AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0552670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552670 MtrunA17_Chr4g0038211 97.980 396 7 1 1 395 1 396 0.0 794
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552670 AT5G23120.2 88.415 328 38 0 68 395 99 426 0.0 611
Msa0552670 AT5G23120.1 88.415 328 38 0 68 395 76 403 0.0 610

Find 128 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCCAAGACGTTAGTTATT+TGG 0.123022 4_1:+49328004 Msa0552670:five_prime_UTR
TCTTATGCATTACTTGTAAT+TGG 0.247936 4_1:-49334538 None:intergenic
CGCCAAGACGTTAGTTATTT+GGG 0.261478 4_1:+49328005 Msa0552670:five_prime_UTR
TCCCATGTTCTGGATTCTTC+TGG 0.285677 4_1:-49331210 None:intergenic
CAATTGGAAGGCTGCTGTTC+AGG 0.287529 4_1:+49330076 Msa0552670:CDS
TTCTGCAATGAACTGTCTTC+TGG 0.287847 4_1:-49328234 None:intergenic
TACTTAGGTGAGTTATTTAC+AGG 0.289326 4_1:-49334568 None:intergenic
GGGAACGAGGCAAACCCTTT+TGG 0.313718 4_1:+49329447 Msa0552670:CDS
CAGCTCTCCATCCCATGTTC+TGG 0.319178 4_1:-49331220 None:intergenic
CGGTGTCGGCTACTCTTAAT+AGG 0.320019 4_1:+49330102 Msa0552670:CDS
TGACCATGGTTAGGATCTTC+AGG 0.343300 4_1:-49328380 None:intergenic
AACCACGAAGCTTCGAGGTC+TGG 0.349790 4_1:-49328186 None:intergenic
GACAAGAAGGGATTTGTATT+GGG 0.359279 4_1:+49333439 Msa0552670:CDS
CCAATTGTATCCTCTGTTTG+AGG 0.361796 4_1:-49330060 None:intergenic
TGCTGAACTTCCTGGTGATA+TGG 0.362801 4_1:+49329651 Msa0552670:CDS
TCCTGATGCTGGAGAGAGTT+GGG 0.369099 4_1:+49329612 Msa0552670:CDS
CCACTCAGTGCTGAACTTCC+TGG 0.370960 4_1:+49329643 Msa0552670:CDS
TGACAAGAAGGGATTTGTAT+TGG 0.379966 4_1:+49333438 Msa0552670:CDS
TTAGTATTGAAGAGAGCTAT+TGG 0.383191 4_1:+49334216 Msa0552670:three_prime_UTR
CAGGATGAGGCTTGGGCAGC+AGG 0.383928 4_1:+49332508 Msa0552670:intron
GACGTTAGTTATTTGGGATA+AGG 0.384050 4_1:+49328011 Msa0552670:five_prime_UTR
GGAGAGCTGATGGTGGTCTC+TGG 0.387735 4_1:+49331234 Msa0552670:CDS
AGAACAACACCAGGATCAAT+AGG 0.404837 4_1:-49328338 None:intergenic
ACCACGAAGCTTCGAGGTCT+GGG 0.406731 4_1:-49328185 None:intergenic
CTCCATCTTTAGTCTCCAAA+AGG 0.407511 4_1:-49329462 None:intergenic
ATTCTCTTGAGAACTAATAA+TGG 0.408224 4_1:+49332541 Msa0552670:CDS
GGAGTGTACAACAGAATTGC+AGG 0.409262 4_1:-49329592 None:intergenic
TCCCAACTCTCTCCAGCATC+AGG 0.409768 4_1:-49329613 None:intergenic
GGATTTGTATTGGGAAATGA+TGG 0.410591 4_1:+49333448 Msa0552670:CDS
CTAAAGATGGAGGAAGAACT+TGG 0.410832 4_1:+49329473 Msa0552670:CDS
GCTTGGGCAGCAGGTGGCAG+TGG 0.414180 4_1:+49332517 Msa0552670:CDS
ACAGATAACTGAAGAATTTG+AGG 0.416527 4_1:+49332039 Msa0552670:intron
CATGACCTGGGAGCCTGGTC+AGG 0.417923 4_1:+49330577 Msa0552670:CDS
AGGAAATTCCTGTTCAAAGC+CGG 0.433921 4_1:+49332059 Msa0552670:CDS
GATACATTGGTGAAGTACTT+AGG 0.434583 4_1:-49334583 None:intergenic
CTGAAGATACTCTTTCTGAA+TGG 0.436065 4_1:+49328300 Msa0552670:CDS
TTTAATTCAATCAGCTTCAA+AGG 0.437902 4_1:+49329544 Msa0552670:CDS
ATGAATTCAGGATGAGGCTT+GGG 0.443791 4_1:+49332501 Msa0552670:intron
CCTCAAACAGAGGATACAAT+TGG 0.450180 4_1:+49330060 Msa0552670:CDS
ACAGTTTCTAGTGGTATTAG+TGG 0.451172 4_1:+49330467 Msa0552670:CDS
TGAAGATACTCTTTCTGAAT+GGG 0.453872 4_1:+49328301 Msa0552670:CDS
AATGAACTGTCTTCTGGTTC+TGG 0.453938 4_1:-49328228 None:intergenic
TTCTACATGACCTGGGAGCC+TGG 0.456770 4_1:+49330572 Msa0552670:CDS
TGTTCCTTCTTTCGTTCCAA+TGG 0.460626 4_1:+49328073 Msa0552670:exon
AAATGTGTAGGTATACATAA+AGG 0.461448 4_1:+49329983 Msa0552670:intron
TCCCAGACCTCGAAGCTTCG+TGG 0.469085 4_1:+49328184 Msa0552670:CDS
TGAATGATGGATTTAGAAGA+AGG 0.472189 4_1:-49328158 None:intergenic
GGTCTCTGGCTTCTTGTTCG+TGG 0.472681 4_1:+49331248 Msa0552670:CDS
GGGAAAGAAGGATGGATTGT+GGG 0.472809 4_1:+49329565 Msa0552670:CDS
CGTGCTTGTTCCTTCTCAGT+TGG 0.474602 4_1:+49328271 Msa0552670:CDS
GAAGGCTGCTGTTCAGGAAT+CGG 0.481979 4_1:+49330082 Msa0552670:CDS
CTAGGCTTCTACATTACAAC+AGG 0.484582 4_1:-49334380 None:intergenic
AAATGATTATGACCATGGTT+AGG 0.486803 4_1:-49328389 None:intergenic
GGAGTCTTGCTTCGCTACCT+TGG 0.487018 4_1:+49333469 Msa0552670:CDS
TTAATTCAATCAGCTTCAAA+GGG 0.489001 4_1:+49329545 Msa0552670:CDS
CTAATAATGGTGGCAAGTCA+TGG 0.490904 4_1:+49332554 Msa0552670:CDS
GGAAATTCCTGTTCAAAGCC+GGG 0.494616 4_1:+49332060 Msa0552670:CDS
CCTCACCTGACCAGGCTCCC+AGG 0.496515 4_1:-49330582 None:intergenic
GCTTTAACCACGAAGCTTCG+AGG 0.497087 4_1:-49328191 None:intergenic
CCAAATAACTAACGTCTTGG+CGG 0.498516 4_1:-49328004 None:intergenic
CTGGCAACTGCTCTGTTATG+TGG 0.499429 4_1:-49331191 None:intergenic
ATCAGCTTCAAAGGGAAAGA+AGG 0.505308 4_1:+49329553 Msa0552670:CDS
GAAGAAGGTAGTTGAGATAA+CGG 0.506695 4_1:-49328143 None:intergenic
GTTTATCTACCTATTGATCC+TGG 0.509773 4_1:+49328329 Msa0552670:CDS
AGTGGTGCAAGCTATTACAC+TGG 0.515102 4_1:+49330485 Msa0552670:CDS
CAGGTTCATTGATGACAAGA+AGG 0.519980 4_1:+49333426 Msa0552670:intron
GGTTAGAGCTTTATTTAGCA+TGG 0.520870 4_1:+49333490 Msa0552670:exon
TATGAATTCAGGATGAGGCT+TGG 0.522277 4_1:+49332500 Msa0552670:intron
CTGTTGTACACTCCTGATGC+TGG 0.524887 4_1:+49329601 Msa0552670:CDS
GGGTTTGGCATTCTTGATGT+CGG 0.525167 4_1:+49332082 Msa0552670:CDS
TCAGACTTTGCCAACTGAGA+AGG 0.529755 4_1:-49328281 None:intergenic
AGTAAAAGCCTCACCTGACC+AGG 0.530594 4_1:-49330590 None:intergenic
CTCCTGATGCTGGAGAGAGT+TGG 0.533505 4_1:+49329611 Msa0552670:CDS
TAATGACAAGAGTGCGGAGA+TGG 0.534559 4_1:+49330010 Msa0552670:CDS
AGGTTCATTGATGACAAGAA+GGG 0.535774 4_1:+49333427 Msa0552670:intron
ATCCCAAATAACTAACGTCT+TGG 0.536615 4_1:-49328007 None:intergenic
GTCGCCATTGGAACGAAAGA+AGG 0.537847 4_1:-49328077 None:intergenic
GCTCTCTTCAATACTAAGCA+TGG 0.539098 4_1:-49334210 None:intergenic
CAAATAACTAACGTCTTGGC+GGG 0.539582 4_1:-49328003 None:intergenic
GTGAACTGCAGAGTCGCCAT+TGG 0.541473 4_1:-49328089 None:intergenic
CTCTTCAGAACAGTTTCTAG+TGG 0.545286 4_1:+49330458 Msa0552670:intron
AGGGAAAGAAGGATGGATTG+TGG 0.545951 4_1:+49329564 Msa0552670:CDS
TCCATCTTTAGTCTCCAAAA+GGG 0.548159 4_1:-49329461 None:intergenic
AAATCTTCATCTTCTGCGGA+TGG 0.551204 4_1:-49329511 None:intergenic
GTTAAAATCTTCATCTTCTG+CGG 0.555309 4_1:-49329515 None:intergenic
GAAGAATCCAGAACATGGGA+TGG 0.558266 4_1:+49331213 Msa0552670:CDS
AACTGTCTTCTGGTTCTGGA+AGG 0.558899 4_1:-49328224 None:intergenic
GCTTCAAAGGGAAAGAAGGA+TGG 0.564781 4_1:+49329557 Msa0552670:CDS
TAATAATGGTGGCAAGTCAT+GGG 0.567435 4_1:+49332555 Msa0552670:CDS
AGGTCTGGGAGAATGAATGA+TGG 0.567907 4_1:-49328171 None:intergenic
TGCCAGAAGAATCCAGAACA+TGG 0.568338 4_1:+49331208 Msa0552670:CDS
GCTAAATAAAGCTCTAACCA+AGG 0.573284 4_1:-49333486 None:intergenic
GCGGAGATGGTGACAGATGA+AGG 0.574878 4_1:+49330023 Msa0552670:CDS
TGCTGTTCAGGAATCGGTGT+CGG 0.575734 4_1:+49330088 Msa0552670:CDS
TGTTGTCAGCAGCTTTGTCA+CGG 0.578481 4_1:-49332579 None:intergenic
ACTGCAACATACCTTCCATC+GGG 0.579159 4_1:-49330533 None:intergenic
ATATATGTTACCTCAAACAG+AGG 0.581515 4_1:+49330050 Msa0552670:CDS
GTGGCAACTTCTACATGACC+TGG 0.584090 4_1:+49330564 Msa0552670:CDS
GACTGCAACATACCTTCCAT+CGG 0.584903 4_1:-49330534 None:intergenic
CTCTGGCTTCTTGTTCGTGG+AGG 0.590994 4_1:+49331251 Msa0552670:CDS
GATGAGGCTTGGGCAGCAGG+TGG 0.600534 4_1:+49332511 Msa0552670:CDS
AGCATATATACCATATCACC+AGG 0.604158 4_1:-49329661 None:intergenic
ATTTAAATGTAATAATAGCA+TGG 0.604825 4_1:-49334344 None:intergenic
GAAATTCCTGTTCAAAGCCG+GGG 0.606014 4_1:+49332061 Msa0552670:CDS
CATCAAGAATGCCAAACCCC+CGG 0.606370 4_1:-49332078 None:intergenic
GTTCCTGAAGATCCTAACCA+TGG 0.609851 4_1:+49328377 Msa0552670:CDS
TCAATCGATCTCCCGATGGA+AGG 0.610839 4_1:+49330522 Msa0552670:CDS
ATGCTGGAGAGAGTTGGGAA+AGG 0.633423 4_1:+49329617 Msa0552670:CDS
CTCTTGAGAACTAATAATGG+TGG 0.633424 4_1:+49332544 Msa0552670:CDS
TAAAGATGGAGGAAGAACTT+GGG 0.633471 4_1:+49329474 Msa0552670:CDS
AACATGGGATGGAGAGCTGA+TGG 0.634621 4_1:+49331224 Msa0552670:CDS
AGTCGTTGAAGCTATGCACT+AGG 0.634966 4_1:-49334398 None:intergenic
GCCAGAAGAATCCAGAACAT+GGG 0.641481 4_1:+49331209 Msa0552670:CDS
AGGTCATGTAGAAGTTGCCA+CGG 0.643318 4_1:-49330562 None:intergenic
AAATTCCTGTTCAAAGCCGG+GGG 0.646079 4_1:+49332062 Msa0552670:CDS
AAACAGAGGATACAATTGGA+AGG 0.654671 4_1:+49330064 Msa0552670:CDS
TGATGTCGGATATCGTTCAA+CGG 0.658874 4_1:+49332096 Msa0552670:CDS
TGGCAACTTCTACATGACCT+GGG 0.659223 4_1:+49330565 Msa0552670:CDS
TATGTTGCAGTCTCAAGCCG+TGG 0.664230 4_1:+49330545 Msa0552670:CDS
ATATCAAGAAGAACAACACC+AGG 0.666129 4_1:-49328347 None:intergenic
AACAAGCACGGATATAGCAG+TGG 0.669152 4_1:-49328258 None:intergenic
GGCAACTAATGACAAGAGTG+CGG 0.670995 4_1:+49330004 Msa0552670:CDS
ACTGTCAATCGATCTCCCGA+TGG 0.671901 4_1:+49330518 Msa0552670:CDS
TCTGCGGATGGTATAGAACG+TGG 0.679981 4_1:-49329499 None:intergenic
CAACTGAGAAGGAACAAGCA+CGG 0.692148 4_1:-49328270 None:intergenic
AGATAACGGTCTGCATACTG+TGG 0.693246 4_1:-49328129 None:intergenic
CCAGGAAGTTCAGCACTGAG+TGG 0.694458 4_1:-49329643 None:intergenic
ATGGGATGGAGAGCTGATGG+TGG 0.712985 4_1:+49331227 Msa0552670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATGATATAAATGAAA+GGG - chr4_1:49331860-49331879 None:intergenic 10.0%
!! AAAATAATGATATAAATGAA+AGG - chr4_1:49331861-49331880 None:intergenic 10.0%
!! TTATATTCTACAAAATATTA+CGG - chr4_1:49332826-49332845 None:intergenic 10.0%
!!! TTTAATTTTTCAATGAAATA+TGG + chr4_1:49334134-49334153 Msa0552670:intron 10.0%
!!! ATATTTTCATAAGTTGTTTT+CGG - chr4_1:49329049-49329068 None:intergenic 15.0%
!!! CTTTTTTCATAGAAATATAT+GGG - chr4_1:49329157-49329176 None:intergenic 15.0%
!!! TCTTTTTTCATAGAAATATA+TGG - chr4_1:49329158-49329177 None:intergenic 15.0%
!! CTATGAAAAAAGATAAAATA+AGG + chr4_1:49329165-49329184 Msa0552670:intron 15.0%
!! TAAATATTATTAGTAGTAGT+TGG + chr4_1:49329737-49329756 Msa0552670:intron 15.0%
!! ACTAACATACAAAATTATAA+AGG + chr4_1:49330939-49330958 Msa0552670:intron 15.0%
!!! TACATGTTTATTTCATTTTT+AGG + chr4_1:49331157-49331176 Msa0552670:intron 15.0%
!! ATTTACAAAATTATGAATTC+AGG + chr4_1:49332489-49332508 Msa0552670:intron 15.0%
!!! TTAGTTCATAATTATTTTAC+AGG - chr4_1:49332886-49332905 None:intergenic 15.0%
!! TTATGAACTAAAATAGAAAA+TGG + chr4_1:49332895-49332914 Msa0552670:intron 15.0%
!! TTATAATTTAATTGTATGAG+AGG - chr4_1:49334065-49334084 None:intergenic 15.0%
!! TCATACAATTAAATTATAAG+TGG + chr4_1:49334066-49334085 Msa0552670:intron 15.0%
!! CATACAATTAAATTATAAGT+GGG + chr4_1:49334067-49334086 Msa0552670:intron 15.0%
!! ATACAATTAAATTATAAGTG+GGG + chr4_1:49334068-49334087 Msa0552670:intron 15.0%
!! ATTTAAATGTAATAATAGCA+TGG - chr4_1:49334347-49334366 None:intergenic 15.0%
!!! AACTAGTTTTTATCATTTCT+AGG - chr4_1:49328691-49328710 None:intergenic 20.0%
!!! AAATTTGTTTCTAATGTAGA+AGG + chr4_1:49328750-49328769 Msa0552670:intron 20.0%
!! TACAAAATTTAGGTACTATT+TGG + chr4_1:49328814-49328833 Msa0552670:intron 20.0%
!! AATAAGTTGTTTATCAAAAC+AGG - chr4_1:49328869-49328888 None:intergenic 20.0%
!! AATAAGGTGAAAATATCTTA+TGG + chr4_1:49329227-49329246 Msa0552670:intron 20.0%
!! TTTGAATTTGTGTTGTAAAA+TGG + chr4_1:49329394-49329413 Msa0552670:intron 20.0%
!!! AAGATGAAGATTTTAACTAT+AGG + chr4_1:49329521-49329540 Msa0552670:CDS 20.0%
!! TAGTCGTATATTAATACATT+TGG + chr4_1:49330282-49330301 Msa0552670:intron 20.0%
!! ATATTAATACATTTGGAAGT+AGG + chr4_1:49330289-49330308 Msa0552670:intron 20.0%
!! TATTAATACATTTGGAAGTA+GGG + chr4_1:49330290-49330309 Msa0552670:intron 20.0%
!! TTCATTAATAGCATCATAAA+AGG - chr4_1:49330319-49330338 None:intergenic 20.0%
!!! AAATGTTTTCTTAAAAGTAG+TGG - chr4_1:49330848-49330867 None:intergenic 20.0%
!!! CTACTTTTAAGAAAACATTT+TGG + chr4_1:49330848-49330867 Msa0552670:intron 20.0%
!! ACATTAAGACATATATTACA+AGG - chr4_1:49331039-49331058 None:intergenic 20.0%
!! GTAGATAAAAACAATACATT+TGG - chr4_1:49331732-49331751 None:intergenic 20.0%
!! ATTGACCAAAAAGAATTTAA+TGG - chr4_1:49331914-49331933 None:intergenic 20.0%
!! TATGATTGAGTATATTTAAG+TGG + chr4_1:49332206-49332225 Msa0552670:intron 20.0%
!! ATGATTGAGTATATTTAAGT+GGG + chr4_1:49332207-49332226 Msa0552670:intron 20.0%
!! TACAAAATAATAAATGAGTG+AGG - chr4_1:49332268-49332287 None:intergenic 20.0%
!!! TTTAAAACCTCTAATTTACT+TGG + chr4_1:49332688-49332707 Msa0552670:intron 20.0%
!! AATAAAGGAAAATAAAGTAG+CGG - chr4_1:49333226-49333245 None:intergenic 20.0%
!!! TTGGTAATAAATCTTGTAAA+TGG + chr4_1:49333391-49333410 Msa0552670:intron 20.0%
!! CGAAGAAAAGAAAAAATTTA+GGG + chr4_1:49333930-49333949 Msa0552670:intron 20.0%
! AATTCACTTATTTGACCTTA+TGG + chr4_1:49328488-49328507 Msa0552670:intron 25.0%
! TGTCATAAATTGTTTCCATA+AGG - chr4_1:49328506-49328525 None:intergenic 25.0%
!! TTATTTTCGTTAAGTTCTCT+AGG + chr4_1:49328547-49328566 Msa0552670:intron 25.0%
! TAATCAAGTGTTTATAGCAT+AGG - chr4_1:49328648-49328667 None:intergenic 25.0%
! ATTAAACTGTTTATCCATAC+AGG + chr4_1:49328664-49328683 Msa0552670:intron 25.0%
! TTAAACTGTTTATCCATACA+GGG + chr4_1:49328665-49328684 Msa0552670:intron 25.0%
!! ATAAAAACTAGTTTCTGTGT+TGG + chr4_1:49328698-49328717 Msa0552670:intron 25.0%
! TCTTATAAGTGCTTATGAAT+AGG + chr4_1:49328929-49328948 Msa0552670:intron 25.0%
!!! TAAGGTCAAACTGTTTTTAT+AGG + chr4_1:49329183-49329202 Msa0552670:intron 25.0%
!! CATGATTTGGAAAAGAAATA+GGG - chr4_1:49329345-49329364 None:intergenic 25.0%
!! ACATGATTTGGAAAAGAAAT+AGG - chr4_1:49329346-49329365 None:intergenic 25.0%
! AGCATTTCATAAACATGATT+TGG - chr4_1:49329358-49329377 None:intergenic 25.0%
! TTTGTGTTGTAAAATGGAAA+CGG + chr4_1:49329400-49329419 Msa0552670:intron 25.0%
! TTTAATTCAATCAGCTTCAA+AGG + chr4_1:49329544-49329563 Msa0552670:CDS 25.0%
! TTAATTCAATCAGCTTCAAA+GGG + chr4_1:49329545-49329564 Msa0552670:CDS 25.0%
! ATATTATTAGTAGTAGTTGG+AGG + chr4_1:49329740-49329759 Msa0552670:intron 25.0%
! TCACAAAATGTTAAATGTGT+AGG + chr4_1:49329971-49329990 Msa0552670:intron 25.0%
! AAATGTGTAGGTATACATAA+AGG + chr4_1:49329983-49330002 Msa0552670:intron 25.0%
! AAAGAGTTACATTCCTTAAA+TGG - chr4_1:49330213-49330232 None:intergenic 25.0%
!! AGTTCTAATCAAAGAAGATT+CGG - chr4_1:49330774-49330793 None:intergenic 25.0%
!!! GTTAGTAGAATTTTTTCTTC+AGG - chr4_1:49330925-49330944 None:intergenic 25.0%
!!! TATTTCATTTTTAGGCATAC+TGG + chr4_1:49331165-49331184 Msa0552670:intron 25.0%
! GTACACTAAAATGATATTCT+CGG - chr4_1:49331315-49331334 None:intergenic 25.0%
! AAAAAGAAAACTATCCAGAA+GGG - chr4_1:49331373-49331392 None:intergenic 25.0%
!!! AAGTTTTGTCACACTTTTTA+CGG + chr4_1:49331546-49331565 Msa0552670:intron 25.0%
! AAACAAACTAGAAAGAATAG+TGG - chr4_1:49331702-49331721 None:intergenic 25.0%
! GATAAAAACAATACATTTGG+TGG - chr4_1:49331729-49331748 None:intergenic 25.0%
! ACAAGATGTAAAACATTATG+GGG - chr4_1:49331771-49331790 None:intergenic 25.0%
! CACAAGATGTAAAACATTAT+GGG - chr4_1:49331772-49331791 None:intergenic 25.0%
! AGAAGTGAAAAAGGTTTAAA+AGG + chr4_1:49331801-49331820 Msa0552670:intron 25.0%
! GAAGTGAAAAAGGTTTAAAA+GGG + chr4_1:49331802-49331821 Msa0552670:intron 25.0%
!!! CTTGTACATTTTCTAAGAAA+GGG - chr4_1:49331831-49331850 None:intergenic 25.0%
!!! TAAGGAAAATGTTGTTTTGT+TGG + chr4_1:49332152-49332171 Msa0552670:intron 25.0%
! TGATTGAGTATATTTAAGTG+GGG + chr4_1:49332208-49332227 Msa0552670:intron 25.0%
! TGTTGAGAGTTAATATGAAA+AGG - chr4_1:49332296-49332315 None:intergenic 25.0%
! AAAATTATGAATTCAGGATG+AGG + chr4_1:49332495-49332514 Msa0552670:intron 25.0%
! ATTCTCTTGAGAACTAATAA+TGG + chr4_1:49332541-49332560 Msa0552670:CDS 25.0%
! GAGAATATATCAACAACATT+AGG - chr4_1:49332743-49332762 None:intergenic 25.0%
! GAACTAAAATAGAAAATGGA+TGG + chr4_1:49332899-49332918 Msa0552670:intron 25.0%
! AATAATACACGAGATTATGA+AGG + chr4_1:49333347-49333366 Msa0552670:intron 25.0%
!! AGAGTTTGTAGAACTTTTAT+TGG + chr4_1:49333372-49333391 Msa0552670:intron 25.0%
! GCGAAGAAAAGAAAAAATTT+AGG + chr4_1:49333929-49333948 Msa0552670:intron 25.0%
!! AATGAAATATGGAATTTTGC+AGG + chr4_1:49334145-49334164 Msa0552670:intron 25.0%
! TCTTATGCATTACTTGTAAT+TGG - chr4_1:49334541-49334560 None:intergenic 25.0%
!! TGAATGATGGATTTAGAAGA+AGG - chr4_1:49328161-49328180 None:intergenic 30.0%
TGAAGATACTCTTTCTGAAT+GGG + chr4_1:49328301-49328320 Msa0552670:CDS 30.0%
AAATGATTATGACCATGGTT+AGG - chr4_1:49328392-49328411 None:intergenic 30.0%
GAATGAAATGATTATGACCA+TGG - chr4_1:49328397-49328416 None:intergenic 30.0%
AATAAGCAGAAAAGAGCTTA+TGG - chr4_1:49328532-49328551 None:intergenic 30.0%
TAGGATAGCTTATACGAAAA+TGG + chr4_1:49328566-49328585 Msa0552670:intron 30.0%
TAGCTTATACGAAAATGGTA+CGG + chr4_1:49328571-49328590 Msa0552670:intron 30.0%
TAGAAATATATGGGTCTGTT+TGG - chr4_1:49329148-49329167 None:intergenic 30.0%
!!! ACTGTTTTTATAGGCTATCT+TGG + chr4_1:49329192-49329211 Msa0552670:intron 30.0%
CTTATGGATATGTCATAAGT+TGG + chr4_1:49329243-49329262 Msa0552670:intron 30.0%
! GAAATAGGGTTTGTTCAAAT+TGG - chr4_1:49329331-49329350 None:intergenic 30.0%
GTTAAAATCTTCATCTTCTG+CGG - chr4_1:49329518-49329537 None:intergenic 30.0%
ATATATGTTACCTCAAACAG+AGG + chr4_1:49330050-49330069 Msa0552670:CDS 30.0%
GAATGCATGATGTATATGAA+TGG + chr4_1:49330173-49330192 Msa0552670:intron 30.0%
ACATTCCTTAAATGGCATTA+TGG - chr4_1:49330205-49330224 None:intergenic 30.0%
!! GAATGTAACTCTTTCAAGTT+AGG + chr4_1:49330219-49330238 Msa0552670:intron 30.0%
ATTGCTACTCTTGAGTATAT+TGG - chr4_1:49330257-49330276 None:intergenic 30.0%
!! TTGCTTGGTAGTTTTACTTT+TGG + chr4_1:49330641-49330660 Msa0552670:intron 30.0%
! TTCTTTGTTTGATTTCATCC+AGG + chr4_1:49330875-49330894 Msa0552670:intron 30.0%
!!! AGTAGAATTTTTTCTTCAGG+AGG - chr4_1:49330922-49330941 None:intergenic 30.0%
CACATTGAAGAAGAAAGTAA+AGG - chr4_1:49330996-49331015 None:intergenic 30.0%
GTCTTAATGTCTCAAATAGT+TGG + chr4_1:49331049-49331068 Msa0552670:intron 30.0%
TTCTGCACTAATAGTAATAG+TGG + chr4_1:49331129-49331148 Msa0552670:intron 30.0%
GAAAAAGAAAACTATCCAGA+AGG - chr4_1:49331374-49331393 None:intergenic 30.0%
!! AGACTTTGAAATGAGTGAAA+AGG - chr4_1:49331410-49331429 None:intergenic 30.0%
!! AGACTTTGAAATGAGTGAAA+AGG - chr4_1:49331410-49331429 None:intergenic 30.0%
!! AGTTTTGTCACACTTTTTAC+GGG + chr4_1:49331547-49331566 Msa0552670:intron 30.0%
CCACAAGATGTAAAACATTA+TGG - chr4_1:49331773-49331792 None:intergenic 30.0%
! CCATAATGTTTTACATCTTG+TGG + chr4_1:49331770-49331789 Msa0552670:intron 30.0%
! TTTTACATCTTGTGGAAGTA+GGG + chr4_1:49331778-49331797 Msa0552670:intron 30.0%
!! GCTTGTACATTTTCTAAGAA+AGG - chr4_1:49331832-49331851 None:intergenic 30.0%
TGATATAAATGAAAGGGATC+TGG - chr4_1:49331854-49331873 None:intergenic 30.0%
! CGGATCCATTAAATTCTTTT+TGG + chr4_1:49331906-49331925 Msa0552670:intron 30.0%
AACTTTGATACACTTGTTTC+TGG + chr4_1:49331941-49331960 Msa0552670:intron 30.0%
!! AAAATTGAGGAAGTATTCAG+CGG - chr4_1:49331967-49331986 None:intergenic 30.0%
!! TGCATAATTTTGAGAACAGA+AGG + chr4_1:49332004-49332023 Msa0552670:intron 30.0%
ACAGATAACTGAAGAATTTG+AGG + chr4_1:49332039-49332058 Msa0552670:intron 30.0%
! TTCAGAGAGTTGCTTTATTA+AGG + chr4_1:49332134-49332153 Msa0552670:intron 30.0%
GATTGAGTATATTTAAGTGG+GGG + chr4_1:49332209-49332228 Msa0552670:intron 30.0%
TGAGAGTTAATATGAAAAGG+AGG - chr4_1:49332293-49332312 None:intergenic 30.0%
AAGGAATAATACAAAACCGA+TGG - chr4_1:49332779-49332798 None:intergenic 30.0%
GTTGTGTATTTGTGTAAAAC+TGG + chr4_1:49332849-49332868 Msa0552670:intron 30.0%
ATAATCCCTATCTCAGTAAA+GGG - chr4_1:49332973-49332992 None:intergenic 30.0%
AATAATCCCTATCTCAGTAA+AGG - chr4_1:49332974-49332993 None:intergenic 30.0%
GAAAATAAAGTAGCGGTATT+GGG - chr4_1:49333219-49333238 None:intergenic 30.0%
TACTTTATCCGCTATATTGT+TGG + chr4_1:49333300-49333319 Msa0552670:intron 30.0%
AATCTCGTGTATTATTTGTG+TGG - chr4_1:49333343-49333362 None:intergenic 30.0%
!! TAAATGGTTTTACTTGCTTC+AGG + chr4_1:49333407-49333426 Msa0552670:intron 30.0%
!!! TGGCATTCTTATTTTCAGTA+TGG - chr4_1:49333851-49333870 None:intergenic 30.0%
ATACTGAAAATAAGAATGCC+AGG + chr4_1:49333850-49333869 Msa0552670:intron 30.0%
CCATGTAAATCAGAAAAATG+AGG - chr4_1:49333885-49333904 None:intergenic 30.0%
!! CCTCATTTTTCTGATTTACA+TGG + chr4_1:49333882-49333901 Msa0552670:intron 30.0%
AGAAAGAAAGAGAAGAAACA+AGG + chr4_1:49333907-49333926 Msa0552670:intron 30.0%
! TTAGTATTGAAGAGAGCTAT+TGG + chr4_1:49334216-49334235 Msa0552670:three_prime_UTR 30.0%
! ATGTTTACAATATGCCCTTT+TGG - chr4_1:49334500-49334519 None:intergenic 30.0%
TACTTAGGTGAGTTATTTAC+AGG - chr4_1:49334571-49334590 None:intergenic 30.0%
!!! AAGCAAGTGTTTTGATACAT+TGG - chr4_1:49334599-49334618 None:intergenic 30.0%
ATCCCAAATAACTAACGTCT+TGG - chr4_1:49328010-49328029 None:intergenic 35.0%
! GACGTTAGTTATTTGGGATA+AGG + chr4_1:49328011-49328030 Msa0552670:five_prime_UTR 35.0%
GAAGAAGGTAGTTGAGATAA+CGG - chr4_1:49328146-49328165 None:intergenic 35.0%
CTGAAGATACTCTTTCTGAA+TGG + chr4_1:49328300-49328319 Msa0552670:CDS 35.0%
GTTTATCTACCTATTGATCC+TGG + chr4_1:49328329-49328348 Msa0552670:CDS 35.0%
ATATCAAGAAGAACAACACC+AGG - chr4_1:49328350-49328369 None:intergenic 35.0%
AAACACTTGTGAGACTGTTT+GGG - chr4_1:49329095-49329114 None:intergenic 35.0%
TAAACACTTGTGAGACTGTT+TGG - chr4_1:49329096-49329115 None:intergenic 35.0%
TTGGAGAGCTTATGGAAATA+AGG + chr4_1:49329211-49329230 Msa0552670:intron 35.0%
TCCATCTTTAGTCTCCAAAA+GGG - chr4_1:49329464-49329483 None:intergenic 35.0%
TAAAGATGGAGGAAGAACTT+GGG + chr4_1:49329474-49329493 Msa0552670:CDS 35.0%
AGCATATATACCATATCACC+AGG - chr4_1:49329664-49329683 None:intergenic 35.0%
GTAGTAGTAGAAACAAGCAT+TGG - chr4_1:49329697-49329716 None:intergenic 35.0%
CAACTGTACAAATTAGCTGT+TGG + chr4_1:49329899-49329918 Msa0552670:intron 35.0%
AAACAGAGGATACAATTGGA+AGG + chr4_1:49330064-49330083 Msa0552670:CDS 35.0%
CAGTTACATCAAACGAAGTT+TGG - chr4_1:49330148-49330167 None:intergenic 35.0%
GCATGATGTATATGAATGGA+TGG + chr4_1:49330177-49330196 Msa0552670:intron 35.0%
! TGGATCCATAATGCCATTTA+AGG + chr4_1:49330197-49330216 Msa0552670:intron 35.0%
TAATACATTTGGAAGTAGGG+TGG + chr4_1:49330293-49330312 Msa0552670:intron 35.0%
!! ACAGTTTCTAGTGGTATTAG+TGG + chr4_1:49330467-49330486 Msa0552670:CDS 35.0%
! TGCTTTTGCTTCTATTTGCT+TGG + chr4_1:49330626-49330645 Msa0552670:intron 35.0%
TGTACAATTAGATAGACCAC+AGG - chr4_1:49330671-49330690 None:intergenic 35.0%
TGTGGTCTATCTAATTGTAC+AGG + chr4_1:49330670-49330689 Msa0552670:intron 35.0%
TGGATGTACAAGAAGATTCT+TGG - chr4_1:49330828-49330847 None:intergenic 35.0%
ATCCAGGTGATATCATTGAT+AGG + chr4_1:49330891-49330910 Msa0552670:intron 35.0%
ATCCTATCAATGATATCACC+TGG - chr4_1:49330896-49330915 None:intergenic 35.0%
! ATGTCTCAAATAGTTGGCTT+TGG + chr4_1:49331055-49331074 Msa0552670:intron 35.0%
AAATGACATCTGTGGCTAAA+TGG - chr4_1:49331096-49331115 None:intergenic 35.0%
!! TTTAGCCACAGATGTCATTT+TGG + chr4_1:49331096-49331115 Msa0552670:intron 35.0%
CACTCATTTCAAAGTCTTTC+TGG + chr4_1:49331413-49331432 Msa0552670:intron 35.0%
CACTCATTTCAAAGTCTTTC+TGG + chr4_1:49331413-49331432 Msa0552670:intron 35.0%
!! GTTTTGTCACACTTTTTACG+GGG + chr4_1:49331548-49331567 Msa0552670:intron 35.0%
TTTACTCCCCTTATCTTGTT+TGG + chr4_1:49331611-49331630 Msa0552670:intron 35.0%
CTATTGCCAAACAAGATAAG+GGG - chr4_1:49331620-49331639 None:intergenic 35.0%
CCTATTGCCAAACAAGATAA+GGG - chr4_1:49331621-49331640 None:intergenic 35.0%
ACCTATTGCCAAACAAGATA+AGG - chr4_1:49331622-49331641 None:intergenic 35.0%
! GTTTTACATCTTGTGGAAGT+AGG + chr4_1:49331777-49331796 Msa0552670:intron 35.0%
TCAAATTGAAAGAACTGCAG+AGG - chr4_1:49332412-49332431 None:intergenic 35.0%
CTCTTGAGAACTAATAATGG+TGG + chr4_1:49332544-49332563 Msa0552670:CDS 35.0%
TAATAATGGTGGCAAGTCAT+GGG + chr4_1:49332555-49332574 Msa0552670:CDS 35.0%
AGCTCTACCAAGTAAATTAG+AGG - chr4_1:49332698-49332717 None:intergenic 35.0%
!!! ATTAGGAACCTGGTTTTGTT+GGG - chr4_1:49332726-49332745 None:intergenic 35.0%
TATCAACAACATTAGGAACC+TGG - chr4_1:49332736-49332755 None:intergenic 35.0%
CTCCACTTATATTGTTCCAT+CGG + chr4_1:49332760-49332779 Msa0552670:intron 35.0%
AACCGATGGAACAATATAAG+TGG - chr4_1:49332765-49332784 None:intergenic 35.0%
!! TTTTAGCCTCTTTGGAGAAT+AGG - chr4_1:49332803-49332822 None:intergenic 35.0%
!! TATTACGGTTTTAGCCTCTT+TGG - chr4_1:49332811-49332830 None:intergenic 35.0%
GTGTATTTGTGTAAAACTGG+AGG + chr4_1:49332852-49332871 Msa0552670:intron 35.0%
TCTCCTTGGAGAAATGAAAA+TGG + chr4_1:49332928-49332947 Msa0552670:intron 35.0%
! TGACCATTTTCATTTCTCCA+AGG - chr4_1:49332934-49332953 None:intergenic 35.0%
TAATCCCTATCTCAGTAAAG+GGG - chr4_1:49332972-49332991 None:intergenic 35.0%
TGACCAAAATTTCCACTTCA+CGG + chr4_1:49333001-49333020 Msa0552670:intron 35.0%
! TTTAGAGGAGTGTAACAGAA+TGG - chr4_1:49333041-49333060 None:intergenic 35.0%
TGAGGAAATCATTGACAAAG+AGG - chr4_1:49333069-49333088 None:intergenic 35.0%
GATGTGGAAGAAAGAGAAAA+AGG - chr4_1:49333144-49333163 None:intergenic 35.0%
TCAACGGAAAAAGTGACAAA+TGG - chr4_1:49333172-49333191 None:intergenic 35.0%
GGAAAATAAAGTAGCGGTAT+TGG - chr4_1:49333220-49333239 None:intergenic 35.0%
! AGGTTCATTGATGACAAGAA+GGG + chr4_1:49333427-49333446 Msa0552670:intron 35.0%
TGACAAGAAGGGATTTGTAT+TGG + chr4_1:49333438-49333457 Msa0552670:CDS 35.0%
GACAAGAAGGGATTTGTATT+GGG + chr4_1:49333439-49333458 Msa0552670:CDS 35.0%
GGATTTGTATTGGGAAATGA+TGG + chr4_1:49333448-49333467 Msa0552670:CDS 35.0%
! GCTAAATAAAGCTCTAACCA+AGG - chr4_1:49333489-49333508 None:intergenic 35.0%
!! GGTTAGAGCTTTATTTAGCA+TGG + chr4_1:49333490-49333509 Msa0552670:exon 35.0%
AACTTATGTCAGCTAGAAAC+AGG - chr4_1:49333529-49333548 None:intergenic 35.0%
AAAATGAGGAGTTTCATTCC+TGG - chr4_1:49333871-49333890 None:intergenic 35.0%
! TTCCCTGGGAACATTAATTT+TGG + chr4_1:49333988-49334007 Msa0552670:intron 35.0%
! TCCCTGGGAACATTAATTTT+GGG + chr4_1:49333989-49334008 Msa0552670:intron 35.0%
ATAGATCCAAGTTAGAACAC+TGG + chr4_1:49334091-49334110 Msa0552670:intron 35.0%
CTTAAACCAGTGTTCTAACT+TGG - chr4_1:49334100-49334119 None:intergenic 35.0%
!! CAAGTTAGAACACTGGTTTA+AGG + chr4_1:49334098-49334117 Msa0552670:intron 35.0%
! CTGGTTTAAGGTGATCTTTA+AGG + chr4_1:49334110-49334129 Msa0552670:intron 35.0%
! ACTCGATTGCAATTTTGTAG+CGG + chr4_1:49334175-49334194 Msa0552670:three_prime_UTR 35.0%
!! CATTTTTCAGCATGACATCA+AGG - chr4_1:49334254-49334273 None:intergenic 35.0%
ATGTCATGCTGAAAAATGTG+AGG + chr4_1:49334256-49334275 Msa0552670:three_prime_UTR 35.0%
! GATACATTGGTGAAGTACTT+AGG - chr4_1:49334586-49334605 None:intergenic 35.0%
CAAATAACTAACGTCTTGGC+GGG - chr4_1:49328006-49328025 None:intergenic 40.0%
CCAAATAACTAACGTCTTGG+CGG - chr4_1:49328007-49328026 None:intergenic 40.0%
CGCCAAGACGTTAGTTATTT+GGG + chr4_1:49328005-49328024 Msa0552670:five_prime_UTR 40.0%
TGTTCCTTCTTTCGTTCCAA+TGG + chr4_1:49328073-49328092 Msa0552670:exon 40.0%
!! AATGAACTGTCTTCTGGTTC+TGG - chr4_1:49328231-49328250 None:intergenic 40.0%
TTCTGCAATGAACTGTCTTC+TGG - chr4_1:49328237-49328256 None:intergenic 40.0%
AGAACAACACCAGGATCAAT+AGG - chr4_1:49328341-49328360 None:intergenic 40.0%
! TTTTGCCTACATTGTGTGAC+TGG + chr4_1:49328465-49328484 Msa0552670:intron 40.0%
GAATTCCAGTCACACAATGT+AGG - chr4_1:49328473-49328492 None:intergenic 40.0%
! TATCATTTCTAGGCCCTGTA+TGG - chr4_1:49328681-49328700 None:intergenic 40.0%
! AAATGGAAACGGATTTGTCG+TGG + chr4_1:49329411-49329430 Msa0552670:intron 40.0%
!! ACCCTTTTGGAGACTAAAGA+TGG + chr4_1:49329460-49329479 Msa0552670:CDS 40.0%
CTCCATCTTTAGTCTCCAAA+AGG - chr4_1:49329465-49329484 None:intergenic 40.0%
!! CTTTTGGAGACTAAAGATGG+AGG + chr4_1:49329463-49329482 Msa0552670:CDS 40.0%
CTAAAGATGGAGGAAGAACT+TGG + chr4_1:49329473-49329492 Msa0552670:CDS 40.0%
AAATCTTCATCTTCTGCGGA+TGG - chr4_1:49329514-49329533 None:intergenic 40.0%
ATCAGCTTCAAAGGGAAAGA+AGG + chr4_1:49329553-49329572 Msa0552670:CDS 40.0%
! ACATAGCTTTTGCGTTGAGT+TGG + chr4_1:49329803-49329822 Msa0552670:intron 40.0%
CCAATTGTATCCTCTGTTTG+AGG - chr4_1:49330063-49330082 None:intergenic 40.0%
CCTCAAACAGAGGATACAAT+TGG + chr4_1:49330060-49330079 Msa0552670:CDS 40.0%
ATAGCACGTCGAAAGAGATT+AGG - chr4_1:49330369-49330388 None:intergenic 40.0%
!! CACTAGAAACTGTTCTGAAG+AGG - chr4_1:49330460-49330479 None:intergenic 40.0%
! CTCTTCAGAACAGTTTCTAG+TGG + chr4_1:49330458-49330477 Msa0552670:intron 40.0%
! GTGAGGCTTTTACTTTGTGA+TGG + chr4_1:49330599-49330618 Msa0552670:intron 40.0%
!! TTTTACTTTTGGCATGCCTG+TGG + chr4_1:49330652-49330671 Msa0552670:intron 40.0%
CAGTGCAAAAAGCAAAAGAG+AGG - chr4_1:49330967-49330986 None:intergenic 40.0%
AGGATGAGCTAAACACATCA+TGG - chr4_1:49331019-49331038 None:intergenic 40.0%
ACCAACCAAAATGACATCTG+TGG - chr4_1:49331104-49331123 None:intergenic 40.0%
! GGTAGTCTTTTTCTCAGCAA+AGG + chr4_1:49331272-49331291 Msa0552670:CDS 40.0%
!! TTTTTCTCAGCAAAGGCACA+GGG + chr4_1:49331279-49331298 Msa0552670:CDS 40.0%
GTGTACCCATATGATACTAG+TGG + chr4_1:49331329-49331348 Msa0552670:intron 40.0%
GAGGACCACTAGTATCATAT+GGG - chr4_1:49331337-49331356 None:intergenic 40.0%
! CCCTTATCTTGTTTGGCAAT+AGG + chr4_1:49331618-49331637 Msa0552670:intron 40.0%
GAAGTAGGGAGAAGTGAAAA+AGG + chr4_1:49331792-49331811 Msa0552670:intron 40.0%
AGGAAATTCCTGTTCAAAGC+CGG + chr4_1:49332059-49332078 Msa0552670:CDS 40.0%
TGATGTCGGATATCGTTCAA+CGG + chr4_1:49332096-49332115 Msa0552670:CDS 40.0%
TGAGTATATTTAAGTGGGGG+TGG + chr4_1:49332212-49332231 Msa0552670:intron 40.0%
GAGTATATTTAAGTGGGGGT+GGG + chr4_1:49332213-49332232 Msa0552670:intron 40.0%
TATGAATTCAGGATGAGGCT+TGG + chr4_1:49332500-49332519 Msa0552670:intron 40.0%
ATGAATTCAGGATGAGGCTT+GGG + chr4_1:49332501-49332520 Msa0552670:intron 40.0%
CTAATAATGGTGGCAAGTCA+TGG + chr4_1:49332554-49332573 Msa0552670:CDS 40.0%
!!! CATTAGGAACCTGGTTTTGT+TGG - chr4_1:49332727-49332746 None:intergenic 40.0%
TCCTTTCCTATTCTCCAAAG+AGG + chr4_1:49332794-49332813 Msa0552670:intron 40.0%
ATGGATGGAGATAATCTCCT+TGG + chr4_1:49332914-49332933 Msa0552670:intron 40.0%
!! TAAAGGGGGTACTCTTACTA+AGG - chr4_1:49332957-49332976 None:intergenic 40.0%
AATCCCTATCTCAGTAAAGG+GGG - chr4_1:49332971-49332990 None:intergenic 40.0%
!! GAAGTGGAAATTTTGGTCAC+TGG - chr4_1:49333000-49333019 None:intergenic 40.0%
! GATCCGTGAAGTGGAAATTT+TGG - chr4_1:49333007-49333026 None:intergenic 40.0%
! AGGAGTGTAACAGAATGGAA+GGG - chr4_1:49333036-49333055 None:intergenic 40.0%
!! GACAAAGAGGAGGTATTTAG+AGG - chr4_1:49333056-49333075 None:intergenic 40.0%
GGAAATCATTGACAAAGAGG+AGG - chr4_1:49333066-49333085 None:intergenic 40.0%
AAAGAGAAAAAGGAGCAGGA+AGG - chr4_1:49333134-49333153 None:intergenic 40.0%
GAAGAAAGAGAAAAAGGAGC+AGG - chr4_1:49333138-49333157 None:intergenic 40.0%
TATGGTGCATGTTTACAGGA+GGG - chr4_1:49333251-49333270 None:intergenic 40.0%
TTCCGATAATTGCATCCGAT+AGG - chr4_1:49333276-49333295 None:intergenic 40.0%
ATCCTGTGCCAACAATATAG+CGG - chr4_1:49333311-49333330 None:intergenic 40.0%
! CAGGTTCATTGATGACAAGA+AGG + chr4_1:49333426-49333445 Msa0552670:intron 40.0%
CCCCAAAATTAATGTTCCCA+GGG - chr4_1:49333993-49334012 None:intergenic 40.0%
! CCCTGGGAACATTAATTTTG+GGG + chr4_1:49333990-49334009 Msa0552670:intron 40.0%
! CCTGGGAACATTAATTTTGG+GGG + chr4_1:49333991-49334010 Msa0552670:intron 40.0%
!!! ATGCAAGCATGGTTTTGACA+AGG + chr4_1:49334021-49334040 Msa0552670:intron 40.0%
TGACAAGGACATATAGAGTC+AGG + chr4_1:49334036-49334055 Msa0552670:intron 40.0%
GCTCTCTTCAATACTAAGCA+TGG - chr4_1:49334213-49334232 None:intergenic 40.0%
CTGAAAAATGTGAGGAGATG+TGG + chr4_1:49334264-49334283 Msa0552670:three_prime_UTR 40.0%
CTAGGCTTCTACATTACAAC+AGG - chr4_1:49334383-49334402 None:intergenic 40.0%
AGATCAGATGCACCATCTAT+AGG + chr4_1:49334427-49334446 Msa0552670:intron 40.0%
ATGAATCGAAGACGCCAAAA+GGG + chr4_1:49334483-49334502 Msa0552670:intron 40.0%
CCGCCAAGACGTTAGTTATT+TGG + chr4_1:49328004-49328023 Msa0552670:five_prime_UTR 45.0%
AGTGTGTGTGTGTGTGTGTA+TGG - chr4_1:49328052-49328071 None:intergenic 45.0%
! AGATAACGGTCTGCATACTG+TGG - chr4_1:49328132-49328151 None:intergenic 45.0%
AGGTCTGGGAGAATGAATGA+TGG - chr4_1:49328174-49328193 None:intergenic 45.0%
!! AACTGTCTTCTGGTTCTGGA+AGG - chr4_1:49328227-49328246 None:intergenic 45.0%
AACAAGCACGGATATAGCAG+TGG - chr4_1:49328261-49328280 None:intergenic 45.0%
CAACTGAGAAGGAACAAGCA+CGG - chr4_1:49328273-49328292 None:intergenic 45.0%
TCAGACTTTGCCAACTGAGA+AGG - chr4_1:49328284-49328303 None:intergenic 45.0%
GTTCCTGAAGATCCTAACCA+TGG + chr4_1:49328377-49328396 Msa0552670:CDS 45.0%
TGACCATGGTTAGGATCTTC+AGG - chr4_1:49328383-49328402 None:intergenic 45.0%
AGGCTATCTTGGAGAGCTTA+TGG + chr4_1:49329203-49329222 Msa0552670:intron 45.0%
! TGTCGTGGTAGGTTTTCTTC+TGG + chr4_1:49329426-49329445 Msa0552670:intron 45.0%
! GTCGTGGTAGGTTTTCTTCT+GGG + chr4_1:49329427-49329446 Msa0552670:intron 45.0%
!! TAGGTTTTCTTCTGGGAACG+AGG + chr4_1:49329434-49329453 Msa0552670:intron 45.0%
GCTTCAAAGGGAAAGAAGGA+TGG + chr4_1:49329557-49329576 Msa0552670:CDS 45.0%
!! AGGGAAAGAAGGATGGATTG+TGG + chr4_1:49329564-49329583 Msa0552670:CDS 45.0%
!! GGGAAAGAAGGATGGATTGT+GGG + chr4_1:49329565-49329584 Msa0552670:CDS 45.0%
GGAGTGTACAACAGAATTGC+AGG - chr4_1:49329595-49329614 None:intergenic 45.0%
TGCTGAACTTCCTGGTGATA+TGG + chr4_1:49329651-49329670 Msa0552670:CDS 45.0%
AGTAGTAGTTGGAGGAGTAG+TGG + chr4_1:49329748-49329767 Msa0552670:intron 45.0%
GGCAACTAATGACAAGAGTG+CGG + chr4_1:49330004-49330023 Msa0552670:CDS 45.0%
! TAATGACAAGAGTGCGGAGA+TGG + chr4_1:49330010-49330029 Msa0552670:CDS 45.0%
AGTGGTGCAAGCTATTACAC+TGG + chr4_1:49330485-49330504 Msa0552670:CDS 45.0%
ACTGCAACATACCTTCCATC+GGG - chr4_1:49330536-49330555 None:intergenic 45.0%
GACTGCAACATACCTTCCAT+CGG - chr4_1:49330537-49330556 None:intergenic 45.0%
AGGTCATGTAGAAGTTGCCA+CGG - chr4_1:49330565-49330584 None:intergenic 45.0%
TGGCAACTTCTACATGACCT+GGG + chr4_1:49330565-49330584 Msa0552670:CDS 45.0%
!!! GCCACAGATGTCATTTTGGT+TGG + chr4_1:49331100-49331119 Msa0552670:intron 45.0%
TGCCAGAAGAATCCAGAACA+TGG + chr4_1:49331208-49331227 Msa0552670:CDS 45.0%
GCCAGAAGAATCCAGAACAT+GGG + chr4_1:49331209-49331228 Msa0552670:CDS 45.0%
! TCCCATGTTCTGGATTCTTC+TGG - chr4_1:49331213-49331232 None:intergenic 45.0%
GAAGAATCCAGAACATGGGA+TGG + chr4_1:49331213-49331232 Msa0552670:CDS 45.0%
!! CTTTTTCTCAGCAAAGGCAC+AGG + chr4_1:49331278-49331297 Msa0552670:CDS 45.0%
!! TTTTCTCAGCAAAGGCACAG+GGG + chr4_1:49331280-49331299 Msa0552670:CDS 45.0%
GGAGGACCACTAGTATCATA+TGG - chr4_1:49331338-49331357 None:intergenic 45.0%
GAAGGGAATGAGTGAAAAGG+AGG - chr4_1:49331356-49331375 None:intergenic 45.0%
CCAGAAGGGAATGAGTGAAA+AGG - chr4_1:49331359-49331378 None:intergenic 45.0%
! CCTTTTCACTCATTCCCTTC+TGG + chr4_1:49331356-49331375 Msa0552670:intron 45.0%
!! AAAGAATAGTGGACAGCACG+AGG - chr4_1:49331691-49331710 None:intergenic 45.0%
GGAAATTCCTGTTCAAAGCC+GGG + chr4_1:49332060-49332079 Msa0552670:CDS 45.0%
GAAATTCCTGTTCAAAGCCG+GGG + chr4_1:49332061-49332080 Msa0552670:CDS 45.0%
AAATTCCTGTTCAAAGCCGG+GGG + chr4_1:49332062-49332081 Msa0552670:CDS 45.0%
GGGTTTGGCATTCTTGATGT+CGG + chr4_1:49332082-49332101 Msa0552670:CDS 45.0%
! TGTTGTCAGCAGCTTTGTCA+CGG - chr4_1:49332582-49332601 None:intergenic 45.0%
! GCCTCTTTGGAGAATAGGAA+AGG - chr4_1:49332798-49332817 None:intergenic 45.0%
AGTACCCCCTTTACTGAGAT+AGG + chr4_1:49332964-49332983 Msa0552670:intron 45.0%
GTACCCCCTTTACTGAGATA+GGG + chr4_1:49332965-49332984 Msa0552670:intron 45.0%
GGAGTGTAACAGAATGGAAG+GGG - chr4_1:49333035-49333054 None:intergenic 45.0%
! GAGGAGTGTAACAGAATGGA+AGG - chr4_1:49333037-49333056 None:intergenic 45.0%
GTTAGAATTGGAGGAAGGTG+AGG - chr4_1:49333087-49333106 None:intergenic 45.0%
AGCAGGTTAGAATTGGAGGA+AGG - chr4_1:49333092-49333111 None:intergenic 45.0%
AGCTAGCAGGTTAGAATTGG+AGG - chr4_1:49333096-49333115 None:intergenic 45.0%
GACAGCTAGCAGGTTAGAAT+TGG - chr4_1:49333099-49333118 None:intergenic 45.0%
TAACAACATGGACAGCTAGC+AGG - chr4_1:49333109-49333128 None:intergenic 45.0%
AGCAGGAAGGAGTAACAACA+TGG - chr4_1:49333121-49333140 None:intergenic 45.0%
! GGTATTGGGTCTAAAGAGCA+AGG - chr4_1:49333205-49333224 None:intergenic 45.0%
GTTTACAGGAGGGGGAATAA+AGG - chr4_1:49333241-49333260 None:intergenic 45.0%
ATGGTGCATGTTTACAGGAG+GGG - chr4_1:49333250-49333269 None:intergenic 45.0%
CTATGGTGCATGTTTACAGG+AGG - chr4_1:49333252-49333271 None:intergenic 45.0%
CTCCTGTAAACATGCACCAT+AGG + chr4_1:49333250-49333269 Msa0552670:intron 45.0%
AACATGCACCATAGGCCTAT+CGG + chr4_1:49333258-49333277 Msa0552670:intron 45.0%
AATTGCATCCGATAGGCCTA+TGG - chr4_1:49333269-49333288 None:intergenic 45.0%
GGCCTATCGGATGCAATTAT+CGG + chr4_1:49333271-49333290 Msa0552670:intron 45.0%
ATCCGCTATATTGTTGGCAC+AGG + chr4_1:49333306-49333325 Msa0552670:intron 45.0%
GATGCAGCTGAAACTACTTG+TGG - chr4_1:49333563-49333582 None:intergenic 45.0%
! TCATATGTGCTGATCTTCCC+TGG + chr4_1:49333973-49333992 Msa0552670:intron 45.0%
! CATATGTGCTGATCTTCCCT+GGG + chr4_1:49333974-49333993 Msa0552670:intron 45.0%
CCCCCAAAATTAATGTTCCC+AGG - chr4_1:49333994-49334013 None:intergenic 45.0%
AGTCGTTGAAGCTATGCACT+AGG - chr4_1:49334401-49334420 None:intergenic 45.0%
TGGGATAACTCGCCTATAGA+TGG - chr4_1:49334442-49334461 None:intergenic 45.0%
ACCACTTACAAGTGATGCGT+GGG - chr4_1:49334461-49334480 None:intergenic 45.0%
CATGAATCGAAGACGCCAAA+AGG + chr4_1:49334482-49334501 Msa0552670:intron 45.0%
!!! AATTAAATTTTACAAAATTT+AGG + chr4_1:49328804-49328823 Msa0552670:intron 5.0%
!! ATATATAATAAATATTGAAA+CGG + chr4_1:49331886-49331905 Msa0552670:intron 5.0%
GTCGCCATTGGAACGAAAGA+AGG - chr4_1:49328080-49328099 None:intergenic 50.0%
GCTTTAACCACGAAGCTTCG+AGG - chr4_1:49328194-49328213 None:intergenic 50.0%
CGTGCTTGTTCCTTCTCAGT+TGG + chr4_1:49328271-49328290 Msa0552670:CDS 50.0%
! GGAAACGGATTTGTCGTGGT+AGG + chr4_1:49329415-49329434 Msa0552670:intron 50.0%
TCTGCGGATGGTATAGAACG+TGG - chr4_1:49329502-49329521 None:intergenic 50.0%
CTGTTGTACACTCCTGATGC+TGG + chr4_1:49329601-49329620 Msa0552670:CDS 50.0%
TCCTGATGCTGGAGAGAGTT+GGG + chr4_1:49329612-49329631 Msa0552670:CDS 50.0%
ATGCTGGAGAGAGTTGGGAA+AGG + chr4_1:49329617-49329636 Msa0552670:CDS 50.0%
GTAGTTGGAGGAGTAGTGGT+AGG + chr4_1:49329752-49329771 Msa0552670:intron 50.0%
CAATTGGAAGGCTGCTGTTC+AGG + chr4_1:49330076-49330095 Msa0552670:CDS 50.0%
GAAGGCTGCTGTTCAGGAAT+CGG + chr4_1:49330082-49330101 Msa0552670:CDS 50.0%
TGCTGTTCAGGAATCGGTGT+CGG + chr4_1:49330088-49330107 Msa0552670:CDS 50.0%
!! CGGTGTCGGCTACTCTTAAT+AGG + chr4_1:49330102-49330121 Msa0552670:CDS 50.0%
ACTGTCAATCGATCTCCCGA+TGG + chr4_1:49330518-49330537 Msa0552670:CDS 50.0%
TCAATCGATCTCCCGATGGA+AGG + chr4_1:49330522-49330541 Msa0552670:CDS 50.0%
TATGTTGCAGTCTCAAGCCG+TGG + chr4_1:49330545-49330564 Msa0552670:CDS 50.0%
GTGGCAACTTCTACATGACC+TGG + chr4_1:49330564-49330583 Msa0552670:CDS 50.0%
AGTAAAAGCCTCACCTGACC+AGG - chr4_1:49330593-49330612 None:intergenic 50.0%
CTGGCAACTGCTCTGTTATG+TGG - chr4_1:49331194-49331213 None:intergenic 50.0%
AACATGGGATGGAGAGCTGA+TGG + chr4_1:49331224-49331243 Msa0552670:CDS 50.0%
CATCAAGAATGCCAAACCCC+CGG - chr4_1:49332081-49332100 None:intergenic 50.0%
GTGACAAATGGCTGCAGATG+TGG - chr4_1:49333160-49333179 None:intergenic 50.0%
GCAAGGCATGTGCGTATCAA+CGG - chr4_1:49333188-49333207 None:intergenic 50.0%
TGGTGCATGTTTACAGGAGG+GGG - chr4_1:49333249-49333268 None:intergenic 50.0%
GGCCTATGGTGCATGTTTAC+AGG - chr4_1:49333255-49333274 None:intergenic 50.0%
GGGGTCAACTAATGCAAGCA+TGG + chr4_1:49334010-49334029 Msa0552670:intron 50.0%
TCCCACGCATCACTTGTAAG+TGG + chr4_1:49334457-49334476 Msa0552670:intron 50.0%
CACCACTTACAAGTGATGCG+TGG - chr4_1:49334462-49334481 None:intergenic 50.0%
GTGAACTGCAGAGTCGCCAT+TGG - chr4_1:49328092-49328111 None:intergenic 55.0%
ACCACGAAGCTTCGAGGTCT+GGG - chr4_1:49328188-49328207 None:intergenic 55.0%
AACCACGAAGCTTCGAGGTC+TGG - chr4_1:49328189-49328208 None:intergenic 55.0%
! GGGAACGAGGCAAACCCTTT+TGG + chr4_1:49329447-49329466 Msa0552670:CDS 55.0%
CTCCTGATGCTGGAGAGAGT+TGG + chr4_1:49329611-49329630 Msa0552670:CDS 55.0%
TCCCAACTCTCTCCAGCATC+AGG - chr4_1:49329616-49329635 None:intergenic 55.0%
! CCAGGAAGTTCAGCACTGAG+TGG - chr4_1:49329646-49329665 None:intergenic 55.0%
! CCACTCAGTGCTGAACTTCC+TGG + chr4_1:49329643-49329662 Msa0552670:CDS 55.0%
TTGGAGGAGTAGTGGTAGGC+TGG + chr4_1:49329756-49329775 Msa0552670:intron 55.0%
GCGGAGATGGTGACAGATGA+AGG + chr4_1:49330023-49330042 Msa0552670:CDS 55.0%
TTCTACATGACCTGGGAGCC+TGG + chr4_1:49330572-49330591 Msa0552670:CDS 55.0%
CAGCTCTCCATCCCATGTTC+TGG - chr4_1:49331223-49331242 None:intergenic 55.0%
ATGGGATGGAGAGCTGATGG+TGG + chr4_1:49331227-49331246 Msa0552670:CDS 55.0%
! GGTCTCTGGCTTCTTGTTCG+TGG + chr4_1:49331248-49331267 Msa0552670:CDS 55.0%
! CTCTGGCTTCTTGTTCGTGG+AGG + chr4_1:49331251-49331270 Msa0552670:CDS 55.0%
GCTCTCGTCCCAACAAAACC+AGG + chr4_1:49332715-49332734 Msa0552670:intron 55.0%
! GGGGTATCTGATCCGTGAAG+TGG - chr4_1:49333016-49333035 None:intergenic 55.0%
GGAGTCTTGCTTCGCTACCT+TGG + chr4_1:49333469-49333488 Msa0552670:CDS 55.0%
TCCCAGACCTCGAAGCTTCG+TGG + chr4_1:49328184-49328203 Msa0552670:CDS 60.0%
!! GGAGAGCTGATGGTGGTCTC+TGG + chr4_1:49331234-49331253 Msa0552670:CDS 60.0%
!! CCAAACCCCCGGCTTTGAAC+AGG - chr4_1:49332070-49332089 None:intergenic 60.0%
CCTGTTCAAAGCCGGGGGTT+TGG + chr4_1:49332067-49332086 Msa0552670:CDS 60.0%
CATGACCTGGGAGCCTGGTC+AGG + chr4_1:49330577-49330596 Msa0552670:CDS 65.0%
CAGGATGAGGCTTGGGCAGC+AGG + chr4_1:49332508-49332527 Msa0552670:intron 65.0%
GATGAGGCTTGGGCAGCAGG+TGG + chr4_1:49332511-49332530 Msa0552670:CDS 65.0%
CCTCACCTGACCAGGCTCCC+AGG - chr4_1:49330585-49330604 None:intergenic 70.0%
CCTGGGAGCCTGGTCAGGTG+AGG + chr4_1:49330582-49330601 Msa0552670:intron 70.0%
GCTTGGGCAGCAGGTGGCAG+TGG + chr4_1:49332517-49332536 Msa0552670:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 49327994 49334621 49327994 ID=Msa0552670;Name=Msa0552670
chr4_1 mRNA 49327994 49334621 49327994 ID=Msa0552670-mRNA-1;Parent=Msa0552670;Name=Msa0552670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=98|1|1|1|0.77|0.7|10|377|395
chr4_1 exon 49327994 49328398 49327994 ID=Msa0552670-mRNA-1:exon:13753;Parent=Msa0552670-mRNA-1
chr4_1 exon 49329437 49329672 49329437 ID=Msa0552670-mRNA-1:exon:13754;Parent=Msa0552670-mRNA-1
chr4_1 exon 49329993 49330123 49329993 ID=Msa0552670-mRNA-1:exon:13755;Parent=Msa0552670-mRNA-1
chr4_1 exon 49330466 49330598 49330466 ID=Msa0552670-mRNA-1:exon:13756;Parent=Msa0552670-mRNA-1
chr4_1 exon 49331179 49331301 49331179 ID=Msa0552670-mRNA-1:exon:13757;Parent=Msa0552670-mRNA-1
chr4_1 exon 49332043 49332117 49332043 ID=Msa0552670-mRNA-1:exon:13758;Parent=Msa0552670-mRNA-1
chr4_1 exon 49332511 49332626 49332511 ID=Msa0552670-mRNA-1:exon:13759;Parent=Msa0552670-mRNA-1
chr4_1 exon 49333429 49333511 49333429 ID=Msa0552670-mRNA-1:exon:13760;Parent=Msa0552670-mRNA-1
chr4_1 exon 49334167 49334421 49334167 ID=Msa0552670-mRNA-1:exon:13761;Parent=Msa0552670-mRNA-1
chr4_1 exon 49334516 49334621 49334516 ID=Msa0552670-mRNA-1:exon:13762;Parent=Msa0552670-mRNA-1
chr4_1 five_prime_UTR 49327994 49328091 49327994 ID=Msa0552670-mRNA-1:five_prime_utr;Parent=Msa0552670-mRNA-1
chr4_1 CDS 49328092 49328398 49328092 ID=Msa0552670-mRNA-1:cds;Parent=Msa0552670-mRNA-1
chr4_1 CDS 49329437 49329672 49329437 ID=Msa0552670-mRNA-1:cds;Parent=Msa0552670-mRNA-1
chr4_1 CDS 49329993 49330123 49329993 ID=Msa0552670-mRNA-1:cds;Parent=Msa0552670-mRNA-1
chr4_1 CDS 49330466 49330598 49330466 ID=Msa0552670-mRNA-1:cds;Parent=Msa0552670-mRNA-1
chr4_1 CDS 49331179 49331301 49331179 ID=Msa0552670-mRNA-1:cds;Parent=Msa0552670-mRNA-1
chr4_1 CDS 49332043 49332117 49332043 ID=Msa0552670-mRNA-1:cds;Parent=Msa0552670-mRNA-1
chr4_1 CDS 49332511 49332626 49332511 ID=Msa0552670-mRNA-1:cds;Parent=Msa0552670-mRNA-1
chr4_1 CDS 49333429 49333495 49333429 ID=Msa0552670-mRNA-1:cds;Parent=Msa0552670-mRNA-1
chr4_1 three_prime_UTR 49333496 49333511 49333496 ID=Msa0552670-mRNA-1:three_prime_utr;Parent=Msa0552670-mRNA-1
chr4_1 three_prime_UTR 49334167 49334421 49334167 ID=Msa0552670-mRNA-1:three_prime_utr;Parent=Msa0552670-mRNA-1
chr4_1 three_prime_UTR 49334516 49334621 49334516 ID=Msa0552670-mRNA-1:three_prime_utr;Parent=Msa0552670-mRNA-1
Gene Sequence

>Msa0552670

ATGGCGACTCTGCAGTTCACATTCACAGACTCAACTACCACAGTATGCAGACCGTTATCTCAACTACCTTCTTCTAAATCCATCATTCATTCTCCCAGACCTCGAAGCTTCGTGGTTAAAGCTTCTCTCGAACCTTCCAGAACCAGAAGACAGTTCATTGCAGAAACCACTGCTATATCCGTGCTTGTTCCTTCTCAGTTGGCAAAGTCTGAAGATACTCTTTCTGAATGGGAAAGAGTTTATCTACCTATTGATCCTGGTGTTGTTCTTCTTGATATTGCTTTTGTTCCTGAAGATCCTAACCATGGTTTTCTTCTGGGAACGAGGCAAACCCTTTTGGAGACTAAAGATGGAGGAAGAACTTGGGCTCCACGTTCTATACCATCCGCAGAAGATGAAGATTTTAACTATAGGTTTAATTCAATCAGCTTCAAAGGGAAAGAAGGATGGATTGTGGGAAAACCTGCAATTCTGTTGTACACTCCTGATGCTGGAGAGAGTTGGGAAAGGATACCACTCAGTGCTGAACTTCCTGGTGATATGGTATACATAAAGGCAACTAATGACAAGAGTGCGGAGATGGTGACAGATGAAGGTGCAATATATGTTACCTCAAACAGAGGATACAATTGGAAGGCTGCTGTTCAGGAATCGGTGTCGGCTACTCTTAATAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACTGGAACTTTCAATACTGTCAATCGATCTCCCGATGGAAGGTATGTTGCAGTCTCAAGCCGTGGCAACTTCTACATGACCTGGGAGCCTGGTCAGGCATACTGGCAGCCACATAACAGAGCAGTTGCCAGAAGAATCCAGAACATGGGATGGAGAGCTGATGGTGGTCTCTGGCTTCTTGTTCGTGGAGGTAGTCTTTTTCTCAGCAAAGGCACAGGGATAACTGAAGAATTTGAGGAAATTCCTGTTCAAAGCCGGGGGTTTGGCATTCTTGATGTCGGATATCGTTCAACGGATGAGGCTTGGGCAGCAGGTGGCAGTGGTATTCTCTTGAGAACTAATAATGGTGGCAAGTCATGGGTCCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTAAAGTTCATTGATGACAAGAAGGGATTTGTATTGGGAAATGATGGAGTCTTGCTTCGCTACCTTGGTTAG

Protein sequence

>Msa0552670

MATLQFTFTDSTTTVCRPLSQLPSSKSIIHSPRPRSFVVKASLEPSRTRRQFIAETTAISVLVPSQLAKSEDTLSEWERVYLPIDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGGRTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTPDAGESWERIPLSAELPGDMVYIKATNDKSAEMVTDEGAIYVTSNRGYNWKAAVQESVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYMTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLVRGGSLFLSKGTGITEEFEEIPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTNNGGKSWVRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG*