AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1128850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128850 MtrunA17_Chr7g0273361 89.544 373 5 2 1 372 1 340 0.0 654
Msa1128850 MtrunA17_Chr2g0310591 32.317 164 107 2 206 367 227 388 3.91e-19 88.2
Msa1128850 MtrunA17_Chr8g0383001 29.560 159 99 3 210 366 188 335 5.49e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1128850 AT5G27290.1 69.186 344 72 2 30 372 31 341 2.55e-170 479
Msa1128850 AT5G27290.2 66.415 265 55 2 30 293 31 262 2.14e-122 354
Msa1128850 AT1G54680.3 39.881 168 91 2 214 372 51 217 1.25e-40 143
Msa1128850 AT1G54680.1 39.881 168 91 2 214 372 117 283 6.54e-40 143
Msa1128850 AT1G54680.2 39.080 174 90 2 214 372 106 278 1.39e-39 142
Msa1128850 AT1G54680.4 39.080 174 90 2 214 372 117 289 1.72e-39 142
Msa1128850 AT1G56180.1 32.927 164 104 3 210 370 228 388 8.76e-21 93.2
Msa1128850 AT2G21960.1 30.061 163 101 3 206 366 180 331 2.14e-11 65.1

Find 135 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAATGATCAAGCTCTTTC+TGG 0.207579 7_3:-80729139 None:intergenic
AATCATTTAATCAAATTCTT+TGG 0.222958 7_3:-80725710 None:intergenic
AGGATATACACTTTCTAGTT+TGG 0.265974 7_3:+80727907 Msa1128850:CDS
GAAAATTAAACCTACTTTGC+AGG 0.266567 7_3:-80729048 None:intergenic
GTTGCTGCTTGGAATGTCTT+TGG 0.278212 7_3:+80726248 Msa1128850:CDS
ACTAGTTGTGTCCAAGTTTA+CGG 0.280448 7_3:+80729289 Msa1128850:three_prime_UTR
GCTTGCCGTGGCCATGTCTC+TGG 0.290443 7_3:+80728766 Msa1128850:CDS
TGTTCTCCACCACATAAAAT+AGG 0.295589 7_3:-80725608 None:intergenic
AAAGAATTTGATTAAATGAT+TGG 0.308491 7_3:+80725712 Msa1128850:exon
GATCCTTTATGAAGAGAAAA+AGG 0.309444 7_3:+80729011 Msa1128850:three_prime_UTR
CTAGAAAGTGTATATCCTTT+AGG 0.318332 7_3:-80727902 None:intergenic
GTTTCTGTGGACTCTGGATT+TGG 0.325214 7_3:+80726313 Msa1128850:CDS
TTGGACGAATTGAAGCTAAA+TGG 0.341057 7_3:+80726137 Msa1128850:CDS
ATCCTCACCCTTGCAAGTTT+AGG 0.343038 7_3:-80725793 None:intergenic
TGCACCGAGTATCTTATATA+TGG 0.347416 7_3:+80728509 Msa1128850:CDS
TATGTAAAAGATTTGTTGTT+GGG 0.350037 7_3:-80726276 None:intergenic
AGCTGCTCTTGCACTTGTTA+AGG 0.362242 7_3:+80725897 Msa1128850:CDS
TCAGTCAGAAATACCACAAC+AGG 0.372976 7_3:+80727735 Msa1128850:CDS
CCCAACGGGCTTCAGTGTTT+CGG 0.378346 7_3:+80725934 Msa1128850:CDS
CTCATTTGAACATATTTGTA+TGG 0.392112 7_3:+80729109 Msa1128850:three_prime_UTR
TCAAGCTGGTACAGCCTTTG+TGG 0.396174 7_3:+80727961 Msa1128850:CDS
TCATTCATAGTTTCATATAG+TGG 0.398294 7_3:-80726377 None:intergenic
TGGTGGAGGTCTTGGTAGCT+TGG 0.407245 7_3:+80727688 Msa1128850:CDS
AGATTCTTTGCTCAACGGAC+TGG 0.409538 7_3:+80728652 Msa1128850:CDS
AATAAATGGGGTTGGAGATT+AGG 0.419447 7_3:+80725546 Msa1128850:five_prime_UTR
ATTGCTGTTTCTGTGGACTC+TGG 0.428658 7_3:+80726307 Msa1128850:CDS
GTGTTTCGGCGCGGCTAGAC+AGG 0.430642 7_3:+80725948 Msa1128850:CDS
AAGAGACTTCTCCGTAAACT+TGG 0.433363 7_3:-80729300 None:intergenic
TCCAATGTATAAAGCCTTTG+AGG 0.434942 7_3:-80726119 None:intergenic
TTCAGATCTATAACGGAAGT+TGG 0.436990 7_3:+80728838 Msa1128850:exon
GATTCTTTGCTCAACGGACT+GGG 0.445879 7_3:+80728653 Msa1128850:CDS
TGGTGTCATGCAGGTTAACT+CGG 0.450519 7_3:+80728313 Msa1128850:intron
TTGAACATATTTGTATGGTT+AGG 0.452276 7_3:+80729114 Msa1128850:three_prime_UTR
CCGAAACACTGAAGCCCGTT+GGG 0.454050 7_3:-80725934 None:intergenic
TTAATTATGCAGCATGAAGC+TGG 0.468510 7_3:+80727845 Msa1128850:intron
TAGTTTGGATGGTCTGATGA+AGG 0.468887 7_3:+80727922 Msa1128850:CDS
TCTCCTGTGGATACAACTCT+TGG 0.469950 7_3:+80726182 Msa1128850:CDS
TTGTTGGAGGGGTTGCTGCT+TGG 0.473306 7_3:+80726237 Msa1128850:CDS
TCGAAACTTGAACGTGTACC+AGG 0.474107 7_3:-80728880 None:intergenic
AGCTTGGTTGTTGATACAAT+TGG 0.475036 7_3:+80727704 Msa1128850:CDS
TTGATTGCTGCTATTGTTGG+AGG 0.477423 7_3:+80726224 Msa1128850:CDS
TTGTTGATTGCTGCTATTGT+TGG 0.478556 7_3:+80726221 Msa1128850:CDS
TTCCGAGACTTCGTGTGTGA+AGG 0.478726 7_3:+80728989 Msa1128850:three_prime_UTR
ATTTACAAGGCAAACCCAAC+GGG 0.479735 7_3:+80725920 Msa1128850:CDS
TATACTGTGTTCCTGCCTCC+TGG 0.483008 7_3:+80728862 Msa1128850:three_prime_UTR
TATACACTTTCTAGTTTGGA+TGG 0.483671 7_3:+80727911 Msa1128850:CDS
ATATGTAAAAGATTTGTTGT+TGG 0.485032 7_3:-80726277 None:intergenic
GTAGACAAGGAGCTAACAAA+AGG 0.485325 7_3:+80725865 Msa1128850:CDS
CTTTGGGATTGCTGTTTCTG+TGG 0.491836 7_3:+80726300 Msa1128850:CDS
GTAGGTCTCCCATCATCCCT+CGG 0.494450 7_3:+80725766 Msa1128850:CDS
TCCTCAAAGGCTTTATACAT+TGG 0.495811 7_3:+80726118 Msa1128850:CDS
AAAATTAAACCTACTTTGCA+GGG 0.497488 7_3:-80729047 None:intergenic
ATTCTCTATAATATCAATGC+AGG 0.498535 7_3:-80728804 None:intergenic
TTAGGTTGCCCGAGGGATGA+TGG 0.499093 7_3:-80725775 None:intergenic
CTGGTTGGAATACTTCCTAA+AGG 0.508155 7_3:+80727887 Msa1128850:CDS
GTGATGTAACCCTGCAAAGT+AGG 0.509036 7_3:+80729038 Msa1128850:three_prime_UTR
ATGTCTCTGGGAAGTTCTGT+AGG 0.515688 7_3:+80728779 Msa1128850:CDS
TGCGTCGGCATGAAGCGGCT+CGG 0.517038 7_3:+80728738 Msa1128850:CDS
TTTCATGTATAGCCTTGGCC+GGG 0.517216 7_3:+80728483 Msa1128850:CDS
TTATGCAAGCAGAATGTGAA+TGG 0.518434 7_3:+80728937 Msa1128850:three_prime_UTR
TTGTCTGCTGCTAGAAACCT+TGG 0.520128 7_3:-80725827 None:intergenic
AGGCAGATTCTCAAGTTAGA+TGG 0.520302 7_3:+80728690 Msa1128850:CDS
AACCTAAACTTGCAAGGGTG+AGG 0.520694 7_3:+80725791 Msa1128850:CDS
GGTGTCATGCAGGTTAACTC+GGG 0.525542 7_3:+80728314 Msa1128850:intron
CTTGCCGTGGCCATGTCTCT+GGG 0.529052 7_3:+80728767 Msa1128850:CDS
TCAATGTTTCAGATCTATAA+CGG 0.529311 7_3:+80728831 Msa1128850:CDS
TGATTGCTGCTATTGTTGGA+GGG 0.533663 7_3:+80726225 Msa1128850:CDS
ACTGGGCTTCACACAGAAGA+AGG 0.533968 7_3:+80728670 Msa1128850:CDS
TAGGTTGCCCGAGGGATGAT+GGG 0.534094 7_3:-80725774 None:intergenic
TAGACAAGGAGCTAACAAAA+GGG 0.534186 7_3:+80725866 Msa1128850:CDS
ATCCTTCACACACGAAGTCT+CGG 0.534600 7_3:-80728991 None:intergenic
TATACAGTTCATGACTCTAC+AGG 0.536298 7_3:+80729172 Msa1128850:three_prime_UTR
GATTGCTGCTATTGTTGGAG+GGG 0.542235 7_3:+80726226 Msa1128850:CDS
GTGACAATGCCTCAGCTACA+TGG 0.542711 7_3:-80729211 None:intergenic
TGCTTGCATAAGATATGACC+AGG 0.544764 7_3:-80728925 None:intergenic
GCACTTGTTAAGGATTTACA+AGG 0.547995 7_3:+80725907 Msa1128850:CDS
CATGGTGTCTGTGTGGGCGT+AGG 0.550618 7_3:+80725748 Msa1128850:CDS
TAGGTCTCCCATCATCCCTC+GGG 0.551003 7_3:+80725767 Msa1128850:CDS
AATTCCATTCGGTGTTACCC+TGG 0.553341 7_3:+80728907 Msa1128850:three_prime_UTR
TTGTGTGCAATAAATGGGGT+TGG 0.553705 7_3:+80725538 None:intergenic
GGCGGTGTGTACAAAGCGCA+TGG 0.556210 7_3:-80729373 None:intergenic
TAGAAACCTTGGTTGAGCAT+TGG 0.557145 7_3:-80725816 None:intergenic
ACAGACATGGTCGCATGGCG+TGG 0.557533 7_3:+80725661 Msa1128850:five_prime_UTR
TTGGTATTACTACTTGCACC+TGG 0.558711 7_3:+80726332 Msa1128850:CDS
TAGTTAGATTCTTTGCTCAA+CGG 0.559584 7_3:+80728647 Msa1128850:intron
CTGATGCATGGTGTCTGTGT+GGG 0.560006 7_3:+80725742 Msa1128850:CDS
GCCGAAACACTGAAGCCCGT+TGG 0.562867 7_3:-80725935 None:intergenic
GTGGTGGAGAACAAATTGAA+TGG 0.564578 7_3:+80725618 Msa1128850:five_prime_UTR
TCGGGCAACCTAAACTTGCA+AGG 0.567337 7_3:+80725785 Msa1128850:CDS
AATGCAGTAAATTTGAGTCC+AGG 0.568740 7_3:-80726350 None:intergenic
GTCACTACTCACTAGCATAA+CGG 0.571660 7_3:+80729229 Msa1128850:three_prime_UTR
AGGTTTGGATGACATAAGAA+AGG 0.577567 7_3:+80728544 Msa1128850:CDS
TTGAACGTGTACCAGGAGGC+AGG 0.578894 7_3:-80728873 None:intergenic
TTTGGATGGTCTGATGAAGG+AGG 0.579418 7_3:+80727925 Msa1128850:CDS
CTCGGGGAAGGTATCAGCTA+CGG 0.581377 7_3:+80728331 Msa1128850:CDS
TTGGATGGTCTGATGAAGGA+GGG 0.582343 7_3:+80727926 Msa1128850:CDS
CTTTGACAGACATGGTCGCA+TGG 0.583647 7_3:+80725656 Msa1128850:five_prime_UTR
TTACTATGCAGGTTCCTCAA+AGG 0.584607 7_3:+80726105 Msa1128850:intron
GGCTCGGTCTAAGCTTGCCG+TGG 0.586220 7_3:+80728754 Msa1128850:CDS
GGTTCTCTCAATATTCAAGC+TGG 0.589212 7_3:+80727947 Msa1128850:CDS
CACAGGAGATAGAAGAGACA+TGG 0.591418 7_3:-80726168 None:intergenic
AAGATACTCGGTGCATACCC+CGG 0.592613 7_3:-80728501 None:intergenic
CATGCGACCATGTCTGTCAA+AGG 0.595737 7_3:-80725655 None:intergenic
ATGACCAGGGTAACACCGAA+TGG 0.597764 7_3:-80728911 None:intergenic
CGGGCAACCTAAACTTGCAA+GGG 0.599823 7_3:+80725786 Msa1128850:CDS
GAGCCGCTTCATGCCGACGC+AGG 0.600999 7_3:-80728736 None:intergenic
TGCAAGTTTAGGTTGCCCGA+GGG 0.604363 7_3:-80725782 None:intergenic
TGACTTGAGCAACCCTGTTG+TGG 0.608572 7_3:-80727748 None:intergenic
ACTCCTGCGTCGGCATGAAG+CGG 0.614282 7_3:+80728733 Msa1128850:CDS
GAACCAAGAGTTGTATCCAC+AGG 0.614813 7_3:-80726185 None:intergenic
ACACAGTCTTACTCCTGCGT+CGG 0.616405 7_3:+80728723 Msa1128850:CDS
GATTTACAAGGCAAACCCAA+CGG 0.620582 7_3:+80725919 Msa1128850:CDS
CATGTCTCTTCTATCTCCTG+TGG 0.624063 7_3:+80726169 Msa1128850:CDS
TTCATGTATAGCCTTGGCCG+GGG 0.624932 7_3:+80728484 Msa1128850:CDS
TTGCAAGTTTAGGTTGCCCG+AGG 0.626994 7_3:-80725783 None:intergenic
TACAGAACTTCCCAGAGACA+TGG 0.630261 7_3:-80728777 None:intergenic
AGTCTTTGACCATGTAGCTG+AGG 0.631906 7_3:+80729202 Msa1128850:three_prime_UTR
TCTGATGCATGGTGTCTGTG+TGG 0.635410 7_3:+80725741 Msa1128850:CDS
GGATAAAGTATATATAGTTG+AGG 0.636038 7_3:+80729073 Msa1128850:three_prime_UTR
AAATCCATATATAAGATACT+CGG 0.638034 7_3:-80728513 None:intergenic
ATTGCTTGAAAGTGTAGACA+AGG 0.647018 7_3:+80725852 Msa1128850:CDS
GTGTCATGCAGGTTAACTCG+GGG 0.656072 7_3:+80728315 Msa1128850:intron
CATGCAGGTTAACTCGGGGA+AGG 0.658485 7_3:+80728319 Msa1128850:intron
GAGAAACTCAAAATCCACAA+AGG 0.662893 7_3:-80727975 None:intergenic
ACAACAGCCTTTGACAGACA+TGG 0.666551 7_3:+80725648 Msa1128850:five_prime_UTR
GGTGGTTCTTCTGTGAGACA+TGG 0.671088 7_3:-80726410 None:intergenic
CGGGCTTCAGTGTTTCGGCG+CGG 0.680129 7_3:+80725939 Msa1128850:CDS
CAGTCAGAAATACCACAACA+GGG 0.684532 7_3:+80727736 Msa1128850:CDS
ATTGGTTTGAGTCTGATGCA+TGG 0.684860 7_3:+80725730 Msa1128850:CDS
GAGGATCCAATGCTCAACCA+AGG 0.692642 7_3:+80725810 Msa1128850:CDS
ACTTCCCAGAGACATGGCCA+CGG 0.694284 7_3:-80728771 None:intergenic
AGACAAGGAGCTAACAAAAG+GGG 0.696044 7_3:+80725867 Msa1128850:CDS
AAACTTGAACGTGTACCAGG+AGG 0.734099 7_3:-80728877 None:intergenic
GCTTGCATAAGATATGACCA+GGG 0.755763 7_3:-80728924 None:intergenic
ACGGAGAAGTCTCTTCAACG+AGG 0.770669 7_3:+80729308 Msa1128850:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTGTTAAATACT+AGG - chr7_3:80726872-80726891 None:intergenic 10.0%
!! ATAATATAAATATGTATATG+CGG + chr7_3:80727022-80727041 Msa1128850:intron 10.0%
!! ATAAAAAAAAAAATTTCAGA+CGG - chr7_3:80729492-80729511 None:intergenic 10.0%
!! AATCATTTAATCAAATTCTT+TGG - chr7_3:80725713-80725732 None:intergenic 15.0%
!! AAAGAATTTGATTAAATGAT+TGG + chr7_3:80725712-80725731 Msa1128850:exon 15.0%
!! TAATATAAATATGTATATGC+GGG + chr7_3:80727023-80727042 Msa1128850:intron 15.0%
!!! GTTTTTTTTCTTCATATATA+GGG - chr7_3:80727209-80727228 None:intergenic 15.0%
!!! AGTTTTTTTTCTTCATATAT+AGG - chr7_3:80727210-80727229 None:intergenic 15.0%
!! AAAATAGTGCATTAAATATA+CGG - chr7_3:80728026-80728045 None:intergenic 15.0%
!!! AAGGAAAACTATTTTTTATT+CGG - chr7_3:80729398-80729417 None:intergenic 15.0%
!!! TATGTAAAAGATTTGTTGTT+GGG - chr7_3:80726279-80726298 None:intergenic 20.0%
!!! ATATGTAAAAGATTTGTTGT+TGG - chr7_3:80726280-80726299 None:intergenic 20.0%
!!! ACAAATCTTTTACATATCTT+TGG + chr7_3:80726283-80726302 Msa1128850:CDS 20.0%
!!! CAAATCTTTTACATATCTTT+GGG + chr7_3:80726284-80726303 Msa1128850:CDS 20.0%
!! AGCTTATAGTTTATATGAAT+AGG + chr7_3:80726589-80726608 Msa1128850:intron 20.0%
!! GCTTATAGTTTATATGAATA+GGG + chr7_3:80726590-80726609 Msa1128850:intron 20.0%
!!! AAACATCCTTTAAAAATTGA+TGG + chr7_3:80726899-80726918 Msa1128850:intron 20.0%
!!! TATTGTACTATGTAGTTTTT+AGG + chr7_3:80726928-80726947 Msa1128850:intron 20.0%
!! ATAAAATGTTTCATTCGTAT+TGG - chr7_3:80727467-80727486 None:intergenic 20.0%
!!! AGTTATGATGTTGTTTTATA+AGG - chr7_3:80727517-80727536 None:intergenic 20.0%
!! ACTAAAATTAGATGTTTGTA+AGG - chr7_3:80728367-80728386 None:intergenic 20.0%
!! TGTCTAATAACATAAAACAA+AGG - chr7_3:80728453-80728472 None:intergenic 20.0%
!! AAATCCATATATAAGATACT+CGG - chr7_3:80728516-80728535 None:intergenic 20.0%
!!! TTATTTTTTGTCATGAGAAA+TGG + chr7_3:80728574-80728593 Msa1128850:intron 20.0%
!!! AGGAAAACTATTTTTTATTC+GGG - chr7_3:80729397-80729416 None:intergenic 20.0%
!! AACAGTTCTTTCAAAAATAA+AGG - chr7_3:80729550-80729569 None:intergenic 20.0%
!! ATTATGTCTCCTATTTTATG+TGG + chr7_3:80725599-80725618 Msa1128850:five_prime_UTR 25.0%
! TCATTCATAGTTTCATATAG+TGG - chr7_3:80726380-80726399 None:intergenic 25.0%
! ATCCTTAACATATGTAAAAC+AGG - chr7_3:80726434-80726453 None:intergenic 25.0%
!! ACATATGTTAAGGATTTGTT+TGG + chr7_3:80726439-80726458 Msa1128850:intron 25.0%
!! CTATAAGCTTTTTATAAGCA+GGG - chr7_3:80726578-80726597 None:intergenic 25.0%
!! ACTATAAGCTTTTTATAAGC+AGG - chr7_3:80726579-80726598 None:intergenic 25.0%
! ATAGTTTATATGAATAGGGA+TGG + chr7_3:80726594-80726613 Msa1128850:intron 25.0%
!!! TTTTTTACATACGTGGTTAT+GGG - chr7_3:80726659-80726678 None:intergenic 25.0%
!!! ATTTTTTACATACGTGGTTA+TGG - chr7_3:80726660-80726679 None:intergenic 25.0%
!! TATTTTCATAGTTAAAGTGC+GGG - chr7_3:80726776-80726795 None:intergenic 25.0%
!! GTATTTTCATAGTTAAAGTG+CGG - chr7_3:80726777-80726796 None:intergenic 25.0%
! TCACAGTTGAAATAAAACTA+TGG + chr7_3:80726807-80726826 Msa1128850:intron 25.0%
!! ACTGATCCATCAATTTTTAA+AGG - chr7_3:80726908-80726927 None:intergenic 25.0%
!!! ACTATGTAGTTTTTAGGTTT+AGG + chr7_3:80726934-80726953 Msa1128850:intron 25.0%
!! TTTTTCTTCATATATAGGGA+TGG - chr7_3:80727205-80727224 None:intergenic 25.0%
!!! TGAAATAGCATTTTTCGATA+AGG - chr7_3:80727431-80727450 None:intergenic 25.0%
!! TCATCAAATTGATTGTTTTC+AGG + chr7_3:80727658-80727677 Msa1128850:intron 25.0%
! CCAGATAAGCAATTAAAAAA+TGG - chr7_3:80727871-80727890 None:intergenic 25.0%
!!! CCATTTTTTAATTGCTTATC+TGG + chr7_3:80727868-80727887 Msa1128850:CDS 25.0%
!!! TTTTTAATTGCTTATCTGGT+TGG + chr7_3:80727872-80727891 Msa1128850:CDS 25.0%
!!! TGCACTATTTTTACTTTCAA+AGG + chr7_3:80728035-80728054 Msa1128850:intron 25.0%
! CATAAATATTATTGAGTCAC+TGG - chr7_3:80728188-80728207 None:intergenic 25.0%
!! ATGTTGATTGTTATTACCTT+TGG + chr7_3:80728293-80728312 Msa1128850:intron 25.0%
! AAAATTAGATGTTTGTAAGG+CGG - chr7_3:80728364-80728383 None:intergenic 25.0%
!! CTTATATATGGATTTTCTGA+AGG + chr7_3:80728521-80728540 Msa1128850:CDS 25.0%
! TATTAATGTCAATACCATGT+GGG - chr7_3:80728604-80728623 None:intergenic 25.0%
! TTATTAATGTCAATACCATG+TGG - chr7_3:80728605-80728624 None:intergenic 25.0%
! ATTCTCTATAATATCAATGC+AGG - chr7_3:80728807-80728826 None:intergenic 25.0%
! TCAATGTTTCAGATCTATAA+CGG + chr7_3:80728831-80728850 Msa1128850:CDS 25.0%
! GTTTCGAAAAAAATTCCATT+CGG + chr7_3:80728896-80728915 Msa1128850:three_prime_UTR 25.0%
! AAAATTAAACCTACTTTGCA+GGG - chr7_3:80729050-80729069 None:intergenic 25.0%
!!! CAAAGTAGGTTTAATTTTCA+AGG + chr7_3:80729052-80729071 Msa1128850:three_prime_UTR 25.0%
! GGATAAAGTATATATAGTTG+AGG + chr7_3:80729073-80729092 Msa1128850:three_prime_UTR 25.0%
! CTCATTTGAACATATTTGTA+TGG + chr7_3:80729109-80729128 Msa1128850:three_prime_UTR 25.0%
! TTGAACATATTTGTATGGTT+AGG + chr7_3:80729114-80729133 Msa1128850:three_prime_UTR 25.0%
!!! AAAACTATTTTTTATTCGGG+CGG - chr7_3:80729394-80729413 None:intergenic 25.0%
! AGCAGTTCTTTCAAAAATAA+AGG - chr7_3:80729417-80729436 None:intergenic 25.0%
CAAATCAAATTCACTCAGAA+CGG - chr7_3:80726011-80726030 None:intergenic 30.0%
ATAACTCAAGACTAACATCA+AGG - chr7_3:80726045-80726064 None:intergenic 30.0%
! TAGTCTTGAGTTATGAAGTT+AGG + chr7_3:80726051-80726070 Msa1128850:intron 30.0%
CTTAACATATGTAAAACAGG+TGG - chr7_3:80726431-80726450 None:intergenic 30.0%
! CACCTGTTTTACATATGTTA+AGG + chr7_3:80726429-80726448 Msa1128850:intron 30.0%
! TGTTAAGGATTTGTTTGGAT+TGG + chr7_3:80726444-80726463 Msa1128850:intron 30.0%
! TTTTTACATACGTGGTTATG+GGG - chr7_3:80726658-80726677 None:intergenic 30.0%
AATTTAAATGGGTATGGGTA+CGG - chr7_3:80727079-80727098 None:intergenic 30.0%
TATTCCCCGCAAATTTAAAT+GGG - chr7_3:80727090-80727109 None:intergenic 30.0%
CGATGATTGATAAACAAACT+TGG - chr7_3:80727553-80727572 None:intergenic 30.0%
! CTAGAAAGTGTATATCCTTT+AGG - chr7_3:80727905-80727924 None:intergenic 30.0%
!! AGGATATACACTTTCTAGTT+TGG + chr7_3:80727907-80727926 Msa1128850:CDS 30.0%
!! TATACACTTTCTAGTTTGGA+TGG + chr7_3:80727911-80727930 Msa1128850:CDS 30.0%
!! AGAGAGAAAAAGTATCTACT+AGG + chr7_3:80728066-80728085 Msa1128850:intron 30.0%
AAAATAGATGCGAAAAGACA+AGG - chr7_3:80728162-80728181 None:intergenic 30.0%
! CAAATTTTCATGTATAGCCT+TGG + chr7_3:80728478-80728497 Msa1128850:CDS 30.0%
!! ATATATGGATTTTCTGAAGG+AGG + chr7_3:80728524-80728543 Msa1128850:CDS 30.0%
TAGTTAGATTCTTTGCTCAA+CGG + chr7_3:80728647-80728666 Msa1128850:intron 30.0%
GATCCTTTATGAAGAGAAAA+AGG + chr7_3:80729011-80729030 Msa1128850:three_prime_UTR 30.0%
! TGTCCTTTTTCTCTTCATAA+AGG - chr7_3:80729017-80729036 None:intergenic 30.0%
GAAAATTAAACCTACTTTGC+AGG - chr7_3:80729051-80729070 None:intergenic 30.0%
AATAAATGGGGTTGGAGATT+AGG + chr7_3:80725546-80725565 Msa1128850:five_prime_UTR 35.0%
! ATGTCTCCTATTTTATGTGG+TGG + chr7_3:80725602-80725621 Msa1128850:five_prime_UTR 35.0%
TGTTCTCCACCACATAAAAT+AGG - chr7_3:80725611-80725630 None:intergenic 35.0%
! ATTGCTTGAAAGTGTAGACA+AGG + chr7_3:80725852-80725871 Msa1128850:CDS 35.0%
TAGACAAGGAGCTAACAAAA+GGG + chr7_3:80725866-80725885 Msa1128850:CDS 35.0%
! GCACTTGTTAAGGATTTACA+AGG + chr7_3:80725907-80725926 Msa1128850:CDS 35.0%
CACTCAGAACGGATATAAAA+TGG - chr7_3:80726000-80726019 None:intergenic 35.0%
TCAAGACTAACATCAAGGAT+GGG - chr7_3:80726040-80726059 None:intergenic 35.0%
TGTTGTGTGAATTACTATGC+AGG + chr7_3:80726094-80726113 Msa1128850:intron 35.0%
! TCCTCAAAGGCTTTATACAT+TGG + chr7_3:80726118-80726137 Msa1128850:CDS 35.0%
TCCAATGTATAAAGCCTTTG+AGG - chr7_3:80726122-80726141 None:intergenic 35.0%
TTGGACGAATTGAAGCTAAA+TGG + chr7_3:80726137-80726156 Msa1128850:CDS 35.0%
! TTGTTGATTGCTGCTATTGT+TGG + chr7_3:80726221-80726240 Msa1128850:CDS 35.0%
AATGCAGTAAATTTGAGTCC+AGG - chr7_3:80726353-80726372 None:intergenic 35.0%
!! AGACTTTTTGAGAGAGCATA+TGG + chr7_3:80726503-80726522 Msa1128850:intron 35.0%
TATATGAATAGGGATGGCAA+TGG + chr7_3:80726600-80726619 Msa1128850:intron 35.0%
ATATGAATAGGGATGGCAAT+GGG + chr7_3:80726601-80726620 Msa1128850:intron 35.0%
!!! ACGGGTATTTTTTACATACG+TGG - chr7_3:80726666-80726685 None:intergenic 35.0%
ATAGTTAAAGTGCGGGTAAT+GGG - chr7_3:80726769-80726788 None:intergenic 35.0%
! AAATATGTATATGCGGGTTG+CGG + chr7_3:80727029-80727048 Msa1128850:intron 35.0%
ATTTAAATGGGTATGGGTAC+GGG - chr7_3:80727078-80727097 None:intergenic 35.0%
CCGCAAATTTAAATGGGTAT+GGG - chr7_3:80727084-80727103 None:intergenic 35.0%
CCCATACCCATTTAAATTTG+CGG + chr7_3:80727081-80727100 Msa1128850:intron 35.0%
CCATACCCATTTAAATTTGC+GGG + chr7_3:80727082-80727101 Msa1128850:intron 35.0%
CATACCCATTTAAATTTGCG+GGG + chr7_3:80727083-80727102 Msa1128850:intron 35.0%
GTATTCCCCGCAAATTTAAA+TGG - chr7_3:80727091-80727110 None:intergenic 35.0%
AAAAATACCCACAATGGGTA+GGG - chr7_3:80727151-80727170 None:intergenic 35.0%
AAAAAATACCCACAATGGGT+AGG - chr7_3:80727152-80727171 None:intergenic 35.0%
TCATATATAGGGATGGCAAT+TGG - chr7_3:80727198-80727217 None:intergenic 35.0%
TAAGGAAAAATCAGCATACG+AGG - chr7_3:80727499-80727518 None:intergenic 35.0%
TTACTGAAGTAGCATGTAAG+CGG - chr7_3:80727614-80727633 None:intergenic 35.0%
CATAAAAAATCTCCATGCAC+TGG - chr7_3:80727637-80727656 None:intergenic 35.0%
