AlfalfaGEDB | Msa0462740

M. sativa cultivar zhongmu-4 / Msa0462740

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0008150 GO:0009888 GO:0010087 GO:0010088 GO:0022622 GO:0032182 GO:0032501 GO:0032502 GO:0043130 GO:0048364 GO:0048731 GO:0048856 GO:0099402
PFAM: PF00412.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462740	XP_003600792.2	92.039	515	9	4	1	485	1	513	0.0	966

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462740	sp\|Q0WSN2\|DAR2_ARATH	60.583	515	159	7	8	485	21	528	0.0	585

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462740	G7JA19	92.039	515	9	4	1	485	1	513	0.0	966

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TFs/TRs:

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Gene ID	Type	Classification
Msa0462740	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037180	Msa0462740	-0.800779	1.227927e-48	-8.615850e-47
Msa0090350	Msa0462740	0.803375	3.592623e-49	-8.615850e-47
Msa0092220	Msa0462740	-0.801201	1.006821e-48	-8.615850e-47
Msa0160650	Msa0462740	0.817302	3.538030e-52	-8.615850e-47
Msa0226450	Msa0462740	0.800867	1.178077e-48	-8.615850e-47
Msa0368790	Msa0462740	0.850400	1.739771e-60	-8.615850e-47
Msa0416090	Msa0462740	0.883046	6.250178e-71	-8.615850e-47
Msa0462740	Msa0508330	0.880669	4.537455e-70	-8.615850e-47
Msa0462740	Msa0526520	0.828454	8.908449e-55	-8.615850e-47
Msa0462740	Msa0571900	0.812304	4.534070e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462740	MtrunA17_Chr3g0112601	92.039	515	9	4	1	485	1	513	0.0	966
Msa0462740	MtrunA17_Chr5g0436051	68.859	517	116	7	1	485	113	616	0.0	680
Msa0462740	MtrunA17_Chr8g0373781	52.349	447	174	6	72	484	90	531	6.96e-142	417
Msa0462740	MtrunA17_Chr1g0154501	48.073	493	190	13	33	484	1	468	8.39e-142	415
Msa0462740	MtrunA17_Chr5g0403301	57.475	301	105	3	186	484	27	306	1.48e-110	329
Msa0462740	MtrunA17_Chr5g0403271	67.320	153	50	0	332	484	1	153	1.29e-60	195
Msa0462740	MtrunA17_Chr5g0403261	36.022	372	124	10	33	296	1	366	3.46e-57	194

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0462740	AT2G39830.1	60.583	515	159	7	8	485	21	528	0.0	585
Msa0462740	AT2G39830.2	60.232	518	159	8	8	485	21	531	0.0	579
Msa0462740	AT2G39830.3	59.806	515	154	8	8	485	21	519	0.0	570
Msa0462740	AT2G39830.4	57.673	404	131	5	8	376	21	419	5.23e-156	451
Msa0462740	AT1G19270.1	44.712	539	205	7	33	485	1	532	3.85e-146	429
Msa0462740	AT1G19270.2	44.712	539	205	7	33	485	1	532	3.85e-146	429
Msa0462740	AT4G36860.1	53.394	442	154	6	75	484	132	553	5.60e-145	427
Msa0462740	AT4G36860.3	53.394	442	154	6	75	484	156	577	8.06e-145	427
Msa0462740	AT4G36860.2	50.599	334	116	5	75	376	132	448	1.15e-103	317
Msa0462740	AT5G66620.1	40.042	477	229	10	36	477	186	640	5.05e-102	319

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Find 131 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTACCTGTATCCGCG+GGG	0.764166	3_3:-61901719	None:intergenic
AAAGGTAAAGGAGCGCATGG+AGG	0.686908	3_3:-61901692	None:intergenic
AAATTGGATCCAATAGAGGA+AGG	0.570246	3_3:+61901036	Msa0462740:CDS
AAGAAAATACCATATATGCA+AGG	0.562532	3_3:-61900568	None:intergenic
AAGAGAAAATGAAAATGATG+GGG	0.641561	3_3:-61900458	None:intergenic
AAGGTAAAGGAGCGCATGGA+GGG	0.580876	3_3:-61901691	None:intergenic
AATACCTCACGCTCAGTAAT+AGG	0.302681	3_3:-61902246	None:intergenic
AATATGTGGAGGATGCAACA+AGG	0.680326	3_3:+61902143	Msa0462740:CDS
AATGATGGGGAGAGAAAAGA+AGG	0.481215	3_3:-61900445	None:intergenic
AATGATTCTTCTCCAGCTTA+TGG	0.306927	3_3:+61904403	Msa0462740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAAGAGAAAATGAAAATGA+TGG	-	chr3_3:61900463-61900482	None:intergenic	30.0%
ATATTGATATCTGATGAAGG+AGG	-	chr3_3:61900538-61900557	None:intergenic	30.0%
AGGAAGGAAAAATAGGAAAA+AGG	-	chr3_3:61900599-61900618	None:intergenic	30.0%
CAAATTTCGCATATCAACAA+GGG	-	chr3_3:61900883-61900902	None:intergenic	30.0%
TCAAATTTCGCATATCAACA+AGG	-	chr3_3:61900884-61900903	None:intergenic	30.0%
TTCAAAATTGGATCCAATAG+AGG	+	chr3_3:61901032-61901051	Msa0462740:CDS	30.0%
TTTCTCGTTAAGGATATAGA+TGG	+	chr3_3:61901606-61901625	Msa0462740:intron	30.0%
GATACTCTATGGTAATTGTT+TGG	+	chr3_3:61902167-61902186	Msa0462740:CDS	30.0%
TGTGAAAAAAGAAATGGAAG+GGG	-	chr3_3:61902594-61902613	None:intergenic	30.0%
GGACATTGTGAAAAAAGAAA+TGG	-	chr3_3:61902600-61902619	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	61900433	61904683	61900433	ID=Msa0462740;Name=Msa0462740
chr3_3	mRNA	61900433	61904683	61900433	ID=Msa0462740-mRNA-1;Parent=Msa0462740;Name=Msa0462740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=96\|0.8\|0.90\|1\|0.9\|0.90\|11\|164\|485
chr3_3	exon	61900433	61900580	61900433	ID=Msa0462740-mRNA-1:exon:13178;Parent=Msa0462740-mRNA-1
chr3_3	exon	61900967	61901127	61900967	ID=Msa0462740-mRNA-1:exon:13179;Parent=Msa0462740-mRNA-1
chr3_3	exon	61901438	61901525	61901438	ID=Msa0462740-mRNA-1:exon:13180;Parent=Msa0462740-mRNA-1
chr3_3	exon	61901618	61901732	61901618	ID=Msa0462740-mRNA-1:exon:13181;Parent=Msa0462740-mRNA-1
chr3_3	exon	61902125	61902263	61902125	ID=Msa0462740-mRNA-1:exon:13182;Parent=Msa0462740-mRNA-1
chr3_3	exon	61902949	61903068	61902949	ID=Msa0462740-mRNA-1:exon:13183;Parent=Msa0462740-mRNA-1
chr3_3	exon	61903178	61903390	61903178	ID=Msa0462740-mRNA-1:exon:13184;Parent=Msa0462740-mRNA-1
chr3_3	exon	61903473	61903535	61903473	ID=Msa0462740-mRNA-1:exon:13185;Parent=Msa0462740-mRNA-1
chr3_3	exon	61903633	61903748	61903633	ID=Msa0462740-mRNA-1:exon:13186;Parent=Msa0462740-mRNA-1
chr3_3	exon	61904035	61904093	61904035	ID=Msa0462740-mRNA-1:exon:13187;Parent=Msa0462740-mRNA-1
chr3_3	exon	61904188	61904683	61904188	ID=Msa0462740-mRNA-1:exon:13188;Parent=Msa0462740-mRNA-1
chr3_3	five_prime_UTR	61900433	61900528	61900433	ID=Msa0462740-mRNA-1:five_prime_utr;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61900529	61900580	61900529	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61900967	61901127	61900967	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61901438	61901525	61901438	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61901618	61901732	61901618	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61902125	61902263	61902125	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61902949	61903068	61902949	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61903178	61903390	61903178	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61903473	61903535	61903473	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61903633	61903748	61903633	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61904035	61904093	61904035	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	CDS	61904188	61904519	61904188	ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1
chr3_3	three_prime_UTR	61904520	61904683	61904520	ID=Msa0462740-mRNA-1:three_prime_utr;Parent=Msa0462740-mRNA-1

Gene Sequence

>Msa0462740

ATGGCACCTCCTTCATCAGATATCAATATTCTTTCACACCCTTGCATATATGCAGGGGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGAAAGATTTTCAAAATTGGATCCAATAGAGGAAGGGGTGGCGGTCATCTTTTACAGCAACCTGTAGACGAAAACATGGCTTGGCGAGCTCCGCCTAGATCCTTGGATAACCGTGCTAGAACTAGGAAGGAGGAAGAGGATTTAAACAAAGCAATTGCACTTTCTTTAAGTGAAGATTTAAAGATACCAGCAGGATATAGATGGCGAACGGGAACTGATGATGATTATGCAAAAGGACTCCAGGATCGCATGCACTCATCTCTACACCCTCCATGCGCTCCTTTACCTTTTTATCCCCGCGGATACAGCATGCCATCGCATAACAGAATATGTGGAGGATGCAACAAGGAGATACTCTATGGTAATTGTTTGGGAGTCGAACATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCATGTCATCATCCTATTACTGAGCGTGAGATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGTGTCACCCCTATTGGAACCAAAAATATTGTCCATCTCATGAACATGATAATACATCTCGCTGTTGTAGCTGTGAAAGATTAGAGTCTCGGGGCGAAAGATACTTTAGATTGGATGATGGACGGATTTTGTGCTTTGAATGCATGGAATCTGCTATAACAGATACTGGTGAATGTCAGCCTCTTTATCATGCTATTAGAGACTATTACGAAGGAATGAATATGAGAATCGATCAACAAATCCCCATGCTTCTAGTTGGAAGAGAAGCACTTAATGAAGCCATCGTCGGAGAGAAGAATGGTTTCCATCACATGCCAGAAACAAGAGGGTTATGCCTTTCAGAAGAACAGACTGTCACCAGTATACATAGATGGTCAAAAATTGGAGGTCATCGATTAATAGGGATGCGCAGTCAACCTCAAAAATTGATTAGAAAATGTGAAGTTACGGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTGACAGGTGCTATCCTTGCACACGAATTGATGCATGGTTGGTTACGCCTCAAAGGTTACCGCAACCTTGATCCTGCAGTCGAGGAAGGTATGTGTCAGGTTCTTTCTTACATGTGGCTTGAAGCAGAAGTTATGTCAGGTTCTAGAAACATGCCATCAACATCAGCCGCAGCTTCTTCTTCTTCTACCTCCGCCTCCTACTCGTCAAAGAAAGGCGCGATATCCAAAGTTGAGAATAAATTGGGTGAATTTTTCATGAACCAGATTGCCAATGATTCTTCTCCAGCTTATGGTGGAGGCTTTAGGTCAGCTAATGCAGCTGTTAATAAATACGGTTTACGTTGTACTCTCGACCATATTCGTTTGACTGGTCAGTTCCCACTGTAA

Protein sequence

>Msa0462740

MAPPSSDINILSHPCIYAGDFSSSYSERKSGFMKWFGKIFKIGSNRGRGGGHLLQQPVDENMAWRAPPRSLDNRARTRKEEEDLNKAIALSLSEDLKIPAGYRWRTGTDDDYAKGLQDRMHSSLHPPCAPLPFYPRGYSMPSHNRICGGCNKEILYGNCLGVEHSYFHPDCFRCHSCHHPITEREIPINGSGLIEYRCHPYWNQKYCPSHEHDNTSRCCSCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGFHHMPETRGLCLSEEQTVTSIHRWSKIGGHRLIGMRSQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGMCQVLSYMWLEAEVMSGSRNMPSTSAAASSSSTSASYSSKKGAISKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRCTLDHIRLTGQFPL*