AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102290 MtrunA17_Chr1g0156491 77.966 177 19 2 1 177 1 157 2.15e-90 260
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102290 AT1G75690.1 59.412 170 47 4 8 177 7 154 5.10e-60 184

Find 57 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTATCTATGTAAAATTT+TGG 0.181569 1_3:-9045392 Msa0102290:three_prime_UTR
AATGAGTTTACTATCTTAAA+TGG 0.210653 1_3:-9045248 Msa0102290:three_prime_UTR
AGATTGAGGGGCACTGATTT+TGG 0.211384 1_3:-9045549 Msa0102290:three_prime_UTR
GGGCTGCGTGTTATCTCTTT+TGG 0.263030 1_3:+9046850 None:intergenic
TGCTTCCCATGCAATGGTTC+TGG 0.280691 1_3:-9046827 Msa0102290:CDS
ATGTACTCATTCAATTTCTT+TGG 0.295039 1_3:-9045509 Msa0102290:three_prime_UTR
TAGGCATAGTTACTTTCTCC+TGG 0.364821 1_3:+9045305 None:intergenic
CGTGGATAAAATGTGGGTTT+TGG 0.374056 1_3:+9047190 None:intergenic
TTGAGTGTGGCTGTTGGAAT+TGG 0.393770 1_3:-9047020 Msa0102290:CDS
CAAAATTCAATCTTTACAAC+AGG 0.416741 1_3:+9045342 None:intergenic
AGAACCATTGCATGGGAAGC+AGG 0.424768 1_3:+9046829 None:intergenic
AAGTTCAACAGTCACATTAC+CGG 0.426738 1_3:+9045864 None:intergenic
CAGGTAGTTGCTATAACTGT+TGG 0.428401 1_3:-9047047 Msa0102290:CDS
AACTAAGTGTTGAATGTGTT+AGG 0.436200 1_3:+9047341 None:intergenic
AAACAAAATCTGCATTTCTC+TGG 0.448676 1_3:+9045892 None:intergenic
GTTATGTTGATGCTTTCATT+TGG 0.457520 1_3:-9045456 Msa0102290:three_prime_UTR
GTAGTAGATAAGGATTTAAG+AGG 0.469567 1_3:+9047241 None:intergenic
AAGAGGAGAAGAAAGAAAAG+TGG 0.471069 1_3:+9047258 None:intergenic
TGTACAACTTGTCAAGGATC+TGG 0.478203 1_3:-9045781 Msa0102290:CDS
AGAAAAGTGGAATGTAATTG+AGG 0.481069 1_3:+9047271 None:intergenic
AGGCATAGTTACTTTCTCCT+GGG 0.485729 1_3:+9045306 None:intergenic
AGGGAGTGGCCTAATATCAT+TGG 0.501462 1_3:+9045420 None:intergenic
CTGAGAGAAGCTAAGATTGA+GGG 0.505701 1_3:-9045562 Msa0102290:exon
TTTAATACGTGGATAAAATG+TGG 0.513316 1_3:+9047183 None:intergenic
TTACATAGATAGGTCATGAA+AGG 0.516871 1_3:+9045400 None:intergenic
TTTGTTGTGCATATGGCCCC+AGG 0.518457 1_3:-9045323 Msa0102290:three_prime_UTR
TAATTGTGTAGTAGTAGATA+AGG 0.518803 1_3:+9047231 None:intergenic
TACATAGATAGGTCATGAAA+GGG 0.519051 1_3:+9045401 None:intergenic
TTAATACGTGGATAAAATGT+GGG 0.525605 1_3:+9047184 None:intergenic
ACTGAGAGAAGCTAAGATTG+AGG 0.542735 1_3:-9045563 Msa0102290:exon
CAGCCCTGCTTCCCATGCAA+TGG 0.546625 1_3:-9046833 Msa0102290:CDS
GAACACCGTACCTACGATCA+AGG 0.554130 1_3:+9045743 None:intergenic
AACAACGGTGATAGTTATGT+AGG 0.558549 1_3:+9045286 None:intergenic
GGTAATGTGACTGTTGAACT+TGG 0.571939 1_3:-9045862 Msa0102290:CDS
GAACCATTGCATGGGAAGCA+GGG 0.571952 1_3:+9046830 None:intergenic
ATAACTTTGATAGTTATATG+TGG 0.581363 1_3:+9045474 None:intergenic
TGAACTTGGTGGAGCTGAGA+CGG 0.581832 1_3:-9045848 Msa0102290:CDS
GTGACAGCTTCACCACTGAA+TGG 0.583875 1_3:-9047421 Msa0102290:five_prime_UTR
CTGCATAAATTGTGATGGTG+CGG 0.586364 1_3:-9045815 Msa0102290:CDS
AGATAGGTCATGAAAGGGAG+TGG 0.587821 1_3:+9045406 None:intergenic
TGCATAAATTGTGATGGTGC+GGG 0.591712 1_3:-9045814 Msa0102290:CDS
CGAGCTCCAGAACCATTGCA+TGG 0.592093 1_3:+9046821 None:intergenic
GGCATAGTTACTTTCTCCTG+GGG 0.597615 1_3:+9045307 None:intergenic
TCTCGCTGCATAAATTGTGA+TGG 0.600927 1_3:-9045820 Msa0102290:CDS
ATCAATCATCATCCATTCAG+TGG 0.610636 1_3:+9047409 None:intergenic
CTGACATGTACAACTTGTCA+AGG 0.612986 1_3:-9045787 Msa0102290:CDS
ATTTGCGATTCATAAAACAC+TGG 0.613193 1_3:+9046993 None:intergenic
GTGTTGAATGTGTTAGGCAA+TGG 0.621072 1_3:+9047347 None:intergenic
ACTTGGTGGAGCTGAGACGG+AGG 0.632275 1_3:-9045845 Msa0102290:CDS
AGTTCAAGAGCTTTAATACG+TGG 0.639758 1_3:+9047172 None:intergenic
AACCTCGTTACCTTGATCGT+AGG 0.640316 1_3:-9045753 Msa0102290:intron
GCTGTCACAACCACATGACA+TGG 0.642254 1_3:+9047436 None:intergenic
GAGCTCCAGAACCATTGCAT+GGG 0.645320 1_3:+9046822 None:intergenic
AATGTGACTGTTGAACTTGG+TGG 0.646977 1_3:-9045859 Msa0102290:CDS
TGAGAGAAGCTAAGATTGAG+GGG 0.652158 1_3:-9045561 Msa0102290:three_prime_UTR
TCTTGAACTTGATCAAAACA+CGG 0.674004 1_3:-9047158 Msa0102290:intron
TACCTACGATCAAGGTAACG+AGG 0.728545 1_3:+9045751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATAGTAATAAATAAA+TGG + chr1_3:9045728-9045747 None:intergenic 10.0%
!!! TAAAATACTGATTAATAATA+TGG + chr1_3:9046550-9046569 None:intergenic 10.0%
!! ATTATTAAATTATTACAAAG+GGG + chr1_3:9046965-9046984 None:intergenic 10.0%
!! CATTATTAAATTATTACAAA+GGG + chr1_3:9046966-9046985 None:intergenic 10.0%
!! TCATTATTAAATTATTACAA+AGG + chr1_3:9046967-9046986 None:intergenic 10.0%
!! ATGATATAGTAATAAATAAA+TGG + chr1_3:9045728-9045747 None:intergenic 10.0%
!!! TAAAATACTGATTAATAATA+TGG + chr1_3:9046550-9046569 None:intergenic 10.0%
!! ATTATTAAATTATTACAAAG+GGG + chr1_3:9046965-9046984 None:intergenic 10.0%
!! CATTATTAAATTATTACAAA+GGG + chr1_3:9046966-9046985 None:intergenic 10.0%
!! TCATTATTAAATTATTACAA+AGG + chr1_3:9046967-9046986 None:intergenic 10.0%
!! TATATCATATAATAATGTGT+TGG - chr1_3:9045740-9045759 Msa0102290:intron 15.0%
!! GCAACAAATTAAAAAAAAAA+AGG + chr1_3:9045798-9045817 None:intergenic 15.0%
!!! TTTTTTTTTTAATTTGTTGC+AGG - chr1_3:9045798-9045817 Msa0102290:CDS 15.0%
!! AAGTTAAATTATATAACTTC+TGG - chr1_3:9046318-9046337 Msa0102290:intron 15.0%
!! TATACCAAGAATAATAAAAT+AGG - chr1_3:9046592-9046611 Msa0102290:intron 15.0%
!!! ATAACCTATTTTATTATTCT+TGG + chr1_3:9046599-9046618 None:intergenic 15.0%
!! TATATCATATAATAATGTGT+TGG - chr1_3:9045740-9045759 Msa0102290:intron 15.0%
!! GCAACAAATTAAAAAAAAAA+AGG + chr1_3:9045798-9045817 None:intergenic 15.0%
!!! TTTTTTTTTTAATTTGTTGC+AGG - chr1_3:9045798-9045817 Msa0102290:CDS 15.0%
!! AAGTTAAATTATATAACTTC+TGG - chr1_3:9046318-9046337 Msa0102290:intron 15.0%
!! TATACCAAGAATAATAAAAT+AGG - chr1_3:9046592-9046611 Msa0102290:intron 15.0%
!!! ATAACCTATTTTATTATTCT+TGG + chr1_3:9046599-9046618 None:intergenic 15.0%
!! TGAATGAATGAATAAGAAAT+AGG + chr1_3:9045555-9045574 None:intergenic 20.0%
!!! ACACTTTATACTTTTATGAA+TGG - chr1_3:9045907-9045926 Msa0102290:CDS 20.0%
!!! CTATAAGCATATAAACTTTT+TGG + chr1_3:9046106-9046125 None:intergenic 20.0%
!! CAAAAAGTTTATATGCTTAT+AGG - chr1_3:9046104-9046123 Msa0102290:intron 20.0%
!!! TGTGGATAAGTTTTTTTTAT+AGG - chr1_3:9046134-9046153 Msa0102290:intron 20.0%
!!! TAAGTTTTTTTTATAGGTAG+TGG - chr1_3:9046140-9046159 Msa0102290:intron 20.0%
!! ATTTGTAAAAGATTGCTTAT+AGG - chr1_3:9046281-9046300 Msa0102290:intron 20.0%
!!! AACATTTTCAAAGATAAGAT+TGG + chr1_3:9046750-9046769 None:intergenic 20.0%
!!! ATAACTTTGATAGTTATATG+TGG + chr1_3:9047200-9047219 None:intergenic 20.0%
!!! CAATTTTAACCAATGATATT+AGG - chr1_3:9047242-9047261 Msa0102290:CDS 20.0%
!! TACAAAAACATAATCAACAA+CGG + chr1_3:9047403-9047422 None:intergenic 20.0%
!! AATGAGTTTACTATCTTAAA+TGG - chr1_3:9047423-9047442 Msa0102290:five_prime_UTR 20.0%
!! TGAATGAATGAATAAGAAAT+AGG + chr1_3:9045555-9045574 None:intergenic 20.0%
!!! ACACTTTATACTTTTATGAA+TGG - chr1_3:9045907-9045926 Msa0102290:CDS 20.0%
!!! CTATAAGCATATAAACTTTT+TGG + chr1_3:9046106-9046125 None:intergenic 20.0%
!! CAAAAAGTTTATATGCTTAT+AGG - chr1_3:9046104-9046123 Msa0102290:intron 20.0%
!!! TGTGGATAAGTTTTTTTTAT+AGG - chr1_3:9046134-9046153 Msa0102290:intron 20.0%
!!! TAAGTTTTTTTTATAGGTAG+TGG - chr1_3:9046140-9046159 Msa0102290:intron 20.0%
!! ATTTGTAAAAGATTGCTTAT+AGG - chr1_3:9046281-9046300 Msa0102290:intron 20.0%
!!! AACATTTTCAAAGATAAGAT+TGG + chr1_3:9046750-9046769 None:intergenic 20.0%
!!! ATAACTTTGATAGTTATATG+TGG + chr1_3:9047200-9047219 None:intergenic 20.0%
!!! CAATTTTAACCAATGATATT+AGG - chr1_3:9047242-9047261 Msa0102290:CDS 20.0%
!! TACAAAAACATAATCAACAA+CGG + chr1_3:9047403-9047422 None:intergenic 20.0%
!! AATGAGTTTACTATCTTAAA+TGG - chr1_3:9047423-9047442 Msa0102290:five_prime_UTR 20.0%
! TAATTGTGTAGTAGTAGATA+AGG + chr1_3:9045443-9045462 None:intergenic 25.0%
! TTAATACGTGGATAAAATGT+GGG + chr1_3:9045490-9045509 None:intergenic 25.0%
! TTTAATACGTGGATAAAATG+TGG + chr1_3:9045491-9045510 None:intergenic 25.0%
! ATGAATGAATAAGAAATAGG+AGG + chr1_3:9045552-9045571 None:intergenic 25.0%
!! CTTTATACTTTTATGAATGG+AGG - chr1_3:9045910-9045929 Msa0102290:CDS 25.0%
! CTCACAAGTTATTGTTAATT+TGG - chr1_3:9045949-9045968 Msa0102290:intron 25.0%
!!! TGAATTAGCTTTTAGTTCAT+TGG - chr1_3:9046046-9046065 Msa0102290:intron 25.0%
!! TACCATGATAATTTGTCATT+TGG - chr1_3:9047007-9047026 Msa0102290:CDS 25.0%
!! AATAGTGTTAGCAATTTTCA+TGG + chr1_3:9047050-9047069 None:intergenic 25.0%
! ATGTACTCATTCAATTTCTT+TGG - chr1_3:9047162-9047181 Msa0102290:CDS 25.0%
!! GACCTATCTATGTAAAATTT+TGG - chr1_3:9047279-9047298 Msa0102290:CDS 25.0%
!! CACCAAAATTTTACATAGAT+AGG + chr1_3:9047284-9047303 None:intergenic 25.0%
! CAAAATTCAATCTTTACAAC+AGG + chr1_3:9047332-9047351 None:intergenic 25.0%
!!! ATTGAATTTTGTTGTGCATA+TGG - chr1_3:9047341-9047360 Msa0102290:five_prime_UTR 25.0%
! TAATTGTGTAGTAGTAGATA+AGG + chr1_3:9045443-9045462 None:intergenic 25.0%
! TTAATACGTGGATAAAATGT+GGG + chr1_3:9045490-9045509 None:intergenic 25.0%
! TTTAATACGTGGATAAAATG+TGG + chr1_3:9045491-9045510 None:intergenic 25.0%
! ATGAATGAATAAGAAATAGG+AGG + chr1_3:9045552-9045571 None:intergenic 25.0%
!! CTTTATACTTTTATGAATGG+AGG - chr1_3:9045910-9045929 Msa0102290:CDS 25.0%
! CTCACAAGTTATTGTTAATT+TGG - chr1_3:9045949-9045968 Msa0102290:intron 25.0%
!!! TGAATTAGCTTTTAGTTCAT+TGG - chr1_3:9046046-9046065 Msa0102290:intron 25.0%
!! TACCATGATAATTTGTCATT+TGG - chr1_3:9047007-9047026 Msa0102290:CDS 25.0%
!! AATAGTGTTAGCAATTTTCA+TGG + chr1_3:9047050-9047069 None:intergenic 25.0%
! ATGTACTCATTCAATTTCTT+TGG - chr1_3:9047162-9047181 Msa0102290:CDS 25.0%
!! GACCTATCTATGTAAAATTT+TGG - chr1_3:9047279-9047298 Msa0102290:CDS 25.0%
!! CACCAAAATTTTACATAGAT+AGG + chr1_3:9047284-9047303 None:intergenic 25.0%
! CAAAATTCAATCTTTACAAC+AGG + chr1_3:9047332-9047351 None:intergenic 25.0%
!!! ATTGAATTTTGTTGTGCATA+TGG - chr1_3:9047341-9047360 Msa0102290:five_prime_UTR 25.0%
AAAAACATAACCATGTCATG+TGG - chr1_3:9045225-9045244 Msa0102290:three_prime_UTR 30.0%
!! AACTAAGTGTTGAATGTGTT+AGG + chr1_3:9045333-9045352 None:intergenic 30.0%
AGAAAAGTGGAATGTAATTG+AGG + chr1_3:9045403-9045422 None:intergenic 30.0%
GTAGTAGATAAGGATTTAAG+AGG + chr1_3:9045433-9045452 None:intergenic 30.0%
TCTTGAACTTGATCAAAACA+CGG - chr1_3:9045513-9045532 Msa0102290:three_prime_UTR 30.0%
!!! ATGTGAGTGTTTGTTTTTTC+AGG - chr1_3:9045605-9045624 Msa0102290:intron 30.0%
ATTTGCGATTCATAAAACAC+TGG + chr1_3:9045681-9045700 None:intergenic 30.0%
TTGCTTATAGGTAGTGTTTA+TGG - chr1_3:9046293-9046312 Msa0102290:intron 30.0%
AAGAAATTAGCAACCTGATA+TGG + chr1_3:9046725-9046744 None:intergenic 30.0%
AAACAAAATCTGCATTTCTC+TGG + chr1_3:9046782-9046801 None:intergenic 30.0%
! AGAGAAATGCAGATTTTGTT+TGG - chr1_3:9046781-9046800 Msa0102290:intron 30.0%
!! GAGAAATGCAGATTTTGTTT+GGG - chr1_3:9046782-9046801 Msa0102290:intron 30.0%
GTTATGTTGATGCTTTCATT+TGG - chr1_3:9047215-9047234 Msa0102290:CDS 30.0%
TACATAGATAGGTCATGAAA+GGG + chr1_3:9047273-9047292 None:intergenic 30.0%
TTACATAGATAGGTCATGAA+AGG + chr1_3:9047274-9047293 None:intergenic 30.0%
AAAAACATAACCATGTCATG+TGG - chr1_3:9045225-9045244 Msa0102290:three_prime_UTR 30.0%
!! AACTAAGTGTTGAATGTGTT+AGG + chr1_3:9045333-9045352 None:intergenic 30.0%
AGAAAAGTGGAATGTAATTG+AGG + chr1_3:9045403-9045422 None:intergenic 30.0%
GTAGTAGATAAGGATTTAAG+AGG + chr1_3:9045433-9045452 None:intergenic 30.0%
TCTTGAACTTGATCAAAACA+CGG - chr1_3:9045513-9045532 Msa0102290:three_prime_UTR 30.0%
!!! ATGTGAGTGTTTGTTTTTTC+AGG - chr1_3:9045605-9045624 Msa0102290:intron 30.0%
ATTTGCGATTCATAAAACAC+TGG + chr1_3:9045681-9045700 None:intergenic 30.0%
TTGCTTATAGGTAGTGTTTA+TGG - chr1_3:9046293-9046312 Msa0102290:intron 30.0%
AAGAAATTAGCAACCTGATA+TGG + chr1_3:9046725-9046744 None:intergenic 30.0%
AAACAAAATCTGCATTTCTC+TGG + chr1_3:9046782-9046801 None:intergenic 30.0%
! AGAGAAATGCAGATTTTGTT+TGG - chr1_3:9046781-9046800 Msa0102290:intron 30.0%
!! GAGAAATGCAGATTTTGTTT+GGG - chr1_3:9046782-9046801 Msa0102290:intron 30.0%
GTTATGTTGATGCTTTCATT+TGG - chr1_3:9047215-9047234 Msa0102290:CDS 30.0%
TACATAGATAGGTCATGAAA+GGG + chr1_3:9047273-9047292 None:intergenic 30.0%
TTACATAGATAGGTCATGAA+AGG + chr1_3:9047274-9047293 None:intergenic 30.0%
ATCAATCATCATCCATTCAG+TGG + chr1_3:9045265-9045284 None:intergenic 35.0%
AAGAGGAGAAGAAAGAAAAG+TGG + chr1_3:9045416-9045435 None:intergenic 35.0%
! AGTTCAAGAGCTTTAATACG+TGG + chr1_3:9045502-9045521 None:intergenic 35.0%
!! TTATGAATGGAGGAGCATTA+TGG - chr1_3:9045920-9045939 Msa0102290:CDS 35.0%
CTAAAAGCTAATTCAAACGC+TGG + chr1_3:9046041-9046060 None:intergenic 35.0%
! GGAAAGAGACTTTGGTAATA+TGG - chr1_3:9046201-9046220 Msa0102290:intron 35.0%
! GACTTTGGTAATATGGAGTT+CGG - chr1_3:9046208-9046227 Msa0102290:intron 35.0%
! ATGCTAGCTTGAACAATCAT+TGG + chr1_3:9046263-9046282 None:intergenic 35.0%
!! TTTGTTGAGCTCTAAGTCAA+AGG - chr1_3:9046453-9046472 Msa0102290:intron 35.0%
!! TTGTTGAGCTCTAAGTCAAA+GGG - chr1_3:9046454-9046473 Msa0102290:intron 35.0%
AATCAGTTCAAGTCCATATC+AGG - chr1_3:9046709-9046728 Msa0102290:intron 35.0%
AAGTTCAACAGTCACATTAC+CGG + chr1_3:9046810-9046829 None:intergenic 35.0%
CGCCAAATGACAAATTATCA+TGG + chr1_3:9047012-9047031 None:intergenic 35.0%
AACAACGGTGATAGTTATGT+AGG + chr1_3:9047388-9047407 None:intergenic 35.0%
ATCAATCATCATCCATTCAG+TGG + chr1_3:9045265-9045284 None:intergenic 35.0%
AAGAGGAGAAGAAAGAAAAG+TGG + chr1_3:9045416-9045435 None:intergenic 35.0%
! AGTTCAAGAGCTTTAATACG+TGG + chr1_3:9045502-9045521 None:intergenic 35.0%
!! TTATGAATGGAGGAGCATTA+TGG - chr1_3:9045920-9045939 Msa0102290:CDS 35.0%
CTAAAAGCTAATTCAAACGC+TGG + chr1_3:9046041-9046060 None:intergenic 35.0%
! GGAAAGAGACTTTGGTAATA+TGG - chr1_3:9046201-9046220 Msa0102290:intron 35.0%
! GACTTTGGTAATATGGAGTT+CGG - chr1_3:9046208-9046227 Msa0102290:intron 35.0%
! ATGCTAGCTTGAACAATCAT+TGG + chr1_3:9046263-9046282 None:intergenic 35.0%
!! TTTGTTGAGCTCTAAGTCAA+AGG - chr1_3:9046453-9046472 Msa0102290:intron 35.0%
!! TTGTTGAGCTCTAAGTCAAA+GGG - chr1_3:9046454-9046473 Msa0102290:intron 35.0%
AATCAGTTCAAGTCCATATC+AGG - chr1_3:9046709-9046728 Msa0102290:intron 35.0%
AAGTTCAACAGTCACATTAC+CGG + chr1_3:9046810-9046829 None:intergenic 35.0%
CGCCAAATGACAAATTATCA+TGG + chr1_3:9047012-9047031 None:intergenic 35.0%
AACAACGGTGATAGTTATGT+AGG + chr1_3:9047388-9047407 None:intergenic 35.0%
GTGTTGAATGTGTTAGGCAA+TGG + chr1_3:9045327-9045346 None:intergenic 40.0%
! CGTGGATAAAATGTGGGTTT+TGG + chr1_3:9045484-9045503 None:intergenic 40.0%
CAGGTAGTTGCTATAACTGT+TGG - chr1_3:9045624-9045643 Msa0102290:intron 40.0%
!! AACTGTTGGTGTTTTGAGTG+TGG - chr1_3:9045638-9045657 Msa0102290:intron 40.0%
CTGTTGTAGTGTAATGTGCA+AGG - chr1_3:9046015-9046034 Msa0102290:intron 40.0%
ATGCTTATAGGCAGTGTTTG+TGG - chr1_3:9046116-9046135 Msa0102290:intron 40.0%
! TTGGTAATATGGAGTTCGGT+TGG - chr1_3:9046212-9046231 Msa0102290:intron 40.0%
TGGTAATATGGAGTTCGGTT+GGG - chr1_3:9046213-9046232 Msa0102290:intron 40.0%
ACAACCTAGTGTCTAGTAAC+CGG + chr1_3:9046683-9046702 None:intergenic 40.0%
!! TGCAGATTTTGTTTGGGAAC+CGG - chr1_3:9046788-9046807 Msa0102290:intron 40.0%
GGTAATGTGACTGTTGAACT+TGG - chr1_3:9046809-9046828 Msa0102290:intron 40.0%
AATGTGACTGTTGAACTTGG+TGG - chr1_3:9046812-9046831 Msa0102290:intron 40.0%
TCTCGCTGCATAAATTGTGA+TGG - chr1_3:9046851-9046870 Msa0102290:CDS 40.0%
! CTGCATAAATTGTGATGGTG+CGG - chr1_3:9046856-9046875 Msa0102290:intron 40.0%
! TGCATAAATTGTGATGGTGC+GGG - chr1_3:9046857-9046876 Msa0102290:intron 40.0%
CTGACATGTACAACTTGTCA+AGG - chr1_3:9046884-9046903 Msa0102290:intron 40.0%
TGTACAACTTGTCAAGGATC+TGG - chr1_3:9046890-9046909 Msa0102290:intron 40.0%
ACTGAGAGAAGCTAAGATTG+AGG - chr1_3:9047108-9047127 Msa0102290:intron 40.0%
CTGAGAGAAGCTAAGATTGA+GGG - chr1_3:9047109-9047128 Msa0102290:intron 40.0%
TGAGAGAAGCTAAGATTGAG+GGG - chr1_3:9047110-9047129 Msa0102290:intron 40.0%
! AGGCATAGTTACTTTCTCCT+GGG + chr1_3:9047368-9047387 None:intergenic 40.0%
! TAGGCATAGTTACTTTCTCC+TGG + chr1_3:9047369-9047388 None:intergenic 40.0%
GTGTTGAATGTGTTAGGCAA+TGG + chr1_3:9045327-9045346 None:intergenic 40.0%
! CGTGGATAAAATGTGGGTTT+TGG + chr1_3:9045484-9045503 None:intergenic 40.0%
CAGGTAGTTGCTATAACTGT+TGG - chr1_3:9045624-9045643 Msa0102290:intron 40.0%
!! AACTGTTGGTGTTTTGAGTG+TGG - chr1_3:9045638-9045657 Msa0102290:intron 40.0%
CTGTTGTAGTGTAATGTGCA+AGG - chr1_3:9046015-9046034 Msa0102290:intron 40.0%
ATGCTTATAGGCAGTGTTTG+TGG - chr1_3:9046116-9046135 Msa0102290:intron 40.0%
! TTGGTAATATGGAGTTCGGT+TGG - chr1_3:9046212-9046231 Msa0102290:intron 40.0%
TGGTAATATGGAGTTCGGTT+GGG - chr1_3:9046213-9046232 Msa0102290:intron 40.0%
ACAACCTAGTGTCTAGTAAC+CGG + chr1_3:9046683-9046702 None:intergenic 40.0%
!! TGCAGATTTTGTTTGGGAAC+CGG - chr1_3:9046788-9046807 Msa0102290:intron 40.0%
GGTAATGTGACTGTTGAACT+TGG - chr1_3:9046809-9046828 Msa0102290:intron 40.0%
AATGTGACTGTTGAACTTGG+TGG - chr1_3:9046812-9046831 Msa0102290:intron 40.0%
TCTCGCTGCATAAATTGTGA+TGG - chr1_3:9046851-9046870 Msa0102290:CDS 40.0%
! CTGCATAAATTGTGATGGTG+CGG - chr1_3:9046856-9046875 Msa0102290:intron 40.0%
! TGCATAAATTGTGATGGTGC+GGG - chr1_3:9046857-9046876 Msa0102290:intron 40.0%
CTGACATGTACAACTTGTCA+AGG - chr1_3:9046884-9046903 Msa0102290:intron 40.0%
TGTACAACTTGTCAAGGATC+TGG - chr1_3:9046890-9046909 Msa0102290:intron 40.0%
ACTGAGAGAAGCTAAGATTG+AGG - chr1_3:9047108-9047127 Msa0102290:intron 40.0%
CTGAGAGAAGCTAAGATTGA+GGG - chr1_3:9047109-9047128 Msa0102290:intron 40.0%
TGAGAGAAGCTAAGATTGAG+GGG - chr1_3:9047110-9047129 Msa0102290:intron 40.0%
! AGGCATAGTTACTTTCTCCT+GGG + chr1_3:9047368-9047387 None:intergenic 40.0%
! TAGGCATAGTTACTTTCTCC+TGG + chr1_3:9047369-9047388 None:intergenic 40.0%
TTGAGTGTGGCTGTTGGAAT+TGG - chr1_3:9045651-9045670 Msa0102290:intron 45.0%
!! TGAATGGAGGAGCATTATGG+AGG - chr1_3:9045923-9045942 Msa0102290:CDS 45.0%
TCTTAACCGTCATGTTCTCG+AGG - chr1_3:9046179-9046198 Msa0102290:intron 45.0%
CTTAACCGTCATGTTCTCGA+GGG - chr1_3:9046180-9046199 Msa0102290:intron 45.0%
TCTTTCCCTCGAGAACATGA+CGG + chr1_3:9046188-9046207 None:intergenic 45.0%
TTCTCGAGGGAAAGAGACTT+TGG - chr1_3:9046193-9046212 Msa0102290:intron 45.0%
GCGATGCTTATGATTGTGTC+TGG - chr1_3:9046647-9046666 Msa0102290:intron 45.0%
AACCTCGTTACCTTGATCGT+AGG - chr1_3:9046918-9046937 Msa0102290:intron 45.0%
TACCTACGATCAAGGTAACG+AGG + chr1_3:9046923-9046942 None:intergenic 45.0%
CGTTACCTTGATCGTAGGTA+CGG - chr1_3:9046923-9046942 Msa0102290:intron 45.0%
!!! AGATTGAGGGGCACTGATTT+TGG - chr1_3:9047122-9047141 Msa0102290:intron 45.0%
AGGGAGTGGCCTAATATCAT+TGG + chr1_3:9047254-9047273 None:intergenic 45.0%
AGATAGGTCATGAAAGGGAG+TGG + chr1_3:9047268-9047287 None:intergenic 45.0%
! GGCATAGTTACTTTCTCCTG+GGG + chr1_3:9047367-9047386 None:intergenic 45.0%
TTGAGTGTGGCTGTTGGAAT+TGG - chr1_3:9045651-9045670 Msa0102290:intron 45.0%
!! TGAATGGAGGAGCATTATGG+AGG - chr1_3:9045923-9045942 Msa0102290:CDS 45.0%
TCTTAACCGTCATGTTCTCG+AGG - chr1_3:9046179-9046198 Msa0102290:intron 45.0%
CTTAACCGTCATGTTCTCGA+GGG - chr1_3:9046180-9046199 Msa0102290:intron 45.0%
TCTTTCCCTCGAGAACATGA+CGG + chr1_3:9046188-9046207 None:intergenic 45.0%
TTCTCGAGGGAAAGAGACTT+TGG - chr1_3:9046193-9046212 Msa0102290:intron 45.0%
GCGATGCTTATGATTGTGTC+TGG - chr1_3:9046647-9046666 Msa0102290:intron 45.0%
AACCTCGTTACCTTGATCGT+AGG - chr1_3:9046918-9046937 Msa0102290:intron 45.0%
TACCTACGATCAAGGTAACG+AGG + chr1_3:9046923-9046942 None:intergenic 45.0%
CGTTACCTTGATCGTAGGTA+CGG - chr1_3:9046923-9046942 Msa0102290:intron 45.0%
!!! AGATTGAGGGGCACTGATTT+TGG - chr1_3:9047122-9047141 Msa0102290:intron 45.0%
AGGGAGTGGCCTAATATCAT+TGG + chr1_3:9047254-9047273 None:intergenic 45.0%
AGATAGGTCATGAAAGGGAG+TGG + chr1_3:9047268-9047287 None:intergenic 45.0%
! GGCATAGTTACTTTCTCCTG+GGG + chr1_3:9047367-9047386 None:intergenic 45.0%
!!! TTATTATTTTAACTTTTTAT+CGG - chr1_3:9046390-9046409 Msa0102290:intron 5.0%
!!! TTATTATTTTAACTTTTTAT+CGG - chr1_3:9046390-9046409 Msa0102290:intron 5.0%
GCTGTCACAACCACATGACA+TGG + chr1_3:9045238-9045257 None:intergenic 50.0%
GTGACAGCTTCACCACTGAA+TGG - chr1_3:9045250-9045269 Msa0102290:three_prime_UTR 50.0%
!! GGTGTTTTGAGTGTGGCTGT+TGG - chr1_3:9045645-9045664 Msa0102290:intron 50.0%
! GGGCTGCGTGTTATCTCTTT+TGG + chr1_3:9045824-9045843 None:intergenic 50.0%
GAACCATTGCATGGGAAGCA+GGG + chr1_3:9045844-9045863 None:intergenic 50.0%
AGAACCATTGCATGGGAAGC+AGG + chr1_3:9045845-9045864 None:intergenic 50.0%
TGCTTCCCATGCAATGGTTC+TGG - chr1_3:9045844-9045863 Msa0102290:CDS 50.0%
GAGCTCCAGAACCATTGCAT+GGG + chr1_3:9045852-9045871 None:intergenic 50.0%
! GCTCTAAGTCAAAGGGAGTG+TGG - chr1_3:9046461-9046480 Msa0102290:intron 50.0%
! CTAAGTCAAAGGGAGTGTGG+AGG - chr1_3:9046464-9046483 Msa0102290:intron 50.0%
! TGTGTCTGGTTGCTTTGTGC+CGG - chr1_3:9046661-9046680 Msa0102290:intron 50.0%
!! TGTGCCGGTTACTAGACACT+AGG - chr1_3:9046676-9046695 Msa0102290:intron 50.0%
! TGAACTTGGTGGAGCTGAGA+CGG - chr1_3:9046823-9046842 Msa0102290:CDS 50.0%
GAACACCGTACCTACGATCA+AGG + chr1_3:9046931-9046950 None:intergenic 50.0%
! TTTGTTGTGCATATGGCCCC+AGG - chr1_3:9047348-9047367 Msa0102290:five_prime_UTR 50.0%
GCTGTCACAACCACATGACA+TGG + chr1_3:9045238-9045257 None:intergenic 50.0%
GTGACAGCTTCACCACTGAA+TGG - chr1_3:9045250-9045269 Msa0102290:three_prime_UTR 50.0%
!! GGTGTTTTGAGTGTGGCTGT+TGG - chr1_3:9045645-9045664 Msa0102290:intron 50.0%
! GGGCTGCGTGTTATCTCTTT+TGG + chr1_3:9045824-9045843 None:intergenic 50.0%
GAACCATTGCATGGGAAGCA+GGG + chr1_3:9045844-9045863 None:intergenic 50.0%
AGAACCATTGCATGGGAAGC+AGG + chr1_3:9045845-9045864 None:intergenic 50.0%
TGCTTCCCATGCAATGGTTC+TGG - chr1_3:9045844-9045863 Msa0102290:CDS 50.0%
GAGCTCCAGAACCATTGCAT+GGG + chr1_3:9045852-9045871 None:intergenic 50.0%
! GCTCTAAGTCAAAGGGAGTG+TGG - chr1_3:9046461-9046480 Msa0102290:intron 50.0%
! CTAAGTCAAAGGGAGTGTGG+AGG - chr1_3:9046464-9046483 Msa0102290:intron 50.0%
! TGTGTCTGGTTGCTTTGTGC+CGG - chr1_3:9046661-9046680 Msa0102290:intron 50.0%
!! TGTGCCGGTTACTAGACACT+AGG - chr1_3:9046676-9046695 Msa0102290:intron 50.0%
! TGAACTTGGTGGAGCTGAGA+CGG - chr1_3:9046823-9046842 Msa0102290:CDS 50.0%
GAACACCGTACCTACGATCA+AGG + chr1_3:9046931-9046950 None:intergenic 50.0%
! TTTGTTGTGCATATGGCCCC+AGG - chr1_3:9047348-9047367 Msa0102290:five_prime_UTR 50.0%
CGAGCTCCAGAACCATTGCA+TGG + chr1_3:9045853-9045872 None:intergenic 55.0%
CGAGCTCCAGAACCATTGCA+TGG + chr1_3:9045853-9045872 None:intergenic 55.0%
CAGCCCTGCTTCCCATGCAA+TGG - chr1_3:9045838-9045857 Msa0102290:CDS 60.0%
! ACTTGGTGGAGCTGAGACGG+AGG - chr1_3:9046826-9046845 Msa0102290:CDS 60.0%
CAGCCCTGCTTCCCATGCAA+TGG - chr1_3:9045838-9045857 Msa0102290:CDS 60.0%
! ACTTGGTGGAGCTGAGACGG+AGG - chr1_3:9046826-9046845 Msa0102290:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 9045224 9047469 9045224 ID=Msa0102290;Name=Msa0102290
chr1_3 mRNA 9045224 9047469 9045224 ID=Msa0102290-mRNA-1;Parent=Msa0102290;Name=Msa0102290-mRNA-1;_AED=0.04;_eAED=0.04;_QI=149|0.5|0.6|1|1|1|5|357|177
chr1_3 exon 9045224 9045602 9045224 ID=Msa0102290-mRNA-1:exon:3591;Parent=Msa0102290-mRNA-1
chr1_3 exon 9045754 9045962 9045754 ID=Msa0102290-mRNA-1:exon:3590;Parent=Msa0102290-mRNA-1
chr1_3 exon 9046822 9046873 9046822 ID=Msa0102290-mRNA-1:exon:3589;Parent=Msa0102290-mRNA-1
chr1_3 exon 9046978 9047066 9046978 ID=Msa0102290-mRNA-1:exon:3588;Parent=Msa0102290-mRNA-1
chr1_3 exon 9047159 9047469 9047159 ID=Msa0102290-mRNA-1:exon:3587;Parent=Msa0102290-mRNA-1
chr1_3 five_prime_UTR 9047321 9047469 9047321 ID=Msa0102290-mRNA-1:five_prime_utr;Parent=Msa0102290-mRNA-1
chr1_3 CDS 9047159 9047320 9047159 ID=Msa0102290-mRNA-1:cds;Parent=Msa0102290-mRNA-1
chr1_3 CDS 9046978 9047066 9046978 ID=Msa0102290-mRNA-1:cds;Parent=Msa0102290-mRNA-1
chr1_3 CDS 9046822 9046873 9046822 ID=Msa0102290-mRNA-1:cds;Parent=Msa0102290-mRNA-1
chr1_3 CDS 9045754 9045962 9045754 ID=Msa0102290-mRNA-1:cds;Parent=Msa0102290-mRNA-1
chr1_3 CDS 9045581 9045602 9045581 ID=Msa0102290-mRNA-1:cds;Parent=Msa0102290-mRNA-1
chr1_3 three_prime_UTR 9045224 9045580 9045224 ID=Msa0102290-mRNA-1:three_prime_utr;Parent=Msa0102290-mRNA-1
Gene Sequence

>Msa0102290

ATGACAATATCTTATTCACTTTCACTTCCTCAATTACATTCCACTTTTCTTTCTTCTCCTCTTAAATCCTTATCTACTACTACACAATTAGCTAGAAATAAATTTCAACCAAAACCCACATTTTATCCACGTATTAAAGCTCTTGAACTTGATCAAAACACGGTAGTTGCTATAACTGTTGGTGTTTTGAGTGTGGCTGTTGGAATTGGCATACCAGTGTTTTATGAATCGCAAATTGATAATGCTGTAAAGCCAAAAGAGATAACACGCAGCCCTGCTTCCCATGCAATGGTTCTGGAGCTCGTTGCTAATTTCTTTACCAATCTTATCTTTGAAAATGTTACACTTTTGCCAGAGAAATGCAGATTTTGTTTGGGAACCGGTAATGTGACTGTTGAACTTGGTGGAGCTGAGACGGAGGTCTCTCGCTGCATAAATTGTGATGGTGCGGGTTCACTGACATGTACAACTTGTCAAGGATCTGGAATTCAACCTCGTTACCTTGATCGTAGAGAATTCAAAGATGATGACTGA

Protein sequence

>Msa0102290

MTISYSLSLPQLHSTFLSSPLKSLSTTTQLARNKFQPKPTFYPRIKALELDQNTVVAITVGVLSVAVGIGIPVFYESQIDNAVKPKEITRSPASHAMVLELVANFFTNLIFENVTLLPEKCRFCLGTGNVTVELGGAETEVSRCINCDGAGSLTCTTCQGSGIQPRYLDRREFKDDD*