!!! GATTGTTTTCAGGTCTCTTT+TGG + chr7_3:80727668-80727687 Msa1128850:intron 35.0%
AGCTTGGTTGTTGATACAAT+TGG + chr7_3:80727704-80727723 Msa1128850:CDS 35.0%
TTAATTATGCAGCATGAAGC+TGG + chr7_3:80727845-80727864 Msa1128850:intron 35.0%
GAGAAACTCAAAATCCACAA+AGG - chr7_3:80727978-80727997 None:intergenic 35.0%
! TTTGAGTTTCTCGAAGAAGT+TGG + chr7_3:80727986-80728005 Msa1128850:intron 35.0%
TTATCGAGTAGACCATAAAC+TGG + chr7_3:80728251-80728270 Msa1128850:intron 35.0%
TATCGAGTAGACCATAAACT+GGG + chr7_3:80728252-80728271 Msa1128850:intron 35.0%
TGCACCGAGTATCTTATATA+TGG + chr7_3:80728509-80728528 Msa1128850:CDS 35.0%
AGGTTTGGATGACATAAGAA+AGG + chr7_3:80728544-80728563 Msa1128850:CDS 35.0%
! TTCAGATCTATAACGGAAGT+TGG + chr7_3:80728838-80728857 Msa1128850:exon 35.0%
TTATGCAAGCAGAATGTGAA+TGG + chr7_3:80728937-80728956 Msa1128850:three_prime_UTR 35.0%
! TGGCTTTTGTTACAGTTGAA+CGG + chr7_3:80728957-80728976 Msa1128850:three_prime_UTR 35.0%
TATACAGTTCATGACTCTAC+AGG + chr7_3:80729172-80729191 Msa1128850:three_prime_UTR 35.0%
ACTAGTTGTGTCCAAGTTTA+CGG + chr7_3:80729289-80729308 Msa1128850:three_prime_UTR 35.0%
! GTGGTGGAGAACAAATTGAA+TGG + chr7_3:80725618-80725637 Msa1128850:five_prime_UTR 40.0%
!! ATTGGTTTGAGTCTGATGCA+TGG + chr7_3:80725730-80725749 Msa1128850:CDS 40.0%
TAGAAACCTTGGTTGAGCAT+TGG - chr7_3:80725819-80725838 None:intergenic 40.0%
GTAGACAAGGAGCTAACAAA+AGG + chr7_3:80725865-80725884 Msa1128850:CDS 40.0%
AGACAAGGAGCTAACAAAAG+GGG + chr7_3:80725867-80725886 Msa1128850:CDS 40.0%
GATTTACAAGGCAAACCCAA+CGG + chr7_3:80725919-80725938 Msa1128850:CDS 40.0%
ATTTACAAGGCAAACCCAAC+GGG + chr7_3:80725920-80725939 Msa1128850:CDS 40.0%
CTCAAGACTAACATCAAGGA+TGG - chr7_3:80726041-80726060 None:intergenic 40.0%
TTACTATGCAGGTTCCTCAA+AGG + chr7_3:80726105-80726124 Msa1128850:intron 40.0%
TTGATTGCTGCTATTGTTGG+AGG + chr7_3:80726224-80726243 Msa1128850:CDS 40.0%
TGATTGCTGCTATTGTTGGA+GGG + chr7_3:80726225-80726244 Msa1128850:CDS 40.0%
TTGGTATTACTACTTGCACC+TGG + chr7_3:80726332-80726351 Msa1128850:CDS 40.0%
ACTGTAATACCCTACCCATA+GGG - chr7_3:80726629-80726648 None:intergenic 40.0%
CATAGTTAAAGTGCGGGTAA+TGG - chr7_3:80726770-80726789 None:intergenic 40.0%
! AATATGTATATGCGGGTTGC+GGG + chr7_3:80727030-80727049 Msa1128850:intron 40.0%
CCCGCAAATTTAAATGGGTA+TGG - chr7_3:80727085-80727104 None:intergenic 40.0%
TTAAATTTGCGGGGAATACC+CGG + chr7_3:80727092-80727111 Msa1128850:intron 40.0%
CCGCAAAAAATACCCACAAT+GGG - chr7_3:80727156-80727175 None:intergenic 40.0%
!!! CCCATTGTGGGTATTTTTTG+CGG + chr7_3:80727153-80727172 Msa1128850:intron 40.0%
!!! CCATTGTGGGTATTTTTTGC+GGG + chr7_3:80727154-80727173 Msa1128850:intron 40.0%
!!! TATTTTTTGCGGGTACCCAT+CGG + chr7_3:80727164-80727183 Msa1128850:intron 40.0%
TGTTCAGCAAAGATTCTGTC+TGG - chr7_3:80727284-80727303 None:intergenic 40.0%
!! TTTTTCTACCCCTGACTTGT+TGG + chr7_3:80727388-80727407 Msa1128850:intron 40.0%
!!! TTTTCTACCCCTGACTTGTT+GGG + chr7_3:80727389-80727408 Msa1128850:intron 40.0%
CGGACAAACATAGATGTAAC+GGG - chr7_3:80727594-80727613 None:intergenic 40.0%
GCGGACAAACATAGATGTAA+CGG - chr7_3:80727595-80727614 None:intergenic 40.0%
!!! TGTTTTCAGGTCTCTTTTGG+TGG + chr7_3:80727671-80727690 Msa1128850:intron 40.0%
TCAGTCAGAAATACCACAAC+AGG + chr7_3:80727735-80727754 Msa1128850:CDS 40.0%
CAGTCAGAAATACCACAACA+GGG + chr7_3:80727736-80727755 Msa1128850:CDS 40.0%
CTGGTTGGAATACTTCCTAA+AGG + chr7_3:80727887-80727906 Msa1128850:CDS 40.0%
TAGTTTGGATGGTCTGATGA+AGG + chr7_3:80727922-80727941 Msa1128850:CDS 40.0%
GGTTCTCTCAATATTCAAGC+TGG + chr7_3:80727947-80727966 Msa1128850:CDS 40.0%
TAGGACAGGTATTCATGCAA+AGG - chr7_3:80728099-80728118 None:intergenic 40.0%
TTGCTGCTAAATTGCGACAA+GGG - chr7_3:80728137-80728156 None:intergenic 40.0%
ATCGAGTAGACCATAAACTG+GGG + chr7_3:80728253-80728272 Msa1128850:intron 40.0%
!! TATTACCTTTGGTGTCATGC+AGG + chr7_3:80728304-80728323 Msa1128850:intron 40.0%
!! TTTTCATGTATAGCCTTGGC+CGG + chr7_3:80728482-80728501 Msa1128850:CDS 40.0%
!! TGGATTTTCTGAAGGAGGTT+TGG + chr7_3:80728529-80728548 Msa1128850:CDS 40.0%
AGGCAGATTCTCAAGTTAGA+TGG + chr7_3:80728690-80728709 Msa1128850:CDS 40.0%
GCTTGCATAAGATATGACCA+GGG - chr7_3:80728927-80728946 None:intergenic 40.0%
TGCTTGCATAAGATATGACC+AGG - chr7_3:80728928-80728947 None:intergenic 40.0%
! GGCTTTTGTTACAGTTGAAC+GGG + chr7_3:80728958-80728977 Msa1128850:three_prime_UTR 40.0%
GACAATGATCAAGCTCTTTC+TGG - chr7_3:80729142-80729161 None:intergenic 40.0%
GTCACTACTCACTAGCATAA+CGG + chr7_3:80729229-80729248 Msa1128850:three_prime_UTR 40.0%
AAGAGACTTCTCCGTAAACT+TGG - chr7_3:80729303-80729322 None:intergenic 40.0%
ACAACAGCCTTTGACAGACA+TGG + chr7_3:80725648-80725667 Msa1128850:five_prime_UTR 45.0%
AACCTAAACTTGCAAGGGTG+AGG + chr7_3:80725791-80725810 Msa1128850:CDS 45.0%
ATCCTCACCCTTGCAAGTTT+AGG - chr7_3:80725796-80725815 None:intergenic 45.0%
TTGTCTGCTGCTAGAAACCT+TGG - chr7_3:80725830-80725849 None:intergenic 45.0%
! AGCTGCTCTTGCACTTGTTA+AGG + chr7_3:80725897-80725916 Msa1128850:CDS 45.0%
CACAGGAGATAGAAGAGACA+TGG - chr7_3:80726171-80726190 None:intergenic 45.0%
CATGTCTCTTCTATCTCCTG+TGG + chr7_3:80726169-80726188 Msa1128850:CDS 45.0%
TCTCCTGTGGATACAACTCT+TGG + chr7_3:80726182-80726201 Msa1128850:CDS 45.0%
GAACCAAGAGTTGTATCCAC+AGG - chr7_3:80726188-80726207 None:intergenic 45.0%
GATTGCTGCTATTGTTGGAG+GGG + chr7_3:80726226-80726245 Msa1128850:CDS 45.0%
! GTTGCTGCTTGGAATGTCTT+TGG + chr7_3:80726248-80726267 Msa1128850:CDS 45.0%
!! CTTTGGGATTGCTGTTTCTG+TGG + chr7_3:80726300-80726319 Msa1128850:CDS 45.0%
!! ATTGCTGTTTCTGTGGACTC+TGG + chr7_3:80726307-80726326 Msa1128850:CDS 45.0%
GTTTCTGTGGACTCTGGATT+TGG + chr7_3:80726313-80726332 Msa1128850:CDS 45.0%
CACTGTAATACCCTACCCAT+AGG - chr7_3:80726630-80726649 None:intergenic 45.0%
ACATACGTGGTTATGGGGAA+GGG - chr7_3:80726653-80726672 None:intergenic 45.0%
TACATACGTGGTTATGGGGA+AGG - chr7_3:80726654-80726673 None:intergenic 45.0%
ACTAAAGTTGTTGCCCACGA+GGG - chr7_3:80726702-80726721 None:intergenic 45.0%
! TAAGGTGCCCATAGGATATG+GGG - chr7_3:80726731-80726750 None:intergenic 45.0%
! CTAAGGTGCCCATAGGATAT+GGG - chr7_3:80726732-80726751 None:intergenic 45.0%
! ACTAAGGTGCCCATAGGATA+TGG - chr7_3:80726733-80726752 None:intergenic 45.0%
! ATATGTATATGCGGGTTGCG+GGG + chr7_3:80727031-80727050 Msa1128850:intron 45.0%
! GGTTTTACCCTACCCATTGT+GGG + chr7_3:80727141-80727160 Msa1128850:intron 45.0%
CCCGCAAAAAATACCCACAA+TGG - chr7_3:80727157-80727176 None:intergenic 45.0%
!!! ATTTTTTGCGGGTACCCATC+GGG + chr7_3:80727165-80727184 Msa1128850:intron 45.0%
!! TTTCTACCCCTGACTTGTTG+GGG + chr7_3:80727390-80727409 Msa1128850:intron 45.0%
CTACTTCAGTAACCAGTGCA+TGG + chr7_3:80727622-80727641 Msa1128850:intron 45.0%
!! TTTCAGGTCTCTTTTGGTGG+AGG + chr7_3:80727674-80727693 Msa1128850:intron 45.0%
TTTGGATGGTCTGATGAAGG+AGG + chr7_3:80727925-80727944 Msa1128850:CDS 45.0%
TTGGATGGTCTGATGAAGGA+GGG + chr7_3:80727926-80727945 Msa1128850:CDS 45.0%
CAAACTCAGACTACTAGGAC+AGG - chr7_3:80728113-80728132 None:intergenic 45.0%
AGGGTCAAACTCAGACTACT+AGG - chr7_3:80728118-80728137 None:intergenic 45.0%
CTTGCTGCTAAATTGCGACA+AGG - chr7_3:80728138-80728157 None:intergenic 45.0%
CGTCAACTAACCCCAGTTTA+TGG - chr7_3:80728266-80728285 None:intergenic 45.0%
GTTAACCTGCATGACACCAA+AGG - chr7_3:80728312-80728331 None:intergenic 45.0%
!! TGGTGTCATGCAGGTTAACT+CGG + chr7_3:80728313-80728332 Msa1128850:intron 45.0%
! TTTCATGTATAGCCTTGGCC+GGG + chr7_3:80728483-80728502 Msa1128850:CDS 45.0%
TGAGAAATGGAATGCCCACA+TGG + chr7_3:80728587-80728606 Msa1128850:intron 45.0%
AGATTCTTTGCTCAACGGAC+TGG + chr7_3:80728652-80728671 Msa1128850:CDS 45.0%
! GATTCTTTGCTCAACGGACT+GGG + chr7_3:80728653-80728672 Msa1128850:CDS 45.0%
TACAGAACTTCCCAGAGACA+TGG - chr7_3:80728780-80728799 None:intergenic 45.0%
! ATGTCTCTGGGAAGTTCTGT+AGG + chr7_3:80728779-80728798 Msa1128850:CDS 45.0%
AAACTTGAACGTGTACCAGG+AGG - chr7_3:80728880-80728899 None:intergenic 45.0%
TCGAAACTTGAACGTGTACC+AGG - chr7_3:80728883-80728902 None:intergenic 45.0%
!! AATTCCATTCGGTGTTACCC+TGG + chr7_3:80728907-80728926 Msa1128850:three_prime_UTR 45.0%
ATCCTTCACACACGAAGTCT+CGG - chr7_3:80728994-80729013 None:intergenic 45.0%
GTGATGTAACCCTGCAAAGT+AGG + chr7_3:80729038-80729057 Msa1128850:three_prime_UTR 45.0%
AGTCTTTGACCATGTAGCTG+AGG + chr7_3:80729202-80729221 Msa1128850:three_prime_UTR 45.0%
CATGCGACCATGTCTGTCAA+AGG - chr7_3:80725658-80725677 None:intergenic 50.0%
CTTTGACAGACATGGTCGCA+TGG + chr7_3:80725656-80725675 Msa1128850:five_prime_UTR 50.0%
TCTGATGCATGGTGTCTGTG+TGG + chr7_3:80725741-80725760 Msa1128850:CDS 50.0%
CTGATGCATGGTGTCTGTGT+GGG + chr7_3:80725742-80725761 Msa1128850:CDS 50.0%
!! TGCAAGTTTAGGTTGCCCGA+GGG - chr7_3:80725785-80725804 None:intergenic 50.0%
!! TTGCAAGTTTAGGTTGCCCG+AGG - chr7_3:80725786-80725805 None:intergenic 50.0%
TCGGGCAACCTAAACTTGCA+AGG + chr7_3:80725785-80725804 Msa1128850:CDS 50.0%
CGGGCAACCTAAACTTGCAA+GGG + chr7_3:80725786-80725805 Msa1128850:CDS 50.0%
GAGGATCCAATGCTCAACCA+AGG + chr7_3:80725810-80725829 Msa1128850:CDS 50.0%
GGTGGTTCTTCTGTGAGACA+TGG - chr7_3:80726413-80726432 None:intergenic 50.0%
GATGGCAATGGGTACCCTAT+GGG + chr7_3:80726612-80726631 Msa1128850:intron 50.0%
CAATGGGTACCCTATGGGTA+GGG + chr7_3:80726617-80726636 Msa1128850:intron 50.0%
CACTAAAGTTGTTGCCCACG+AGG - chr7_3:80726703-80726722 None:intergenic 50.0%
TGCCCTTCCCCATATCCTAT+GGG + chr7_3:80726721-80726740 Msa1128850:intron 50.0%
TGCCCATAGGATATGGGGAA+GGG - chr7_3:80726726-80726745 None:intergenic 50.0%
!! TAAAGTGCGGGTAATGGGTG+CGG - chr7_3:80726764-80726783 None:intergenic 50.0%
