Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416090 | XP_003600792.2 | 92.218 | 514 | 9 | 3 | 1 | 484 | 1 | 513 | 0.0 | 970 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416090 | sp|Q0WSN2|DAR2_ARATH | 60.777 | 515 | 157 | 7 | 8 | 484 | 21 | 528 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416090 | G7JA19 | 92.218 | 514 | 9 | 3 | 1 | 484 | 1 | 513 | 0.0 | 970 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0416090 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0399810 | Msa0416090 | -0.802208 | 6.255731e-49 | -8.615850e-47 |
| Msa0416090 | Msa0462740 | 0.883046 | 6.250178e-71 | -8.615850e-47 |
| Msa0416090 | Msa0508330 | 0.846934 | 1.589304e-59 | -8.615850e-47 |
| Msa0416090 | Msa0526520 | 0.838135 | 3.442930e-57 | -8.615850e-47 |
| Msa0416090 | Msa0571900 | 0.804064 | 2.583890e-49 | -8.615850e-47 |
| Msa0416090 | Msa0602320 | 0.800201 | 1.610540e-48 | -8.615850e-47 |
| Msa0416090 | Msa1055520 | 0.806432 | 8.248122e-50 | -8.615850e-47 |
| Msa0416090 | Msa1363310 | 0.840233 | 9.837691e-58 | -8.615850e-47 |
| Msa0416090 | Msa1386580 | 0.838917 | 2.162981e-57 | -8.615850e-47 |
| Msa0334450 | Msa0416090 | 0.819833 | 9.434298e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416090 | MtrunA17_Chr3g0112601 | 92.218 | 514 | 9 | 3 | 1 | 484 | 1 | 513 | 0.0 | 970 |
| Msa0416090 | MtrunA17_Chr5g0436051 | 68.992 | 516 | 116 | 6 | 1 | 484 | 113 | 616 | 0.0 | 685 |
| Msa0416090 | MtrunA17_Chr8g0373781 | 52.349 | 447 | 174 | 6 | 71 | 483 | 90 | 531 | 6.95e-142 | 417 |
| Msa0416090 | MtrunA17_Chr1g0154501 | 48.073 | 493 | 190 | 13 | 32 | 483 | 1 | 468 | 7.27e-142 | 415 |
| Msa0416090 | MtrunA17_Chr5g0403301 | 57.475 | 301 | 105 | 3 | 185 | 483 | 27 | 306 | 1.41e-110 | 329 |
| Msa0416090 | MtrunA17_Chr5g0403271 | 67.320 | 153 | 50 | 0 | 331 | 483 | 1 | 153 | 1.35e-60 | 195 |
| Msa0416090 | MtrunA17_Chr5g0403261 | 36.022 | 372 | 124 | 10 | 32 | 295 | 1 | 366 | 3.10e-57 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416090 | AT2G39830.1 | 60.777 | 515 | 157 | 7 | 8 | 484 | 21 | 528 | 0.0 | 588 |
| Msa0416090 | AT2G39830.2 | 60.425 | 518 | 157 | 8 | 8 | 484 | 21 | 531 | 0.0 | 583 |
| Msa0416090 | AT2G39830.3 | 60.000 | 515 | 152 | 8 | 8 | 484 | 21 | 519 | 0.0 | 573 |
| Msa0416090 | AT2G39830.4 | 57.921 | 404 | 129 | 5 | 8 | 375 | 21 | 419 | 2.24e-157 | 454 |
| Msa0416090 | AT1G19270.1 | 44.712 | 539 | 205 | 7 | 32 | 484 | 1 | 532 | 3.92e-146 | 429 |
| Msa0416090 | AT1G19270.2 | 44.712 | 539 | 205 | 7 | 32 | 484 | 1 | 532 | 3.92e-146 | 429 |
| Msa0416090 | AT4G36860.1 | 53.394 | 442 | 154 | 6 | 74 | 483 | 132 | 553 | 5.59e-145 | 427 |
| Msa0416090 | AT4G36860.3 | 53.394 | 442 | 154 | 6 | 74 | 483 | 156 | 577 | 1.14e-144 | 427 |
| Msa0416090 | AT4G36860.2 | 50.599 | 334 | 116 | 5 | 74 | 375 | 132 | 448 | 1.12e-103 | 317 |
| Msa0416090 | AT5G66620.3 | 38.492 | 504 | 253 | 10 | 8 | 476 | 150 | 631 | 1.98e-102 | 320 |
| Msa0416090 | AT5G66620.4 | 38.492 | 504 | 253 | 10 | 8 | 476 | 150 | 631 | 1.98e-102 | 320 |
| Msa0416090 | AT5G66620.1 | 38.492 | 504 | 253 | 10 | 8 | 476 | 159 | 640 | 2.13e-102 | 320 |
| Msa0416090 | AT5G66610.3 | 42.043 | 421 | 209 | 7 | 80 | 477 | 16 | 424 | 1.75e-96 | 298 |
| Msa0416090 | AT5G66610.1 | 42.043 | 421 | 209 | 7 | 80 | 477 | 143 | 551 | 1.83e-95 | 300 |
| Msa0416090 | AT5G66630.1 | 42.978 | 356 | 176 | 5 | 145 | 476 | 346 | 698 | 8.55e-90 | 289 |
| Msa0416090 | AT5G66610.2 | 39.509 | 448 | 209 | 8 | 80 | 477 | 143 | 578 | 1.60e-89 | 285 |
| Msa0416090 | AT5G66640.3 | 44.444 | 324 | 165 | 5 | 166 | 476 | 10 | 331 | 1.99e-86 | 269 |
| Msa0416090 | AT5G66640.1 | 44.444 | 324 | 165 | 5 | 166 | 476 | 117 | 438 | 3.68e-85 | 270 |
| Msa0416090 | AT5G66640.7 | 44.444 | 324 | 165 | 5 | 166 | 476 | 117 | 438 | 3.68e-85 | 270 |
| Msa0416090 | AT5G66640.5 | 37.444 | 446 | 234 | 10 | 71 | 476 | 30 | 470 | 4.56e-85 | 270 |
| Msa0416090 | AT5G66640.4 | 44.444 | 324 | 165 | 5 | 166 | 476 | 148 | 469 | 1.02e-84 | 269 |
| Msa0416090 | AT5G17890.1 | 39.618 | 419 | 196 | 8 | 104 | 483 | 1208 | 1608 | 2.33e-82 | 278 |
| Msa0416090 | AT5G66640.6 | 34.081 | 446 | 245 | 11 | 71 | 476 | 30 | 466 | 2.99e-69 | 229 |
| Msa0416090 | AT5G66640.2 | 39.815 | 324 | 176 | 6 | 166 | 476 | 148 | 465 | 8.11e-69 | 228 |
| Msa0416090 | AT5G66620.2 | 32.698 | 367 | 192 | 9 | 8 | 341 | 150 | 494 | 5.78e-54 | 189 |
Find 131 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATAAATATAACCTTTA+AGG | 0.090270 | 3_2:-62771111 | None:intergenic |
| ACGGCTATTCTTGTTCTTTA+TGG | 0.148200 | 3_2:+62770752 | Msa0416090:CDS |
| AGGCATAACCCTCTTGTTTC+TGG | 0.157651 | 3_2:-62770523 | None:intergenic |
| CTTTCACACCCTTGCATATA+TGG | 0.193810 | 3_2:+62767575 | Msa0416090:CDS |
| ATTGGAGGTCATCGATTAAT+AGG | 0.218874 | 3_2:+62770686 | Msa0416090:CDS |
| CATGGTTGGTTACGCCTTAA+AGG | 0.230453 | 3_2:+62771097 | Msa0416090:CDS |
| CAGCTTATGGCGGAGGCTTT+AGG | 0.247557 | 3_2:+62771444 | Msa0416090:CDS |
| ATCCAAAGTTGAGAATAAAT+TGG | 0.266485 | 3_2:+62771382 | Msa0416090:CDS |
