Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399810 | AES69383.1 | 90.909 | 66 | 6 | 0 | 3 | 68 | 2 | 67 | 4.98e-31 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399810 | G7IZD9 | 90.909 | 66 | 6 | 0 | 3 | 68 | 2 | 67 | 2.38e-31 | 113 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0399810 | -0.830519 | 2.805068e-55 | -8.615850e-47 |
| Msa0011920 | Msa0399810 | -0.858703 | 6.865546e-63 | -8.615850e-47 |
| Msa0030050 | Msa0399810 | 0.800963 | 1.125958e-48 | -8.615850e-47 |
| Msa0037180 | Msa0399810 | 0.853807 | 1.871616e-61 | -8.615850e-47 |
| Msa0037650 | Msa0399810 | -0.829523 | 4.907606e-55 | -8.615850e-47 |
| Msa0042520 | Msa0399810 | -0.802090 | 6.614968e-49 | -8.615850e-47 |
| Msa0052780 | Msa0399810 | 0.815960 | 7.071072e-52 | -8.615850e-47 |
| Msa0059080 | Msa0399810 | 0.807939 | 3.955893e-50 | -8.615850e-47 |
| Msa0067590 | Msa0399810 | -0.820485 | 6.690361e-53 | -8.615850e-47 |
| Msa0074860 | Msa0399810 | -0.808261 | 3.378923e-50 | -8.615850e-47 |
| Msa0075990 | Msa0399810 | -0.811279 | 7.581555e-51 | -8.615850e-47 |
| Msa0076640 | Msa0399810 | 0.825345 | 4.930194e-54 | -8.615850e-47 |
| Msa0081610 | Msa0399810 | -0.825089 | 5.667635e-54 | -8.615850e-47 |
| Msa0081700 | Msa0399810 | -0.812560 | 3.987158e-51 | -8.615850e-47 |
| Msa0091300 | Msa0399810 | -0.805876 | 1.080389e-49 | -8.615850e-47 |
| Msa0092220 | Msa0399810 | 0.835233 | 1.890807e-56 | -8.615850e-47 |
| Msa0097570 | Msa0399810 | 0.814853 | 1.246791e-51 | -8.615850e-47 |
| Msa0103830 | Msa0399810 | 0.808288 | 3.333230e-50 | -8.615850e-47 |
| Msa0127220 | Msa0399810 | -0.828414 | 9.111669e-55 | -8.615850e-47 |
| Msa0127350 | Msa0399810 | -0.804360 | 2.242549e-49 | -8.615850e-47 |
| Msa0127910 | Msa0399810 | -0.848775 | 4.943904e-60 | -8.615850e-47 |
| Msa0145430 | Msa0399810 | 0.833636 | 4.759833e-56 | -8.615850e-47 |
| Msa0150330 | Msa0399810 | 0.804075 | 2.570776e-49 | -8.615850e-47 |
| Msa0159240 | Msa0399810 | -0.829948 | 3.868908e-55 | -8.615850e-47 |
| Msa0163540 | Msa0399810 | -0.815865 | 7.427574e-52 | -8.615850e-47 |
| Msa0168770 | Msa0399810 | -0.811438 | 7.000548e-51 | -8.615850e-47 |
| Msa0173950 | Msa0399810 | -0.833096 | 6.488590e-56 | -8.615850e-47 |
| Msa0174060 | Msa0399810 | -0.847386 | 1.195090e-59 | -8.615850e-47 |
| Msa0177320 | Msa0399810 | 0.835346 | 1.770071e-56 | -8.615850e-47 |
| Msa0186400 | Msa0399810 | -0.806050 | 9.926641e-50 | -8.615850e-47 |
| Msa0206040 | Msa0399810 | -0.802728 | 4.888962e-49 | -8.615850e-47 |
| Msa0216150 | Msa0399810 | -0.833597 | 4.866470e-56 | -8.615850e-47 |
| Msa0386890 | Msa0399810 | 0.810748 | 9.878666e-51 | -8.615850e-47 |
| Msa0387630 | Msa0399810 | -0.805484 | 1.305500e-49 | -8.615850e-47 |
| Msa0389080 | Msa0399810 | -0.803383 | 3.577934e-49 | -8.615850e-47 |
| Msa0390590 | Msa0399810 | -0.850652 | 1.478154e-60 | -8.615850e-47 |
| Msa0399810 | Msa0399820 | 0.850648 | 1.481974e-60 | -8.615850e-47 |
| Msa0399810 | Msa0416090 | -0.802208 | 6.255731e-49 | -8.615850e-47 |
| Msa0399810 | Msa0456450 | -0.802461 | 5.548800e-49 | -8.615850e-47 |
| Msa0399810 | Msa0458220 | 0.802030 | 6.807509e-49 | -8.615850e-47 |
| Msa0399810 | Msa0502900 | -0.808618 | 2.835516e-50 | -8.615850e-47 |
| Msa0399810 | Msa0504700 | 0.812623 | 3.863388e-51 | -8.615850e-47 |
| Msa0399810 | Msa0523420 | -0.813406 | 2.600855e-51 | -8.615850e-47 |
| Msa0399810 | Msa0526520 | -0.839225 | 1.799229e-57 | -8.615850e-47 |
| Msa0399810 | Msa0528930 | 0.910281 | 2.232758e-82 | -8.615850e-47 |
| Msa0399810 | Msa0537340 | 0.806412 | 8.329184e-50 | -8.615850e-47 |
| Msa0399810 | Msa0545750 | -0.805479 | 1.308876e-49 | -8.615850e-47 |
| Msa0399810 | Msa0548160 | -0.813320 | 2.717021e-51 | -8.615850e-47 |
| Msa0399810 | Msa0558010 | -0.804128 | 2.506381e-49 | -8.615850e-47 |
| Msa0399810 | Msa0560280 | 0.825897 | 3.647731e-54 | -8.615850e-47 |
| Msa0399810 | Msa0563230 | -0.835196 | 1.931419e-56 | -8.615850e-47 |
| Msa0399810 | Msa0563440 | 0.817821 | 2.702304e-52 | -8.615850e-47 |
| Msa0399810 | Msa0569580 | -0.815928 | 7.191216e-52 | -8.615850e-47 |
| Msa0399810 | Msa0571900 | -0.820729 | 5.880291e-53 | -8.615850e-47 |
| Msa0399810 | Msa0572730 | -0.821902 | 3.154260e-53 | -8.615850e-47 |
| Msa0399810 | Msa0576020 | -0.818053 | 2.395090e-52 | -8.615850e-47 |
| Msa0399810 | Msa0581350 | 0.803980 | 2.690879e-49 | -8.615850e-47 |
| Msa0399810 | Msa0582270 | -0.810392 | 1.179055e-50 | -8.615850e-47 |
| Msa0399810 | Msa0588110 | -0.806472 | 8.091064e-50 | -8.615850e-47 |
| Msa0399810 | Msa0600350 | 0.806269 | 8.929054e-50 | -8.615850e-47 |
| Msa0399810 | Msa0602320 | -0.808698 | 2.726070e-50 | -8.615850e-47 |
| Msa0399810 | Msa0610240 | -0.803361 | 3.615806e-49 | -8.615850e-47 |
| Msa0399810 | Msa0617470 | -0.837284 | 5.691232e-57 | -8.615850e-47 |
| Msa0399810 | Msa0621670 | -0.831638 | 1.489843e-55 | -8.615850e-47 |
| Msa0399810 | Msa0626920 | 0.833635 | 4.762773e-56 | -8.615850e-47 |
| Msa0399810 | Msa0633730 | 0.833088 | 6.519857e-56 | -8.615850e-47 |
| Msa0399810 | Msa0638810 | 0.809137 | 2.195604e-50 | -8.615850e-47 |
| Msa0399810 | Msa0656570 | -0.806341 | 8.623249e-50 | -8.615850e-47 |
| Msa0399810 | Msa0658520 | -0.806852 | 6.725637e-50 | -8.615850e-47 |
| Msa0399810 | Msa0663220 | 0.831496 | 1.615363e-55 | -8.615850e-47 |
| Msa0399810 | Msa0672980 | 0.819927 | 8.981780e-53 | -8.615850e-47 |
| Msa0399810 | Msa0683200 | -0.811034 | 8.566375e-51 | -8.615850e-47 |
| Msa0399810 | Msa0686810 | 0.805400 | 1.359294e-49 | -8.615850e-47 |
| Msa0399810 | Msa0697510 | 0.817964 | 2.508678e-52 | -8.615850e-47 |
| Msa0399810 | Msa0697520 | 0.800687 | 1.282104e-48 | -8.615850e-47 |
| Msa0399810 | Msa0700250 | -0.832371 | 9.820712e-56 | -8.615850e-47 |
| Msa0399810 | Msa0701800 | -0.804185 | 2.438418e-49 | -8.615850e-47 |
| Msa0399810 | Msa0703430 | -0.801348 | 9.392961e-49 | -8.615850e-47 |
| Msa0399810 | Msa0779450 | -0.824738 | 6.859133e-54 | -8.615850e-47 |
| Msa0399810 | Msa0807100 | -0.805196 | 1.499956e-49 | -8.615850e-47 |
| Msa0399810 | Msa0826380 | 0.830265 | 3.236352e-55 | -8.615850e-47 |
| Msa0399810 | Msa0826450 | 0.815520 | 8.862516e-52 | -8.615850e-47 |
| Msa0399810 | Msa0829250 | -0.802902 | 4.499401e-49 | -8.615850e-47 |
| Msa0399810 | Msa0844970 | -0.801894 | 7.260354e-49 | -8.615850e-47 |
| Msa0399810 | Msa0868050 | -0.811705 | 6.123904e-51 | -8.615850e-47 |
| Msa0399810 | Msa0869320 | -0.818074 | 2.370067e-52 | -8.615850e-47 |
| Msa0399810 | Msa0931550 | -0.810979 | 8.803983e-51 | -8.615850e-47 |
| Msa0399810 | Msa0934290 | -0.834445 | 2.985736e-56 | -8.615850e-47 |
| Msa0399810 | Msa0956600 | -0.837038 | 6.580289e-57 | -8.615850e-47 |
| Msa0399810 | Msa0969380 | 0.808314 | 3.292181e-50 | -8.615850e-47 |
| Msa0399810 | Msa0969590 | 0.808530 | 2.959521e-50 | -8.615850e-47 |
| Msa0399810 | Msa0969720 | 0.812654 | 3.801846e-51 | -8.615850e-47 |
| Msa0399810 | Msa0971780 | -0.841903 | 3.582832e-58 | -8.615850e-47 |
| Msa0399810 | Msa1029030 | -0.800202 | 1.610155e-48 | -8.615850e-47 |
| Msa0399810 | Msa1050120 | 0.806720 | 7.172371e-50 | -8.615850e-47 |
| Msa0399810 | Msa1055520 | -0.835602 | 1.525341e-56 | -8.615850e-47 |
| Msa0399810 | Msa1078590 | -0.803090 | 4.114511e-49 | -8.615850e-47 |
| Msa0399810 | Msa1078760 | -0.802578 | 5.250160e-49 | -8.615850e-47 |
| Msa0399810 | Msa1088000 | -0.828036 | 1.123989e-54 | -8.615850e-47 |
| Msa0399810 | Msa1088400 | -0.822571 | 2.206456e-53 | -8.615850e-47 |
| Msa0399810 | Msa1104020 | -0.828437 | 8.993977e-55 | -8.615850e-47 |
| Msa0399810 | Msa1112210 | -0.805687 | 1.183875e-49 | -8.615850e-47 |
| Msa0399810 | Msa1117770 | -0.807100 | 5.961021e-50 | -8.615850e-47 |
| Msa0399810 | Msa1121720 | -0.824206 | 9.151306e-54 | -8.615850e-47 |
| Msa0399810 | Msa1129120 | -0.823852 | 1.107791e-53 | -8.615850e-47 |
| Msa0399810 | Msa1156120 | -0.823445 | 1.379809e-53 | -8.615850e-47 |
| Msa0399810 | Msa1169590 | -0.804078 | 2.567673e-49 | -8.615850e-47 |
| Msa0399810 | Msa1173150 | 0.814359 | 1.603694e-51 | -8.615850e-47 |
| Msa0399810 | Msa1199540 | -0.815726 | 7.973573e-52 | -8.615850e-47 |
| Msa0399810 | Msa1202470 | 0.837075 | 6.437830e-57 | -8.615850e-47 |
| Msa0399810 | Msa1213470 | -0.819678 | 1.023729e-52 | -8.615850e-47 |
| Msa0399810 | Msa1221270 | 0.800693 | 1.278685e-48 | -8.615850e-47 |
| Msa0399810 | Msa1236190 | -0.814551 | 1.454336e-51 | -8.615850e-47 |
| Msa0399810 | Msa1249600 | 0.821346 | 4.239122e-53 | -8.615850e-47 |
| Msa0399810 | Msa1254910 | 0.809436 | 1.894240e-50 | -8.615850e-47 |
| Msa0399810 | Msa1267390 | -0.800738 | 1.251852e-48 | -8.615850e-47 |
| Msa0399810 | Msa1273620 | -0.802790 | 4.746036e-49 | -8.615850e-47 |
| Msa0399810 | Msa1279200 | -0.803794 | 2.940701e-49 | -8.615850e-47 |
| Msa0399810 | Msa1300370 | -0.821848 | 3.245660e-53 | -8.615850e-47 |
| Msa0399810 | Msa1328680 | -0.801405 | 9.143870e-49 | -8.615850e-47 |
| Msa0399810 | Msa1342360 | -0.801189 | 1.012541e-48 | -8.615850e-47 |
| Msa0399810 | Msa1344930 | 0.805965 | 1.034502e-49 | -8.615850e-47 |
| Msa0399810 | Msa1356100 | -0.824725 | 6.908597e-54 | -8.615850e-47 |
| Msa0399810 | Msa1363310 | -0.842434 | 2.591539e-58 | -8.615850e-47 |
| Msa0399810 | Msa1367690 | -0.800342 | 1.507313e-48 | -8.615850e-47 |
| Msa0399810 | Msa1368400 | 0.810110 | 1.356359e-50 | -8.615850e-47 |
| Msa0399810 | Msa1373310 | -0.814192 | 1.746437e-51 | -8.615850e-47 |
| Msa0399810 | Msa1377980 | -0.834186 | 3.467837e-56 | -8.615850e-47 |
| Msa0399810 | Msa1384410 | -0.829169 | 5.982714e-55 | -8.615850e-47 |
| Msa0399810 | Msa1386580 | -0.841655 | 4.166715e-58 | -8.615850e-47 |
| Msa0399810 | Msa1388720 | -0.822387 | 2.434609e-53 | -8.615850e-47 |
| Msa0399810 | Msa1398450 | -0.821791 | 3.345290e-53 | -8.615850e-47 |
| Msa0399810 | Msa1402300 | 0.800818 | 1.205944e-48 | -8.615850e-47 |
| Msa0399810 | Msa1408280 | -0.832640 | 8.424965e-56 | -8.615850e-47 |
| Msa0399810 | Msa1408860 | -0.802949 | 4.400023e-49 | -8.615850e-47 |
| Msa0399810 | Msa1410480 | -0.806481 | 8.056454e-50 | -8.615850e-47 |
| Msa0399810 | Msa1410500 | -0.807304 | 5.397424e-50 | -8.615850e-47 |
| Msa0399810 | Msa1411370 | 0.804907 | 1.724380e-49 | -8.615850e-47 |
| Msa0399810 | Msa1413150 | 0.808683 | 2.744970e-50 | -8.615850e-47 |
| Msa0399810 | Msa1429470 | 0.807222 | 5.617285e-50 | -8.615850e-47 |
| Msa0399810 | Msa1432730 | -0.813033 | 3.140746e-51 | -8.615850e-47 |
| Msa0399810 | Msa1439860 | 0.801864 | 7.364489e-49 | -8.615850e-47 |
| Msa0399810 | Msa1456180 | -0.801183 | 1.015338e-48 | -8.615850e-47 |
| Msa0399810 | Msa1457390 | -0.806001 | 1.016718e-49 | -8.615850e-47 |
| Msa0399810 | Msa1459130 | -0.807887 | 4.058587e-50 | -8.615850e-47 |
| Msa0399810 | Msa1459920 | 0.827189 | 1.794455e-54 | -8.615850e-47 |
| Msa0399810 | Msa1464470 | -0.807953 | 3.929128e-50 | -8.615850e-47 |
| Msa0242790 | Msa0399810 | 0.806103 | 9.676351e-50 | -8.615850e-47 |
| Msa0246140 | Msa0399810 | 0.815961 | 7.069460e-52 | -8.615850e-47 |
| Msa0256540 | Msa0399810 | 0.811406 | 7.112603e-51 | -8.615850e-47 |
| Msa0294200 | Msa0399810 | 0.827973 | 1.163857e-54 | -8.615850e-47 |
| Msa0303900 | Msa0399810 | 0.803118 | 4.060030e-49 | -8.615850e-47 |
| Msa0327990 | Msa0399810 | -0.804732 | 1.876028e-49 | -8.615850e-47 |
| Msa0334320 | Msa0399810 | 0.804242 | 2.373538e-49 | -8.615850e-47 |
| Msa0334450 | Msa0399810 | -0.845785 | 3.269529e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0399810 | MtrunA17_Chr3g0087921 | 90.909 | 66 | 6 | 0 | 3 | 68 | 2 | 67 | 4.58e-35 | 113 |
| Msa0399810 | MtrunA17_Chr3g0087931 | 86.154 | 65 | 9 | 0 | 4 | 68 | 3 | 67 | 5.00e-32 | 105 |
| Msa0399810 | MtrunA17_Chr3g0087911 | 86.154 | 65 | 9 | 0 | 4 | 68 | 3 | 67 | 1.05e-24 | 87.0 |
| Msa0399810 | MtrunA17_Chr3g0087981 | 71.212 | 66 | 17 | 2 | 5 | 68 | 3 | 68 | 3.03e-23 | 83.6 |
| Msa0399810 | MtrunA17_Chr3g0088011 | 81.356 | 59 | 8 | 2 | 13 | 68 | 8 | 66 | 3.04e-23 | 83.2 |
| Msa0399810 | MtrunA17_Chr3g0088251 | 73.846 | 65 | 15 | 2 | 6 | 68 | 2 | 66 | 3.10e-23 | 83.2 |
| Msa0399810 | MtrunA17_Chr3g0088031 | 77.049 | 61 | 12 | 2 | 10 | 68 | 1 | 61 | 3.48e-23 | 83.2 |
| Msa0399810 | MtrunA17_Chr3g0088021 | 75.000 | 64 | 14 | 2 | 7 | 68 | 3 | 66 | 1.84e-22 | 81.3 |
| Msa0399810 | MtrunA17_Chr3g0087941 | 82.353 | 68 | 12 | 0 | 1 | 68 | 1 | 68 | 1.54e-21 | 79.0 |
| Msa0399810 | MtrunA17_Chr3g0088041 | 90.909 | 44 | 4 | 0 | 25 | 68 | 23 | 66 | 3.15e-21 | 78.2 |
| Msa0399810 | MtrunA17_Chr3g0088271 | 80.851 | 47 | 9 | 0 | 22 | 68 | 19 | 65 | 4.22e-20 | 75.5 |
| Msa0399810 | MtrunA17_Chr3g0088071 | 77.083 | 48 | 11 | 0 | 21 | 68 | 19 | 66 | 1.51e-19 | 73.9 |
| Msa0399810 | MtrunA17_Chr3g0088081 | 85.714 | 42 | 6 | 0 | 27 | 68 | 24 | 65 | 1.56e-19 | 73.9 |
| Msa0399810 | MtrunA17_Chr3g0088001 | 75.385 | 65 | 15 | 1 | 5 | 68 | 3 | 67 | 2.40e-19 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 18 sgRNAs with CRISPR-Local
Find 18 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACAATGAAGTTGTTCTT+TGG | 0.336597 | 3_2:+23409225 | Msa0399810:CDS |
| CCAGCATCAGGACCTGGTGC+TGG | 0.401353 | 3_2:-23409306 | Msa0399800:intron |
| GCAAGTTCTGTGGCTATGAT+TGG | 0.405849 | 3_2:+23409345 | Msa0399810:CDS |
| CCAGCACCAGGTCCTGATGC+TGG | 0.415553 | 3_2:+23409306 | Msa0399810:CDS |
| GATCCGGCAGCTCCAGCATC+AGG | 0.425147 | 3_2:-23409318 | Msa0399800:intron |
| GGTCCTGATGCTGGAGCTGC+CGG | 0.466366 | 3_2:+23409315 | Msa0399810:CDS |
| CACAGAACTTGCAACAGATC+CGG | 0.484083 | 3_2:-23409334 | Msa0399800:intron |
| CGTCTTCGCCGCTGTAGTCT+CGG | 0.497571 | 3_2:+23409257 | Msa0399810:CDS |
| CTAACGACGGACTAAGGTCT+TGG | 0.503269 | 3_2:-23409281 | Msa0399800:intron |
| CTGGAGCTAACGACGGACTA+AGG | 0.507562 | 3_2:-23409287 | Msa0399800:intron |
| TAACGACGGACTAAGGTCTT+GGG | 0.525930 | 3_2:-23409280 | Msa0399800:intron |
| GCAGCTCCAGCATCAGGACC+TGG | 0.550326 | 3_2:-23409312 | Msa0399800:intron |
| CCGTCGTTAGCTCCAGCACC+AGG | 0.556130 | 3_2:+23409294 | Msa0399810:CDS |
| CGGATCTGTTGCAAGTTCTG+TGG | 0.613339 | 3_2:+23409335 | Msa0399810:CDS |
| AAAGAACAACTTCATTGTGG+TGG | 0.635652 | 3_2:-23409223 | Msa0399800:CDS |
| ACCAAAGAACAACTTCATTG+TGG | 0.652153 | 3_2:-23409226 | Msa0399800:CDS |
| CCTGGTGCTGGAGCTAACGA+CGG | 0.671877 | 3_2:-23409294 | Msa0399800:intron |
| GTCTTGGGCCGAGACTACAG+CGG | 0.726320 | 3_2:-23409265 | Msa0399800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAAGAACAACTTCATTGTGG+TGG | - | chr3_2:23409226-23409245 | Msa0399800:CDS | 35.0% | |
| ACCACAATGAAGTTGTTCTT+TGG | + | chr3_2:23409225-23409244 | Msa0399810:CDS | 35.0% | |
| ACCAAAGAACAACTTCATTG+TGG | - | chr3_2:23409229-23409248 | Msa0399800:CDS | 35.0% | |
| !! | TAACGACGGACTAAGGTCTT+GGG | - | chr3_2:23409283-23409302 | Msa0399800:intron | 45.0% |
| CACAGAACTTGCAACAGATC+CGG | - | chr3_2:23409337-23409356 | Msa0399800:intron | 45.0% | |
| GCAAGTTCTGTGGCTATGAT+TGG | + | chr3_2:23409345-23409364 | Msa0399810:CDS | 45.0% | |
| !! | CTAACGACGGACTAAGGTCT+TGG | - | chr3_2:23409284-23409303 | Msa0399800:intron | 50.0% |
| CGGATCTGTTGCAAGTTCTG+TGG | + | chr3_2:23409335-23409354 | Msa0399810:CDS | 50.0% | |
| !! | CTGGAGCTAACGACGGACTA+AGG | - | chr3_2:23409290-23409309 | Msa0399800:intron | 55.0% |
| CGTCTTCGCCGCTGTAGTCT+CGG | + | chr3_2:23409257-23409276 | Msa0399810:CDS | 60.0% | |
| GTCTTGGGCCGAGACTACAG+CGG | - | chr3_2:23409268-23409287 | Msa0399800:intron | 60.0% | |
| ! | CCTGGTGCTGGAGCTAACGA+CGG | - | chr3_2:23409297-23409316 | Msa0399800:intron | 60.0% |
| CCGTCGTTAGCTCCAGCACC+AGG | + | chr3_2:23409294-23409313 | Msa0399810:CDS | 65.0% | |
| CCAGCATCAGGACCTGGTGC+TGG | - | chr3_2:23409309-23409328 | Msa0399800:intron | 65.0% | |
| CCAGCACCAGGTCCTGATGC+TGG | + | chr3_2:23409306-23409325 | Msa0399810:CDS | 65.0% | |
| GCAGCTCCAGCATCAGGACC+TGG | - | chr3_2:23409315-23409334 | Msa0399800:intron | 65.0% | |
| GGTCCTGATGCTGGAGCTGC+CGG | + | chr3_2:23409315-23409334 | Msa0399810:CDS | 65.0% | |
| GATCCGGCAGCTCCAGCATC+AGG | - | chr3_2:23409321-23409340 | Msa0399800:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 23409204 | 23409410 | 23409204 | ID=Msa0399810;Name=Msa0399810 |
| chr3_2 | mRNA | 23409204 | 23409410 | 23409204 | ID=Msa0399810-mRNA-1;Parent=Msa0399810;Name=Msa0399810-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|68 |
| chr3_2 | exon | 23409204 | 23409410 | 23409204 | ID=Msa0399810-mRNA-1:exon:4969;Parent=Msa0399810-mRNA-1 |
| chr3_2 | CDS | 23409204 | 23409410 | 23409204 | ID=Msa0399810-mRNA-1:cds;Parent=Msa0399810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
