3_2:59111370-59111389 | Msa0414130:CDS | 50.0% |
| !!! | GTATTGTTTTGGCCGGAGGA+TGG | + | chr3_2:59111377-59111396 | Msa0414130:CDS | 50.0% |
| AGCAAAGACAACTGCAGCCA+TGG | - | chr3_2:59111416-59111435 | None:intergenic | 50.0% | |
| ATGGCTGCAGTTGTCTTTGC+TGG | + | chr3_2:59111415-59111434 | Msa0414130:CDS | 50.0% | |
| CGGAGTCGAGGAATTACAGA+AGG | + | chr3_2:59111463-59111482 | Msa0414130:CDS | 50.0% | |
| CTGAAGTGGGGCTAGATTCT+AGG | + | chr3_2:59111991-59112010 | Msa0414130:intron | 50.0% | |
| GCTCAAGAGCTCTACAGTAG+TGG | - | chr3_2:59112177-59112196 | None:intergenic | 50.0% | |
| CTGCTTAGCTGTGCAAAACG+GGG | - | chr3_2:59112712-59112731 | None:intergenic | 50.0% | |
| CAGCTAAGCAGTGCCATCTT+TGG | + | chr3_2:59112721-59112740 | Msa0414130:CDS | 50.0% | |
| GGTCAAGCTCATTGGACAGT+AGG | + | chr3_2:59113342-59113361 | Msa0414130:CDS | 50.0% | |
| GTACCCTCCCATGTCTTCTT+TGG | - | chr3_2:59113634-59113653 | None:intergenic | 50.0% | |
| GGTTTCTTCCTATGGTCACG+TGG | + | chr3_2:59114022-59114041 | Msa0414130:intron | 50.0% | |
| GATGCTGGTGTGAAAGACTC+CGG | + | chr3_2:59114324-59114343 | Msa0414130:CDS | 50.0% | |
| ATGACCAGGTATTAGGGAGC+CGG | - | chr3_2:59114346-59114365 | None:intergenic | 50.0% | |
| ! | AGGTGGAGTACTAGACAGAG+CGG | + | chr3_2:59114644-59114663 | Msa0414130:intron | 50.0% |
| TACTCCGTAAAGCGGCAGAA+AGG | - | chr3_2:59114715-59114734 | None:intergenic | 50.0% | |
| GCTAAGCTCACGAGGACAAA+TGG | - | chr3_2:59114786-59114805 | None:intergenic | 50.0% | |
| GATTCTCGTCCTCTGATCCA+AGG | - | chr3_2:59115031-59115050 | None:intergenic | 50.0% | |
| CGGTTCAGGTATTCGGAGAG+TGG | - | chr3_2:59110233-59110252 | None:intergenic | 55.0% | |
| ! | TACCTGAACCGGTTCAACCC+CGG | + | chr3_2:59110242-59110261 | Msa0414130:CDS | 55.0% |
| TTGAGTGGAGGAAGACGGTC+CGG | - | chr3_2:59110298-59110317 | None:intergenic | 55.0% | |
| !! | GGGCATTGAGTGGAGGAAGA+CGG | - | chr3_2:59110303-59110322 | None:intergenic | 55.0% |
| ! | CCGTGATTTGCCCTTGTAGG+AGG | + | chr3_2:59111270-59111289 | Msa0414130:intron | 55.0% |
| ! | CTTGGCATTGGGATTTCGGC+TGG | + | chr3_2:59111352-59111371 | Msa0414130:CDS | 55.0% |
| !!! | GGAGGTATTGTTTTGGCCGG+AGG | + | chr3_2:59111373-59111392 | Msa0414130:CDS | 55.0% |
| TGCCGCAAAAACCCATCCTC+CGG | - | chr3_2:59111392-59111411 | None:intergenic | 55.0% | |
| ! | ATGGGTTTTTGCGGCAGCCA+TGG | + | chr3_2:59111396-59111415 | Msa0414130:CDS | 55.0% |
| CAGACTCGTGACACGTATCG+CGG | - | chr3_2:59111502-59111521 | None:intergenic | 55.0% | |
| CACTCTAACTTCGAGGGGTC+AGG | + | chr3_2:59111915-59111934 | Msa0414130:intron | 55.0% | |
| CTGCCCATTGTGAAGTTGGG+AGG | + | chr3_2:59112866-59112885 | Msa0414130:intron | 55.0% | |
| GGCTCCCTAATACCTGGTCA+TGG | + | chr3_2:59114345-59114364 | Msa0414130:CDS | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr3_2:59114794-59114813 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr3_2:59114791-59114810 | Msa0414130:intron | 55.0% | |
| ! | GTGGACCGCAGGAACGGTTT+TGG | - | chr3_2:59110214-59110233 | None:intergenic | 60.0% |
| GTATTCGGAGAGTGGACCGC+AGG | - | chr3_2:59110225-59110244 | None:intergenic | 60.0% | |
| ! | AACCGGGGTTGAACCGGTTC+AGG | - | chr3_2:59110247-59110266 | None:intergenic | 60.0% |
| ! | GGCATTGGGATTTCGGCTGG+AGG | + | chr3_2:59111355-59111374 | Msa0414130:CDS | 60.0% |
| !! | GGCCGGAGGATGGGTTTTTG+CGG | + | chr3_2:59111387-59111406 | Msa0414130:CDS | 60.0% |
| ACTCGTGACACGTATCGCGG+AGG | - | chr3_2:59111499-59111518 | None:intergenic | 60.0% | |
| TTCGAGGGGTCAGGACACCT+GGG | + | chr3_2:59111924-59111943 | Msa0414130:intron | 60.0% | |
| GACTCCGGCTCCCTAATACC+TGG | + | chr3_2:59114339-59114358 | Msa0414130:CDS | 60.0% | |
| CGGAGAGTGGACCGCAGGAA+CGG | - | chr3_2:59110220-59110239 | None:intergenic | 65.0% | |
| GGAGGAAGACGGTCCGGTTC+AGG | - | chr3_2:59110292-59110311 | None:intergenic | 65.0% | |
| CGTGACACGTATCGCGGAGG+AGG | - | chr3_2:59111496-59111515 | None:intergenic | 65.0% | |
| CTTCGAGGGGTCAGGACACC+TGG | + | chr3_2:59111923-59111942 | Msa0414130:intron | 65.0% | |
| GGTGGCTGGGGTTTGAACCC+CGG | - | chr3_2:59114845-59114864 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 59109896 | 59115472 | 59109896 | ID=Msa0414130;Name=Msa0414130 |
| chr3_2 | mRNA | 59109896 | 59115472 | 59109896 | ID=Msa0414130-mRNA-1;Parent=Msa0414130;Name=Msa0414130-mRNA-1;_AED=0.10;_eAED=0.10;_QI=180|1|1|1|0.85|0.75|8|499|392 |
| chr3_2 | exon | 59109896 | 59110327 | 59109896 | ID=Msa0414130-mRNA-1:exon:12298;Parent=Msa0414130-mRNA-1 |
| chr3_2 | exon | 59111289 | 59111557 | 59111289 | ID=Msa0414130-mRNA-1:exon:12299;Parent=Msa0414130-mRNA-1 |
| chr3_2 | exon | 59112630 | 59112820 | 59112630 | ID=Msa0414130-mRNA-1:exon:12300;Parent=Msa0414130-mRNA-1 |
| chr3_2 | exon | 59113310 | 59113434 | 59113310 | ID=Msa0414130-mRNA-1:exon:12301;Parent=Msa0414130-mRNA-1 |
| chr3_2 | exon | 59113598 | 59113731 | 59113598 | ID=Msa0414130-mRNA-1:exon:12302;Parent=Msa0414130-mRNA-1 |
| chr3_2 | exon | 59114251 | 59114366 | 59114251 | ID=Msa0414130-mRNA-1:exon:12303;Parent=Msa0414130-mRNA-1 |
| chr3_2 | exon | 59114646 | 59114749 | 59114646 | ID=Msa0414130-mRNA-1:exon:12304;Parent=Msa0414130-mRNA-1 |
| chr3_2 | exon | 59114986 | 59115472 | 59114986 | ID=Msa0414130-mRNA-1:exon:12305;Parent=Msa0414130-mRNA-1 |
| chr3_2 | five_prime_UTR | 59109896 | 59110075 | 59109896 | ID=Msa0414130-mRNA-1:five_prime_utr;Parent=Msa0414130-mRNA-1 |
| chr3_2 | CDS | 59110076 | 59110327 | 59110076 | ID=Msa0414130-mRNA-1:cds;Parent=Msa0414130-mRNA-1 |
| chr3_2 | CDS | 59111289 | 59111557 | 59111289 | ID=Msa0414130-mRNA-1:cds;Parent=Msa0414130-mRNA-1 |
| chr3_2 | CDS | 59112630 | 59112820 | 59112630 | ID=Msa0414130-mRNA-1:cds;Parent=Msa0414130-mRNA-1 |
| chr3_2 | CDS | 59113310 | 59113434 | 59113310 | ID=Msa0414130-mRNA-1:cds;Parent=Msa0414130-mRNA-1 |
| chr3_2 | CDS | 59113598 | 59113731 | 59113598 | ID=Msa0414130-mRNA-1:cds;Parent=Msa0414130-mRNA-1 |
| chr3_2 | CDS | 59114251 | 59114366 | 59114251 | ID=Msa0414130-mRNA-1:cds;Parent=Msa0414130-mRNA-1 |
| chr3_2 | CDS | 59114646 | 59114737 | 59114646 | ID=Msa0414130-mRNA-1:cds;Parent=Msa0414130-mRNA-1 |
| chr3_2 | three_prime_UTR | 59114738 | 59114749 | 59114738 | ID=Msa0414130-mRNA-1:three_prime_utr;Parent=Msa0414130-mRNA-1 |
| chr3_2 | three_prime_UTR | 59114986 | 59115472 | 59114986 | ID=Msa0414130-mRNA-1:three_prime_utr;Parent=Msa0414130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