| GATACTCTATGGTAATTGTT+TGG | 0.269551 | 3_2:+62769202 | Msa0416090:CDS |
| CTGTATCCGCGGGGATAAAA+AGG | 0.275435 | 3_2:-62768828 | None:intergenic |
| CTTCTCTGAGAAGTTTGAAT+TGG | 0.283034 | 3_2:+62771557 | Msa0416090:three_prime_UTR |
| AATACCTCACGCTCAGTAAT+AGG | 0.302681 | 3_2:-62769281 | None:intergenic |
| CACTTGCAGATACCTATAAA+TGG | 0.315905 | 3_2:+62769975 | Msa0416090:intron |
| CAGATACCTATAAATGGTTC+TGG | 0.327287 | 3_2:+62769981 | Msa0416090:intron |
| AATGATTCTTCTCCAGCTTA+TGG | 0.331932 | 3_2:+62771431 | Msa0416090:CDS |
| ACCGCCACCCCTTCCTCTAT+TGG | 0.349455 | 3_2:-62768066 | None:intergenic |
| ACCCAATTTATTCTCAACTT+TGG | 0.354011 | 3_2:-62771384 | None:intergenic |
| ATACTCTATGGTAATTGTTT+GGG | 0.355449 | 3_2:+62769203 | Msa0416090:CDS |
| ATCAAACCAGAACCATTTAT+AGG | 0.366116 | 3_2:-62769987 | None:intergenic |
| ACTGACCAGTCAAACGAATA+TGG | 0.374788 | 3_2:-62771514 | None:intergenic |
| TTTCTCGTTAAGGATATAGA+TGG | 0.392201 | 3_2:+62768724 | Msa0416090:intron |
| TTCAAAATTGGATCCAATAG+AGG | 0.394023 | 3_2:+62768053 | Msa0416090:CDS |
| AATGCAGCTGTTAATAAATA+CGG | 0.395213 | 3_2:+62771473 | Msa0416090:CDS |
| GAGAAGAATCATTGGCAATC+TGG | 0.404259 | 3_2:-62771421 | None:intergenic |
| GTTCTGTTTACCAAGGATCT+AGG | 0.408729 | 3_2:-62768137 | None:intergenic |
| TCCTCCTGCAATTTCATGCT+CGG | 0.411253 | 3_2:+62771611 | Msa0416090:three_prime_UTR |
| AGTATAGGTGTCACCCCTAT+TGG | 0.411574 | 3_2:+62770012 | Msa0416090:CDS |
| TTGTAGCTGTGAAAGATTAG+AGG | 0.414076 | 3_2:+62770082 | Msa0416090:CDS |
| TCATACTCAGAGAGGAAGTC+TGG | 0.418210 | 3_2:+62768005 | Msa0416090:CDS |
| CCCTCCGAGCATGAAATTGC+AGG | 0.420712 | 3_2:-62771615 | None:intergenic |
| GCAAGAGAAAATGAAAATGA+TGG | 0.426655 | 3_2:-62767476 | None:intergenic |
| CTTGACCATATTCGTTTGAC+TGG | 0.427685 | 3_2:+62771509 | Msa0416090:CDS |
| ATAGGCTTCCATCGTCGTTA+TGG | 0.428862 | 3_2:+62767526 | Msa0416090:exon |
| CAAATTCCCATGCTTCTAGT+TGG | 0.440084 | 3_2:+62770363 | Msa0416090:CDS |
| CTAAAGCCTCCGCCATAAGC+TGG | 0.441176 | 3_2:-62771443 | None:intergenic |
| TCCAAAGTTGAGAATAAATT+GGG | 0.442486 | 3_2:+62771383 | Msa0416090:CDS |
| ACTGATGATGATTATGCAAA+AGG | 0.448006 | 3_2:+62768756 | Msa0416090:CDS |
| GTTCTGGTTTGATTGAGTAT+AGG | 0.459803 | 3_2:+62769997 | Msa0416090:CDS |
| CAAGAGAAAATGAAAATGAT+GGG | 0.461185 | 3_2:-62767475 | None:intergenic |
| TTGGAGGTCATCGATTAATA+GGG | 0.465099 | 3_2:+62770687 | Msa0416090:CDS |
| GGGCGAAAGATACTTTAGAT+TGG | 0.466962 | 3_2:+62770218 | Msa0416090:CDS |
| TGCAACAAGGAGATACTCTA+TGG | 0.469294 | 3_2:+62769191 | Msa0416090:CDS |
| TGTTGTTTCAGATACATAGA+TGG | 0.470430 | 3_2:+62770657 | Msa0416090:intron |
| GAGATGAGTGCATGCGATCC+TGG | 0.470780 | 3_2:-62768782 | None:intergenic |
| GTCAGGTTCTTTCTTACATG+TGG | 0.478393 | 3_2:+62771255 | Msa0416090:CDS |
| AATGATGGGGAGAGAAAAGA+AGG | 0.481215 | 3_2:-62767461 | None:intergenic |
| GATTAGAAAATGTGAAGTTA+CGG | 0.482008 | 3_2:+62770733 | Msa0416090:CDS |
| GAGTGACACCGAAAGCAGTC+TGG | 0.486184 | 3_2:-62769248 | None:intergenic |
| GCGAGCTCCGCCTAGATCCT+TGG | 0.490552 | 3_2:+62768127 | Msa0416090:CDS |
| AGTAGTAGTGAATTTATACT+TGG | 0.492649 | 3_2:-62771661 | None:intergenic |
| TCCAATAGAGGAAGGGGTGG+CGG | 0.500442 | 3_2:+62768065 | Msa0416090:CDS |
| CGCGCCTTTCTTTGATGAGT+AGG | 0.501012 | 3_2:-62771357 | None:intergenic |
| TCTCTAATAGCATGATAAAG+AGG | 0.502415 | 3_2:-62770306 | None:intergenic |
| CTCTTGTTTCTGGCATGTGA+TGG | 0.503693 | 3_2:-62770513 | None:intergenic |
| TAGAACTAGGAAGGAGGAAG+AGG | 0.505835 | 3_2:+62768567 | Msa0416090:CDS |
| GCCTCCTACTCATCAAAGAA+AGG | 0.506691 | 3_2:+62771353 | Msa0416090:CDS |
| CACACGAGTTAATGCATGGT+TGG | 0.511861 | 3_2:+62771083 | Msa0416090:CDS |
| AGGATAACCGTGCTAGAACT+AGG | 0.513141 | 3_2:+62768554 | Msa0416090:intron |
| AGATACTTTAGATTGGATGA+TGG | 0.513463 | 3_2:+62770225 | Msa0416090:CDS |
| GAAGTTGTTCTTATTACAGT+GGG | 0.516770 | 3_2:-62771538 | None:intergenic |
| TACATTCTTCTCTCCGACGA+TGG | 0.517179 | 3_2:-62770406 | None:intergenic |
| TAAGGATATAGATGGCGAAC+GGG | 0.518979 | 3_2:+62768732 | Msa0416090:intron |
| CTTGAAGCAGAAGTTATGTC+AGG | 0.522730 | 3_2:+62771278 | Msa0416090:CDS |
| CATTCTCTTAAATTTAAACA+AGG | 0.527645 | 3_2:-62771694 | None:intergenic |
| TCTTCTCCAGCTTATGGCGG+AGG | 0.528067 | 3_2:+62771437 | Msa0416090:CDS |
| TTCTCTTCCAACTAGAAGCA+TGG | 0.528812 | 3_2:-62770370 | None:intergenic |
| GAAGCTGCGGCTGATGTTGA+TGG | 0.531468 | 3_2:-62771314 | None:intergenic |
| CACATACCTTCCTCTACTGC+AGG | 0.531634 | 3_2:-62771233 | None:intergenic |
| GAATCTGCTATAACAGATAC+CGG | 0.533194 | 3_2:+62770273 | Msa0416090:CDS |
| ATAAGCTGGAGAAGAATCAT+TGG | 0.542129 | 3_2:-62771429 | None:intergenic |
| CCATCGCATAACAGAATATG+TGG | 0.542226 | 3_2:+62769164 | Msa0416090:CDS |
| AATTGGATCCAATAGAGGAA+GGG | 0.544250 | 3_2:+62768058 | Msa0416090:CDS |
| AGAATATTGATATCTGATGA+AGG | 0.544355 | 3_2:-62767554 | None:intergenic |
| CTTCCTCTACTGCAGGATCA+AGG | 0.544617 | 3_2:-62771226 | None:intergenic |
| GAAGATTTAAAGATACCAGC+AGG | 0.544900 | 3_2:+62768622 | Msa0416090:CDS |
| AATTTCATGCTCGGAGGGGA+AGG | 0.545780 | 3_2:+62771620 | Msa0416090:three_prime_UTR |
| CAACCTTGATCCTGCAGTAG+AGG | 0.549878 | 3_2:+62771223 | Msa0416090:CDS |
| CCTCCTTCCTAGTTCTAGCA+CGG | 0.551271 | 3_2:-62768561 | None:intergenic |
| CCTGCAATTTCATGCTCGGA+GGG | 0.551389 | 3_2:+62771615 | Msa0416090:three_prime_UTR |
| TGATTATGCAAAAGGACTCC+AGG | 0.551524 | 3_2:+62768764 | Msa0416090:CDS |
| ATAAAGAGGCTGACATTCAC+CGG | 0.553374 | 3_2:-62770292 | None:intergenic |
| AGTAGAGGAAGGTATGTGTC+AGG | 0.554816 | 3_2:+62771238 | Msa0416090:CDS |
| GAAAATTTACCTGTATCCGC+GGG | 0.556759 | 3_2:-62768838 | None:intergenic |
| TGTGGGTGCAGGTTACTCAC+AGG | 0.558481 | 3_2:+62771049 | Msa0416090:intron |
| CTTTGATGAGTAGGAGGCGG+AGG | 0.559142 | 3_2:-62771348 | None:intergenic |
| ACTTTAGATTGGATGATGGA+CGG | 0.560406 | 3_2:+62770229 | Msa0416090:CDS |
| GCCTTTCTTTGATGAGTAGG+AGG | 0.561758 | 3_2:-62771354 | None:intergenic |
| AGAAAATACCATATATGCAA+GGG | 0.562357 | 3_2:-62767583 | None:intergenic |
| AAGAAAATACCATATATGCA+AGG | 0.562532 | 3_2:-62767584 | None:intergenic |
| TCTCTTCCAACTAGAAGCAT+GGG | 0.565520 | 3_2:-62770369 | None:intergenic |
| CTACTGCAGGATCAAGGTTG+CGG | 0.567251 | 3_2:-62771220 | None:intergenic |
| AAATTGGATCCAATAGAGGA+AGG | 0.570246 | 3_2:+62768057 | Msa0416090:CDS |
| GTATTATCATGTTCATGAGA+TGG | 0.570316 | 3_2:-62770050 | None:intergenic |
| CTTGATCCTGCAGTAGAGGA+AGG | 0.575792 | 3_2:+62771227 | Msa0416090:CDS |
| TGACAGTCTGTTCTTCTGAA+AGG | 0.579709 | 3_2:-62770543 | None:intergenic |
| AAGGTAAAGGAGCGCATGGA+GGG | 0.580876 | 3_2:-62768809 | None:intergenic |
| ATTGGATCCAATAGAGGAAG+GGG | 0.580906 | 3_2:+62768059 | Msa0416090:CDS |
| TTTCTTTGATGAGTAGGAGG+CGG | 0.582160 | 3_2:-62771351 | None:intergenic |
| TCCTGCAATTTCATGCTCGG+AGG | 0.583723 | 3_2:+62771614 | Msa0416090:three_prime_UTR |
| CCACATATTCTGTTATGCGA+TGG | 0.593174 | 3_2:-62769164 | None:intergenic |
| TTGTTCTTTATGGTCTTCCG+AGG | 0.593797 | 3_2:+62770762 | Msa0416090:CDS |
| AGAAGTTGTTCTTATTACAG+TGG | 0.596071 | 3_2:-62771539 | None:intergenic |
| CTGTAGACGAAAACATGGCT+TGG | 0.602540 | 3_2:+62768105 | Msa0416090:CDS |
| CATGCATTAACTCGTGTGCA+AGG | 0.604183 | 3_2:-62771078 | None:intergenic |
| CATCACATGCCAGAAACAAG+AGG | 0.608056 | 3_2:+62770514 | Msa0416090:CDS |
| GCTATTAGAGACTATTACGA+AGG | 0.610014 | 3_2:+62770318 | Msa0416090:CDS |
| GGAAAATTTACCTGTATCCG+CGG | 0.614083 | 3_2:-62768839 | None:intergenic |
| TTAAGGATATAGATGGCGAA+CGG | 0.616195 | 3_2:+62768731 | Msa0416090:intron |
| TAACCGTGCTAGAACTAGGA+AGG | 0.619072 | 3_2:+62768558 | Msa0416090:CDS |
| CTTGCACACGAGTTAATGCA+TGG | 0.621249 | 3_2:+62771079 | Msa0416090:CDS |
| GGTAGAAGAAGAAGAAGCTG+CGG | 0.625167 | 3_2:-62771327 | None:intergenic |
| ACCTTCTCCTGGAAGTCTCG+GGG | 0.625683 | 3_2:+62770198 | Msa0416090:intron |
| GATTCTTCTCCAGCTTATGG+CGG | 0.631107 | 3_2:+62771434 | Msa0416090:CDS |
| AAGAGAAAATGAAAATGATG+GGG | 0.641561 | 3_2:-62767474 | None:intergenic |
| GCACTTAATGAAGCCATCGT+CGG | 0.646144 | 3_2:+62770393 | Msa0416090:CDS |
| ATGATGGGGAGAGAAAAGAA+GGG | 0.646545 | 3_2:-62767460 | None:intergenic |
| TCATCCTATTACTGAGCGTG+AGG | 0.648329 | 3_2:+62769277 | Msa0416090:CDS |
| TTTCTTCTTCATACTCAGAG+AGG | 0.657884 | 3_2:+62767997 | Msa0416090:CDS |
| AGGAGGTGCCATAACGACGA+TGG | 0.659358 | 3_2:-62767534 | None:intergenic |
| ATCACATGCCAGAAACAAGA+GGG | 0.660956 | 3_2:+62770515 | Msa0416090:CDS |
| CTGCAATTTCATGCTCGGAG+GGG | 0.661590 | 3_2:+62771616 | Msa0416090:three_prime_UTR |
| TCCGAGCATGAAATTGCAGG+AGG | 0.671178 | 3_2:-62771612 | None:intergenic |
| CCGTGCTAGAACTAGGAAGG+AGG | 0.672994 | 3_2:+62768561 | Msa0416090:CDS |
| GCAACCTGTAGACGAAAACA+TGG | 0.674646 | 3_2:+62768100 | Msa0416090:CDS |
| AATATGTGGAGGATGCAACA+AGG | 0.680326 | 3_2:+62769178 | Msa0416090:CDS |
| GGATCCAATAGAGGAAGGGG+TGG | 0.681667 | 3_2:+62768062 | Msa0416090:CDS |
| AAAGGTAAAGGAGCGCATGG+AGG | 0.686908 | 3_2:-62768810 | None:intergenic |
| TCGCATAACAGAATATGTGG+AGG | 0.700111 | 3_2:+62769167 | Msa0416090:CDS |
| CTGTTTACCAAGGATCTAGG+CGG | 0.702697 | 3_2:-62768134 | None:intergenic |
| AAAATTTACCTGTATCCGCG+GGG | 0.764166 | 3_2:-62768837 | None:intergenic |
| ATATTGATATCTGATGAAGG+AGG | 0.767738 | 3_2:-62767551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTCTTGTTTTTTATTTT+TGG | + | chr3_2:62767713-62767732 | Msa0416090:intron | 10.0% |
| !! | TTTATTTATGTATAAGTTAT+AGG | - | chr3_2:62767808-62767827 | None:intergenic | 10.0% |
| !! | CTAAATGATTACAAATAAAT+AGG | - | chr3_2:62769798-62769817 | None:intergenic | 15.0% |
| !! | AACAGAAAATCATAAATAAA+TGG | - | chr3_2:62770641-62770660 | None:intergenic | 15.0% |
| !! | GTATTAAATATTAATTACCT+CGG | - | chr3_2:62770782-62770801 | None:intergenic | 15.0% |
| !! | TAATATTTAATACACAACAA+TGG | + | chr3_2:62770789-62770808 | Msa0416090:intron | 15.0% |
| !! | GTTTATAAATATAACCTTTA+AGG | - | chr3_2:62771114-62771133 | None:intergenic | 15.0% |
| !! | ACCAAAAAATCTATACATAT+AGG | + | chr3_2:62767508-62767527 | Msa0416090:five_prime_UTR | 20.0% |
| !! | TAAATAGATATACATAAGGA+AGG | - | chr3_2:62767631-62767650 | None:intergenic | 20.0% |
| !! | AAAATTGCAACAACAAAAAA+GGG | - | chr3_2:62767959-62767978 | None:intergenic | 20.0% |
| !! | AACAATAGAAATTCTTAAAC+AGG | - | chr3_2:62768215-62768234 | None:intergenic | 20.0% |
| !! | TTATATTTATTTCCATCTCA+AGG | + | chr3_2:62768260-62768279 | Msa0416090:intron | 20.0% |
| !! | TTCAATAAATCAATATCTGA+TGG | + | chr3_2:62769099-62769118 | Msa0416090:intron | 20.0% |
| !! | TTAAAACAATACTTGTGATA+TGG | - | chr3_2:62769553-62769572 | None:intergenic | 20.0% |
| !!! | ATATCACAAGTATTGTTTTA+AGG | + | chr3_2:62769552-62769571 | Msa0416090:intron | 20.0% |
| !! | AAGAAAAACTTACATAATGA+TGG | - | chr3_2:62769606-62769625 | None:intergenic | 20.0% |
| !! | TAGTTTAAGTCATTAAATGT+CGG | + | chr3_2:62769679-62769698 | Msa0416090:intron | 20.0% |
| !! | AATGTCATAAGAAAACTATT+TGG | - | chr3_2:62769734-62769753 | None:intergenic | 20.0% |
| !! | TTATTTCCATGATCTTAAAA+AGG | - | chr3_2:62770129-62770148 | None:intergenic | 20.0% |
| !!! | CATTTTCTAATCAATTTTTG+AGG | - | chr3_2:62770725-62770744 | None:intergenic | 20.0% |
| !!! | GTACTAAATTTTTTTCAAAG+TGG | - | chr3_2:62770852-62770871 | None:intergenic | 20.0% |
| !! | TATCATTTCTCAAAATTCAT+AGG | - | chr3_2:62770874-62770893 | None:intergenic | 20.0% |
| !!! | AATTTTACACCTTAAAATTG+TGG | - | chr3_2:62770969-62770988 | None:intergenic | 20.0% |
| !! | TCATTTATCTTAATCTAATC+AGG | + | chr3_2:62771194-62771213 | Msa0416090:intron | 20.0% |
| ! | AAGAGAAAATGAAAATGATG+GGG | - | chr3_2:62767477-62767496 | None:intergenic | 25.0% |
| ! | CAAGAGAAAATGAAAATGAT+GGG | - | chr3_2:62767478-62767497 | None:intergenic | 25.0% |
| !!! | GCCTATATGTATAGATTTTT+TGG | - | chr3_2:62767512-62767531 | None:intergenic | 25.0% |
| ! | AGAATATTGATATCTGATGA+AGG | - | chr3_2:62767557-62767576 | None:intergenic | 25.0% |
| ! | AGAAAATACCATATATGCAA+GGG | - | chr3_2:62767586-62767605 | None:intergenic | 25.0% |
| ! | AAGAAAATACCATATATGCA+AGG | - | chr3_2:62767587-62767606 | None:intergenic | 25.0% |
| ! | ATACATAAGGAAGGAAAAAT+AGG | - | chr3_2:62767622-62767641 | None:intergenic | 25.0% |
| !! | GCTCTAAATAGATATACATA+AGG | - | chr3_2:62767635-62767654 | None:intergenic | 25.0% |
| !! | TATATCTATTTAGAGCTTCA+TGG | + | chr3_2:62767639-62767658 | Msa0416090:intron | 25.0% |
| ! | CAAAATTGCAACAACAAAAA+AGG | - | chr3_2:62767960-62767979 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTGTTGCAATTT+TGG | + | chr3_2:62767958-62767977 | Msa0416090:intron | 25.0% |
| !! | TTTGGCAAGATTTTCAAAAT+TGG | + | chr3_2:62768041-62768060 | Msa0416090:CDS | 25.0% |
| ! | TAATTGAATTAACCTTGAGA+TGG | - | chr3_2:62768275-62768294 | None:intergenic | 25.0% |
| !! | TTTTGAATTTTAGACTGTGT+AGG | + | chr3_2:62768356-62768375 | Msa0416090:intron | 25.0% |
| ! | ATTGTTTAGTACATTGATCT+AGG | - | chr3_2:62768422-62768441 | None:intergenic | 25.0% |
| ! | ACAATATTCTTGATGCTAAT+AGG | + | chr3_2:62768437-62768456 | Msa0416090:intron | 25.0% |
| ! | ATTGTTTAGTACATTGATCT+AGG | - | chr3_2:62768422-62768441 | None:intergenic | 25.0% |
| ! | ACAATATTCTTGATGCTAAT+AGG | + | chr3_2:62768437-62768456 | Msa0416090:intron | 25.0% |
| !! | TTATTTGCATTTTCTCGTTA+AGG | + | chr3_2:62768714-62768733 | Msa0416090:intron | 25.0% |
| ! | AATCTTGACTTATATGAAGT+TGG | - | chr3_2:62768907-62768926 | None:intergenic | 25.0% |
| ! | CAAATTCTGTTCAAATTCAA+AGG | - | chr3_2:62769009-62769028 | None:intergenic | 25.0% |
| ! | ATACTCTATGGTAATTGTTT+GGG | + | chr3_2:62769203-62769222 | Msa0416090:CDS | 25.0% |
| !! | TGTAAATAGCATGATTTTGT+CGG | - | chr3_2:62769423-62769442 | None:intergenic | 25.0% |
| ! | TTGTGAAAAAAGAAATGGAA+GGG | - | chr3_2:62769630-62769649 | None:intergenic | 25.0% |
| ! | ATTGTGAAAAAAGAAATGGA+AGG | - | chr3_2:62769631-62769650 | None:intergenic | 25.0% |
| ! | AAGAAAACTAATAACCAAGT+AGG | - | chr3_2:62769656-62769675 | None:intergenic | 25.0% |
| ! | CATTGATCAATCATATGATA+TGG | + | chr3_2:62769843-62769862 | Msa0416090:intron | 25.0% |
| !!! | CTAGTTTTCTGATATATCAA+TGG | - | chr3_2:62769881-62769900 | None:intergenic | 25.0% |
| !!! | AATATTTTTGGTTCCAATAG+GGG | - | chr3_2:62770028-62770047 | None:intergenic | 25.0% |
| !!! | CAATATTTTTGGTTCCAATA+GGG | - | chr3_2:62770029-62770048 | None:intergenic | 25.0% |
| !!! | ACAATATTTTTGGTTCCAAT+AGG | - | chr3_2:62770030-62770049 | None:intergenic | 25.0% |
| !!! | TTATCTCCTTTTTAAGATCA+TGG | + | chr3_2:62770120-62770139 | Msa0416090:intron | 25.0% |
| ! | TATGACTGAAAAACAAAGAA+TGG | - | chr3_2:62770442-62770461 | None:intergenic | 25.0% |
| !!! | ATTCTTTGTTTTTCAGTCAT+AGG | + | chr3_2:62770441-62770460 | Msa0416090:intron | 25.0% |
| ! | ATACATAGATGGTCAAAAAT+TGG | + | chr3_2:62770668-62770687 | Msa0416090:CDS | 25.0% |
| ! | GATTAGAAAATGTGAAGTTA+CGG | + | chr3_2:62770733-62770752 | Msa0416090:CDS | 25.0% |
| ! | AAGTTTCGATAACAATTAGA+TGG | + | chr3_2:62770896-62770915 | Msa0416090:intron | 25.0% |
| ! | AAGTGTTCTGATATATTTGT+GGG | + | chr3_2:62771032-62771051 | Msa0416090:intron | 25.0% |
| ! | AAGTAAGTCATGTAATACTA+AGG | - | chr3_2:62771164-62771183 | None:intergenic | 25.0% |
| ! | ATCCAAAGTTGAGAATAAAT+TGG | + | chr3_2:62771382-62771401 | Msa0416090:CDS | 25.0% |
| ! | TCCAAAGTTGAGAATAAATT+GGG | + | chr3_2:62771383-62771402 | Msa0416090:CDS | 25.0% |
| ! | AATGCAGCTGTTAATAAATA+CGG | + | chr3_2:62771473-62771492 | Msa0416090:CDS | 25.0% |
| ! | AGTAGTAGTGAATTTATACT+TGG | - | chr3_2:62771580-62771599 | None:intergenic | 25.0% |
| GCAAGAGAAAATGAAAATGA+TGG | - | chr3_2:62767479-62767498 | None:intergenic | 30.0% | |
| ATATTGATATCTGATGAAGG+AGG | - | chr3_2:62767554-62767573 | None:intergenic | 30.0% | |
| AGGAAGGAAAAATAGGAAAA+AGG | - | chr3_2:62767615-62767634 | None:intergenic | 30.0% | |
| CAAATTTCGCATATCAACAA+GGG | - | chr3_2:62767904-62767923 | None:intergenic | 30.0% | |
| TCAAATTTCGCATATCAACA+AGG | - | chr3_2:62767905-62767924 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTGCAATTTTGG+TGG | + | chr3_2:62767961-62767980 | Msa0416090:intron | 30.0% |
| !!! | TTTGTTGTTGCAATTTTGGT+GGG | + | chr3_2:62767962-62767981 | Msa0416090:intron | 30.0% |
| !!! | TCTGGTTTTATGAAATGGTT+TGG | + | chr3_2:62768023-62768042 | Msa0416090:CDS | 30.0% |
| TTCAAAATTGGATCCAATAG+AGG | + | chr3_2:62768053-62768072 | Msa0416090:CDS | 30.0% | |
| TTTCTCGTTAAGGATATAGA+TGG | + | chr3_2:62768724-62768743 | Msa0416090:intron | 30.0% | |
| ! | ACTGATGATGATTATGCAAA+AGG | + | chr3_2:62768756-62768775 | Msa0416090:CDS | 30.0% |
| ! | GTACTGATCAAAATTAGAAG+AGG | - | chr3_2:62768863-62768882 | None:intergenic | 30.0% |
| GATACTCTATGGTAATTGTT+TGG | + | chr3_2:62769202-62769221 | Msa0416090:CDS | 30.0% | |
| TGTGAAAAAAGAAATGGAAG+GGG | - | chr3_2:62769629-62769648 | None:intergenic | 30.0% | |
| GGACATTGTGAAAAAAGAAA+TGG | - | chr3_2:62769635-62769654 | None:intergenic | 30.0% | |
| !!! | TTTTTTCACAATGTCCTACT+TGG | + | chr3_2:62769639-62769658 | Msa0416090:intron | 30.0% |
| AATTGAAGTCGTCGTTAAAA+TGG | + | chr3_2:62769766-62769785 | Msa0416090:intron | 30.0% | |
| ATCAAACCAGAACCATTTAT+AGG | - | chr3_2:62769990-62770009 | None:intergenic | 30.0% | |
| ! | CATGAGATGGACAATATTTT+TGG | - | chr3_2:62770040-62770059 | None:intergenic | 30.0% |
| GTATTATCATGTTCATGAGA+TGG | - | chr3_2:62770053-62770072 | None:intergenic | 30.0% | |
| !! | TATTTTTGATTACCTTCTCC+TGG | + | chr3_2:62770187-62770206 | Msa0416090:intron | 30.0% |
| AGATACTTTAGATTGGATGA+TGG | + | chr3_2:62770225-62770244 | Msa0416090:CDS | 30.0% | |
| TCTCTAATAGCATGATAAAG+AGG | - | chr3_2:62770309-62770328 | None:intergenic | 30.0% | |
| ACTGAAAAACAAAGAATGGA+TGG | - | chr3_2:62770438-62770457 | None:intergenic | 30.0% | |
| AAGCAATTAGCAAGAGTAAA+AGG | - | chr3_2:62770476-62770495 | None:intergenic | 30.0% | |
| ! | TTTTACTCTTGCTAATTGCT+TGG | + | chr3_2:62770475-62770494 | Msa0416090:intron | 30.0% |
| !! | AGGTATTGAAAATCATACAC+TGG | - | chr3_2:62770569-62770588 | None:intergenic | 30.0% |
| TCTGATAAAACAAAAGCAGA+AGG | - | chr3_2:62770589-62770608 | None:intergenic | 30.0% | |
| !! | TGTTGTTTCAGATACATAGA+TGG | + | chr3_2:62770657-62770676 | Msa0416090:intron | 30.0% |
| CAAGTGTTCTGATATATTTG+TGG | + | chr3_2:62771031-62771050 | Msa0416090:intron | 30.0% | |
| ACCCAATTTATTCTCAACTT+TGG | - | chr3_2:62771387-62771406 | None:intergenic | 30.0% | |
| GAAGTTGTTCTTATTACAGT+GGG | - | chr3_2:62771541-62771560 | None:intergenic | 30.0% | |
| AGAAGTTGTTCTTATTACAG+TGG | - | chr3_2:62771542-62771561 | None:intergenic | 30.0% | |
| AGTTCTCTAATATCGCATCA+CGG | - | chr3_2:62767758-62767777 | None:intergenic | 35.0% | |
| TTTCTTCTTCATACTCAGAG+AGG | + | chr3_2:62767997-62768016 | Msa0416090:CDS | 35.0% | |
| !!! | GGAAGTCTGGTTTTATGAAA+TGG | + | chr3_2:62768018-62768037 | Msa0416090:CDS | 35.0% |
| AAATTGGATCCAATAGAGGA+AGG | + | chr3_2:62768057-62768076 | Msa0416090:CDS | 35.0% | |
| AATTGGATCCAATAGAGGAA+GGG | + | chr3_2:62768058-62768077 | Msa0416090:CDS | 35.0% | |
| AAAGCAGATAGTTGAGTCAT+TGG | - | chr3_2:62768162-62768181 | None:intergenic | 35.0% | |
| GAAGATTTAAAGATACCAGC+AGG | + | chr3_2:62768622-62768641 | Msa0416090:CDS | 35.0% | |
| ATTTAAAGATACCAGCAGGT+AGG | + | chr3_2:62768626-62768645 | Msa0416090:intron | 35.0% | |
| TTAAGGATATAGATGGCGAA+CGG | + | chr3_2:62768731-62768750 | Msa0416090:intron | 35.0% | |
| TTGACTTATATGAAGTTGGC+TGG | - | chr3_2:62768903-62768922 | None:intergenic | 35.0% | |
| ! | ATTTTCATCCAGACTGCTTT+CGG | + | chr3_2:62769240-62769259 | Msa0416090:CDS | 35.0% |
| ! | CCTCTTTTATCCATCTCTTA+CGG | + | chr3_2:62769483-62769502 | Msa0416090:intron | 35.0% |
| CTTGGATCAACAGAAACAAA+AGG | - | chr3_2:62769509-62769528 | None:intergenic | 35.0% | |
| ! | TGATCCAAGTTTTCTTTGTC+AGG | + | chr3_2:62769520-62769539 | Msa0416090:intron | 35.0% |
| ! | GATCCAAGTTTTCTTTGTCA+GGG | + | chr3_2:62769521-62769540 | Msa0416090:intron | 35.0% |
| TGATGGCAAACTTCACATTT+AGG | - | chr3_2:62769589-62769608 | None:intergenic | 35.0% | |
| CACTTGCAGATACCTATAAA+TGG | + | chr3_2:62769975-62769994 | Msa0416090:intron | 35.0% | |
| CAGATACCTATAAATGGTTC+TGG | + | chr3_2:62769981-62770000 | Msa0416090:intron | 35.0% | |
| !! | GTTCTGGTTTGATTGAGTAT+AGG | + | chr3_2:62769997-62770016 | Msa0416090:CDS | 35.0% |
| TTGTAGCTGTGAAAGATTAG+AGG | + | chr3_2:62770082-62770101 | Msa0416090:CDS | 35.0% | |
| !! | ACTTTAGATTGGATGATGGA+CGG | + | chr3_2:62770229-62770248 | Msa0416090:CDS | 35.0% |
| !! | GATTTTGTGCTTTGAATGCA+TGG | + | chr3_2:62770251-62770270 | Msa0416090:CDS | 35.0% |
| GAATCTGCTATAACAGATAC+CGG | + | chr3_2:62770273-62770292 | Msa0416090:CDS | 35.0% | |
| GCTATTAGAGACTATTACGA+AGG | + | chr3_2:62770318-62770337 | Msa0416090:CDS | 35.0% | |
| TAATTGCTTGGTTTCTACCA+GGG | + | chr3_2:62770487-62770506 | Msa0416090:intron | 35.0% | |
| CATAGATGGTCAAAAATTGG+AGG | + | chr3_2:62770671-62770690 | Msa0416090:CDS | 35.0% | |
| ! | ATTGGAGGTCATCGATTAAT+AGG | + | chr3_2:62770686-62770705 | Msa0416090:CDS | 35.0% |
| ! | TTGGAGGTCATCGATTAATA+GGG | + | chr3_2:62770687-62770706 | Msa0416090:CDS | 35.0% |
| ACGGCTATTCTTGTTCTTTA+TGG | + | chr3_2:62770752-62770771 | Msa0416090:CDS | 35.0% | |
| ATAAGCTGGAGAAGAATCAT+TGG | - | chr3_2:62771432-62771451 | None:intergenic | 35.0% | |
| AATGATTCTTCTCCAGCTTA+TGG | + | chr3_2:62771431-62771450 | Msa0416090:CDS | 35.0% | |
| ! | CTTCTCTGAGAAGTTTGAAT+TGG | + | chr3_2:62771557-62771576 | Msa0416090:three_prime_UTR | 35.0% |
| ! | ATGATGGGGAGAGAAAAGAA+GGG | - | chr3_2:62767463-62767482 | None:intergenic | 40.0% |
| ! | AATGATGGGGAGAGAAAAGA+AGG | - | chr3_2:62767464-62767483 | None:intergenic | 40.0% |
| CTTTCACACCCTTGCATATA+TGG | + | chr3_2:62767575-62767594 | Msa0416090:CDS | 40.0% | |
| ATTGGATCCAATAGAGGAAG+GGG | + | chr3_2:62768059-62768078 | Msa0416090:CDS | 40.0% | |
| GTTCTGTTTACCAAGGATCT+AGG | - | chr3_2:62768140-62768159 | None:intergenic | 40.0% | |
| !! | GTCATTGGTTCTGTTTACCA+AGG | - | chr3_2:62768147-62768166 | None:intergenic | 40.0% |
| TGTTGTTGCACATGTCAAGT+TGG | + | chr3_2:62768231-62768250 | Msa0416090:intron | 40.0% | |
| CGAACTGTTTGCATTTCGAA+CGG | - | chr3_2:62768322-62768341 | None:intergenic | 40.0% | |
| CGTTCGAAATGCAAACAGTT+CGG | + | chr3_2:62768320-62768339 | Msa0416090:intron | 40.0% | |
| GAAAATTAGTACCTACCTGC+TGG | - | chr3_2:62768640-62768659 | None:intergenic | 40.0% | |
| TAAGGATATAGATGGCGAAC+GGG | + | chr3_2:62768732-62768751 | Msa0416090:intron | 40.0% | |
| TGATTATGCAAAAGGACTCC+AGG | + | chr3_2:62768764-62768783 | Msa0416090:CDS | 40.0% | |
| ! | TAAAAAGGTAAAGGAGCGCA+TGG | - | chr3_2:62768816-62768835 | None:intergenic | 40.0% |
| AAAATTTACCTGTATCCGCG+GGG | - | chr3_2:62768840-62768859 | None:intergenic | 40.0% | |
| GAAAATTTACCTGTATCCGC+GGG | - | chr3_2:62768841-62768860 | None:intergenic | 40.0% | |
| GGAAAATTTACCTGTATCCG+CGG | - | chr3_2:62768842-62768861 | None:intergenic | 40.0% | |
| CCACATATTCTGTTATGCGA+TGG | - | chr3_2:62769167-62769186 | None:intergenic | 40.0% | |
| CCATCGCATAACAGAATATG+TGG | + | chr3_2:62769164-62769183 | Msa0416090:CDS | 40.0% | |
| TCGCATAACAGAATATGTGG+AGG | + | chr3_2:62769167-62769186 | Msa0416090:CDS | 40.0% | |
| AATATGTGGAGGATGCAACA+AGG | + | chr3_2:62769178-62769197 | Msa0416090:CDS | 40.0% | |
| TGCAACAAGGAGATACTCTA+TGG | + | chr3_2:62769191-62769210 | Msa0416090:CDS | 40.0% | |
| AATACCTCACGCTCAGTAAT+AGG | - | chr3_2:62769284-62769303 | None:intergenic | 40.0% | |
| CCGTAAGAGATGGATAAAAG+AGG | - | chr3_2:62769486-62769505 | None:intergenic | 40.0% | |
| AAACAAAAGGCCGTAAGAGA+TGG | - | chr3_2:62769496-62769515 | None:intergenic | 40.0% | |
| CTTCCCTGACAAAGAAAACT+TGG | - | chr3_2:62769527-62769546 | None:intergenic | 40.0% | |
| GGCAAACTTCACATTTAGGA+TGG | - | chr3_2:62769585-62769604 | None:intergenic | 40.0% | |
| GGGCGAAAGATACTTTAGAT+TGG | + | chr3_2:62770218-62770237 | Msa0416090:CDS | 40.0% | |
| ATAAAGAGGCTGACATTCAC+CGG | - | chr3_2:62770295-62770314 | None:intergenic | 40.0% | |
| CAAATTCCCATGCTTCTAGT+TGG | + | chr3_2:62770363-62770382 | Msa0416090:CDS | 40.0% | |
| ! | TCTCTTCCAACTAGAAGCAT+GGG | - | chr3_2:62770372-62770391 | None:intergenic | 40.0% |
| TTCTCTTCCAACTAGAAGCA+TGG | - | chr3_2:62770373-62770392 | None:intergenic | 40.0% | |
| CTAATTGCTTGGTTTCTACC+AGG | + | chr3_2:62770486-62770505 | Msa0416090:intron | 40.0% | |
| ATCACATGCCAGAAACAAGA+GGG | + | chr3_2:62770515-62770534 | Msa0416090:CDS | 40.0% | |
| TGACAGTCTGTTCTTCTGAA+AGG | - | chr3_2:62770546-62770565 | None:intergenic | 40.0% | |
| TTGTTCTTTATGGTCTTCCG+AGG | + | chr3_2:62770762-62770781 | Msa0416090:CDS | 40.0% | |
| CAAAGTGGATCATCTGTAGT+TGG | - | chr3_2:62770837-62770856 | None:intergenic | 40.0% | |
| AAAATCATGCGTTGAGTGGA+TGG | - | chr3_2:62770937-62770956 | None:intergenic | 40.0% | |
| GTTCAAAATCATGCGTTGAG+TGG | - | chr3_2:62770941-62770960 | None:intergenic | 40.0% | |
| ! | TCAACGCATGATTTTGAACG+TGG | + | chr3_2:62770942-62770961 | Msa0416090:intron | 40.0% |
| ! | GAACGTGGACCACAATTTTA+AGG | + | chr3_2:62770957-62770976 | Msa0416090:intron | 40.0% |
| TCTGATATATTTGTGGGTGC+AGG | + | chr3_2:62771038-62771057 | Msa0416090:intron | 40.0% | |
| GTCAGGTTCTTTCTTACATG+TGG | + | chr3_2:62771255-62771274 | Msa0416090:CDS | 40.0% | |
| CTTGAAGCAGAAGTTATGTC+AGG | + | chr3_2:62771278-62771297 | Msa0416090:CDS | 40.0% | |
| TTTCTTTGATGAGTAGGAGG+CGG | - | chr3_2:62771354-62771373 | None:intergenic | 40.0% | |
| GAGAAGAATCATTGGCAATC+TGG | - | chr3_2:62771424-62771443 | None:intergenic | 40.0% | |
| CTTGACCATATTCGTTTGAC+TGG | + | chr3_2:62771509-62771528 | Msa0416090:CDS | 40.0% | |
| ACTGACCAGTCAAACGAATA+TGG | - | chr3_2:62771517-62771536 | None:intergenic | 40.0% | |
| ATAGGCTTCCATCGTCGTTA+TGG | + | chr3_2:62767526-62767545 | Msa0416090:exon | 45.0% | |
| !! | TTGCAATTTTGGTGGGAAGC+AGG | + | chr3_2:62767969-62767988 | Msa0416090:intron | 45.0% |
| !! | TGCAATTTTGGTGGGAAGCA+GGG | + | chr3_2:62767970-62767989 | Msa0416090:intron | 45.0% |
| TCATACTCAGAGAGGAAGTC+TGG | + | chr3_2:62768005-62768024 | Msa0416090:CDS | 45.0% | |
| GCAACCTGTAGACGAAAACA+TGG | + | chr3_2:62768100-62768119 | Msa0416090:CDS | 45.0% | |
| ! | CAAGCCATGTTTTCGTCTAC+AGG | - | chr3_2:62768107-62768126 | None:intergenic | 45.0% |
| CTGTAGACGAAAACATGGCT+TGG | + | chr3_2:62768105-62768124 | Msa0416090:CDS | 45.0% | |
| CTGTTTACCAAGGATCTAGG+CGG | - | chr3_2:62768137-62768156 | None:intergenic | 45.0% | |
| AGGATAACCGTGCTAGAACT+AGG | + | chr3_2:62768457-62768476 | Msa0416090:intron | 45.0% | |
| TAACCGTGCTAGAACTAGGA+AGG | + | chr3_2:62768461-62768480 | Msa0416090:intron | 45.0% | |
| TAGAACTAGGAAGGAGGAAG+AGG | + | chr3_2:62768470-62768489 | Msa0416090:intron | 45.0% | |
| AGGATAACCGTGCTAGAACT+AGG | + | chr3_2:62768457-62768476 | Msa0416090:intron | 45.0% | |
| TAACCGTGCTAGAACTAGGA+AGG | + | chr3_2:62768461-62768480 | Msa0416090:intron | 45.0% | |
| TAGAACTAGGAAGGAGGAAG+AGG | + | chr3_2:62768470-62768489 | Msa0416090:intron | 45.0% | |
| ! | CCTTTACCTTTTTATCCCCG+CGG | + | chr3_2:62768822-62768841 | Msa0416090:CDS | 45.0% |
| TCATCCTATTACTGAGCGTG+AGG | + | chr3_2:62769277-62769296 | Msa0416090:CDS | 45.0% | |
| GCCTCAACACACATTTACAC+AGG | + | chr3_2:62769357-62769376 | Msa0416090:intron | 45.0% | |
| GCCTGTGTAAATGTGTGTTG+AGG | - | chr3_2:62769361-62769380 | None:intergenic | 45.0% | |
| ! | AGTATAGGTGTCACCCCTAT+TGG | + | chr3_2:62770012-62770031 | Msa0416090:CDS | 45.0% |
| TTACCTTCTCCTGGAAGTCT+CGG | + | chr3_2:62770196-62770215 | Msa0416090:intron | 45.0% | |
| GCACTTAATGAAGCCATCGT+CGG | + | chr3_2:62770393-62770412 | Msa0416090:CDS | 45.0% | |
| TACATTCTTCTCTCCGACGA+TGG | - | chr3_2:62770409-62770428 | None:intergenic | 45.0% | |
| !! | CTCTTGTTTCTGGCATGTGA+TGG | - | chr3_2:62770516-62770535 | None:intergenic | 45.0% |
| CATCACATGCCAGAAACAAG+AGG | + | chr3_2:62770514-62770533 | Msa0416090:CDS | 45.0% | |
| ! | AGGCATAACCCTCTTGTTTC+TGG | - | chr3_2:62770526-62770545 | None:intergenic | 45.0% |
| CATGCATTAACTCGTGTGCA+AGG | - | chr3_2:62771081-62771100 | None:intergenic | 45.0% | |
| CTTGCACACGAGTTAATGCA+TGG | + | chr3_2:62771079-62771098 | Msa0416090:CDS | 45.0% | |
| CACACGAGTTAATGCATGGT+TGG | + | chr3_2:62771083-62771102 | Msa0416090:CDS | 45.0% | |
| ! | CATGGTTGGTTACGCCTTAA+AGG | + | chr3_2:62771097-62771116 | Msa0416090:CDS | 45.0% |
| ! | AGTAGAGGAAGGTATGTGTC+AGG | + | chr3_2:62771238-62771257 | Msa0416090:CDS | 45.0% |
| GGTAGAAGAAGAAGAAGCTG+CGG | - | chr3_2:62771330-62771349 | None:intergenic | 45.0% | |
| GCCTCCTACTCATCAAAGAA+AGG | + | chr3_2:62771353-62771372 | Msa0416090:CDS | 45.0% | |
| GCCTTTCTTTGATGAGTAGG+AGG | - | chr3_2:62771357-62771376 | None:intergenic | 45.0% | |
| GATTCTTCTCCAGCTTATGG+CGG | + | chr3_2:62771434-62771453 | Msa0416090:CDS | 45.0% | |
| TCCTCCTGCAATTTCATGCT+CGG | + | chr3_2:62771611-62771630 | Msa0416090:three_prime_UTR | 45.0% | |
| !! | GCAATTTTGGTGGGAAGCAG+GGG | + | chr3_2:62767971-62767990 | Msa0416090:intron | 50.0% |
| !! | CCTCCTTCCTAGTTCTAGCA+CGG | - | chr3_2:62768467-62768486 | None:intergenic | 50.0% |
| !! | CCTCCTTCCTAGTTCTAGCA+CGG | - | chr3_2:62768467-62768486 | None:intergenic | 50.0% |
| ! | AAGGTAAAGGAGCGCATGGA+GGG | - | chr3_2:62768812-62768831 | None:intergenic | 50.0% |
| ! | AAAGGTAAAGGAGCGCATGG+AGG | - | chr3_2:62768813-62768832 | None:intergenic | 50.0% |
| CCGCGGGGATAAAAAGGTAA+AGG | - | chr3_2:62768825-62768844 | None:intergenic | 50.0% | |
| CTGTATCCGCGGGGATAAAA+AGG | - | chr3_2:62768831-62768850 | None:intergenic | 50.0% | |
| ! | CTTTTTATCCCCGCGGATAC+AGG | + | chr3_2:62768829-62768848 | Msa0416090:CDS | 50.0% |
| TACCTTCTCCTGGAAGTCTC+GGG | + | chr3_2:62770197-62770216 | Msa0416090:intron | 50.0% | |
| CTACTGCAGGATCAAGGTTG+CGG | - | chr3_2:62771223-62771242 | None:intergenic | 50.0% | |
| CAACCTTGATCCTGCAGTAG+AGG | + | chr3_2:62771223-62771242 | Msa0416090:CDS | 50.0% | |
| CTTCCTCTACTGCAGGATCA+AGG | - | chr3_2:62771229-62771248 | None:intergenic | 50.0% | |
| CTTGATCCTGCAGTAGAGGA+AGG | + | chr3_2:62771227-62771246 | Msa0416090:CDS | 50.0% | |
| CACATACCTTCCTCTACTGC+AGG | - | chr3_2:62771236-62771255 | None:intergenic | 50.0% | |
| CGCGCCTTTCTTTGATGAGT+AGG | - | chr3_2:62771360-62771379 | None:intergenic | 50.0% | |
| TCCGAGCATGAAATTGCAGG+AGG | - | chr3_2:62771615-62771634 | None:intergenic | 50.0% | |
| TCCTGCAATTTCATGCTCGG+AGG | + | chr3_2:62771614-62771633 | Msa0416090:three_prime_UTR | 50.0% | |
| CCTGCAATTTCATGCTCGGA+GGG | + | chr3_2:62771615-62771634 | Msa0416090:three_prime_UTR | 50.0% | |
| CTGCAATTTCATGCTCGGAG+GGG | + | chr3_2:62771616-62771635 | Msa0416090:three_prime_UTR | 50.0% | |
| AATTTCATGCTCGGAGGGGA+AGG | + | chr3_2:62771620-62771639 | Msa0416090:three_prime_UTR | 50.0% | |
| !! | AGGAGGTGCCATAACGACGA+TGG | - | chr3_2:62767537-62767556 | None:intergenic | 55.0% |
| GGATCCAATAGAGGAAGGGG+TGG | + | chr3_2:62768062-62768081 | Msa0416090:CDS | 55.0% | |
| TCCAATAGAGGAAGGGGTGG+CGG | + | chr3_2:62768065-62768084 | Msa0416090:CDS | 55.0% | |
| CCGTGCTAGAACTAGGAAGG+AGG | + | chr3_2:62768464-62768483 | Msa0416090:intron | 55.0% | |
| CCGTGCTAGAACTAGGAAGG+AGG | + | chr3_2:62768464-62768483 | Msa0416090:intron | 55.0% | |
| GAGATGAGTGCATGCGATCC+TGG | - | chr3_2:62768785-62768804 | None:intergenic | 55.0% | |
| GAGTGACACCGAAAGCAGTC+TGG | - | chr3_2:62769251-62769270 | None:intergenic | 55.0% | |
| ACCTTCTCCTGGAAGTCTCG+GGG | + | chr3_2:62770198-62770217 | Msa0416090:intron | 55.0% | |
| ! | CTGGCATGTGATGGAAACCC+TGG | - | chr3_2:62770507-62770526 | None:intergenic | 55.0% |
| TGTGGGTGCAGGTTACTCAC+AGG | + | chr3_2:62771049-62771068 | Msa0416090:intron | 55.0% | |
| GAAGCTGCGGCTGATGTTGA+TGG | - | chr3_2:62771317-62771336 | None:intergenic | 55.0% | |
| CTTTGATGAGTAGGAGGCGG+AGG | - | chr3_2:62771351-62771370 | None:intergenic | 55.0% | |
| TCTTCTCCAGCTTATGGCGG+AGG | + | chr3_2:62771437-62771456 | Msa0416090:CDS | 55.0% | |
| CTAAAGCCTCCGCCATAAGC+TGG | - | chr3_2:62771446-62771465 | None:intergenic | 55.0% | |
| ! | CAGCTTATGGCGGAGGCTTT+AGG | + | chr3_2:62771444-62771463 | Msa0416090:CDS | 55.0% |
| CCCTCCGAGCATGAAATTGC+AGG | - | chr3_2:62771618-62771637 | None:intergenic | 55.0% | |
| ACCGCCACCCCTTCCTCTAT+TGG | - | chr3_2:62768069-62768088 | None:intergenic | 60.0% | |
| TCTTTCGCCCCGAGACTTCC+AGG | - | chr3_2:62770208-62770227 | None:intergenic | 60.0% | |
| GCGAGCTCCGCCTAGATCCT+TGG | + | chr3_2:62768127-62768146 | Msa0416090:CDS | 65.0% | |
| GCCCCGAGACTTCCAGGAGA+AGG | - | chr3_2:62770202-62770221 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 62767449 | 62771711 | 62767449 | ID=Msa0416090;Name=Msa0416090 |
| chr3_2 | mRNA | 62767449 | 62771711 | 62767449 | ID=Msa0416090-mRNA-1;Parent=Msa0416090;Name=Msa0416090-mRNA-1;_AED=0.17;_eAED=0.17;_QI=96|0.9|1|1|1|1|11|164|484 |
| chr3_2 | exon | 62767449 | 62767596 | 62767449 | ID=Msa0416090-mRNA-1:exon:13570;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62767991 | 62768148 | 62767991 | ID=Msa0416090-mRNA-1:exon:13571;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62768556 | 62768643 | 62768556 | ID=Msa0416090-mRNA-1:exon:13572;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62768736 | 62768850 | 62768736 | ID=Msa0416090-mRNA-1:exon:13573;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62769160 | 62769298 | 62769160 | ID=Msa0416090-mRNA-1:exon:13574;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62769984 | 62770103 | 62769984 | ID=Msa0416090-mRNA-1:exon:13575;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62770213 | 62770425 | 62770213 | ID=Msa0416090-mRNA-1:exon:13576;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62770508 | 62770570 | 62770508 | ID=Msa0416090-mRNA-1:exon:13577;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62770668 | 62770783 | 62770668 | ID=Msa0416090-mRNA-1:exon:13578;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62771060 | 62771118 | 62771060 | ID=Msa0416090-mRNA-1:exon:13579;Parent=Msa0416090-mRNA-1 |
| chr3_2 | exon | 62771216 | 62771711 | 62771216 | ID=Msa0416090-mRNA-1:exon:13580;Parent=Msa0416090-mRNA-1 |
| chr3_2 | five_prime_UTR | 62767449 | 62767544 | 62767449 | ID=Msa0416090-mRNA-1:five_prime_utr;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62767545 | 62767596 | 62767545 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62767991 | 62768148 | 62767991 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62768556 | 62768643 | 62768556 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62768736 | 62768850 | 62768736 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62769160 | 62769298 | 62769160 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62769984 | 62770103 | 62769984 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62770213 | 62770425 | 62770213 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62770508 | 62770570 | 62770508 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62770668 | 62770783 | 62770668 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62771060 | 62771118 | 62771060 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | CDS | 62771216 | 62771547 | 62771216 | ID=Msa0416090-mRNA-1:cds;Parent=Msa0416090-mRNA-1 |
| chr3_2 | three_prime_UTR | 62771548 | 62771711 | 62771548 | ID=Msa0416090-mRNA-1:three_prime_utr;Parent=Msa0416090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
