AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967540 MtrunA17_Chr5g0405451 91.910 445 26 4 1 441 1 439 0.0 782
Msa0967540 MtrunA17_Chr5g0406201 74.730 463 70 8 8 430 6 461 0.0 632
Msa0967540 MtrunA17_Chr2g0303671 46.703 182 96 1 247 427 123 304 5.49e-53 179
Msa0967540 MtrunA17_Chr5g0418551 33.088 136 91 0 272 407 91 226 1.23e-16 79.3
Msa0967540 MtrunA17_Chr5g0418551 32.353 136 89 1 275 407 58 193 1.97e-15 75.9
Msa0967540 MtrunA17_Chr5g0409271 32.117 137 92 1 275 410 15 151 8.97e-15 74.3
Msa0967540 MtrunA17_Chr4g0049351 29.825 171 112 3 247 416 40 203 8.08e-13 70.5
Msa0967540 MtrunA17_Chr5g0434371 36.364 154 92 2 274 427 591 738 3.48e-12 68.6
Msa0967540 MtrunA17_Chr7g0221441 38.095 84 52 0 336 419 739 822 7.80e-12 67.4
Msa0967540 MtrunA17_Chr6g0461061 28.649 185 130 2 256 439 195 378 8.92e-12 67.0
Msa0967540 MtrunA17_Chr4g0063141 33.088 136 88 2 275 409 555 688 8.98e-12 67.4
Msa0967540 MtrunA17_Chr7g0274241 27.632 152 108 2 263 414 114 263 4.39e-11 64.7
Msa0967540 MtrunA17_Chr3g0127131 33.000 100 65 1 313 410 244 343 6.19e-11 63.5
Msa0967540 MtrunA17_Chr3g0138141 27.642 246 136 6 220 437 62 293 7.08e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967540 AT5G66055.1 52.482 423 187 6 23 435 7 425 1.09e-148 430
Msa0967540 AT5G66055.2 49.300 357 168 5 23 370 7 359 7.45e-112 333
Msa0967540 AT5G40160.1 48.352 182 93 1 247 427 127 308 9.09e-54 182
Msa0967540 AT5G40160.2 48.077 156 80 1 247 401 127 282 1.13e-44 157
Msa0967540 AT4G27780.1 40.506 79 47 0 332 410 261 339 8.88e-13 69.7
Msa0967540 AT2G25600.1 32.857 140 92 1 275 414 581 718 1.07e-12 70.9
Msa0967540 AT2G03430.1 30.435 138 96 0 270 407 82 219 3.62e-12 66.6
Msa0967540 AT4G19150.1 26.708 161 113 2 275 434 20 176 4.07e-12 66.2
Msa0967540 AT2G14255.1 31.333 150 100 2 263 409 83 232 7.92e-12 67.8
Msa0967540 AT5G53470.1 36.709 79 50 0 332 410 246 324 1.28e-11 66.2
Msa0967540 AT5G13300.1 33.663 101 65 1 326 426 718 816 2.65e-11 66.2

Find 90 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTATTTGTAGGATAAA+TGG 0.153410 6_3:+97303482 Msa0967540:intron
TTCTTCTTTGAAATTGAAAT+TGG 0.200442 6_3:-97301599 None:intergenic
AATCCTAGATGGGCTGTTTA+TGG 0.219355 6_3:+97301926 Msa0967540:CDS
CAGTTGAAGCCTTTGGTTCT+TGG 0.229120 6_3:+97301830 Msa0967540:CDS
AGAATCTTGTTCCTGATAAA+TGG 0.230329 6_3:+97301645 Msa0967540:CDS
TGAACTTCTTTCCATTTATC+AGG 0.246691 6_3:-97301656 None:intergenic
GCTCTTTACAAAGCGGTAAT+TGG 0.259504 6_3:+97303693 Msa0967540:CDS
GTTGATTCCTTCGAGGGATA+TGG 0.264643 6_3:+97301766 Msa0967540:CDS
TTTGAAATTGAAATTGGTTT+TGG 0.269853 6_3:-97301593 None:intergenic
GTGAAGCTTCTGCTGATTAA+AGG 0.274738 6_3:+97304506 Msa0967540:CDS
GGCTTATAAAGAAGCTAAAT+TGG 0.277637 6_3:+97301805 Msa0967540:CDS
AATATGGAAACTTTAGCTTT+AGG 0.286592 6_3:+97305896 Msa0967540:three_prime_UTR
TATGGATTTGAATGAGTATA+AGG 0.293852 6_3:+97301784 Msa0967540:CDS
GTCTGTCGGGAGCGTCTATA+AGG 0.356780 6_3:-97305771 None:intergenic
GACTCTGCTGCTATGAAAAC+TGG 0.356814 6_3:+97301995 Msa0967540:CDS
GCAAGCAGCTCTTCAGAATA+TGG 0.356818 6_3:+97305880 Msa0967540:three_prime_UTR
ATTGGCTCAGTTGAAGCCTT+TGG 0.368198 6_3:+97301823 Msa0967540:CDS
TGATGTTGATATTAATGTTA+TGG 0.368619 6_3:+97303567 Msa0967540:CDS
CAATGTGGATATAAATCTTC+AGG 0.373575 6_3:+97304336 Msa0967540:CDS
AAGAAGAGTGTGTGGGGTTG+TGG 0.374765 6_3:-97301350 None:intergenic
TCTCAAGAGACTGTTGGTTA+TGG 0.380991 6_3:-97303727 None:intergenic
TGATATTAATGTTATGGATA+AGG 0.387981 6_3:+97303573 Msa0967540:CDS
ATCCTAGATGGGCTGTTTAT+GGG 0.393025 6_3:+97301927 Msa0967540:CDS
TAGTGCCTAGGAATCCTAGA+TGG 0.397952 6_3:+97301915 Msa0967540:CDS
ACAAGAGTACTTTAATTGTT+CGG 0.397986 6_3:-97304309 None:intergenic
TTCAATCCATAACTAGTTGC+GGG 0.402389 6_3:-97301268 None:intergenic
CTCACATTATCTTGCACAAA+CGG 0.408366 6_3:-97303762 None:intergenic
TCAAAACCCGCAACTAGTTA+TGG 0.408808 6_3:+97301262 None:intergenic
AAATGTATTCAAAATATGAT+AGG 0.418620 6_3:+97305943 Msa0967540:three_prime_UTR
GAAGCCTTTGGTTCTTGGTA+AGG 0.419470 6_3:+97301835 Msa0967540:CDS
AGATGGGCTGTTTATGGGAG+AGG 0.423749 6_3:+97301932 Msa0967540:CDS
TTCTTCTTATCCCCGTCTGT+CGG 0.435105 6_3:-97305785 None:intergenic
TTGCTGTGTCTTAGGATGGC+TGG 0.440960 6_3:+97304441 Msa0967540:intron
CGGAGACTGTCTTGTCTTCG+AGG 0.443191 6_3:+97301508 Msa0967540:CDS
TCTTCTTATCCCCGTCTGTC+GGG 0.451834 6_3:-97305784 None:intergenic
GTCGTCCTAGGTTGTTTACC+AGG 0.463875 6_3:+97303129 Msa0967540:CDS
ACGAGGTTGTTGTCGGAAGT+TGG 0.464298 6_3:-97301557 None:intergenic
AAAGTTATGAAGAAGAAAAG+AGG 0.482187 6_3:+97301743 Msa0967540:CDS
ACAGCCCATCTAGGATTCCT+AGG 0.499470 6_3:-97301920 None:intergenic
TTTATCAGGAACAAGATTCT+CGG 0.500203 6_3:-97301642 None:intergenic
GTTGTTTACGAGGTTGTTGT+CGG 0.500244 6_3:-97301564 None:intergenic
CTCGACCTTTGCCTTTACTC+TGG 0.500612 6_3:+97305705 Msa0967540:CDS
CTCCCATAAACAGCCCATCT+AGG 0.507590 6_3:-97301929 None:intergenic
GAAGATGATGAAGAAGAAGA+AGG 0.510543 6_3:+97301872 Msa0967540:CDS
GTTGTTTACCAGGGAGGAGA+GGG 0.513400 6_3:+97303139 Msa0967540:CDS
CTTCGTAGTTGTTGTCATGT+TGG 0.515970 6_3:-97301475 None:intergenic
AAGTTATGAAGAAGAAAAGA+GGG 0.517219 6_3:+97301744 Msa0967540:CDS
AGGTGGGTTGAGTGATGAGA+GGG 0.518172 6_3:+97301892 Msa0967540:CDS
GAAGTAGCAACTGACAAGTC+TGG 0.525281 6_3:-97303182 None:intergenic
GATGATGAAGAAGAAGAAGG+TGG 0.525802 6_3:+97301875 Msa0967540:CDS
CGAGTTTCTCAAGAGACTGT+TGG 0.526379 6_3:-97303733 None:intergenic
ATGGAGAGAAGAAGAGTGTG+TGG 0.526930 6_3:-97301358 None:intergenic
TGGAGAGAAGAAGAGTGTGT+GGG 0.527588 6_3:-97301357 None:intergenic
GACTGTCTTGTCTTCGAGGA+AGG 0.528284 6_3:+97301512 Msa0967540:CDS
TGTTTATGGGAGAGGTTTCG+AGG 0.529560 6_3:+97301940 Msa0967540:CDS
ATTCAATCCATAACTAGTTG+CGG 0.541413 6_3:-97301269 None:intergenic
TATAGACGCTCCCGACAGAC+GGG 0.545707 6_3:+97305774 Msa0967540:CDS
AAAGAGGGTTGATTCCTTCG+AGG 0.548485 6_3:+97301759 Msa0967540:CDS
CAACAAATCCCTCTCCTCCC+TGG 0.550164 6_3:-97303147 None:intergenic
GTCTGAACAGCAAGATGTAA+TGG 0.552014 6_3:-97304467 None:intergenic
AAGAGGGTTGATTCCTTCGA+GGG 0.552504 6_3:+97301760 Msa0967540:CDS
ATGATGAAGAAGAAGAAGGT+GGG 0.553208 6_3:+97301876 Msa0967540:CDS
AAGGTGGGTTGAGTGATGAG+AGG 0.562680 6_3:+97301891 Msa0967540:CDS
GAGTAAAGGCAAAGGTCGAG+TGG 0.584489 6_3:-97305702 None:intergenic
TTGTACAGCATAGTGAATCA+AGG 0.589301 6_3:-97304275 None:intergenic
AGTGCCTAGGAATCCTAGAT+GGG 0.592539 6_3:+97301916 Msa0967540:CDS
AGATTGAAACTTGCGAGGTG+TGG 0.593440 6_3:-97301402 None:intergenic
CAACAGTCTCTTGAGAAACT+CGG 0.594452 6_3:+97303734 Msa0967540:CDS
TTATAGACGCTCCCGACAGA+CGG 0.598131 6_3:+97305773 Msa0967540:CDS
GGTTGTTTACCAGGGAGGAG+AGG 0.600499 6_3:+97303138 Msa0967540:CDS
TCGTCCTAGGTTGTTTACCA+GGG 0.600545 6_3:+97303130 Msa0967540:CDS
AGTACTCTTGTTGTACAATG+TGG 0.602365 6_3:+97304321 Msa0967540:CDS
GAAACTTTAGCTTTAGGACA+AGG 0.609493 6_3:+97305902 Msa0967540:three_prime_UTR
TTCAAATCCATATCCCTCGA+AGG 0.611215 6_3:-97301773 None:intergenic
AATTACCGCTTTGTAAAGAG+CGG 0.611856 6_3:-97303691 None:intergenic
TAAACATAACGAAGAAAGAA+CGG 0.615305 6_3:+97301687 Msa0967540:CDS
GTGATGAGAGGGTAGTGCCT+AGG 0.618143 6_3:+97301903 Msa0967540:CDS
TGAAAAGATTGAAACTTGCG+AGG 0.619228 6_3:-97301407 None:intergenic
CTTGCAGCAAAAGTGTGCAA+AGG 0.619949 6_3:-97303508 None:intergenic
TTGTGGATTACGAACAAGTG+TGG 0.636734 6_3:-97301333 None:intergenic
TCCTAGGTTGTTTACCAGGG+AGG 0.641807 6_3:+97303133 Msa0967540:CDS
GGAGAGAAGAAGAGTGTGTG+GGG 0.642297 6_3:-97301356 None:intergenic
AACTACGAAGAACACATCAT+CGG 0.651971 6_3:+97301488 Msa0967540:CDS
TCCTCCCTGGTAAACAACCT+AGG 0.653160 6_3:-97303134 None:intergenic
AAAACCTTACCAAGAACCAA+AGG 0.660134 6_3:-97301839 None:intergenic
TTTGACCAGAGTAAAGGCAA+AGG 0.667685 6_3:-97305710 None:intergenic
ATAGACGCTCCCGACAGACG+GGG 0.691778 6_3:+97305775 Msa0967540:CDS
TTTGACCGCTCTTTACAAAG+CGG 0.710243 6_3:+97303686 Msa0967540:CDS
TCTGCTGCTATGAAAACTGG+AGG 0.737144 6_3:+97301998 Msa0967540:CDS
TACAGCATAGTGAATCAAGG+TGG 0.739803 6_3:-97304272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTTATAAAATAGAAG+CGG + chr6_3:97304873-97304892 Msa0967540:intron 10.0%
!!! AAAATTCTACTTTTTTTTTT+TGG - chr6_3:97305993-97306012 None:intergenic 10.0%
!! ACTATATGTTAATAGATTAA+GGG - chr6_3:97304171-97304190 None:intergenic 15.0%
!! AACTATATGTTAATAGATTA+AGG - chr6_3:97304172-97304191 None:intergenic 15.0%
!! TTACATTGATAGATTAATAT+AGG - chr6_3:97304575-97304594 None:intergenic 15.0%
!! ATAATTTATAAAATAGAAGC+GGG + chr6_3:97304874-97304893 Msa0967540:intron 15.0%
!!! AAATAAAACTTTTGATGATT+TGG + chr6_3:97305807-97305826 Msa0967540:exon 15.0%
!! AAATGTATTCAAAATATGAT+AGG + chr6_3:97305943-97305962 Msa0967540:three_prime_UTR 15.0%
!!! AATTTTTTCATAAGAAAAGA+AGG + chr6_3:97306007-97306026 Msa0967540:three_prime_UTR 15.0%
!!! TTTGAAATTGAAATTGGTTT+TGG - chr6_3:97301596-97301615 None:intergenic 20.0%
!!! TTCTTCTTTGAAATTGAAAT+TGG - chr6_3:97301602-97301621 None:intergenic 20.0%
!!! TTTGTATTTACAATCTGTTT+TGG + chr6_3:97302024-97302043 Msa0967540:intron 20.0%
!! AAAACTAAAAGTTGTTACAT+AGG - chr6_3:97302086-97302105 None:intergenic 20.0%
!!! TATGGACATTTTGAAAAATA+AGG + chr6_3:97302577-97302596 Msa0967540:intron 20.0%
!!! ATGGACATTTTGAAAAATAA+GGG + chr6_3:97302578-97302597 Msa0967540:intron 20.0%
!!! TGTTGGTTAAAACAAATTTA+TGG + chr6_3:97302633-97302652 Msa0967540:intron 20.0%
!!! TTATATCTCAACTTTTTCAT+AGG - chr6_3:97302711-97302730 None:intergenic 20.0%
!! ATGAAAAAGTTGAGATATAA+AGG + chr6_3:97302711-97302730 Msa0967540:intron 20.0%
!! TAACAGTACAAAATATAATG+AGG - chr6_3:97303259-97303278 None:intergenic 20.0%
!!! ATTATATTTTGTACTGTTAC+CGG + chr6_3:97303260-97303279 Msa0967540:intron 20.0%
!!! CTCTATATTTATGTTTTCAA+TGG + chr6_3:97303453-97303472 Msa0967540:intron 20.0%
!! TGATGTTGATATTAATGTTA+TGG + chr6_3:97303567-97303586 Msa0967540:CDS 20.0%
!! TGATATTAATGTTATGGATA+AGG + chr6_3:97303573-97303592 Msa0967540:CDS 20.0%
!! CATGAATACTAATTTATACA+CGG + chr6_3:97303598-97303617 Msa0967540:intron 20.0%
!! AAACACAATAGTTTAAATAG+AGG - chr6_3:97303644-97303663 None:intergenic 20.0%
!!! TGTTTTGTTTTACTTTTTCA+AGG + chr6_3:97303659-97303678 Msa0967540:intron 20.0%
!! TGATCAGAAATTAAAAAACA+AGG + chr6_3:97304532-97304551 Msa0967540:CDS 20.0%
!! AAAAAGGGAAAAAATACAAT+GGG - chr6_3:97304697-97304716 None:intergenic 20.0%
!! AAAAAAGGGAAAAAATACAA+TGG - chr6_3:97304698-97304717 None:intergenic 20.0%
!!! AATTCTTTAGAAAATAGAAG+TGG + chr6_3:97305006-97305025 Msa0967540:intron 20.0%
!!! AAAACTTTCAACTGTTATTT+AGG + chr6_3:97305235-97305254 Msa0967540:intron 20.0%
!!! TTTTTTTTTTATCCAAGCAT+GGG - chr6_3:97305315-97305334 None:intergenic 20.0%
!!! TTTTTTTTTTTATCCAAGCA+TGG - chr6_3:97305316-97305335 None:intergenic 20.0%
!! AACTAAATATTCATCAATCA+CGG - chr6_3:97305453-97305472 None:intergenic 20.0%
!!! ATATCATAATATTTTGTCTG+TGG + chr6_3:97305536-97305555 Msa0967540:intron 20.0%
!! AAATATCACTGTAAAAGAAA+TGG - chr6_3:97305641-97305660 None:intergenic 20.0%
! TAAACATAACGAAGAAAGAA+CGG + chr6_3:97301687-97301706 Msa0967540:CDS 25.0%
! AAAGTTATGAAGAAGAAAAG+AGG + chr6_3:97301743-97301762 Msa0967540:CDS 25.0%
! AAGTTATGAAGAAGAAAAGA+GGG + chr6_3:97301744-97301763 Msa0967540:CDS 25.0%
! TATGGATTTGAATGAGTATA+AGG + chr6_3:97301784-97301803 Msa0967540:CDS 25.0%
!!! TATTTTTGTTAATGCTGTTG+AGG + chr6_3:97302050-97302069 Msa0967540:intron 25.0%
! TTGTATTGCTCTTATTGTTT+AGG + chr6_3:97302355-97302374 Msa0967540:intron 25.0%
! TGTATTGCTCTTATTGTTTA+GGG + chr6_3:97302356-97302375 Msa0967540:intron 25.0%
!!! TATGCTTGTTAGATAACTTT+TGG + chr6_3:97302502-97302521 Msa0967540:intron 25.0%
!!! TTGGATTTGCTTTTGATTTA+TGG + chr6_3:97302605-97302624 Msa0967540:intron 25.0%
!!! TGGATTTGCTTTTGATTTAT+GGG + chr6_3:97302606-97302625 Msa0967540:intron 25.0%
! GAAATTTGATTGTGATGAAA+TGG + chr6_3:97302976-97302995 Msa0967540:intron 25.0%
!! TGGATCATTTTATTCATTGA+TGG + chr6_3:97302996-97303015 Msa0967540:intron 25.0%
!! TATTCATTGATGGTTAAATC+CGG + chr6_3:97303006-97303025 Msa0967540:intron 25.0%
! TTCTCATTGTTTGCAATATA+TGG + chr6_3:97303056-97303075 Msa0967540:intron 25.0%
! TTACTTCAACATCAAAACAA+AGG - chr6_3:97303308-97303327 None:intergenic 25.0%
!!! TGTTGCATTTTTTTCAATGT+TGG + chr6_3:97303370-97303389 Msa0967540:intron 25.0%
! CTCATTATTTGTAGGATAAA+TGG + chr6_3:97303482-97303501 Msa0967540:intron 25.0%
!!! TACTTTTAGAATCTTTGTTG+CGG + chr6_3:97303542-97303561 Msa0967540:CDS 25.0%
!!! TTGTTTTACTTTTTCAAGGA+TGG + chr6_3:97303663-97303682 Msa0967540:intron 25.0%
! GTAAGAAAATCAACAGATAA+AGG - chr6_3:97303833-97303852 None:intergenic 25.0%
! AATATGCTGAAAACAACTTA+TGG + chr6_3:97304053-97304072 Msa0967540:intron 25.0%
!!! ACAAGAGTACTTTAATTGTT+CGG - chr6_3:97304312-97304331 None:intergenic 25.0%
!! TGAATATAGATGCTTTTAAC+TGG + chr6_3:97304624-97304643 Msa0967540:intron 25.0%
! TCAGCCTTTCAAAAAAAAAA+AGG + chr6_3:97304765-97304784 Msa0967540:intron 25.0%
! CAGCCTTTCAAAAAAAAAAA+GGG + chr6_3:97304766-97304785 Msa0967540:intron 25.0%
!!! TGACCCTTTTTTTTTTTGAA+AGG - chr6_3:97304772-97304791 None:intergenic 25.0%
! TCAAAAAAAAAAAGGGTCAT+TGG + chr6_3:97304773-97304792 Msa0967540:intron 25.0%
!! TGAATATAGGTGCTTTTAAT+GGG + chr6_3:97304898-97304917 Msa0967540:intron 25.0%
!! ACATGTATTCTTTAGAAAAC+AGG + chr6_3:97305070-97305089 Msa0967540:intron 25.0%
! CTAAGTCATTAAAAACCTAT+CGG + chr6_3:97305202-97305221 Msa0967540:intron 25.0%
!!! AATATGGAAACTTTAGCTTT+AGG + chr6_3:97305896-97305915 Msa0967540:three_prime_UTR 25.0%
ATTCAATCCATAACTAGTTG+CGG - chr6_3:97301272-97301291 None:intergenic 30.0%
!!! TTGGTTTTTTGTTGTTTACG+AGG - chr6_3:97301577-97301596 None:intergenic 30.0%
AAAGAAGAAAAAGAAGACAG+TGG + chr6_3:97301613-97301632 Msa0967540:CDS 30.0%
TTTATCAGGAACAAGATTCT+CGG - chr6_3:97301645-97301664 None:intergenic 30.0%
AGAATCTTGTTCCTGATAAA+TGG + chr6_3:97301645-97301664 Msa0967540:CDS 30.0%
TGAACTTCTTTCCATTTATC+AGG - chr6_3:97301659-97301678 None:intergenic 30.0%
GGCTTATAAAGAAGCTAAAT+TGG + chr6_3:97301805-97301824 Msa0967540:CDS 30.0%
CAAACACATGTATTTACGTT+TGG + chr6_3:97302151-97302170 Msa0967540:intron 30.0%
TGACACAATAATCTATGAAG+CGG - chr6_3:97302226-97302245 None:intergenic 30.0%
!! TATGAAATGTATTGGTGTCA+GGG + chr6_3:97302250-97302269 Msa0967540:intron 30.0%
!! GACATTTTGAAAAATAAGGG+TGG + chr6_3:97302581-97302600 Msa0967540:intron 30.0%
TTTGAAAAATAAGGGTGGTT+TGG + chr6_3:97302586-97302605 Msa0967540:intron 30.0%
! TCTCTTCAGATAAGTGTTTT+TGG + chr6_3:97302805-97302824 Msa0967540:intron 30.0%
TTGGAGAAGTTTATCCAAAA+TGG + chr6_3:97302824-97302843 Msa0967540:intron 30.0%
ATCCAAAATGGCTCTTAAAT+TGG + chr6_3:97302836-97302855 Msa0967540:intron 30.0%
TTTGTTTATATTGCCATCCT+AGG - chr6_3:97302956-97302975 None:intergenic 30.0%
! ATTCATTGATGGTTAAATCC+GGG + chr6_3:97303007-97303026 Msa0967540:intron 30.0%
GCATAAAATGAATATCTTCC+CGG - chr6_3:97303028-97303047 None:intergenic 30.0%
! TCTTTCATGCTTTTGTGTAT+AGG + chr6_3:97303107-97303126 Msa0967540:intron 30.0%
!!! ACTAGAGAGTTCTTATTTTC+CGG - chr6_3:97303282-97303301 None:intergenic 30.0%
! TGGAATCATAATAGAAGTGT+AGG + chr6_3:97303390-97303409 Msa0967540:intron 30.0%
! GGAATCATAATAGAAGTGTA+GGG + chr6_3:97303391-97303410 Msa0967540:intron 30.0%
! GAATCATAATAGAAGTGTAG+GGG + chr6_3:97303392-97303411 Msa0967540:intron 30.0%
! ATTCACTTGTTTGTTACCTT+CGG + chr6_3:97303422-97303441 Msa0967540:intron 30.0%
ATATAGAGATTACTTACCGA+AGG - chr6_3:97303441-97303460 None:intergenic 30.0%
GGCTAATACTCATTATTTGT+AGG + chr6_3:97303474-97303493 Msa0967540:intron 30.0%
TGATAACAATGATGAATTCC+CGG - chr6_3:97303889-97303908 None:intergenic 30.0%
! TAATAGATTAAGGGCATGTT+TGG - chr6_3:97304162-97304181 None:intergenic 30.0%
TTATATCCTTAGTTACCTGT+TGG + chr6_3:97304193-97304212 Msa0967540:intron 30.0%
AAGCAAATGCATAGAATATC+AGG - chr6_3:97304222-97304241 None:intergenic 30.0%
CAATGTGGATATAAATCTTC+AGG + chr6_3:97304336-97304355 Msa0967540:CDS 30.0%
GAGGTAGAAAAGCTAATTAT+TGG - chr6_3:97304382-97304401 None:intergenic 30.0%
! TGAATTTTGTTCTCAAACAG+TGG - chr6_3:97304420-97304439 None:intergenic 30.0%
!! AAATTCATTTGCTGTGTCTT+AGG + chr6_3:97304433-97304452 Msa0967540:intron 30.0%
AAAAACTCGCGGATAAAAAA+GGG - chr6_3:97304712-97304731 None:intergenic 30.0%
AAAAAACTCGCGGATAAAAA+AGG - chr6_3:97304713-97304732 None:intergenic 30.0%
! CTGAATATAGGTGCTTTTAA+TGG + chr6_3:97304897-97304916 Msa0967540:intron 30.0%
TTTCATCTAAATCACCTAAC+TGG - chr6_3:97305126-97305145 None:intergenic 30.0%
AGTTAGGTGATTTAGATGAA+AGG + chr6_3:97305125-97305144 Msa0967540:intron 30.0%
! CGATAGGTTTTTAATGACTT+AGG - chr6_3:97305204-97305223 None:intergenic 30.0%
!! AGGCTTGATTGAATTTGTTT+TGG + chr6_3:97305425-97305444 Msa0967540:intron 30.0%
!! ATTTGTCTTTTGTTTGTCTC+AGG + chr6_3:97305668-97305687 Msa0967540:intron 30.0%
TTCAATCCATAACTAGTTGC+GGG - chr6_3:97301271-97301290 None:intergenic 35.0%
TGGAAGAAGAAGAAGAAGAA+GGG - chr6_3:97301385-97301404 None:intergenic 35.0%
TGAAAAGATTGAAACTTGCG+AGG - chr6_3:97301410-97301429 None:intergenic 35.0%
! AGAGAATTTTGTGGAAGTTG+CGG - chr6_3:97301445-97301464 None:intergenic 35.0%
! GTGATGAAGAGAGAATTTTG+TGG - chr6_3:97301454-97301473 None:intergenic 35.0%
AACTACGAAGAACACATCAT+CGG + chr6_3:97301488-97301507 Msa0967540:CDS 35.0%
TTGTCGGAAGTTGGAAAAAT+GGG - chr6_3:97301551-97301570 None:intergenic 35.0%
AAAACCTTACCAAGAACCAA+AGG - chr6_3:97301842-97301861 None:intergenic 35.0%
GAAGATGATGAAGAAGAAGA+AGG + chr6_3:97301872-97301891 Msa0967540:CDS 35.0%
ATGATGAAGAAGAAGAAGGT+GGG + chr6_3:97301876-97301895 Msa0967540:CDS 35.0%
!!! AGTTTTAGATTGAACGTGTC+AGG + chr6_3:97302100-97302119 Msa0967540:intron 35.0%
GCTTCATAGATTATTGTGTC+AGG + chr6_3:97302225-97302244 Msa0967540:intron 35.0%
GTCAGGTGTATGAAATGTAT+TGG + chr6_3:97302242-97302261 Msa0967540:intron 35.0%
! GTATGAAATGTATTGGTGTC+AGG + chr6_3:97302249-97302268 Msa0967540:intron 35.0%
TCAGGGTGTATGAAATGTAT+TGG + chr6_3:97302267-97302286 Msa0967540:intron 35.0%
CACATACATGTAGTTACCTT+TGG + chr6_3:97302297-97302316 Msa0967540:intron 35.0%
CAAGCACATGTAGTTATGTT+TGG + chr6_3:97302416-97302435 Msa0967540:intron 35.0%
GTAGTGAAAATCAACTTCCT+TGG + chr6_3:97302546-97302565 Msa0967540:intron 35.0%
! TTTGATTTATGGGAGCTTGT+TGG + chr6_3:97302616-97302635 Msa0967540:intron 35.0%
! CACCAATTTAAGAGCCATTT+TGG - chr6_3:97302841-97302860 None:intergenic 35.0%
GTTGTATATTGCCATCCATT+AGG - chr6_3:97302884-97302903 None:intergenic 35.0%
TTCAGTAAGTATTCCATGTC+TGG + chr6_3:97303202-97303221 Msa0967540:intron 35.0%
! TAATAGAAGTGTAGGGGAAA+AGG + chr6_3:97303398-97303417 Msa0967540:intron 35.0%
ACACGGAAGATTATAATGTG+TGG + chr6_3:97303615-97303634 Msa0967540:intron 35.0%
AATTACCGCTTTGTAAAGAG+CGG - chr6_3:97303694-97303713 None:intergenic 35.0%
CTCACATTATCTTGCACAAA+CGG - chr6_3:97303765-97303784 None:intergenic 35.0%
! CTGTTTTCATAAGCTATCCT+GGG + chr6_3:97304020-97304039 Msa0967540:intron 35.0%
TAGAATATCAGGATACCAAC+AGG - chr6_3:97304211-97304230 None:intergenic 35.0%
!! TTGCTTTGTTGTTTATGTGC+TGG + chr6_3:97304236-97304255 Msa0967540:intron 35.0%
TTGTACAGCATAGTGAATCA+AGG - chr6_3:97304278-97304297 None:intergenic 35.0%
! AGTACTCTTGTTGTACAATG+TGG + chr6_3:97304321-97304340 Msa0967540:CDS 35.0%
! TTCTACCTCTTACTCTTTTG+TGG + chr6_3:97304393-97304412 Msa0967540:intron 35.0%
ACCTTGTGTGTTAGATAATG+TGG + chr6_3:97304599-97304618 Msa0967540:intron 35.0%
CCTTGTGTGTTAGATAATGT+GGG + chr6_3:97304600-97304619 Msa0967540:intron 35.0%
!! AGATGCTTTTAACTGGTCAT+TGG + chr6_3:97304631-97304650 Msa0967540:intron 35.0%
!! GATGCTTTTAACTGGTCATT+GGG + chr6_3:97304632-97304651 Msa0967540:intron 35.0%
ACAAACATTCATCATGACAC+TGG + chr6_3:97304835-97304854 Msa0967540:intron 35.0%
GGTAAATTATCAGTTGTCAC+TGG + chr6_3:97304926-97304945 Msa0967540:intron 35.0%
TTAAATGTAACCTCGTGTGT+TGG + chr6_3:97305029-97305048 Msa0967540:intron 35.0%
! AATCACCTAACTGGTTCTTA+AGG - chr6_3:97305117-97305136 None:intergenic 35.0%
! GTTTTTCTTCAACAACCGAT+AGG - chr6_3:97305220-97305239 None:intergenic 35.0%
ATTGACTAATCAACGTGTCA+CGG - chr6_3:97305375-97305394 None:intergenic 35.0%
AGCAGTAAGCAGATTAATAC+TGG + chr6_3:97305615-97305634 Msa0967540:intron 35.0%
!! TGACATTTTGACCAGAGTAA+AGG - chr6_3:97305719-97305738 None:intergenic 35.0%
!! GAAACTTTAGCTTTAGGACA+AGG + chr6_3:97305902-97305921 Msa0967540:three_prime_UTR 35.0%
! TTGTGGATTACGAACAAGTG+TGG - chr6_3:97301336-97301355 None:intergenic 40.0%
GAAGAAGAAGAAGAAGGGAA+TGG - chr6_3:97301380-97301399 None:intergenic 40.0%
GTGGAAGAAGAAGAAGAAGA+AGG - chr6_3:97301386-97301405 None:intergenic 40.0%
CTTCGTAGTTGTTGTCATGT+TGG - chr6_3:97301478-97301497 None:intergenic 40.0%
TGTCGGAAGTTGGAAAAATG+GGG - chr6_3:97301550-97301569 None:intergenic 40.0%
GTTGTCGGAAGTTGGAAAAA+TGG - chr6_3:97301552-97301571 None:intergenic 40.0%
GTTGTTTACGAGGTTGTTGT+CGG - chr6_3:97301567-97301586 None:intergenic 40.0%
TTCAAATCCATATCCCTCGA+AGG - chr6_3:97301776-97301795 None:intergenic 40.0%
GATGATGAAGAAGAAGAAGG+TGG + chr6_3:97301875-97301894 Msa0967540:CDS 40.0%
!! AATCCTAGATGGGCTGTTTA+TGG + chr6_3:97301926-97301945 Msa0967540:CDS 40.0%
!! ATCCTAGATGGGCTGTTTAT+GGG + chr6_3:97301927-97301946 Msa0967540:CDS 40.0%
CAATGACACGTAGATACCAA+AGG - chr6_3:97302316-97302335 None:intergenic 40.0%
CTATGTGTCAGTGTCATATC+CGG + chr6_3:97302442-97302461 Msa0967540:intron 40.0%
AGCAACACAGACACATATAC+CGG - chr6_3:97302464-97302483 None:intergenic 40.0%
!! ACTTCCTTGGTGATGATGTA+TGG + chr6_3:97302559-97302578 Msa0967540:intron 40.0%
ATGTCCATACATCATCACCA+AGG - chr6_3:97302566-97302585 None:intergenic 40.0%
TCACAACCTTTGGTACCTAA+TGG + chr6_3:97302866-97302885 Msa0967540:intron 40.0%
AACCTTTGGTACCTAATGGA+TGG + chr6_3:97302870-97302889 Msa0967540:intron 40.0%
GCTACATAAACAACCTAGGA+TGG + chr6_3:97302940-97302959 Msa0967540:intron 40.0%
TTGCAAACAATGAGAAGCAG+CGG - chr6_3:97303052-97303071 None:intergenic 40.0%
! TTTTGTGTATAGGTCGTCCT+AGG + chr6_3:97303117-97303136 Msa0967540:intron 40.0%
TTACTACGCAACATCAACGA+TGG - chr6_3:97303340-97303359 None:intergenic 40.0%
TTTGACCGCTCTTTACAAAG+CGG + chr6_3:97303686-97303705 Msa0967540:CDS 40.0%
GCTCTTTACAAAGCGGTAAT+TGG + chr6_3:97303693-97303712 Msa0967540:CDS 40.0%
! TCTCAAGAGACTGTTGGTTA+TGG - chr6_3:97303730-97303749 None:intergenic 40.0%
CAACAGTCTCTTGAGAAACT+CGG + chr6_3:97303734-97303753 Msa0967540:CDS 40.0%
!! GCTGTTTTCATAAGCTATCC+TGG + chr6_3:97304019-97304038 Msa0967540:intron 40.0%
AGACTGTTCAGAAGAGCTTA+TGG - chr6_3:97304098-97304117 None:intergenic 40.0%
AGGATACCAACAGGTAACTA+AGG - chr6_3:97304202-97304221 None:intergenic 40.0%
GTTGTTTATGTGCTGGAAAC+AGG + chr6_3:97304243-97304262 Msa0967540:intron 40.0%
TTTATGTGCTGGAAACAGGA+TGG + chr6_3:97304247-97304266 Msa0967540:intron 40.0%
TTATGTGCTGGAAACAGGAT+GGG + chr6_3:97304248-97304267 Msa0967540:intron 40.0%
TACAGCATAGTGAATCAAGG+TGG - chr6_3:97304275-97304294 None:intergenic 40.0%
!! TCATTTGCTGTGTCTTAGGA+TGG + chr6_3:97304437-97304456 Msa0967540:intron 40.0%
GTCTGAACAGCAAGATGTAA+TGG - chr6_3:97304470-97304489 None:intergenic 40.0%
! GTGAAGCTTCTGCTGATTAA+AGG + chr6_3:97304506-97304525 Msa0967540:CDS 40.0%
CCCACATTATCTAACACACA+AGG - chr6_3:97304603-97304622 None:intergenic 40.0%
!!! ACTGGTCATTGGGTTTTTTG+TGG + chr6_3:97304642-97304661 Msa0967540:intron 40.0%
!!! CTGGTCATTGGGTTTTTTGT+GGG + chr6_3:97304643-97304662 Msa0967540:intron 40.0%
!!! TTGGGTTTTTTGTGGGTTTG+TGG + chr6_3:97304650-97304669 Msa0967540:intron 40.0%
TGTGGTGTTCCGTATAATTG+CGG + chr6_3:97304668-97304687 Msa0967540:intron 40.0%
AATGGGATGCCGCAATTATA+CGG - chr6_3:97304680-97304699 None:intergenic 40.0%
!! AATAGAAGCGGGCTGAATAT+AGG + chr6_3:97304885-97304904 Msa0967540:intron 40.0%
ATTTACCTACGAAGCAACTC+AGG + chr6_3:97304950-97304969 Msa0967540:intron 40.0%
CTCTTCCTTAAGAACCAGTT+AGG + chr6_3:97305109-97305128 Msa0967540:intron 40.0%
GAAAGACTTCCCTGGTTAAT+GGG - chr6_3:97305182-97305201 None:intergenic 40.0%
TTCACTAAAGAAGCAAGTGC+TGG - chr6_3:97305276-97305295 None:intergenic 40.0%
TACATATCTAGTCCCATGCT+TGG + chr6_3:97305300-97305319 Msa0967540:intron 40.0%
!! GTCTTTTGTTTGTCTCAGGA+TGG + chr6_3:97305672-97305691 Msa0967540:intron 40.0%
TTTGACCAGAGTAAAGGCAA+AGG - chr6_3:97305713-97305732 None:intergenic 40.0%
! AGCCATTGCTGTGTTTTTCA+TGG + chr6_3:97305851-97305870 Msa0967540:three_prime_UTR 40.0%
TGCCATGAAAAACACAGCAA+TGG - chr6_3:97305856-97305875 None:intergenic 40.0%
! ATTGCTGTGTTTTTCATGGC+AGG + chr6_3:97305855-97305874 Msa0967540:three_prime_UTR 40.0%
! TGGAGAGAAGAAGAGTGTGT+GGG - chr6_3:97301360-97301379 None:intergenic 45.0%
! ATGGAGAGAAGAAGAGTGTG+TGG - chr6_3:97301361-97301380 None:intergenic 45.0%
AGATTGAAACTTGCGAGGTG+TGG - chr6_3:97301405-97301424 None:intergenic 45.0%
! AAAGAGGGTTGATTCCTTCG+AGG + chr6_3:97301759-97301778 Msa0967540:CDS 45.0%
! AAGAGGGTTGATTCCTTCGA+GGG + chr6_3:97301760-97301779 Msa0967540:CDS 45.0%
! GTTGATTCCTTCGAGGGATA+TGG + chr6_3:97301766-97301785 Msa0967540:CDS 45.0%
! ATTGGCTCAGTTGAAGCCTT+TGG + chr6_3:97301823-97301842 Msa0967540:CDS 45.0%
!! CAGTTGAAGCCTTTGGTTCT+TGG + chr6_3:97301830-97301849 Msa0967540:CDS 45.0%
!! GAAGCCTTTGGTTCTTGGTA+AGG + chr6_3:97301835-97301854 Msa0967540:CDS 45.0%
TAGTGCCTAGGAATCCTAGA+TGG + chr6_3:97301915-97301934 Msa0967540:CDS 45.0%
AGTGCCTAGGAATCCTAGAT+GGG + chr6_3:97301916-97301935 Msa0967540:CDS 45.0%
TGTTTATGGGAGAGGTTTCG+AGG + chr6_3:97301940-97301959 Msa0967540:CDS 45.0%
GACTCTGCTGCTATGAAAAC+TGG + chr6_3:97301995-97302014 Msa0967540:CDS 45.0%
TCTGCTGCTATGAAAACTGG+AGG + chr6_3:97301998-97302017 Msa0967540:CDS 45.0%
CTACGTGTCAGTGTCGTATA+TGG + chr6_3:97302177-97302196 Msa0967540:intron 45.0%
! CTACGTGTCATTGTCACATC+TGG + chr6_3:97302323-97302342 Msa0967540:intron 45.0%
!! TATTGTTTAGGGTGCCGTTC+TGG + chr6_3:97302367-97302386 Msa0967540:intron 45.0%
!! TGGTGCTACTTCACAACCTT+TGG + chr6_3:97302856-97302875 Msa0967540:intron 45.0%
TGCCATCCATTAGGTACCAA+AGG - chr6_3:97302875-97302894 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr6_3:97302913-97302932 Msa0967540:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr6_3:97302914-97302933 Msa0967540:intron 45.0%
GTCGGCTACATAAACAACCT+AGG + chr6_3:97302936-97302955 Msa0967540:intron 45.0%
TCGTCCTAGGTTGTTTACCA+GGG + chr6_3:97303130-97303149 Msa0967540:CDS 45.0%
GAAGTAGCAACTGACAAGTC+TGG - chr6_3:97303185-97303204 None:intergenic 45.0%
CAGTGATTGTTCACCAGACA+TGG - chr6_3:97303218-97303237 None:intergenic 45.0%
! CTTGCAGCAAAAGTGTGCAA+AGG - chr6_3:97303511-97303530 None:intergenic 45.0%
! TTGCACACTTTTGCTGCAAG+CGG + chr6_3:97303511-97303530 Msa0967540:CDS 45.0%
CGAGTTTCTCAAGAGACTGT+TGG - chr6_3:97303736-97303755 None:intergenic 45.0%
CAATGATGAATTCCCGGTGA+GGG - chr6_3:97303883-97303902 None:intergenic 45.0%
ACAATGATGAATTCCCGGTG+AGG - chr6_3:97303884-97303903 None:intergenic 45.0%
TAAGCTATCCTGGGAGCTTA+TGG + chr6_3:97304029-97304048 Msa0967540:intron 45.0%
GCATATTTCCATAAGCTCCC+AGG - chr6_3:97304040-97304059 None:intergenic 45.0%
TATGTGCTGGAAACAGGATG+GGG + chr6_3:97304249-97304268 Msa0967540:intron 45.0%
GTGGTCCACAAAAGAGTAAG+AGG - chr6_3:97304401-97304420 None:intergenic 45.0%
CAAGACGCACAAAAAACTCG+CGG - chr6_3:97304723-97304742 None:intergenic 45.0%
!! AGGTGCTTTTAATGGGTCGT+TGG + chr6_3:97304905-97304924 Msa0967540:intron 45.0%
CAACATAACACCAACACACG+AGG - chr6_3:97305042-97305061 None:intergenic 45.0%
!! CTCGTGTGTTGGTGTTATGT+TGG + chr6_3:97305040-97305059 Msa0967540:intron 45.0%
AAGAGATTCGCCCATTAACC+AGG + chr6_3:97305169-97305188 Msa0967540:intron 45.0%
AGAGATTCGCCCATTAACCA+GGG + chr6_3:97305170-97305189 Msa0967540:intron 45.0%
GGAAAGACTTCCCTGGTTAA+TGG - chr6_3:97305183-97305202 None:intergenic 45.0%
TGACTTAGGAAAGACTTCCC+TGG - chr6_3:97305190-97305209 None:intergenic 45.0%
TTCTTCTTATCCCCGTCTGT+CGG - chr6_3:97305788-97305807 None:intergenic 45.0%
GCAAGCAGCTCTTCAGAATA+TGG + chr6_3:97305880-97305899 Msa0967540:three_prime_UTR 45.0%
! AAGAAGAGTGTGTGGGGTTG+TGG - chr6_3:97301353-97301372 None:intergenic 50.0%
! GGAGAGAAGAAGAGTGTGTG+GGG - chr6_3:97301359-97301378 None:intergenic 50.0%
GACTGTCTTGTCTTCGAGGA+AGG + chr6_3:97301512-97301531 Msa0967540:CDS 50.0%
ACGAGGTTGTTGTCGGAAGT+TGG - chr6_3:97301560-97301579 None:intergenic 50.0%
!! AAGGTGGGTTGAGTGATGAG+AGG + chr6_3:97301891-97301910 Msa0967540:CDS 50.0%
!! AGGTGGGTTGAGTGATGAGA+GGG + chr6_3:97301892-97301911 Msa0967540:CDS 50.0%
! ACAGCCCATCTAGGATTCCT+AGG - chr6_3:97301923-97301942 None:intergenic 50.0%
CTCCCATAAACAGCCCATCT+AGG - chr6_3:97301932-97301951 None:intergenic 50.0%
!! AGATGGGCTGTTTATGGGAG+AGG + chr6_3:97301932-97301951 Msa0967540:CDS 50.0%
ATACGTGTCAGCCACCAGAA+CGG - chr6_3:97302384-97302403 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr6_3:97302915-97302934 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr6_3:97302912-97302931 Msa0967540:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr6_3:97302918-97302937 Msa0967540:intron 50.0%
GTCGTCCTAGGTTGTTTACC+AGG + chr6_3:97303129-97303148 Msa0967540:CDS 50.0%
TCCTAGGTTGTTTACCAGGG+AGG + chr6_3:97303133-97303152 Msa0967540:CDS 50.0%
TCCTCCCTGGTAAACAACCT+AGG - chr6_3:97303137-97303156 None:intergenic 50.0%
GTTGTTTACCAGGGAGGAGA+GGG + chr6_3:97303139-97303158 Msa0967540:CDS 50.0%
TTGCTGTGTCTTAGGATGGC+TGG + chr6_3:97304441-97304460 Msa0967540:intron 50.0%
GAATGCCTGAGTTGCTTCGT+AGG - chr6_3:97304958-97304977 None:intergenic 50.0%
GCCTTGCAGGAGAAGTGATA+AGG + chr6_3:97305405-97305424 Msa0967540:intron 50.0%
GCCTTATCACTTCTCCTGCA+AGG - chr6_3:97305409-97305428 None:intergenic 50.0%
GAGTAAAGGCAAAGGTCGAG+TGG - chr6_3:97305705-97305724 None:intergenic 50.0%
CTCGACCTTTGCCTTTACTC+TGG + chr6_3:97305705-97305724 Msa0967540:CDS 50.0%
TTATAGACGCTCCCGACAGA+CGG + chr6_3:97305773-97305792 Msa0967540:CDS 50.0%
TCTTCTTATCCCCGTCTGTC+GGG - chr6_3:97305787-97305806 None:intergenic 50.0%
CGGAGACTGTCTTGTCTTCG+AGG + chr6_3:97301508-97301527 Msa0967540:CDS 55.0%
GTGATGAGAGGGTAGTGCCT+AGG + chr6_3:97301903-97301922 Msa0967540:CDS 55.0%
CAGGTGCGCTTGACACGTAA+TGG + chr6_3:97302119-97302138 Msa0967540:intron 55.0%
!! TGTTTAGGGTGCCGTTCTGG+TGG + chr6_3:97302370-97302389 Msa0967540:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr6_3:97302920-97302939 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr6_3:97302926-97302945 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr6_3:97302927-97302946 None:intergenic 55.0%
GGTTGTTTACCAGGGAGGAG+AGG + chr6_3:97303138-97303157 Msa0967540:CDS 55.0%
CAACAAATCCCTCTCCTCCC+TGG - chr6_3:97303150-97303169 None:intergenic 55.0%
AATCTCAGTCCTCGCCTTGC+AGG + chr6_3:97305392-97305411 Msa0967540:intron 55.0%
ATCACTTCTCCTGCAAGGCG+AGG - chr6_3:97305404-97305423 None:intergenic 55.0%
!! GTCTGTCGGGAGCGTCTATA+AGG - chr6_3:97305774-97305793 None:intergenic 55.0%
TATAGACGCTCCCGACAGAC+GGG + chr6_3:97305774-97305793 Msa0967540:CDS 55.0%
GATGAATTCCCGGTGAGGGC+AGG - chr6_3:97303879-97303898 None:intergenic 60.0%
ATAGACGCTCCCGACAGACG+GGG + chr6_3:97305775-97305794 Msa0967540:CDS 60.0%
CGTGCTCTTCCTGCCCTCAC+CGG + chr6_3:97303867-97303886 Msa0967540:intron 65.0%
GTGCTCTTCCTGCCCTCACC+GGG + chr6_3:97303868-97303887 Msa0967540:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 97301268 97306058 97301268 ID=Msa0967540;Name=Msa0967540
chr6_3 mRNA 97301268 97306058 97301268 ID=Msa0967540-mRNA-1;Parent=Msa0967540;Name=Msa0967540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=22|1|1|1|0.85|0.75|8|212|441
chr6_3 exon 97301268 97302019 97301268 ID=Msa0967540-mRNA-1:exon:18109;Parent=Msa0967540-mRNA-1
chr6_3 exon 97303129 97303205 97303129 ID=Msa0967540-mRNA-1:exon:18110;Parent=Msa0967540-mRNA-1
chr6_3 exon 97303496 97303594 97303496 ID=Msa0967540-mRNA-1:exon:18111;Parent=Msa0967540-mRNA-1
chr6_3 exon 97303681 97303779 97303681 ID=Msa0967540-mRNA-1:exon:18112;Parent=Msa0967540-mRNA-1
chr6_3 exon 97304265 97304363 97304265 ID=Msa0967540-mRNA-1:exon:18113;Parent=Msa0967540-mRNA-1
chr6_3 exon 97304455 97304553 97304455 ID=Msa0967540-mRNA-1:exon:18114;Parent=Msa0967540-mRNA-1
chr6_3 exon 97305690 97305964 97305690 ID=Msa0967540-mRNA-1:exon:18115;Parent=Msa0967540-mRNA-1
chr6_3 exon 97305999 97306058 97305999 ID=Msa0967540-mRNA-1:exon:18116;Parent=Msa0967540-mRNA-1
chr6_3 five_prime_UTR 97301268 97301289 97301268 ID=Msa0967540-mRNA-1:five_prime_utr;Parent=Msa0967540-mRNA-1
chr6_3 CDS 97301290 97302019 97301290 ID=Msa0967540-mRNA-1:cds;Parent=Msa0967540-mRNA-1
chr6_3 CDS 97303129 97303205 97303129 ID=Msa0967540-mRNA-1:cds;Parent=Msa0967540-mRNA-1
chr6_3 CDS 97303496 97303594 97303496 ID=Msa0967540-mRNA-1:cds;Parent=Msa0967540-mRNA-1
chr6_3 CDS 97303681 97303779 97303681 ID=Msa0967540-mRNA-1:cds;Parent=Msa0967540-mRNA-1
chr6_3 CDS 97304265 97304363 97304265 ID=Msa0967540-mRNA-1:cds;Parent=Msa0967540-mRNA-1
chr6_3 CDS 97304455 97304553 97304455 ID=Msa0967540-mRNA-1:cds;Parent=Msa0967540-mRNA-1
chr6_3 CDS 97305690 97305812 97305690 ID=Msa0967540-mRNA-1:cds;Parent=Msa0967540-mRNA-1
chr6_3 three_prime_UTR 97305813 97305964 97305813 ID=Msa0967540-mRNA-1:three_prime_utr;Parent=Msa0967540-mRNA-1
chr6_3 three_prime_UTR 97305999 97306058 97305999 ID=Msa0967540-mRNA-1:three_prime_utr;Parent=Msa0967540-mRNA-1
Gene Sequence

>Msa0967540

ATGTTGTCAATTGCAACAAGAACAACAAAAATGTTCAATTTTTCCACACTTGTTCGTAATCCACAACCCCACACACTCTTCTTCTCTCCATTCCCTTCTTCTTCTTCTTCTTCCACACCTCGCAAGTTTCAATCTTTTCAATCTCTCACAAACCGCAACTTCCACAAAATTCTCTCTTCATCACACCAACATGACAACAACTACGAAGAACACATCATCGGAGACTGTCTTGTCTTCGAGGAAGGCATTTTCGAAGACCCCATTTTTCCAACTTCCGACAACAACCTCGTAAACAACAAAAAACCAAAACCAATTTCAATTTCAAAGAAGAAAAAGAAGACAGTGGTAAAGTCCGAGAATCTTGTTCCTGATAAATGGAAAGAAGTTCAAGCAGAGATAAACATAACGAAGAAAGAACGGCGTAAGATAGCTCAAGAGATTGAGTTTAATAGTAAAGTTATGAAGAAGAAAAGAGGGTTGATTCCTTCGAGGGATATGGATTTGAATGAGTATAAGGCTTATAAAGAAGCTAAATTGGCTCAGTTGAAGCCTTTGGTTCTTGGTAAGGTTTTTGCTGAGAAAGAAGATGATGAAGAAGAAGAAGGTGGGTTGAGTGATGAGAGGGTAGTGCCTAGGAATCCTAGATGGGCTGTTTATGGGAGAGGTTTCGAGGATGTTAATGAGTTTTTGAATAGTGAGAGTTATGACTCTGCTGCTATGAAAACTGGAGGTCGTCCTAGGTTGTTTACCAGGGAGGAGAGGGATTTGTTGAGTAAGAAAAAGCCAGACTTGTCAGTTGCTACTTCAGATAAATGGCTTCCTTTGCACACTTTTGCTGCAAGCGGAGAATCTTTACTTTTAGAATCTTTGTTGCGGCATGATGTTGATATTAATGTTATGGATAAGGATGGTTTGACCGCTCTTTACAAAGCGGTAATTGGAAGAAAGCATGCCATAACCAACAGTCTCTTGAGAAACTCGGCGAATCCGTTTGTGCAAGATAATGATGGGGCCACCTTGATTCACTATGCTGTACAAACAGCGTCTGTCCGAACAATTAAAGTACTCTTGTTGTACAATGTGGATATAAATCTTCAGGACAATGATGGCTGGACACCATTACATCTTGCTGTTCAGACTCAGAGAACTGATATAGTGAAGCTTCTGCTGATTAAAGGTGCTGATCAGAAATTAAAAAACAAGGATGGTTTAACTCCACTCGACCTTTGCCTTTACTCTGGTCAAAATGTCAGAACATATGAGTTAATCAAGTTGTTGAAACAGCCTTATAGACGCTCCCGACAGACGGGGATAAGAAGAAAATAA

Protein sequence

>Msa0967540

MLSIATRTTKMFNFSTLVRNPQPHTLFFSPFPSSSSSSTPRKFQSFQSLTNRNFHKILSSSHQHDNNYEEHIIGDCLVFEEGIFEDPIFPTSDNNLVNNKKPKPISISKKKKKTVVKSENLVPDKWKEVQAEINITKKERRKIAQEIEFNSKVMKKKRGLIPSRDMDLNEYKAYKEAKLAQLKPLVLGKVFAEKEDDEEEEGGLSDERVVPRNPRWAVYGRGFEDVNEFLNSESYDSAAMKTGGRPRLFTREERDLLSKKKPDLSVATSDKWLPLHTFAASGESLLLESLLRHDVDINVMDKDGLTALYKAVIGRKHAITNSLLRNSANPFVQDNDGATLIHYAVQTASVRTIKVLLLYNVDINLQDNDGWTPLHLAVQTQRTDIVKLLLIKGADQKLKNKDGLTPLDLCLYSGQNVRTYELIKLLKQPYRRSRQTGIRRK*