ATGGGTATGGGTACGGGTAA+GGG - chr7_3:80727072-80727091 None:intergenic 50.0%
AATGGGTATGGGTACGGGTA+AGG - chr7_3:80727073-80727092 None:intergenic 50.0%
AACCCCGCTTTCATGGGTAT+GGG - chr7_3:80727125-80727144 None:intergenic 50.0%
AAACCCCGCTTTCATGGGTA+TGG - chr7_3:80727126-80727145 None:intergenic 50.0%
GGGTAAAACCCCGCTTTCAT+GGG - chr7_3:80727131-80727150 None:intergenic 50.0%
AGGGTAAAACCCCGCTTTCA+TGG - chr7_3:80727132-80727151 None:intergenic 50.0%
! GGGTTTTACCCTACCCATTG+TGG + chr7_3:80727140-80727159 Msa1128850:intron 50.0%
ACCAACACCCCAACAAGTCA+GGG - chr7_3:80727400-80727419 None:intergenic 50.0%
! GTCTCTTTTGGTGGAGGTCT+TGG + chr7_3:80727680-80727699 Msa1128850:CDS 50.0%
TGACTTGAGCAACCCTGTTG+TGG - chr7_3:80727751-80727770 None:intergenic 50.0%
TCAAGCTGGTACAGCCTTTG+TGG + chr7_3:80727961-80727980 Msa1128850:CDS 50.0%
! GGTGTCATGCAGGTTAACTC+GGG + chr7_3:80728314-80728333 Msa1128850:intron 50.0%
GTGTCATGCAGGTTAACTCG+GGG + chr7_3:80728315-80728334 Msa1128850:intron 50.0%
! TTCATGTATAGCCTTGGCCG+GGG + chr7_3:80728484-80728503 Msa1128850:CDS 50.0%
!! AAGATACTCGGTGCATACCC+CGG - chr7_3:80728504-80728523 None:intergenic 50.0%
ACTGGGCTTCACACAGAAGA+AGG + chr7_3:80728670-80728689 Msa1128850:CDS 50.0%
ACACAGTCTTACTCCTGCGT+CGG + chr7_3:80728723-80728742 Msa1128850:CDS 50.0%
TATACTGTGTTCCTGCCTCC+TGG + chr7_3:80728862-80728881 Msa1128850:three_prime_UTR 50.0%
ATGACCAGGGTAACACCGAA+TGG - chr7_3:80728914-80728933 None:intergenic 50.0%
TTCCGAGACTTCGTGTGTGA+AGG + chr7_3:80728989-80729008 Msa1128850:three_prime_UTR 50.0%
GTGACAATGCCTCAGCTACA+TGG - chr7_3:80729214-80729233 None:intergenic 50.0%
ACGGAGAAGTCTCTTCAACG+AGG + chr7_3:80729308-80729327 Msa1128850:three_prime_UTR 50.0%
GTAGGTCTCCCATCATCCCT+CGG + chr7_3:80725766-80725785 Msa1128850:CDS 55.0%
TAGGTCTCCCATCATCCCTC+GGG + chr7_3:80725767-80725786 Msa1128850:CDS 55.0%
TAGGTTGCCCGAGGGATGAT+GGG - chr7_3:80725777-80725796 None:intergenic 55.0%
! TTAGGTTGCCCGAGGGATGA+TGG - chr7_3:80725778-80725797 None:intergenic 55.0%
CCGAAACACTGAAGCCCGTT+GGG - chr7_3:80725937-80725956 None:intergenic 55.0%
! CCCAACGGGCTTCAGTGTTT+CGG + chr7_3:80725934-80725953 Msa1128850:CDS 55.0%
TTGTTGGAGGGGTTGCTGCT+TGG + chr7_3:80726237-80726256 Msa1128850:CDS 55.0%
GGATGGCAATGGGTACCCTA+TGG + chr7_3:80726611-80726630 Msa1128850:intron 55.0%
GCAATGGGTACCCTATGGGT+AGG + chr7_3:80726616-80726635 Msa1128850:intron 55.0%
! GTTGTTGCCCACGAGGGTAT+GGG - chr7_3:80726696-80726715 None:intergenic 55.0%
AGTTGTTGCCCACGAGGGTA+TGG - chr7_3:80726697-80726716 None:intergenic 55.0%
GTGCCCTTCCCCATATCCTA+TGG + chr7_3:80726720-80726739 Msa1128850:intron 55.0%
GTGCCCATAGGATATGGGGA+AGG - chr7_3:80726727-80726746 None:intergenic 55.0%
! ATGGGCACTAAGGTGCCCAT+AGG - chr7_3:80726739-80726758 None:intergenic 55.0%
!! AAAGTGCGGGTAATGGGTGC+GGG - chr7_3:80726763-80726782 None:intergenic 55.0%
GCTTTCATGGGTATGGGCGT+GGG - chr7_3:80727119-80727138 None:intergenic 55.0%
CACGCCCATACCCATGAAAG+CGG + chr7_3:80727118-80727137 Msa1128850:intron 55.0%
ACGCCCATACCCATGAAAGC+GGG + chr7_3:80727119-80727138 Msa1128850:intron 55.0%
CAATTGGACCCAAGCCCGAT+GGG - chr7_3:80727182-80727201 None:intergenic 55.0%
CCAACACCCCAACAAGTCAG+GGG - chr7_3:80727399-80727418 None:intergenic 55.0%
GACCAACACCCCAACAAGTC+AGG - chr7_3:80727401-80727420 None:intergenic 55.0%
! TGGTGGAGGTCTTGGTAGCT+TGG + chr7_3:80727688-80727707 Msa1128850:CDS 55.0%
CATGCAGGTTAACTCGGGGA+AGG + chr7_3:80728319-80728338 Msa1128850:intron 55.0%
!! CTCGGGGAAGGTATCAGCTA+CGG + chr7_3:80728331-80728350 Msa1128850:CDS 55.0%
ACTTCCCAGAGACATGGCCA+CGG - chr7_3:80728774-80728793 None:intergenic 55.0%
TTGAACGTGTACCAGGAGGC+AGG - chr7_3:80728876-80728895 None:intergenic 55.0%
ACAGACATGGTCGCATGGCG+TGG + chr7_3:80725661-80725680 Msa1128850:five_prime_UTR 60.0%
CATGGTGTCTGTGTGGGCGT+AGG + chr7_3:80725748-80725767 Msa1128850:CDS 60.0%
GCCGAAACACTGAAGCCCGT+TGG - chr7_3:80725938-80725957 None:intergenic 60.0%
! GAGGGTATGGGTTCGGGTAC+GGG - chr7_3:80726684-80726703 None:intergenic 60.0%
! CGAGGGTATGGGTTCGGGTA+CGG - chr7_3:80726685-80726704 None:intergenic 60.0%
TACCCGAACCCATACCCTCG+TGG + chr7_3:80726685-80726704 Msa1128850:intron 60.0%
ACCCGAACCCATACCCTCGT+GGG + chr7_3:80726686-80726705 Msa1128850:intron 60.0%
! TGCCCACGAGGGTATGGGTT+CGG - chr7_3:80726691-80726710 None:intergenic 60.0%
!! CGGGTAATGGGTGCGGGTAT+GGG - chr7_3:80726757-80726776 None:intergenic 60.0%
! TATATGCGGGTTGCGGGGCT+GGG + chr7_3:80727036-80727055 Msa1128850:intron 60.0%
CGCTTTCATGGGTATGGGCG+TGG - chr7_3:80727120-80727139 None:intergenic 60.0%
CGCCCATACCCATGAAAGCG+GGG + chr7_3:80727120-80727139 Msa1128850:intron 60.0%
GCAATTGGACCCAAGCCCGA+TGG - chr7_3:80727183-80727202 None:intergenic 60.0%
!! CCCCTGACTTGTTGGGGTGT+TGG + chr7_3:80727396-80727415 Msa1128850:intron 60.0%
! ACTCCTGCGTCGGCATGAAG+CGG + chr7_3:80728733-80728752 Msa1128850:CDS 60.0%
CTTGCCGTGGCCATGTCTCT+GGG + chr7_3:80728767-80728786 Msa1128850:CDS 60.0%
GGCGGTGTGTACAAAGCGCA+TGG - chr7_3:80729376-80729395 None:intergenic 60.0%
CGGGCTTCAGTGTTTCGGCG+CGG + chr7_3:80725939-80725958 Msa1128850:CDS 65.0%
GTGTTTCGGCGCGGCTAGAC+AGG + chr7_3:80725948-80725967 Msa1128850:CDS 65.0%
TTCGGCGCGGCTAGACAGGT+TGG + chr7_3:80725952-80725971 Msa1128850:intron 65.0%
! GCCCACGAGGGTATGGGTTC+GGG - chr7_3:80726690-80726709 None:intergenic 65.0%
GGGTGCGGGTATGGGCACTA+AGG - chr7_3:80726749-80726768 None:intergenic 65.0%
!! GCGGGTAATGGGTGCGGGTA+TGG - chr7_3:80726758-80726777 None:intergenic 65.0%
! GTATATGCGGGTTGCGGGGC+TGG + chr7_3:80727035-80727054 Msa1128850:intron 65.0%
ATGGGTATGGGCGTGGGTCC+GGG - chr7_3:80727113-80727132 None:intergenic 65.0%
CATGGGTATGGGCGTGGGTC+CGG - chr7_3:80727114-80727133 None:intergenic 65.0%
TTGCGGGTACCCATCGGGCT+TGG + chr7_3:80727170-80727189 Msa1128850:intron 65.0%
TGCGGGTACCCATCGGGCTT+GGG + chr7_3:80727171-80727190 Msa1128850:intron 65.0%
! TGCGTCGGCATGAAGCGGCT+CGG + chr7_3:80728738-80728757 Msa1128850:CDS 65.0%
! GGCTCGGTCTAAGCTTGCCG+TGG + chr7_3:80728754-80728773 Msa1128850:CDS 65.0%
GCTTGCCGTGGCCATGTCTC+TGG + chr7_3:80728766-80728785 Msa1128850:CDS 65.0%
! CTCGGTGCATACCCCGGCCA+AGG - chr7_3:80728498-80728517 None:intergenic 70.0%
GAGCCGCTTCATGCCGACGC+AGG - chr7_3:80728739-80728758 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 80725540 80729582 80725540 ID=Msa1128850;Name=Msa1128850
chr7_3 mRNA 80725540 80729582 80725540 ID=Msa1128850-mRNA-1;Parent=Msa1128850;Name=Msa1128850-mRNA-1;_AED=0.14;_eAED=0.14;_QI=187|0.83|0.85|1|1|1|7|732|372
chr7_3 exon 80725540 80725969 80725540 ID=Msa1128850-mRNA-1:exon:23259;Parent=Msa1128850-mRNA-1
chr7_3 exon 80726116 80726433 80726116 ID=Msa1128850-mRNA-1:exon:23260;Parent=Msa1128850-mRNA-1
chr7_3 exon 80727680 80727766 80727680 ID=Msa1128850-mRNA-1:exon:23261;Parent=Msa1128850-mRNA-1
chr7_3 exon 80727857 80728003 80727857 ID=Msa1128850-mRNA-1:exon:23262;Parent=Msa1128850-mRNA-1
chr7_3 exon 80728326 80728352 80728326 ID=Msa1128850-mRNA-1:exon:23263;Parent=Msa1128850-mRNA-1
chr7_3 exon 80728470 80728565 80728470 ID=Msa1128850-mRNA-1:exon:23264;Parent=Msa1128850-mRNA-1
chr7_3 exon 80728650 80729582 80728650 ID=Msa1128850-mRNA-1:exon:23265;Parent=Msa1128850-mRNA-1
chr7_3 five_prime_UTR 80725540 80725726 80725540 ID=Msa1128850-mRNA-1:five_prime_utr;Parent=Msa1128850-mRNA-1
chr7_3 CDS 80725727 80725969 80725727 ID=Msa1128850-mRNA-1:cds;Parent=Msa1128850-mRNA-1
chr7_3 CDS 80726116 80726433 80726116 ID=Msa1128850-mRNA-1:cds;Parent=Msa1128850-mRNA-1
chr7_3 CDS 80727680 80727766 80727680 ID=Msa1128850-mRNA-1:cds;Parent=Msa1128850-mRNA-1
chr7_3 CDS 80727857 80728003 80727857 ID=Msa1128850-mRNA-1:cds;Parent=Msa1128850-mRNA-1
chr7_3 CDS 80728326 80728352 80728326 ID=Msa1128850-mRNA-1:cds;Parent=Msa1128850-mRNA-1
chr7_3 CDS 80728470 80728565 80728470 ID=Msa1128850-mRNA-1:cds;Parent=Msa1128850-mRNA-1
chr7_3 CDS 80728650 80728850 80728650 ID=Msa1128850-mRNA-1:cds;Parent=Msa1128850-mRNA-1
chr7_3 three_prime_UTR 80728851 80729582 80728851 ID=Msa1128850-mRNA-1:three_prime_utr;Parent=Msa1128850-mRNA-1
Gene Sequence

>Msa1128850

ATGATTGGTTTGAGTCTGATGCATGGTGTCTGTGTGGGCGTAGGTCTCCCATCATCCCTCGGGCAACCTAAACTTGCAAGGGTGAGGATCCAATGCTCAACCAAGGTTTCTAGCAGCAGACAACAATTGCTTGAAAGTGTAGACAAGGAGCTAACAAAAGGGGATGATAGAGCTGCTCTTGCACTTGTTAAGGATTTACAAGGCAAACCCAACGGGCTTCAGTGTTTCGGCGCGGCTAGACAGGTTCCTCAAAGGCTTTATACATTGGACGAATTGAAGCTAAATGGAATAGAAGCCATGTCTCTTCTATCTCCTGTGGATACAACTCTTGGTTCAATTGAGAGAAATTTGTTGATTGCTGCTATTGTTGGAGGGGTTGCTGCTTGGAATGTCTTTGGAATTTCCCAACAACAAATCTTTTACATATCTTTGGGATTGCTGTTTCTGTGGACTCTGGATTTGGTATTACTACTTGCACCTGGACTCAAATTTACTGCATTCATTCCACTATATGAAACTATGAATGAAATGAAAATGCCATGTCTCACAGAAGAACCACCTGTCTCTTTTGGTGGAGGTCTTGGTAGCTTGGTTGTTGATACAATTGGTCACAAATTCAGTCAGAAATACCACAACAGGGTTGCTCAACATGAAGCTGGCCATTTTTTAATTGCTTATCTGGTTGGAATACTTCCTAAAGGATATACACTTTCTAGTTTGGATGGTCTGATGAAGGAGGGTTCTCTCAATATTCAAGCTGGTACAGCCTTTGTGGATTTTGAGTTTCTCGAAGAAGTTAACTCGGGGAAGGTATCAGCTACGACATTGAACAAATTTTCATGTATAGCCTTGGCCGGGGTATGCACCGAGTATCTTATATATGGATTTTCTGAAGGAGGTTTGGATGACATAAGAAAGTTAGATTCTTTGCTCAACGGACTGGGCTTCACACAGAAGAAGGCAGATTCTCAAGTTAGATGGTCTGTGCTAAACACAGTCTTACTCCTGCGTCGGCATGAAGCGGCTCGGTCTAAGCTTGCCGTGGCCATGTCTCTGGGAAGTTCTGTAGGATCCTGCATTGATATTATAGAGAATTCTATCAATGTTTCAGATCTATAA

Protein sequence

>Msa1128850

MIGLSLMHGVCVGVGLPSSLGQPKLARVRIQCSTKVSSSRQQLLESVDKELTKGDDRAALALVKDLQGKPNGLQCFGAARQVPQRLYTLDELKLNGIEAMSLLSPVDTTLGSIERNLLIAAIVGGVAAWNVFGISQQQIFYISLGLLFLWTLDLVLLLAPGLKFTAFIPLYETMNEMKMPCLTEEPPVSFGGGLGSLVVDTIGHKFSQKYHNRVAQHEAGHFLIAYLVGILPKGYTLSSLDGLMKEGSLNIQAGTAFVDFEFLEEVNSGKVSATTLNKFSCIALAGVCTEYLIYGFSEGGLDDIRKLDSLLNGLGFTQKKADSQVRWSVLNTVLLLRRHEAARSKLAVAMSLGSSVGSCIDIIENSINVSDL*