Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462740 | XP_003600792.2 | 92.039 | 515 | 9 | 4 | 1 | 485 | 1 | 513 | 0.0 | 966 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462740 | sp|Q0WSN2|DAR2_ARATH | 60.583 | 515 | 159 | 7 | 8 | 485 | 21 | 528 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462740 | G7JA19 | 92.039 | 515 | 9 | 4 | 1 | 485 | 1 | 513 | 0.0 | 966 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0462740 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0462740 | -0.800779 | 1.227927e-48 | -8.615850e-47 |
| Msa0090350 | Msa0462740 | 0.803375 | 3.592623e-49 | -8.615850e-47 |
| Msa0092220 | Msa0462740 | -0.801201 | 1.006821e-48 | -8.615850e-47 |
| Msa0160650 | Msa0462740 | 0.817302 | 3.538030e-52 | -8.615850e-47 |
| Msa0226450 | Msa0462740 | 0.800867 | 1.178077e-48 | -8.615850e-47 |
| Msa0368790 | Msa0462740 | 0.850400 | 1.739771e-60 | -8.615850e-47 |
| Msa0416090 | Msa0462740 | 0.883046 | 6.250178e-71 | -8.615850e-47 |
| Msa0462740 | Msa0508330 | 0.880669 | 4.537455e-70 | -8.615850e-47 |
| Msa0462740 | Msa0526520 | 0.828454 | 8.908449e-55 | -8.615850e-47 |
| Msa0462740 | Msa0571900 | 0.812304 | 4.534070e-51 | -8.615850e-47 |
| Msa0462740 | Msa0649530 | 0.801217 | 9.990843e-49 | -8.615850e-47 |
| Msa0462740 | Msa0853150 | 0.801582 | 8.411168e-49 | -8.615850e-47 |
| Msa0462740 | Msa1014550 | 0.800844 | 1.191052e-48 | -8.615850e-47 |
| Msa0462740 | Msa1055520 | 0.825099 | 5.638382e-54 | -8.615850e-47 |
| Msa0462740 | Msa1078590 | 0.800301 | 1.537179e-48 | -8.615850e-47 |
| Msa0462740 | Msa1089130 | 0.819559 | 1.090017e-52 | -8.615850e-47 |
| Msa0462740 | Msa1257960 | 0.800462 | 1.425365e-48 | -8.615850e-47 |
| Msa0462740 | Msa1260520 | 0.812313 | 4.514108e-51 | -8.615850e-47 |
| Msa0462740 | Msa1298980 | 0.810245 | 1.268574e-50 | -8.615850e-47 |
| Msa0462740 | Msa1329020 | 0.818725 | 1.687214e-52 | -8.615850e-47 |
| Msa0462740 | Msa1346920 | 0.806733 | 7.128733e-50 | -8.615850e-47 |
| Msa0462740 | Msa1363310 | 0.827488 | 1.521494e-54 | -8.615850e-47 |
| Msa0462740 | Msa1384410 | 0.804168 | 2.458436e-49 | -8.615850e-47 |
| Msa0462740 | Msa1386580 | 0.828769 | 7.476802e-55 | -8.615850e-47 |
| Msa0462740 | Msa1446220 | 0.806018 | 1.008199e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462740 | MtrunA17_Chr3g0112601 | 92.039 | 515 | 9 | 4 | 1 | 485 | 1 | 513 | 0.0 | 966 |
| Msa0462740 | MtrunA17_Chr5g0436051 | 68.859 | 517 | 116 | 7 | 1 | 485 | 113 | 616 | 0.0 | 680 |
| Msa0462740 | MtrunA17_Chr8g0373781 | 52.349 | 447 | 174 | 6 | 72 | 484 | 90 | 531 | 6.96e-142 | 417 |
| Msa0462740 | MtrunA17_Chr1g0154501 | 48.073 | 493 | 190 | 13 | 33 | 484 | 1 | 468 | 8.39e-142 | 415 |
| Msa0462740 | MtrunA17_Chr5g0403301 | 57.475 | 301 | 105 | 3 | 186 | 484 | 27 | 306 | 1.48e-110 | 329 |
| Msa0462740 | MtrunA17_Chr5g0403271 | 67.320 | 153 | 50 | 0 | 332 | 484 | 1 | 153 | 1.29e-60 | 195 |
| Msa0462740 | MtrunA17_Chr5g0403261 | 36.022 | 372 | 124 | 10 | 33 | 296 | 1 | 366 | 3.46e-57 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462740 | AT2G39830.1 | 60.583 | 515 | 159 | 7 | 8 | 485 | 21 | 528 | 0.0 | 585 |
| Msa0462740 | AT2G39830.2 | 60.232 | 518 | 159 | 8 | 8 | 485 | 21 | 531 | 0.0 | 579 |
| Msa0462740 | AT2G39830.3 | 59.806 | 515 | 154 | 8 | 8 | 485 | 21 | 519 | 0.0 | 570 |
| Msa0462740 | AT2G39830.4 | 57.673 | 404 | 131 | 5 | 8 | 376 | 21 | 419 | 5.23e-156 | 451 |
| Msa0462740 | AT1G19270.1 | 44.712 | 539 | 205 | 7 | 33 | 485 | 1 | 532 | 3.85e-146 | 429 |
| Msa0462740 | AT1G19270.2 | 44.712 | 539 | 205 | 7 | 33 | 485 | 1 | 532 | 3.85e-146 | 429 |
| Msa0462740 | AT4G36860.1 | 53.394 | 442 | 154 | 6 | 75 | 484 | 132 | 553 | 5.60e-145 | 427 |
| Msa0462740 | AT4G36860.3 | 53.394 | 442 | 154 | 6 | 75 | 484 | 156 | 577 | 8.06e-145 | 427 |
| Msa0462740 | AT4G36860.2 | 50.599 | 334 | 116 | 5 | 75 | 376 | 132 | 448 | 1.15e-103 | 317 |
| Msa0462740 | AT5G66620.1 | 40.042 | 477 | 229 | 10 | 36 | 477 | 186 | 640 | 5.05e-102 | 319 |
| Msa0462740 | AT5G66620.3 | 40.042 | 477 | 229 | 10 | 36 | 477 | 177 | 631 | 5.18e-102 | 319 |
| Msa0462740 | AT5G66620.4 | 40.042 | 477 | 229 | 10 | 36 | 477 | 177 | 631 | 5.18e-102 | 319 |
| Msa0462740 | AT5G66610.3 | 42.043 | 421 | 209 | 7 | 81 | 478 | 16 | 424 | 1.95e-96 | 298 |
| Msa0462740 | AT5G66610.1 | 42.043 | 421 | 209 | 7 | 81 | 478 | 143 | 551 | 2.19e-95 | 299 |
| Msa0462740 | AT5G66630.1 | 42.978 | 356 | 176 | 5 | 146 | 477 | 346 | 698 | 8.53e-90 | 289 |
| Msa0462740 | AT5G66610.2 | 39.509 | 448 | 209 | 8 | 81 | 478 | 143 | 578 | 1.62e-89 | 285 |
| Msa0462740 | AT5G66640.3 | 44.444 | 324 | 165 | 5 | 167 | 477 | 10 | 331 | 1.55e-86 | 270 |
| Msa0462740 | AT5G66640.1 | 44.444 | 324 | 165 | 5 | 167 | 477 | 117 | 438 | 3.71e-85 | 270 |
| Msa0462740 | AT5G66640.7 | 44.444 | 324 | 165 | 5 | 167 | 477 | 117 | 438 | 3.71e-85 | 270 |
| Msa0462740 | AT5G66640.5 | 37.444 | 446 | 234 | 10 | 72 | 477 | 30 | 470 | 4.09e-85 | 270 |
| Msa0462740 | AT5G66640.4 | 44.444 | 324 | 165 | 5 | 167 | 477 | 148 | 469 | 1.15e-84 | 269 |
| Msa0462740 | AT5G17890.1 | 39.618 | 419 | 196 | 8 | 105 | 484 | 1208 | 1608 | 2.54e-82 | 278 |
| Msa0462740 | AT5G66640.6 | 34.081 | 446 | 245 | 11 | 72 | 477 | 30 | 466 | 2.76e-69 | 229 |
| Msa0462740 | AT5G66640.2 | 39.815 | 324 | 176 | 6 | 167 | 477 | 148 | 465 | 6.82e-69 | 228 |
| Msa0462740 | AT5G66620.2 | 34.412 | 340 | 168 | 9 | 36 | 342 | 177 | 494 | 1.63e-53 | 188 |
Find 131 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCATAACCCTCTTGTTTC+TGG | 0.157651 | 3_3:-61903488 | None:intergenic |
| CTTTCACACCCTTGCATATA+TGG | 0.193810 | 3_3:+61900559 | Msa0462740:CDS |
| ATTGGAGGTCATCGATTAAT+AGG | 0.218874 | 3_3:+61903651 | Msa0462740:CDS |
| CAGCTTATGGTGGAGGCTTT+AGG | 0.246390 | 3_3:+61904416 | Msa0462740:CDS |
| ATCCAAAGTTGAGAATAAAT+TGG | 0.266485 | 3_3:+61904354 | Msa0462740:CDS |
| GATACTCTATGGTAATTGTT+TGG | 0.269551 | 3_3:+61902167 | Msa0462740:CDS |
| CTGTATCCGCGGGGATAAAA+AGG | 0.275435 | 3_3:-61901710 | None:intergenic |
| ACGGCTATTCTTGTTCTCTA+TGG | 0.281959 | 3_3:+61903717 | Msa0462740:CDS |
| CTTCTCTGAGAAGTTTGAAT+TGG | 0.283034 | 3_3:+61904529 | Msa0462740:three_prime_UTR |
| AATACCTCACGCTCAGTAAT+AGG | 0.302681 | 3_3:-61902246 | None:intergenic |
| AATGATTCTTCTCCAGCTTA+TGG | 0.306927 | 3_3:+61904403 | Msa0462740:CDS |
| CACTTGCAGATACCTATAAA+TGG | 0.315905 | 3_3:+61902940 | Msa0462740:intron |
| CAGATACCTATAAATGGTTC+TGG | 0.327287 | 3_3:+61902946 | Msa0462740:intron |
| ACCGCCACCCCTTCCTCTAT+TGG | 0.349455 | 3_3:-61901045 | None:intergenic |
| ACCCAATTTATTCTCAACTT+TGG | 0.354011 | 3_3:-61904356 | None:intergenic |
| ATACTCTATGGTAATTGTTT+GGG | 0.355449 | 3_3:+61902168 | Msa0462740:CDS |
| ATCAAACCAGAACCATTTAT+AGG | 0.366116 | 3_3:-61902952 | None:intergenic |
| GAATCTGCTATAACAGATAC+TGG | 0.369119 | 3_3:+61903238 | Msa0462740:CDS |
| ACTGACCAGTCAAACGAATA+TGG | 0.374788 | 3_3:-61904486 | None:intergenic |
| TTTCTCGTTAAGGATATAGA+TGG | 0.392201 | 3_3:+61901606 | Msa0462740:intron |
| TTCAAAATTGGATCCAATAG+AGG | 0.394023 | 3_3:+61901032 | Msa0462740:CDS |
| AATGCAGCTGTTAATAAATA+CGG | 0.395213 | 3_3:+61904445 | Msa0462740:CDS |
| GAGAAGAATCATTGGCAATC+TGG | 0.404259 | 3_3:-61904393 | None:intergenic |
| GTTCTGTTTACCAAGGATCT+AGG | 0.408729 | 3_3:-61901116 | None:intergenic |
| TCCTCCTGCAATTTCATGCT+CGG | 0.411253 | 3_3:+61904583 | Msa0462740:three_prime_UTR |
| AGTATAGGTGTCACCCCTAT+TGG | 0.411574 | 3_3:+61902977 | Msa0462740:CDS |
| TTGTAGCTGTGAAAGATTAG+AGG | 0.414076 | 3_3:+61903047 | Msa0462740:CDS |
| TCATACTCAGAGAGGAAGTC+TGG | 0.418210 | 3_3:+61900984 | Msa0462740:CDS |
| CCCTCCGAGCATGAAATTGC+AGG | 0.420712 | 3_3:-61904587 | None:intergenic |
| TTTATAAATATAAACCTTTG+AGG | 0.423130 | 3_3:-61904086 | None:intergenic |
| GCAAGAGAAAATGAAAATGA+TGG | 0.426655 | 3_3:-61900460 | None:intergenic |
| ATAGGCTTCCATCGTCGTTA+TGG | 0.428862 | 3_3:+61900510 | Msa0462740:exon |
| TCCAAAGTTGAGAATAAATT+GGG | 0.442486 | 3_3:+61904355 | Msa0462740:CDS |
| ACTGATGATGATTATGCAAA+AGG | 0.448006 | 3_3:+61901638 | Msa0462740:CDS |
| CTCGACCATATTCGTTTGAC+TGG | 0.450760 | 3_3:+61904481 | Msa0462740:CDS |
| GTTCTGGTTTGATTGAGTAT+AGG | 0.459803 | 3_3:+61902962 | Msa0462740:CDS |
| TCTTCTCCAGCTTATGGTGG+AGG | 0.460658 | 3_3:+61904409 | Msa0462740:CDS |
| CAAGAGAAAATGAAAATGAT+GGG | 0.461185 | 3_3:-61900459 | None:intergenic |
| TTGGAGGTCATCGATTAATA+GGG | 0.465099 | 3_3:+61903652 | Msa0462740:CDS |
| GGGCGAAAGATACTTTAGAT+TGG | 0.466962 | 3_3:+61903183 | Msa0462740:CDS |
| TGCAACAAGGAGATACTCTA+TGG | 0.469294 | 3_3:+61902156 | Msa0462740:CDS |
| TGTTGTTTCAGATACATAGA+TGG | 0.470430 | 3_3:+61903622 | Msa0462740:intron |
| GAGATGAGTGCATGCGATCC+TGG | 0.470780 | 3_3:-61901664 | None:intergenic |
| GTCAGGTTCTTTCTTACATG+TGG | 0.478393 | 3_3:+61904227 | Msa0462740:CDS |
| AATGATGGGGAGAGAAAAGA+AGG | 0.481215 | 3_3:-61900445 | None:intergenic |
| GATTAGAAAATGTGAAGTTA+CGG | 0.482008 | 3_3:+61903698 | Msa0462740:CDS |
| GAGTGACACCGAAAGCAGTC+TGG | 0.486184 | 3_3:-61902213 | None:intergenic |
| GCGAGCTCCGCCTAGATCCT+TGG | 0.490552 | 3_3:+61901106 | Msa0462740:CDS |
| TACATTCTTCTCTCCGACGA+TGG | 0.490881 | 3_3:-61903371 | None:intergenic |
| CTAAAGCCTCCACCATAAGC+TGG | 0.492632 | 3_3:-61904415 | None:intergenic |
| AGTAGTAGTGAATTTATACT+TGG | 0.492649 | 3_3:-61904633 | None:intergenic |
| CAAATCCCCATGCTTCTAGT+TGG | 0.496791 | 3_3:+61903328 | Msa0462740:CDS |
| TCCAATAGAGGAAGGGGTGG+CGG | 0.500442 | 3_3:+61901044 | Msa0462740:CDS |
| TCTCTAATAGCATGATAAAG+AGG | 0.502415 | 3_3:-61903271 | None:intergenic |
| CTCTTGTTTCTGGCATGTGA+TGG | 0.503693 | 3_3:-61903478 | None:intergenic |
| TAGAACTAGGAAGGAGGAAG+AGG | 0.505835 | 3_3:+61901449 | Msa0462740:CDS |
| CACATACCTTCCTCGACTGC+AGG | 0.506229 | 3_3:-61904205 | None:intergenic |
| AGGATAACCGTGCTAGAACT+AGG | 0.513141 | 3_3:+61901436 | Msa0462740:intron |
| AGATACTTTAGATTGGATGA+TGG | 0.513463 | 3_3:+61903190 | Msa0462740:CDS |
| GAAGTTGTTCTTATTACAGT+GGG | 0.516770 | 3_3:-61904510 | None:intergenic |
| ATAAGCTGGAGAAGAATCAT+TGG | 0.517979 | 3_3:-61904401 | None:intergenic |
| TAAGGATATAGATGGCGAAC+GGG | 0.518979 | 3_3:+61901614 | Msa0462740:intron |
| GCCTCCTACTCGTCAAAGAA+AGG | 0.519130 | 3_3:+61904325 | Msa0462740:CDS |
| CTTGAAGCAGAAGTTATGTC+AGG | 0.522730 | 3_3:+61904250 | Msa0462740:CDS |
| TCTCTTCCAACTAGAAGCAT+GGG | 0.524105 | 3_3:-61903334 | None:intergenic |
| CTTCCTCGACTGCAGGATCA+AGG | 0.524983 | 3_3:-61904198 | None:intergenic |
| CATTCTCTTAAATTTAAACA+AGG | 0.527645 | 3_3:-61904666 | None:intergenic |
| TTCTCTTCCAACTAGAAGCA+TGG | 0.528812 | 3_3:-61903335 | None:intergenic |
| GAAGCTGCGGCTGATGTTGA+TGG | 0.531468 | 3_3:-61904286 | None:intergenic |
| CACACGAATTGATGCATGGT+TGG | 0.536922 | 3_3:+61904058 | Msa0462740:CDS |
| CCATCGCATAACAGAATATG+TGG | 0.542226 | 3_3:+61902129 | Msa0462740:CDS |
| AATTTCATGCTCGGAGGGGA+AGG | 0.543487 | 3_3:+61904592 | Msa0462740:three_prime_UTR |
| CATGGTTGGTTACGCCTCAA+AGG | 0.543559 | 3_3:+61904072 | Msa0462740:CDS |
| AATTGGATCCAATAGAGGAA+GGG | 0.544250 | 3_3:+61901037 | Msa0462740:CDS |
| AGAATATTGATATCTGATGA+AGG | 0.544355 | 3_3:-61900538 | None:intergenic |
| GAAGATTTAAAGATACCAGC+AGG | 0.544900 | 3_3:+61901504 | Msa0462740:CDS |
| CGCGCCTTTCTTTGACGAGT+AGG | 0.545826 | 3_3:-61904329 | None:intergenic |
| CTTGATCCTGCAGTCGAGGA+AGG | 0.549426 | 3_3:+61904199 | Msa0462740:CDS |
| CCTCCTTCCTAGTTCTAGCA+CGG | 0.551271 | 3_3:-61901443 | None:intergenic |
| CCTGCAATTTCATGCTCGGA+GGG | 0.551389 | 3_3:+61904587 | Msa0462740:three_prime_UTR |
| TGATTATGCAAAAGGACTCC+AGG | 0.551524 | 3_3:+61901646 | Msa0462740:CDS |
| AGTCGAGGAAGGTATGTGTC+AGG | 0.552796 | 3_3:+61904210 | Msa0462740:CDS |
| GAAAATTTACCTGTATCCGC+GGG | 0.556759 | 3_3:-61901720 | None:intergenic |
| CTTTGACGAGTAGGAGGCGG+AGG | 0.559142 | 3_3:-61904320 | None:intergenic |
| CGACTGCAGGATCAAGGTTG+CGG | 0.559913 | 3_3:-61904192 | None:intergenic |
| TATGGGTGCAGGTTACTGAC+AGG | 0.560288 | 3_3:+61904024 | Msa0462740:intron |
| ACTTTAGATTGGATGATGGA+CGG | 0.560406 | 3_3:+61903194 | Msa0462740:CDS |
| AGAAAATACCATATATGCAA+GGG | 0.562357 | 3_3:-61900567 | None:intergenic |
| AAGAAAATACCATATATGCA+AGG | 0.562532 | 3_3:-61900568 | None:intergenic |
| CAACCTTGATCCTGCAGTCG+AGG | 0.569513 | 3_3:+61904195 | Msa0462740:CDS |
| AAATTGGATCCAATAGAGGA+AGG | 0.570246 | 3_3:+61901036 | Msa0462740:CDS |
| GTATTATCATGTTCATGAGA+TGG | 0.570316 | 3_3:-61903015 | None:intergenic |
| GATTCTTCTCCAGCTTATGG+TGG | 0.571199 | 3_3:+61904406 | Msa0462740:CDS |
| CATGCATCAATTCGTGTGCA+AGG | 0.577759 | 3_3:-61904053 | None:intergenic |
| TGACAGTCTGTTCTTCTGAA+AGG | 0.579709 | 3_3:-61903508 | None:intergenic |
| AAGGTAAAGGAGCGCATGGA+GGG | 0.580876 | 3_3:-61901691 | None:intergenic |
| ATTGGATCCAATAGAGGAAG+GGG | 0.580906 | 3_3:+61901038 | Msa0462740:CDS |
| GCCTTTCTTTGACGAGTAGG+AGG | 0.581137 | 3_3:-61904326 | None:intergenic |
| TCCTGCAATTTCATGCTCGG+AGG | 0.583723 | 3_3:+61904586 | Msa0462740:three_prime_UTR |
| CCACATATTCTGTTATGCGA+TGG | 0.593174 | 3_3:-61902129 | None:intergenic |
| AGAAGTTGTTCTTATTACAG+TGG | 0.596071 | 3_3:-61904511 | None:intergenic |
| TTGTTCTCTATGGTCTTCCG+AGG | 0.596093 | 3_3:+61903727 | Msa0462740:CDS |
| CTGTAGACGAAAACATGGCT+TGG | 0.602540 | 3_3:+61901084 | Msa0462740:CDS |
| CATCACATGCCAGAAACAAG+AGG | 0.608056 | 3_3:+61903479 | Msa0462740:CDS |
| GCTATTAGAGACTATTACGA+AGG | 0.610014 | 3_3:+61903283 | Msa0462740:CDS |
| TTTCTTTGACGAGTAGGAGG+CGG | 0.611450 | 3_3:-61904323 | None:intergenic |
| GGAAAATTTACCTGTATCCG+CGG | 0.614083 | 3_3:-61901721 | None:intergenic |
| TTAAGGATATAGATGGCGAA+CGG | 0.616195 | 3_3:+61901613 | Msa0462740:intron |
| TAACCGTGCTAGAACTAGGA+AGG | 0.619072 | 3_3:+61901440 | Msa0462740:CDS |
| GGTAGAAGAAGAAGAAGCTG+CGG | 0.625167 | 3_3:-61904299 | None:intergenic |
| ACCTTCTCCTGGAAGTCTCG+GGG | 0.625683 | 3_3:+61903163 | Msa0462740:intron |
| CTCTTCCAACTAGAAGCATG+GGG | 0.633927 | 3_3:-61903333 | None:intergenic |
| AAGAGAAAATGAAAATGATG+GGG | 0.641561 | 3_3:-61900458 | None:intergenic |
| GCACTTAATGAAGCCATCGT+CGG | 0.646144 | 3_3:+61903358 | Msa0462740:CDS |
| ATGATGGGGAGAGAAAAGAA+GGG | 0.646545 | 3_3:-61900444 | None:intergenic |
| TCATCCTATTACTGAGCGTG+AGG | 0.648329 | 3_3:+61902242 | Msa0462740:CDS |
| TTTCTTCTTCATACTCAGAG+AGG | 0.657884 | 3_3:+61900976 | Msa0462740:CDS |
| AGGAGGTGCCATAACGACGA+TGG | 0.659358 | 3_3:-61900518 | None:intergenic |
| ATCACATGCCAGAAACAAGA+GGG | 0.660956 | 3_3:+61903480 | Msa0462740:CDS |
| CTGCAATTTCATGCTCGGAG+GGG | 0.661590 | 3_3:+61904588 | Msa0462740:three_prime_UTR |
| CTTGCACACGAATTGATGCA+TGG | 0.666672 | 3_3:+61904054 | Msa0462740:CDS |
| TCCGAGCATGAAATTGCAGG+AGG | 0.671178 | 3_3:-61904584 | None:intergenic |
| CCGTGCTAGAACTAGGAAGG+AGG | 0.672994 | 3_3:+61901443 | Msa0462740:CDS |
| GCAACCTGTAGACGAAAACA+TGG | 0.674646 | 3_3:+61901079 | Msa0462740:CDS |
| AATATGTGGAGGATGCAACA+AGG | 0.680326 | 3_3:+61902143 | Msa0462740:CDS |
| GGATCCAATAGAGGAAGGGG+TGG | 0.681667 | 3_3:+61901041 | Msa0462740:CDS |
| AAAGGTAAAGGAGCGCATGG+AGG | 0.686908 | 3_3:-61901692 | None:intergenic |
| TCGCATAACAGAATATGTGG+AGG | 0.700111 | 3_3:+61902132 | Msa0462740:CDS |
| CTGTTTACCAAGGATCTAGG+CGG | 0.702697 | 3_3:-61901113 | None:intergenic |
| AAAATTTACCTGTATCCGCG+GGG | 0.764166 | 3_3:-61901719 | None:intergenic |
| ATATTGATATCTGATGAAGG+AGG | 0.767738 | 3_3:-61900535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTCTTGTTTTTTATTTT+TGG | + | chr3_3:61900692-61900711 | Msa0462740:intron | 10.0% |
| !! | TTTATTTATGTATAAGTTAT+AGG | - | chr3_3:61900787-61900806 | None:intergenic | 10.0% |
| !! | CTAAATGATTACAAATAAAT+AGG | - | chr3_3:61902763-61902782 | None:intergenic | 15.0% |
| !! | AACAGAAAATCATAAATAAA+TGG | - | chr3_3:61903606-61903625 | None:intergenic | 15.0% |
| !! | GTATTAAATATTAATTACCT+CGG | - | chr3_3:61903747-61903766 | None:intergenic | 15.0% |
| !! | TAATATTTAATACACAACAA+CGG | + | chr3_3:61903754-61903773 | Msa0462740:intron | 15.0% |
| !!! | GTAATAAATTTTTTTCAAAG+TGG | - | chr3_3:61903817-61903836 | None:intergenic | 15.0% |
| !! | TTTATAAATATAAACCTTTG+AGG | - | chr3_3:61904089-61904108 | None:intergenic | 15.0% |
| !! | ACCAAAAAATCTATACATAT+AGG | + | chr3_3:61900492-61900511 | Msa0462740:five_prime_UTR | 20.0% |
| !! | TAAATAGATATACATAAGGA+AGG | - | chr3_3:61900615-61900634 | None:intergenic | 20.0% |
| !! | AAAATTGCAACAACAAAAAA+GGG | - | chr3_3:61900938-61900957 | None:intergenic | 20.0% |
| !!! | TTTGGAAAGATTTTCAAAAT+TGG | + | chr3_3:61901020-61901039 | Msa0462740:CDS | 20.0% |
| !! | TTATATTTATTTCCATCTCA+AGG | + | chr3_3:61901239-61901258 | Msa0462740:intron | 20.0% |
| !! | TTCAATAAATCAATATCTGA+TGG | + | chr3_3:61902064-61902083 | Msa0462740:intron | 20.0% |
| !! | TTAAAACAATACTTGTGATA+TGG | - | chr3_3:61902518-61902537 | None:intergenic | 20.0% |
| !!! | ATATCACAAGTATTGTTTTA+AGG | + | chr3_3:61902517-61902536 | Msa0462740:intron | 20.0% |
| !! | AAGAAAAACTTACATAATGA+TGG | - | chr3_3:61902571-61902590 | None:intergenic | 20.0% |
| !! | TAGTTTAAGTCATTAAATGT+CGG | + | chr3_3:61902644-61902663 | Msa0462740:intron | 20.0% |
| !! | AATGTCATAAGAAAACTATT+TGG | - | chr3_3:61902699-61902718 | None:intergenic | 20.0% |
| !! | TTATTTCCATGATCTTAAAA+AGG | - | chr3_3:61903094-61903113 | None:intergenic | 20.0% |
| !!! | CATTTTCTAATCAATTTTTG+AGG | - | chr3_3:61903690-61903709 | None:intergenic | 20.0% |
| !!! | ATCATTTTCTCAAAATTCAT+AGG | - | chr3_3:61903839-61903858 | None:intergenic | 20.0% |
| !! | TTAAGTTTGTGATTATGTTA+AGG | + | chr3_3:61903975-61903994 | Msa0462740:intron | 20.0% |
| !! | AAGTGTTCTGATATATTTAT+GGG | + | chr3_3:61904007-61904026 | Msa0462740:intron | 20.0% |
| !! | AATCAAATCATGTAATACTA+AGG | - | chr3_3:61904140-61904159 | None:intergenic | 20.0% |
| ! | AAGAGAAAATGAAAATGATG+GGG | - | chr3_3:61900461-61900480 | None:intergenic | 25.0% |
| ! | CAAGAGAAAATGAAAATGAT+GGG | - | chr3_3:61900462-61900481 | None:intergenic | 25.0% |
| !!! | GCCTATATGTATAGATTTTT+TGG | - | chr3_3:61900496-61900515 | None:intergenic | 25.0% |
| ! | AGAATATTGATATCTGATGA+AGG | - | chr3_3:61900541-61900560 | None:intergenic | 25.0% |
| ! | AGAAAATACCATATATGCAA+GGG | - | chr3_3:61900570-61900589 | None:intergenic | 25.0% |
| ! | AAGAAAATACCATATATGCA+AGG | - | chr3_3:61900571-61900590 | None:intergenic | 25.0% |
| ! | ATACATAAGGAAGGAAAAAT+AGG | - | chr3_3:61900606-61900625 | None:intergenic | 25.0% |
| !! | GCTCTAAATAGATATACATA+AGG | - | chr3_3:61900619-61900638 | None:intergenic | 25.0% |
| ! | CAAAATTGCAACAACAAAAA+AGG | - | chr3_3:61900939-61900958 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTGTTGCAATTT+TGG | + | chr3_3:61900937-61900956 | Msa0462740:intron | 25.0% |
| ! | TAATTGAATTAACCTTGAGA+TGG | - | chr3_3:61901254-61901273 | None:intergenic | 25.0% |
| !! | TTTTGAATTTTAGACTGTGT+AGG | + | chr3_3:61901335-61901354 | Msa0462740:intron | 25.0% |
| ! | ATTGTTTAGTACATTGATCT+AGG | - | chr3_3:61901401-61901420 | None:intergenic | 25.0% |
| ! | ACAATATTCTTGATGCTAAT+AGG | + | chr3_3:61901416-61901435 | Msa0462740:intron | 25.0% |
| !! | TTATTTGCATTTTCTCGTTA+AGG | + | chr3_3:61901596-61901615 | Msa0462740:intron | 25.0% |
| ! | AATCTTGACTTATATGAAGT+TGG | - | chr3_3:61901789-61901808 | None:intergenic | 25.0% |
| ! | AATCTTGACTTATATGAAGT+TGG | - | chr3_3:61901789-61901808 | None:intergenic | 25.0% |
| ! | AAAACACTGTTCAAATTCAA+AGG | - | chr3_3:61901962-61901981 | None:intergenic | 25.0% |
| ! | ATACTCTATGGTAATTGTTT+GGG | + | chr3_3:61902168-61902187 | Msa0462740:CDS | 25.0% |
| !! | TGTAAATAGCATGATTTTGT+CGG | - | chr3_3:61902388-61902407 | None:intergenic | 25.0% |
| ! | TTGTGAAAAAAGAAATGGAA+GGG | - | chr3_3:61902595-61902614 | None:intergenic | 25.0% |
| ! | ATTGTGAAAAAAGAAATGGA+AGG | - | chr3_3:61902596-61902615 | None:intergenic | 25.0% |
| ! | AAGAAAACTAATAACCAAGT+AGG | - | chr3_3:61902621-61902640 | None:intergenic | 25.0% |
| ! | CATTGATCAATCATATGATA+TGG | + | chr3_3:61902808-61902827 | Msa0462740:intron | 25.0% |
| !!! | CTAGTTTTCTGATATATCAA+TGG | - | chr3_3:61902846-61902865 | None:intergenic | 25.0% |
| !!! | AATATTTTTGGTTCCAATAG+GGG | - | chr3_3:61902993-61903012 | None:intergenic | 25.0% |
| !!! | CAATATTTTTGGTTCCAATA+GGG | - | chr3_3:61902994-61903013 | None:intergenic | 25.0% |
| !!! | ACAATATTTTTGGTTCCAAT+AGG | - | chr3_3:61902995-61903014 | None:intergenic | 25.0% |
| !!! | TTATCTCCTTTTTAAGATCA+TGG | + | chr3_3:61903085-61903104 | Msa0462740:intron | 25.0% |
| ! | TATGACTGAAAAACAAAGAA+TGG | - | chr3_3:61903407-61903426 | None:intergenic | 25.0% |
| !!! | ATTCTTTGTTTTTCAGTCAT+AGG | + | chr3_3:61903406-61903425 | Msa0462740:intron | 25.0% |
| ! | ATACATAGATGGTCAAAAAT+TGG | + | chr3_3:61903633-61903652 | Msa0462740:CDS | 25.0% |
| ! | GATTAGAAAATGTGAAGTTA+CGG | + | chr3_3:61903698-61903717 | Msa0462740:CDS | 25.0% |
| ! | AGTTTCGATAACAATTTAGA+TGG | + | chr3_3:61903863-61903882 | Msa0462740:intron | 25.0% |
| !! | ATTAACCATGATTTTGAATG+CGG | + | chr3_3:61903917-61903936 | Msa0462740:intron | 25.0% |
| !! | AATTTTACACCTGAAAATTG+TGG | - | chr3_3:61903944-61903963 | None:intergenic | 25.0% |
| ! | CAAGTGTTCTGATATATTTA+TGG | + | chr3_3:61904006-61904025 | Msa0462740:intron | 25.0% |
| ! | TCACTTATCTTAATCTAATC+AGG | + | chr3_3:61904166-61904185 | Msa0462740:intron | 25.0% |
| ! | ATCCAAAGTTGAGAATAAAT+TGG | + | chr3_3:61904354-61904373 | Msa0462740:CDS | 25.0% |
| ! | TCCAAAGTTGAGAATAAATT+GGG | + | chr3_3:61904355-61904374 | Msa0462740:CDS | 25.0% |
| ! | AATGCAGCTGTTAATAAATA+CGG | + | chr3_3:61904445-61904464 | Msa0462740:CDS | 25.0% |
| ! | AGTAGTAGTGAATTTATACT+TGG | - | chr3_3:61904552-61904571 | None:intergenic | 25.0% |
| GCAAGAGAAAATGAAAATGA+TGG | - | chr3_3:61900463-61900482 | None:intergenic | 30.0% | |
| ATATTGATATCTGATGAAGG+AGG | - | chr3_3:61900538-61900557 | None:intergenic | 30.0% | |
| AGGAAGGAAAAATAGGAAAA+AGG | - | chr3_3:61900599-61900618 | None:intergenic | 30.0% | |
| CAAATTTCGCATATCAACAA+GGG | - | chr3_3:61900883-61900902 | None:intergenic | 30.0% | |
| TCAAATTTCGCATATCAACA+AGG | - | chr3_3:61900884-61900903 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTGCAATTTTGG+TGG | + | chr3_3:61900940-61900959 | Msa0462740:intron | 30.0% |
| !!! | TTTGTTGTTGCAATTTTGGT+GGG | + | chr3_3:61900941-61900960 | Msa0462740:intron | 30.0% |
| !!! | TCTGGTTTTATGAAATGGTT+TGG | + | chr3_3:61901002-61901021 | Msa0462740:CDS | 30.0% |
| TTCAAAATTGGATCCAATAG+AGG | + | chr3_3:61901032-61901051 | Msa0462740:CDS | 30.0% | |
| TTTCTCGTTAAGGATATAGA+TGG | + | chr3_3:61901606-61901625 | Msa0462740:intron | 30.0% | |
| ! | ACTGATGATGATTATGCAAA+AGG | + | chr3_3:61901638-61901657 | Msa0462740:CDS | 30.0% |
| ! | GTACTGATCAAAATTAGAAG+AGG | - | chr3_3:61901745-61901764 | None:intergenic | 30.0% |
| GATACTCTATGGTAATTGTT+TGG | + | chr3_3:61902167-61902186 | Msa0462740:CDS | 30.0% | |
| TGTGAAAAAAGAAATGGAAG+GGG | - | chr3_3:61902594-61902613 | None:intergenic | 30.0% | |
| GGACATTGTGAAAAAAGAAA+TGG | - | chr3_3:61902600-61902619 | None:intergenic | 30.0% | |
| !!! | TTTTTTCACAATGTCCTACT+TGG | + | chr3_3:61902604-61902623 | Msa0462740:intron | 30.0% |
| AATTGAAGTCGTCGTTAAAA+TGG | + | chr3_3:61902731-61902750 | Msa0462740:intron | 30.0% | |
| ATCAAACCAGAACCATTTAT+AGG | - | chr3_3:61902955-61902974 | None:intergenic | 30.0% | |
| ! | CATGAGATGGACAATATTTT+TGG | - | chr3_3:61903005-61903024 | None:intergenic | 30.0% |
| GTATTATCATGTTCATGAGA+TGG | - | chr3_3:61903018-61903037 | None:intergenic | 30.0% | |
| !! | TATTTTTGATTACCTTCTCC+TGG | + | chr3_3:61903152-61903171 | Msa0462740:intron | 30.0% |
| AGATACTTTAGATTGGATGA+TGG | + | chr3_3:61903190-61903209 | Msa0462740:CDS | 30.0% | |
| TCTCTAATAGCATGATAAAG+AGG | - | chr3_3:61903274-61903293 | None:intergenic | 30.0% | |
| ACTGAAAAACAAAGAATGGA+TGG | - | chr3_3:61903403-61903422 | None:intergenic | 30.0% | |
| AAGCAATTAGCAAGAGTAAA+AGG | - | chr3_3:61903441-61903460 | None:intergenic | 30.0% | |
| ! | TTTTACTCTTGCTAATTGCT+TGG | + | chr3_3:61903440-61903459 | Msa0462740:intron | 30.0% |
| !! | AGGTATTGAAAATCATACAC+TGG | - | chr3_3:61903534-61903553 | None:intergenic | 30.0% |
| TCTGATAAAACAAAAGCAGA+AGG | - | chr3_3:61903554-61903573 | None:intergenic | 30.0% | |
| !! | TGTTGTTTCAGATACATAGA+TGG | + | chr3_3:61903622-61903641 | Msa0462740:intron | 30.0% |
| ACCCAATTTATTCTCAACTT+TGG | - | chr3_3:61904359-61904378 | None:intergenic | 30.0% | |
| GAAGTTGTTCTTATTACAGT+GGG | - | chr3_3:61904513-61904532 | None:intergenic | 30.0% | |
| AGAAGTTGTTCTTATTACAG+TGG | - | chr3_3:61904514-61904533 | None:intergenic | 30.0% | |
| AGTTCTCTAATATCGCATCA+CGG | - | chr3_3:61900737-61900756 | None:intergenic | 35.0% | |
| TTTCTTCTTCATACTCAGAG+AGG | + | chr3_3:61900976-61900995 | Msa0462740:CDS | 35.0% | |
| !!! | GGAAGTCTGGTTTTATGAAA+TGG | + | chr3_3:61900997-61901016 | Msa0462740:CDS | 35.0% |
| AAATTGGATCCAATAGAGGA+AGG | + | chr3_3:61901036-61901055 | Msa0462740:CDS | 35.0% | |
| AATTGGATCCAATAGAGGAA+GGG | + | chr3_3:61901037-61901056 | Msa0462740:CDS | 35.0% | |
| AAAGCAGATAGTTGAGTCAT+TGG | - | chr3_3:61901141-61901160 | None:intergenic | 35.0% | |
| GAAGATTTAAAGATACCAGC+AGG | + | chr3_3:61901504-61901523 | Msa0462740:CDS | 35.0% | |
| ATTTAAAGATACCAGCAGGT+AGG | + | chr3_3:61901508-61901527 | Msa0462740:intron | 35.0% | |
| TTAAGGATATAGATGGCGAA+CGG | + | chr3_3:61901613-61901632 | Msa0462740:intron | 35.0% | |
| TTGACTTATATGAAGTTGGC+TGG | - | chr3_3:61901785-61901804 | None:intergenic | 35.0% | |
| TTGACTTATATGAAGTTGGC+TGG | - | chr3_3:61901785-61901804 | None:intergenic | 35.0% | |
| ! | ATTTTCATCCAGACTGCTTT+CGG | + | chr3_3:61902205-61902224 | Msa0462740:CDS | 35.0% |
| ! | CCTCTTTTATCCATCTCTTA+CGG | + | chr3_3:61902448-61902467 | Msa0462740:intron | 35.0% |
| CTTGGATCAACAGAAACAAA+AGG | - | chr3_3:61902474-61902493 | None:intergenic | 35.0% | |
| ! | TGATCCAAGTTTTCTTTGTC+AGG | + | chr3_3:61902485-61902504 | Msa0462740:intron | 35.0% |
| ! | GATCCAAGTTTTCTTTGTCA+GGG | + | chr3_3:61902486-61902505 | Msa0462740:intron | 35.0% |
| TGATGGCAAACTTCACATTT+AGG | - | chr3_3:61902554-61902573 | None:intergenic | 35.0% | |
| CACTTGCAGATACCTATAAA+TGG | + | chr3_3:61902940-61902959 | Msa0462740:intron | 35.0% | |
| CAGATACCTATAAATGGTTC+TGG | + | chr3_3:61902946-61902965 | Msa0462740:intron | 35.0% | |
| !! | GTTCTGGTTTGATTGAGTAT+AGG | + | chr3_3:61902962-61902981 | Msa0462740:CDS | 35.0% |
| TTGTAGCTGTGAAAGATTAG+AGG | + | chr3_3:61903047-61903066 | Msa0462740:CDS | 35.0% | |
| !! | ACTTTAGATTGGATGATGGA+CGG | + | chr3_3:61903194-61903213 | Msa0462740:CDS | 35.0% |
| !! | GATTTTGTGCTTTGAATGCA+TGG | + | chr3_3:61903216-61903235 | Msa0462740:CDS | 35.0% |
| GAATCTGCTATAACAGATAC+TGG | + | chr3_3:61903238-61903257 | Msa0462740:CDS | 35.0% | |
| GCTATTAGAGACTATTACGA+AGG | + | chr3_3:61903283-61903302 | Msa0462740:CDS | 35.0% | |
| TAATTGCTTGGTTTCTACCA+GGG | + | chr3_3:61903452-61903471 | Msa0462740:intron | 35.0% | |
| CATAGATGGTCAAAAATTGG+AGG | + | chr3_3:61903636-61903655 | Msa0462740:CDS | 35.0% | |
| ! | ATTGGAGGTCATCGATTAAT+AGG | + | chr3_3:61903651-61903670 | Msa0462740:CDS | 35.0% |
| ! | TTGGAGGTCATCGATTAATA+GGG | + | chr3_3:61903652-61903671 | Msa0462740:CDS | 35.0% |
| TCTGATATATTTATGGGTGC+AGG | + | chr3_3:61904013-61904032 | Msa0462740:intron | 35.0% | |
| ATAAGCTGGAGAAGAATCAT+TGG | - | chr3_3:61904404-61904423 | None:intergenic | 35.0% | |
| AATGATTCTTCTCCAGCTTA+TGG | + | chr3_3:61904403-61904422 | Msa0462740:CDS | 35.0% | |
| ! | CTTCTCTGAGAAGTTTGAAT+TGG | + | chr3_3:61904529-61904548 | Msa0462740:three_prime_UTR | 35.0% |
| ! | ATGATGGGGAGAGAAAAGAA+GGG | - | chr3_3:61900447-61900466 | None:intergenic | 40.0% |
| ! | AATGATGGGGAGAGAAAAGA+AGG | - | chr3_3:61900448-61900467 | None:intergenic | 40.0% |
| CTTTCACACCCTTGCATATA+TGG | + | chr3_3:61900559-61900578 | Msa0462740:CDS | 40.0% | |
| ATTGGATCCAATAGAGGAAG+GGG | + | chr3_3:61901038-61901057 | Msa0462740:CDS | 40.0% | |
| GTTCTGTTTACCAAGGATCT+AGG | - | chr3_3:61901119-61901138 | None:intergenic | 40.0% | |
| !! | GTCATTGGTTCTGTTTACCA+AGG | - | chr3_3:61901126-61901145 | None:intergenic | 40.0% |
| TGTTGTTGCACATGTCAAGT+TGG | + | chr3_3:61901210-61901229 | Msa0462740:intron | 40.0% | |
| CGAACTGTTTGCATTTCGAA+CGG | - | chr3_3:61901301-61901320 | None:intergenic | 40.0% | |
| CGTTCGAAATGCAAACAGTT+CGG | + | chr3_3:61901299-61901318 | Msa0462740:intron | 40.0% | |
| GAAAATTAGTACCTACCTGC+TGG | - | chr3_3:61901522-61901541 | None:intergenic | 40.0% | |
| TAAGGATATAGATGGCGAAC+GGG | + | chr3_3:61901614-61901633 | Msa0462740:intron | 40.0% | |
| TGATTATGCAAAAGGACTCC+AGG | + | chr3_3:61901646-61901665 | Msa0462740:CDS | 40.0% | |
| ! | TAAAAAGGTAAAGGAGCGCA+TGG | - | chr3_3:61901698-61901717 | None:intergenic | 40.0% |
| AAAATTTACCTGTATCCGCG+GGG | - | chr3_3:61901722-61901741 | None:intergenic | 40.0% | |
| GAAAATTTACCTGTATCCGC+GGG | - | chr3_3:61901723-61901742 | None:intergenic | 40.0% | |
| GGAAAATTTACCTGTATCCG+CGG | - | chr3_3:61901724-61901743 | None:intergenic | 40.0% | |
| CCACATATTCTGTTATGCGA+TGG | - | chr3_3:61902132-61902151 | None:intergenic | 40.0% | |
| CCATCGCATAACAGAATATG+TGG | + | chr3_3:61902129-61902148 | Msa0462740:CDS | 40.0% | |
| TCGCATAACAGAATATGTGG+AGG | + | chr3_3:61902132-61902151 | Msa0462740:CDS | 40.0% | |
| AATATGTGGAGGATGCAACA+AGG | + | chr3_3:61902143-61902162 | Msa0462740:CDS | 40.0% | |
| TGCAACAAGGAGATACTCTA+TGG | + | chr3_3:61902156-61902175 | Msa0462740:CDS | 40.0% | |
| AATACCTCACGCTCAGTAAT+AGG | - | chr3_3:61902249-61902268 | None:intergenic | 40.0% | |
| CCGTAAGAGATGGATAAAAG+AGG | - | chr3_3:61902451-61902470 | None:intergenic | 40.0% | |
| AAACAAAAGGCCGTAAGAGA+TGG | - | chr3_3:61902461-61902480 | None:intergenic | 40.0% | |
| CTTCCCTGACAAAGAAAACT+TGG | - | chr3_3:61902492-61902511 | None:intergenic | 40.0% | |
| GGCAAACTTCACATTTAGGA+TGG | - | chr3_3:61902550-61902569 | None:intergenic | 40.0% | |
| GGGCGAAAGATACTTTAGAT+TGG | + | chr3_3:61903183-61903202 | Msa0462740:CDS | 40.0% | |
| ! | TCTCTTCCAACTAGAAGCAT+GGG | - | chr3_3:61903337-61903356 | None:intergenic | 40.0% |
| TTCTCTTCCAACTAGAAGCA+TGG | - | chr3_3:61903338-61903357 | None:intergenic | 40.0% | |
| CTAATTGCTTGGTTTCTACC+AGG | + | chr3_3:61903451-61903470 | Msa0462740:intron | 40.0% | |
| ATCACATGCCAGAAACAAGA+GGG | + | chr3_3:61903480-61903499 | Msa0462740:CDS | 40.0% | |
| TGACAGTCTGTTCTTCTGAA+AGG | - | chr3_3:61903511-61903530 | None:intergenic | 40.0% | |
| ACGGCTATTCTTGTTCTCTA+TGG | + | chr3_3:61903717-61903736 | Msa0462740:CDS | 40.0% | |
| TCATGGTTAATTGCGTTGAG+CGG | - | chr3_3:61903908-61903927 | None:intergenic | 40.0% | |
| GTCAGGTTCTTTCTTACATG+TGG | + | chr3_3:61904227-61904246 | Msa0462740:CDS | 40.0% | |
| CTTGAAGCAGAAGTTATGTC+AGG | + | chr3_3:61904250-61904269 | Msa0462740:CDS | 40.0% | |
| GAGAAGAATCATTGGCAATC+TGG | - | chr3_3:61904396-61904415 | None:intergenic | 40.0% | |
| ACTGACCAGTCAAACGAATA+TGG | - | chr3_3:61904489-61904508 | None:intergenic | 40.0% | |
| ATAGGCTTCCATCGTCGTTA+TGG | + | chr3_3:61900510-61900529 | Msa0462740:exon | 45.0% | |
| !! | TTGCAATTTTGGTGGGAAGC+AGG | + | chr3_3:61900948-61900967 | Msa0462740:intron | 45.0% |
| !! | TGCAATTTTGGTGGGAAGCA+GGG | + | chr3_3:61900949-61900968 | Msa0462740:intron | 45.0% |
| TCATACTCAGAGAGGAAGTC+TGG | + | chr3_3:61900984-61901003 | Msa0462740:CDS | 45.0% | |
| GCAACCTGTAGACGAAAACA+TGG | + | chr3_3:61901079-61901098 | Msa0462740:CDS | 45.0% | |
| ! | CAAGCCATGTTTTCGTCTAC+AGG | - | chr3_3:61901086-61901105 | None:intergenic | 45.0% |
| CTGTAGACGAAAACATGGCT+TGG | + | chr3_3:61901084-61901103 | Msa0462740:CDS | 45.0% | |
| CTGTTTACCAAGGATCTAGG+CGG | - | chr3_3:61901116-61901135 | None:intergenic | 45.0% | |
| AGGATAACCGTGCTAGAACT+AGG | + | chr3_3:61901436-61901455 | Msa0462740:intron | 45.0% | |
| TAACCGTGCTAGAACTAGGA+AGG | + | chr3_3:61901440-61901459 | Msa0462740:CDS | 45.0% | |
| TAGAACTAGGAAGGAGGAAG+AGG | + | chr3_3:61901449-61901468 | Msa0462740:CDS | 45.0% | |
| ! | CCTTTACCTTTTTATCCCCG+CGG | + | chr3_3:61901704-61901723 | Msa0462740:CDS | 45.0% |
| TCATCCTATTACTGAGCGTG+AGG | + | chr3_3:61902242-61902261 | Msa0462740:CDS | 45.0% | |
| GCCTCAACACACATTTACAC+AGG | + | chr3_3:61902322-61902341 | Msa0462740:intron | 45.0% | |
| GCCTGTGTAAATGTGTGTTG+AGG | - | chr3_3:61902326-61902345 | None:intergenic | 45.0% | |
| ! | AGTATAGGTGTCACCCCTAT+TGG | + | chr3_3:61902977-61902996 | Msa0462740:CDS | 45.0% |
| TTACCTTCTCCTGGAAGTCT+CGG | + | chr3_3:61903161-61903180 | Msa0462740:intron | 45.0% | |
| CAAATCCCCATGCTTCTAGT+TGG | + | chr3_3:61903328-61903347 | Msa0462740:CDS | 45.0% | |
| ! | CTCTTCCAACTAGAAGCATG+GGG | - | chr3_3:61903336-61903355 | None:intergenic | 45.0% |
| GCACTTAATGAAGCCATCGT+CGG | + | chr3_3:61903358-61903377 | Msa0462740:CDS | 45.0% | |
| TACATTCTTCTCTCCGACGA+TGG | - | chr3_3:61903374-61903393 | None:intergenic | 45.0% | |
| !! | CTCTTGTTTCTGGCATGTGA+TGG | - | chr3_3:61903481-61903500 | None:intergenic | 45.0% |
| CATCACATGCCAGAAACAAG+AGG | + | chr3_3:61903479-61903498 | Msa0462740:CDS | 45.0% | |
| ! | AGGCATAACCCTCTTGTTTC+TGG | - | chr3_3:61903491-61903510 | None:intergenic | 45.0% |
| TTGTTCTCTATGGTCTTCCG+AGG | + | chr3_3:61903727-61903746 | Msa0462740:CDS | 45.0% | |
| GTGGTCCGCATTCAAAATCA+TGG | - | chr3_3:61903925-61903944 | None:intergenic | 45.0% | |
| ! | GAATGCGGACCACAATTTTC+AGG | + | chr3_3:61903932-61903951 | Msa0462740:intron | 45.0% |
| CATGCATCAATTCGTGTGCA+AGG | - | chr3_3:61904056-61904075 | None:intergenic | 45.0% | |
| CTTGCACACGAATTGATGCA+TGG | + | chr3_3:61904054-61904073 | Msa0462740:CDS | 45.0% | |
| CACACGAATTGATGCATGGT+TGG | + | chr3_3:61904058-61904077 | Msa0462740:CDS | 45.0% | |
| GGTAGAAGAAGAAGAAGCTG+CGG | - | chr3_3:61904302-61904321 | None:intergenic | 45.0% | |
| TTTCTTTGACGAGTAGGAGG+CGG | - | chr3_3:61904326-61904345 | None:intergenic | 45.0% | |
| GATTCTTCTCCAGCTTATGG+TGG | + | chr3_3:61904406-61904425 | Msa0462740:CDS | 45.0% | |
| CTCGACCATATTCGTTTGAC+TGG | + | chr3_3:61904481-61904500 | Msa0462740:CDS | 45.0% | |
| TCCTCCTGCAATTTCATGCT+CGG | + | chr3_3:61904583-61904602 | Msa0462740:three_prime_UTR | 45.0% | |
| !! | GCAATTTTGGTGGGAAGCAG+GGG | + | chr3_3:61900950-61900969 | Msa0462740:intron | 50.0% |
| !! | CCTCCTTCCTAGTTCTAGCA+CGG | - | chr3_3:61901446-61901465 | None:intergenic | 50.0% |
| ! | AAGGTAAAGGAGCGCATGGA+GGG | - | chr3_3:61901694-61901713 | None:intergenic | 50.0% |
| ! | AAAGGTAAAGGAGCGCATGG+AGG | - | chr3_3:61901695-61901714 | None:intergenic | 50.0% |
| CCGCGGGGATAAAAAGGTAA+AGG | - | chr3_3:61901707-61901726 | None:intergenic | 50.0% | |
| CTGTATCCGCGGGGATAAAA+AGG | - | chr3_3:61901713-61901732 | None:intergenic | 50.0% | |
| ! | CTTTTTATCCCCGCGGATAC+AGG | + | chr3_3:61901711-61901730 | Msa0462740:CDS | 50.0% |
| TACCTTCTCCTGGAAGTCTC+GGG | + | chr3_3:61903162-61903181 | Msa0462740:intron | 50.0% | |
| GGTTAATTGCGTTGAGCGGA+TGG | - | chr3_3:61903904-61903923 | None:intergenic | 50.0% | |
| TATGGGTGCAGGTTACTGAC+AGG | + | chr3_3:61904024-61904043 | Msa0462740:intron | 50.0% | |
| ! | CATGGTTGGTTACGCCTCAA+AGG | + | chr3_3:61904072-61904091 | Msa0462740:CDS | 50.0% |
| ! | AGTCGAGGAAGGTATGTGTC+AGG | + | chr3_3:61904210-61904229 | Msa0462740:CDS | 50.0% |
| GCCTCCTACTCGTCAAAGAA+AGG | + | chr3_3:61904325-61904344 | Msa0462740:CDS | 50.0% | |
| GCCTTTCTTTGACGAGTAGG+AGG | - | chr3_3:61904329-61904348 | None:intergenic | 50.0% | |
| TCTTCTCCAGCTTATGGTGG+AGG | + | chr3_3:61904409-61904428 | Msa0462740:CDS | 50.0% | |
| CTAAAGCCTCCACCATAAGC+TGG | - | chr3_3:61904418-61904437 | None:intergenic | 50.0% | |
| ! | CAGCTTATGGTGGAGGCTTT+AGG | + | chr3_3:61904416-61904435 | Msa0462740:CDS | 50.0% |
| TCCGAGCATGAAATTGCAGG+AGG | - | chr3_3:61904587-61904606 | None:intergenic | 50.0% | |
| TCCTGCAATTTCATGCTCGG+AGG | + | chr3_3:61904586-61904605 | Msa0462740:three_prime_UTR | 50.0% | |
| CCTGCAATTTCATGCTCGGA+GGG | + | chr3_3:61904587-61904606 | Msa0462740:three_prime_UTR | 50.0% | |
| CTGCAATTTCATGCTCGGAG+GGG | + | chr3_3:61904588-61904607 | Msa0462740:three_prime_UTR | 50.0% | |
| AATTTCATGCTCGGAGGGGA+AGG | + | chr3_3:61904592-61904611 | Msa0462740:three_prime_UTR | 50.0% | |
| !! | AGGAGGTGCCATAACGACGA+TGG | - | chr3_3:61900521-61900540 | None:intergenic | 55.0% |
| GGATCCAATAGAGGAAGGGG+TGG | + | chr3_3:61901041-61901060 | Msa0462740:CDS | 55.0% | |
| TCCAATAGAGGAAGGGGTGG+CGG | + | chr3_3:61901044-61901063 | Msa0462740:CDS | 55.0% | |
| CCGTGCTAGAACTAGGAAGG+AGG | + | chr3_3:61901443-61901462 | Msa0462740:CDS | 55.0% | |
| GAGATGAGTGCATGCGATCC+TGG | - | chr3_3:61901667-61901686 | None:intergenic | 55.0% | |
| GAGTGACACCGAAAGCAGTC+TGG | - | chr3_3:61902216-61902235 | None:intergenic | 55.0% | |
| ACCTTCTCCTGGAAGTCTCG+GGG | + | chr3_3:61903163-61903182 | Msa0462740:intron | 55.0% | |
| ! | CTGGCATGTGATGGAAACCC+TGG | - | chr3_3:61903472-61903491 | None:intergenic | 55.0% |
| CGACTGCAGGATCAAGGTTG+CGG | - | chr3_3:61904195-61904214 | None:intergenic | 55.0% | |
| CAACCTTGATCCTGCAGTCG+AGG | + | chr3_3:61904195-61904214 | Msa0462740:CDS | 55.0% | |
| CTTCCTCGACTGCAGGATCA+AGG | - | chr3_3:61904201-61904220 | None:intergenic | 55.0% | |
| CTTGATCCTGCAGTCGAGGA+AGG | + | chr3_3:61904199-61904218 | Msa0462740:CDS | 55.0% | |
| CACATACCTTCCTCGACTGC+AGG | - | chr3_3:61904208-61904227 | None:intergenic | 55.0% | |
| GAAGCTGCGGCTGATGTTGA+TGG | - | chr3_3:61904289-61904308 | None:intergenic | 55.0% | |
| CGCGCCTTTCTTTGACGAGT+AGG | - | chr3_3:61904332-61904351 | None:intergenic | 55.0% | |
| CCCTCCGAGCATGAAATTGC+AGG | - | chr3_3:61904590-61904609 | None:intergenic | 55.0% | |
| ACCGCCACCCCTTCCTCTAT+TGG | - | chr3_3:61901048-61901067 | None:intergenic | 60.0% | |
| TCTTTCGCCCCGAGACTTCC+AGG | - | chr3_3:61903173-61903192 | None:intergenic | 60.0% | |
| CTTTGACGAGTAGGAGGCGG+AGG | - | chr3_3:61904323-61904342 | None:intergenic | 60.0% | |
| GCGAGCTCCGCCTAGATCCT+TGG | + | chr3_3:61901106-61901125 | Msa0462740:CDS | 65.0% | |
| GCCCCGAGACTTCCAGGAGA+AGG | - | chr3_3:61903167-61903186 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 61900433 | 61904683 | 61900433 | ID=Msa0462740;Name=Msa0462740 |
| chr3_3 | mRNA | 61900433 | 61904683 | 61900433 | ID=Msa0462740-mRNA-1;Parent=Msa0462740;Name=Msa0462740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=96|0.8|0.90|1|0.9|0.90|11|164|485 |
| chr3_3 | exon | 61900433 | 61900580 | 61900433 | ID=Msa0462740-mRNA-1:exon:13178;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61900967 | 61901127 | 61900967 | ID=Msa0462740-mRNA-1:exon:13179;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61901438 | 61901525 | 61901438 | ID=Msa0462740-mRNA-1:exon:13180;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61901618 | 61901732 | 61901618 | ID=Msa0462740-mRNA-1:exon:13181;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61902125 | 61902263 | 61902125 | ID=Msa0462740-mRNA-1:exon:13182;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61902949 | 61903068 | 61902949 | ID=Msa0462740-mRNA-1:exon:13183;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61903178 | 61903390 | 61903178 | ID=Msa0462740-mRNA-1:exon:13184;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61903473 | 61903535 | 61903473 | ID=Msa0462740-mRNA-1:exon:13185;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61903633 | 61903748 | 61903633 | ID=Msa0462740-mRNA-1:exon:13186;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61904035 | 61904093 | 61904035 | ID=Msa0462740-mRNA-1:exon:13187;Parent=Msa0462740-mRNA-1 |
| chr3_3 | exon | 61904188 | 61904683 | 61904188 | ID=Msa0462740-mRNA-1:exon:13188;Parent=Msa0462740-mRNA-1 |
| chr3_3 | five_prime_UTR | 61900433 | 61900528 | 61900433 | ID=Msa0462740-mRNA-1:five_prime_utr;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61900529 | 61900580 | 61900529 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61900967 | 61901127 | 61900967 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61901438 | 61901525 | 61901438 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61901618 | 61901732 | 61901618 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61902125 | 61902263 | 61902125 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61902949 | 61903068 | 61902949 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61903178 | 61903390 | 61903178 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61903473 | 61903535 | 61903473 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61903633 | 61903748 | 61903633 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61904035 | 61904093 | 61904035 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | CDS | 61904188 | 61904519 | 61904188 | ID=Msa0462740-mRNA-1:cds;Parent=Msa0462740-mRNA-1 |
| chr3_3 | three_prime_UTR | 61904520 | 61904683 | 61904520 | ID=Msa0462740-mRNA-1:three_prime_utr;Parent=Msa0462740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
