AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334450 MtrunA17_Chr2g0317731 93.064 173 11 1 1 172 1 173 1.06e-115 325
Msa0334450 MtrunA17_Chr8g0360031 65.385 182 47 6 1 172 1 176 2.26e-75 223
Msa0334450 MtrunA17_Chr3g0125821 65.600 125 42 1 48 172 50 173 5.13e-61 186
Msa0334450 MtrunA17_Chr4g0044731 53.125 96 45 0 77 172 73 168 2.66e-37 126
Msa0334450 MtrunA17_Chr2g0317721 48.039 102 53 0 69 170 41 142 6.17e-33 114
Msa0334450 MtrunA17_Chr2g0317701 52.941 102 47 1 69 169 46 147 6.06e-32 112
Msa0334450 MtrunA17_Chr2g0317711 48.077 104 53 1 69 172 41 143 8.20e-28 101
Msa0334450 MtrunA17_Chr1g0211871 38.532 109 59 2 69 172 70 175 4.03e-23 90.5
Msa0334450 MtrunA17_Chr1g0201781 33.981 103 68 0 67 169 60 162 3.34e-20 82.4
Msa0334450 MtrunA17_Chr2g0317691 51.562 64 31 0 109 172 3 66 5.43e-20 79.7
Msa0334450 MtrunA17_Chr5g0404831 43.333 90 49 2 83 172 28 115 9.23e-17 72.4
Msa0334450 MtrunA17_Chr4g0052481 42.500 80 43 2 81 158 77 155 5.84e-16 71.2
Msa0334450 MtrunA17_Chr7g0216481 36.145 83 51 2 88 170 51 131 7.89e-16 70.1
Msa0334450 MtrunA17_Chr1g0155721 42.254 71 40 1 88 158 31 100 1.25e-14 66.6
Msa0334450 MtrunA17_Chr8g0393201 41.975 81 45 2 88 168 252 330 6.14e-14 68.2
Msa0334450 MtrunA17_Chr3g0142051 40.845 71 41 1 88 158 31 100 6.47e-14 64.7
Msa0334450 MtrunA17_Chr5g0438731 32.990 97 63 1 60 156 183 277 7.33e-13 65.5
Msa0334450 MtrunA17_Chr5g0438731 35.789 95 60 1 57 150 49 143 7.24e-12 62.8
Msa0334450 MtrunA17_Chr2g0287471 32.692 104 70 0 47 150 8 111 6.45e-11 59.7
Msa0334450 MtrunA17_Chr1g0164481 30.000 90 61 1 83 170 90 179 8.33e-11 57.8
Msa0334450 MtrunA17_Chr7g0245141 28.440 109 65 3 62 158 11 118 8.95e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334450 AT3G15360.1 60.510 157 58 2 20 172 35 191 1.56e-64 196
Msa0334450 AT1G03680.1 53.548 155 68 3 18 172 29 179 9.97e-56 174
Msa0334450 AT4G03520.1 52.229 157 67 4 20 172 33 185 3.50e-55 172
Msa0334450 AT2G15570.1 50.450 111 52 1 62 172 64 171 2.15e-37 127
Msa0334450 AT2G15570.2 49.550 111 54 1 62 172 64 172 3.27e-37 126
Msa0334450 AT4G03520.2 63.380 71 26 0 102 172 1 71 1.59e-29 103
Msa0334450 AT1G76760.1 36.792 106 67 0 67 172 63 168 3.98e-23 90.5
Msa0334450 AT1G43560.1 32.927 164 94 3 14 172 11 163 2.30e-22 88.6
Msa0334450 AT1G50320.1 33.577 137 76 2 38 172 53 176 3.61e-21 85.9
Msa0334450 AT1G19730.1 42.105 76 44 0 83 158 26 101 4.29e-18 75.9
Msa0334450 AT4G12170.1 40.860 93 55 0 69 161 51 143 2.57e-17 75.1
Msa0334450 AT3G51030.1 44.444 90 48 2 83 172 26 113 5.03e-17 73.2
Msa0334450 AT5G42980.1 39.773 88 51 2 83 170 25 110 1.02e-16 72.4
Msa0334450 AT2G35010.2 38.824 85 49 2 76 158 97 180 9.29e-15 68.9
Msa0334450 AT2G35010.1 38.824 85 49 2 76 158 97 180 9.29e-15 68.9
Msa0334450 AT5G39950.1 36.471 85 50 2 77 158 36 119 1.82e-14 67.0
Msa0334450 AT1G52990.1 40.741 81 47 1 82 161 223 303 5.69e-14 68.6
Msa0334450 AT1G45145.1 36.842 76 47 1 83 158 25 99 1.34e-13 64.3
Msa0334450 AT1G31020.1 35.065 77 47 2 83 157 69 144 3.32e-12 61.6
Msa0334450 AT2G32920.1 28.467 137 87 4 13 146 113 241 4.86e-12 63.5
Msa0334450 AT2G32920.1 36.585 82 52 0 69 150 32 113 6.09e-11 60.5
Msa0334450 AT1G04980.1 26.984 126 89 1 21 146 124 246 5.98e-12 63.2
Msa0334450 AT1G04980.1 36.585 82 52 0 69 150 34 115 3.91e-11 60.8
Msa0334450 AT3G06730.1 27.545 167 106 6 1 155 1 164 7.86e-12 61.2
Msa0334450 AT3G54960.1 33.010 103 68 1 68 170 100 201 8.81e-12 62.8
Msa0334450 AT3G54960.2 33.010 103 68 1 68 170 100 201 1.28e-11 62.4
Msa0334450 AT1G69880.1 33.803 71 46 1 88 158 62 131 4.98e-11 58.2
Msa0334450 AT1G59730.1 33.673 98 60 3 76 170 31 126 6.06e-11 57.4
Msa0334450 AT4G04950.1 28.750 80 56 1 83 162 19 97 9.30e-11 59.7

Find 75 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTGTGTTGGTCGAATTC+TGG 0.102485 2_4:+52789682 Msa0334450:CDS
CTTTCTTAAATAATCGTTTA+TGG 0.132258 2_4:+52790044 Msa0334450:three_prime_UTR
CGACGATTGGAGAGCGAATA+AGG 0.177500 2_4:-52785935 None:intergenic
CAAACTTGAGATAAGATAAT+TGG 0.228833 2_4:-52790012 None:intergenic
CTTTGCTAGCTCATCAACTA+TGG 0.233293 2_4:-52789739 None:intergenic
CTTCTATTACTGATGGAAAT+TGG 0.291432 2_4:+52789634 Msa0334450:CDS
GCTTTATGATATGTCGCTAA+TGG 0.299425 2_4:-52789990 None:intergenic
TCCTGTGTTGGTCGAATTCT+GGG 0.312332 2_4:+52789683 Msa0334450:CDS
TTTATGGTGTTGTATAGTTA+TGG 0.316211 2_4:+52790060 Msa0334450:three_prime_UTR
CAATTATCTTATCTCAAGTT+TGG 0.319499 2_4:+52790013 Msa0334450:three_prime_UTR
ATTTGTGGTCAATGTTGCTT+TGG 0.336888 2_4:-52789904 None:intergenic
CTTTATGATATGTCGCTAAT+GGG 0.369840 2_4:-52789989 None:intergenic
GAAAAGAAAGATACAGTTAT+TGG 0.371482 2_4:+52789873 Msa0334450:CDS
GACGATTGGAGAGCGAATAA+GGG 0.423584 2_4:-52785934 None:intergenic
CCTTCAGTTGCTACTCGGTA+TGG 0.423871 2_4:+52789810 Msa0334450:CDS
TTATGGTGTTGTATAGTTAT+GGG 0.430717 2_4:+52790061 Msa0334450:three_prime_UTR
TTTGTGGTCAATGTTGCTTT+GGG 0.452585 2_4:-52789903 None:intergenic
CGCAGACGAGTGGCGGAGAC+TGG 0.459267 2_4:-52786011 None:intergenic
AAAATGCCAGTGATGTCAAA+TGG 0.470133 2_4:-52790170 None:intergenic
CGCCGCTGGTCTCTCTCACT+CGG 0.477237 2_4:+52785826 Msa0334450:five_prime_UTR
GAGGAAACGCGGCAGTGCTC+CGG 0.477586 2_4:-52785965 None:intergenic
CTCCAATCGTCGCTTCTCGC+CGG 0.477652 2_4:+52785946 Msa0334450:CDS
TATGGGATGCTTCCATATTG+TGG 0.480198 2_4:+52790078 Msa0334450:three_prime_UTR
TTCTTTGTCTGCCATCTCAC+AGG 0.484524 2_4:-52789938 None:intergenic
TGAAATCCATTTGACATCAC+TGG 0.489313 2_4:+52790164 Msa0334450:three_prime_UTR
CGTGATAACACAGCCGTTGA+AGG 0.489745 2_4:+52786089 Msa0334450:CDS
CTCCGGCGAGAAGCGACGAT+TGG 0.491040 2_4:-52785948 None:intergenic
CTTCAGTTGCTACTCGGTAT+GGG 0.494438 2_4:+52789811 Msa0334450:CDS
AGCTTGAGGCCGGTGTATTG+AGG 0.508457 2_4:-52785984 None:intergenic
GACTGGTCGGAGCTTGAGGC+CGG 0.510218 2_4:-52785994 None:intergenic
CAGACAAAGAAGGCTTCAGC+TGG 0.512145 2_4:+52789950 Msa0334450:three_prime_UTR
ATTGCAGAGAATCGTAGCTC+TGG 0.518630 2_4:-52785882 None:intergenic
GCAGTGGCTTCTATTACTGA+TGG 0.533416 2_4:+52789627 Msa0334450:intron
TTCTTGAAGAAAATGACAGT+TGG 0.533751 2_4:-52789846 None:intergenic
AACCGAACCCTAACCTTCAA+CGG 0.535342 2_4:-52786102 None:intergenic
GCTACGATTCTCTGCAATCA+TGG 0.535366 2_4:+52785887 Msa0334450:exon
TTTGCTAGCTCATCAACTAT+GGG 0.536511 2_4:-52789738 None:intergenic
GGAAGATAATATTGTTTCTG+TGG 0.542760 2_4:-52785766 None:intergenic
CGGAGACTGGTCGGAGCTTG+AGG 0.546843 2_4:-52785998 None:intergenic
TATGGGATGAATCATGCGGC+AGG 0.560107 2_4:-52789721 None:intergenic
TGGTCGAATTCTGGGCTCCA+TGG 0.560925 2_4:+52789691 Msa0334450:CDS
AGAATCTGAGATTCCTGTGT+TGG 0.562341 2_4:+52789671 Msa0334450:CDS
TCGAATGTTGTTCGTCGCGG+TGG 0.566799 2_4:+52786047 Msa0334450:CDS
ACCGCGACGAACAACATTCG+AGG 0.568696 2_4:-52786045 None:intergenic
TGTGAGATGGCAGACAAAGA+AGG 0.570704 2_4:+52789940 Msa0334450:exon
CGGTGGAACCGTCGTGTGTG+AGG 0.573215 2_4:+52786064 Msa0334450:CDS
GGAGAAGGATTCGAGTTGTA+CGG 0.579686 2_4:-52785913 None:intergenic
TAATATTGTTTCTGTGGACG+AGG 0.580418 2_4:-52785760 None:intergenic
GAATTCTGGGCTCCATGGTG+TGG 0.587228 2_4:+52789696 Msa0334450:CDS
AATCTCAGATTCTATGACAA+GGG 0.589830 2_4:-52789661 None:intergenic
GACGAGTGGCGGAGACTGGT+CGG 0.590163 2_4:-52786007 None:intergenic
GCCCAGAATTCGACCAACAC+AGG 0.591293 2_4:-52789684 None:intergenic
ATGCGGCAGGGACCACACCA+TGG 0.592003 2_4:-52789708 None:intergenic
CGACGAACAACATTCGAGGC+GGG 0.593567 2_4:-52786041 None:intergenic
CAGTCTCCGCCACTCGTCTG+CGG 0.594319 2_4:+52786012 Msa0334450:CDS
TGGAGAGCGAATAAGGGAGA+AGG 0.600317 2_4:-52785928 None:intergenic
TTGACTCCGCAGACGAGTGG+CGG 0.600852 2_4:-52786018 None:intergenic
GAGCTAGCAAAGGAATATGC+GGG 0.603263 2_4:+52789750 Msa0334450:CDS
AAAGTCCTTCAGTTGCTACT+CGG 0.607500 2_4:+52789805 Msa0334450:CDS
GGGTTGACTCCGCAGACGAG+TGG 0.610441 2_4:-52786021 None:intergenic
CATAGTTGATGAGCTAGCAA+AGG 0.630561 2_4:+52789740 Msa0334450:CDS
GCCTCGAATGTTGTTCGTCG+CGG 0.633957 2_4:+52786044 Msa0334450:CDS
TTCAACTTGATAAAATAGAG+CGG 0.635619 2_4:-52790145 None:intergenic
CCATACCGAGTAGCAACTGA+AGG 0.641503 2_4:-52789810 None:intergenic
TTGTGGAATATATTAGCTAG+CGG 0.651557 2_4:+52785719 None:intergenic
ATGGGATGAATCATGCGGCA+GGG 0.655515 2_4:-52789720 None:intergenic
TGAGCTAGCAAAGGAATATG+CGG 0.658244 2_4:+52789749 Msa0334450:CDS
CAACTATGGGATGAATCATG+CGG 0.659788 2_4:-52789725 None:intergenic
GAATCTCAGATTCTATGACA+AGG 0.685810 2_4:-52789662 None:intergenic
ATCACGAGCCTCACACACGA+CGG 0.693040 2_4:-52786072 None:intergenic
GCCGGTGTATTGAGGAAACG+CGG 0.696706 2_4:-52785976 None:intergenic
GCCGCGTTTCCTCAATACAC+CGG 0.698489 2_4:+52785975 Msa0334450:CDS
GCGACGAACAACATTCGAGG+CGG 0.707036 2_4:-52786042 None:intergenic
GAAGGATTCGAGTTGTACGG+TGG 0.711676 2_4:-52785910 None:intergenic
GACCGAGTGAGAGAGACCAG+CGG 0.726317 2_4:-52785828 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATGAATTTCTAAATT+TGG - chr2_4:52788088-52788107 None:intergenic 10.0%
!! AAAAAATTGAAAAACATAAA+TGG - chr2_4:52789446-52789465 None:intergenic 10.0%
!! AAAAGAATAATACACTAAAA+GGG - chr2_4:52786379-52786398 None:intergenic 15.0%
!! TAAAAGAATAATACACTAAA+AGG - chr2_4:52786380-52786399 None:intergenic 15.0%
!!! ATAAATATTTATTTGGAACA+TGG - chr2_4:52787100-52787119 None:intergenic 15.0%
!!! ATTTTTTTTGCCTTTAATTT+CGG + chr2_4:52788584-52788603 Msa0334450:intron 15.0%
!!! TAGTTAAACTTATGTTTTAT+TGG + chr2_4:52789599-52789618 Msa0334450:intron 15.0%
!!! TAGTATCTGTTGTTTTTATT+TGG - chr2_4:52785790-52785809 None:intergenic 20.0%
!!! TTTGAAACTATTAACTAGTT+AGG - chr2_4:52787073-52787092 None:intergenic 20.0%
!!! TTATTGAAATTAAGCCATTT+TGG + chr2_4:52787116-52787135 Msa0334450:intron 20.0%
!! AACCTAACATTATGAATATT+AGG - chr2_4:52787185-52787204 None:intergenic 20.0%
!! TATGAATTTCTAAATTTGGT+AGG - chr2_4:52788084-52788103 None:intergenic 20.0%
!!! GAAGATTTTTAGTAATCAAT+TGG + chr2_4:52788511-52788530 Msa0334450:intron 20.0%
!! ACAAATACAAAGTAAGATAT+TGG - chr2_4:52789115-52789134 None:intergenic 20.0%
!! TAAAAATAAAATCAGAGTTC+TGG - chr2_4:52789206-52789225 None:intergenic 20.0%
!! CTAAAAATATATGTTCAAGT+TGG - chr2_4:52789266-52789285 None:intergenic 20.0%
!! CTTTCTTAAATAATCGTTTA+TGG + chr2_4:52790044-52790063 Msa0334450:three_prime_UTR 20.0%
!! TTATCTAAAAAACCACAATA+TGG - chr2_4:52790093-52790112 None:intergenic 20.0%
!!! AAAAATTTAAGGCAACATAT+TGG - chr2_4:52790125-52790144 None:intergenic 20.0%
! ATAACATTGACATTAACTGA+CGG + chr2_4:52786443-52786462 Msa0334450:intron 25.0%
! CACTATATATATATATCACG+TGG + chr2_4:52786898-52786917 Msa0334450:intron 25.0%
! TAACTAGTTAGGAATGTATT+TGG - chr2_4:52787062-52787081 None:intergenic 25.0%
! CATATATGTCAGTTATTCAA+GGG - chr2_4:52787566-52787585 None:intergenic 25.0%
! TCATATATGTCAGTTATTCA+AGG - chr2_4:52787567-52787586 None:intergenic 25.0%
! TATAACTCATCTAATCAACT+AGG - chr2_4:52787625-52787644 None:intergenic 25.0%
! AGAACTTCCTTTAATAAAGA+TGG + chr2_4:52787717-52787736 Msa0334450:intron 25.0%
!! AGTATTAGTGTTGGAATTAA+AGG + chr2_4:52787782-52787801 Msa0334450:intron 25.0%
! AGCTACTACCTTATTAATTT+AGG + chr2_4:52787879-52787898 Msa0334450:intron 25.0%
!!! GTGTTTTTTTTTTTCTGTTC+TGG - chr2_4:52788251-52788270 None:intergenic 25.0%
! ATAAATAATTAACGTGAGAG+AGG + chr2_4:52788390-52788409 Msa0334450:intron 25.0%
! TAAATAATTAACGTGAGAGA+GGG + chr2_4:52788391-52788410 Msa0334450:intron 25.0%
! ATTTCCCTAATTATTGATAG+TGG + chr2_4:52788479-52788498 Msa0334450:intron 25.0%
! AAAGCCACTATCAATAATTA+GGG - chr2_4:52788486-52788505 None:intergenic 25.0%
! TAAAGCCACTATCAATAATT+AGG - chr2_4:52788487-52788506 None:intergenic 25.0%
!!! ATTATTGATAGTGGCTTTAT+TGG + chr2_4:52788488-52788507 Msa0334450:intron 25.0%
!!! TTATTGATAGTGGCTTTATT+GGG + chr2_4:52788489-52788508 Msa0334450:intron 25.0%
!! ATTCTTCTTATTCTCTGAAA+CGG - chr2_4:52788557-52788576 None:intergenic 25.0%
!!! AACGTTTTTTCCGAAATTAA+AGG - chr2_4:52788597-52788616 None:intergenic 25.0%
!!! AAAAACGTTTTGAATCAATC+CGG + chr2_4:52788608-52788627 Msa0334450:intron 25.0%
!! ATGTTTTGCTAACCAAATTT+CGG - chr2_4:52788656-52788675 None:intergenic 25.0%
! TAACACCATAATTACTTCTA+GGG - chr2_4:52788910-52788929 None:intergenic 25.0%
!!! TATTAGATTTTGAAGCATTC+AGG + chr2_4:52788995-52789014 Msa0334450:intron 25.0%
! GTACTAATACTAGTATTTGT+TGG + chr2_4:52789035-52789054 Msa0334450:intron 25.0%
! TTTCAATAAGCATGCTAAAA+TGG + chr2_4:52789143-52789162 Msa0334450:intron 25.0%
!! TTTTTGATGCATTTATCATC+TGG + chr2_4:52789461-52789480 Msa0334450:intron 25.0%
! GAAAAGAAAGATACAGTTAT+TGG + chr2_4:52789873-52789892 Msa0334450:CDS 25.0%
!! CAGGAATTTTTCTATATTTG+TGG - chr2_4:52789922-52789941 None:intergenic 25.0%
! CAAACTTGAGATAAGATAAT+TGG - chr2_4:52790015-52790034 None:intergenic 25.0%
! CAATTATCTTATCTCAAGTT+TGG + chr2_4:52790013-52790032 Msa0334450:three_prime_UTR 25.0%
!!! TTTATGGTGTTGTATAGTTA+TGG + chr2_4:52790060-52790079 Msa0334450:three_prime_UTR 25.0%
!!! TTATGGTGTTGTATAGTTAT+GGG + chr2_4:52790061-52790080 Msa0334450:three_prime_UTR 25.0%
! AAATAGAGCGGAAAAATTTA+AGG - chr2_4:52790136-52790155 None:intergenic 25.0%
! TTCAACTTGATAAAATAGAG+CGG - chr2_4:52790148-52790167 None:intergenic 25.0%
!! GGAAGATAATATTGTTTCTG+TGG - chr2_4:52785769-52785788 None:intergenic 30.0%
TTAGATCTGTTGAAAGTGAT+TGG + chr2_4:52786162-52786181 Msa0334450:intron 30.0%
TAGGTGACTTACAAAACTAA+CGG - chr2_4:52786248-52786267 None:intergenic 30.0%
!!! TTTTAAAACTCTAGCAACTG+GGG - chr2_4:52786283-52786302 None:intergenic 30.0%
!!! CTTTTAAAACTCTAGCAACT+GGG - chr2_4:52786284-52786303 None:intergenic 30.0%
CTGAAATTTAGTGTACGTAT+TGG + chr2_4:52786304-52786323 Msa0334450:intron 30.0%
TAACATTGACATTAACTGAC+GGG + chr2_4:52786444-52786463 Msa0334450:intron 30.0%
TTTCATGTGTTTCGGATTAT+GGG - chr2_4:52786499-52786518 None:intergenic 30.0%
ATTTCATGTGTTTCGGATTA+TGG - chr2_4:52786500-52786519 None:intergenic 30.0%
TGCGTATATTTCATGTGTTT+CGG - chr2_4:52786507-52786526 None:intergenic 30.0%
CTTCAATTGTAGACATTGAA+AGG + chr2_4:52786661-52786680 Msa0334450:intron 30.0%
AGTCTACATTGCACTAAAAA+GGG + chr2_4:52786752-52786771 Msa0334450:intron 30.0%
TGGGTAAAAAATTAGCATGT+GGG - chr2_4:52786969-52786988 None:intergenic 30.0%
GGCCTAATATTCATAATGTT+AGG + chr2_4:52787180-52787199 Msa0334450:intron 30.0%
ATTGAACATCATCACACATA+AGG + chr2_4:52787238-52787257 Msa0334450:intron 30.0%
AAAAACTGCATAACATGCTT+AGG - chr2_4:52787324-52787343 None:intergenic 30.0%
! TAAGCATGTTATGCAGTTTT+TGG + chr2_4:52787323-52787342 Msa0334450:intron 30.0%
! TTTCACTAAATGCCACTTAA+TGG + chr2_4:52787346-52787365 Msa0334450:intron 30.0%
! TTCACTAAATGCCACTTAAT+GGG + chr2_4:52787347-52787366 Msa0334450:intron 30.0%
AAAATAACAGACCCATTAAG+TGG - chr2_4:52787361-52787380 None:intergenic 30.0%
GTTGCTTACTCTAATAGTTA+TGG + chr2_4:52787385-52787404 Msa0334450:intron 30.0%
TTGTGTTGAGTCTAATTACA+TGG + chr2_4:52787665-52787684 Msa0334450:intron 30.0%
CTGTTTATGAGTATTAGTGT+TGG + chr2_4:52787773-52787792 Msa0334450:intron 30.0%
AAGCTTCAAAATCATCTCAA+TGG + chr2_4:52788276-52788295 Msa0334450:intron 30.0%
CTTCTTCAACATGAATTGTT+TGG - chr2_4:52788308-52788327 None:intergenic 30.0%
CAAACAATTCATGTTGAAGA+AGG + chr2_4:52788306-52788325 Msa0334450:intron 30.0%
GTCATAGTCACATTAAAAGA+AGG + chr2_4:52788328-52788347 Msa0334450:intron 30.0%
TAGTCACATTAAAAGAAGGA+AGG + chr2_4:52788332-52788351 Msa0334450:intron 30.0%
ATTGTAATCTGCAGAACTAA+TGG + chr2_4:52788355-52788374 Msa0334450:intron 30.0%
TTGTAATCTGCAGAACTAAT+GGG + chr2_4:52788356-52788375 Msa0334450:intron 30.0%
AGGTAAAGTTCCATGATTTA+TGG + chr2_4:52788444-52788463 Msa0334450:intron 30.0%
GGTAAAGTTCCATGATTTAT+GGG + chr2_4:52788445-52788464 Msa0334450:intron 30.0%
!! AAAACGTTTTGAATCAATCC+GGG + chr2_4:52788609-52788628 Msa0334450:intron 30.0%
! TGTTTTGCTAACCAAATTTC+GGG - chr2_4:52788655-52788674 None:intergenic 30.0%
TTGGTTAGCAAAACATAAAC+CGG + chr2_4:52788660-52788679 Msa0334450:intron 30.0%
CATTTCCCTAGAAGTAATTA+TGG + chr2_4:52788902-52788921 Msa0334450:intron 30.0%
CTAACACCATAATTACTTCT+AGG - chr2_4:52788911-52788930 None:intergenic 30.0%
!! ACTAGTATTTGTTGGTAACT+TGG + chr2_4:52789043-52789062 Msa0334450:intron 30.0%
CAAAGTAAGATATTGGTCAA+AGG - chr2_4:52789108-52789127 None:intergenic 30.0%
! TGCTAAAATGGTATAGCTTT+TGG + chr2_4:52789155-52789174 Msa0334450:intron 30.0%
!! TGTTTTATTGGATATTGCAG+TGG + chr2_4:52789611-52789630 Msa0334450:intron 30.0%
CTTCTATTACTGATGGAAAT+TGG + chr2_4:52789634-52789653 Msa0334450:CDS 30.0%
AATCTCAGATTCTATGACAA+GGG - chr2_4:52789664-52789683 None:intergenic 30.0%
TTCTTGAAGAAAATGACAGT+TGG - chr2_4:52789849-52789868 None:intergenic 30.0%
!!! ACTGTCATTTTCTTCAAGAA+CGG + chr2_4:52789849-52789868 Msa0334450:CDS 30.0%
ATAGAAAAATTCCTGTGAGA+TGG + chr2_4:52789927-52789946 Msa0334450:exon 30.0%
CTTTATGATATGTCGCTAAT+GGG - chr2_4:52789992-52790011 None:intergenic 30.0%
!! TAATATTGTTTCTGTGGACG+AGG - chr2_4:52785763-52785782 None:intergenic 35.0%
ATTCTTACTCACAGTCACAT+AGG - chr2_4:52786198-52786217 None:intergenic 35.0%
ACTGGGGGAAAAAAAAATCT+AGG - chr2_4:52786267-52786286 None:intergenic 35.0%
! TTTAAAACTCTAGCAACTGG+GGG - chr2_4:52786282-52786301 None:intergenic 35.0%
!!! GCTTTTAAAACTCTAGCAAC+TGG - chr2_4:52786285-52786304 None:intergenic 35.0%
TTGAAAGGCCTCTCAATTAT+AGG + chr2_4:52786676-52786695 Msa0334450:intron 35.0%
GAGTCTACATTGCACTAAAA+AGG + chr2_4:52786751-52786770 Msa0334450:intron 35.0%
CTCTTATGTAAAACAGGGTA+AGG - chr2_4:52786852-52786871 None:intergenic 35.0%
! CTTACCCTGTTTTACATAAG+AGG + chr2_4:52786850-52786869 Msa0334450:intron 35.0%
ACAGCCTCTTATGTAAAACA+GGG - chr2_4:52786857-52786876 None:intergenic 35.0%
AACAGCCTCTTATGTAAAAC+AGG - chr2_4:52786858-52786877 None:intergenic 35.0%
GTGGGTAAAAAATTAGCATG+TGG - chr2_4:52786970-52786989 None:intergenic 35.0%
!!! ATGCTAATTTTTTACCCACG+TGG + chr2_4:52786971-52786990 Msa0334450:intron 35.0%
! TCTTTAAGAGCCATACAAAC+TGG + chr2_4:52787020-52787039 Msa0334450:intron 35.0%
AAAGCCCCAAACCAAATATT+GGG - chr2_4:52787213-52787232 None:intergenic 35.0%
TAAAGCCCCAAACCAAATAT+TGG - chr2_4:52787214-52787233 None:intergenic 35.0%
TAAGGTGAAGTTGTTAACCA+TGG + chr2_4:52787256-52787275 Msa0334450:intron 35.0%
AAGGTGAAGTTGTTAACCAT+GGG + chr2_4:52787257-52787276 Msa0334450:intron 35.0%
!!! CCATTTTTTCTATTTGCCCA+TGG - chr2_4:52787276-52787295 None:intergenic 35.0%
CCATGGGCAAATAGAAAAAA+TGG + chr2_4:52787273-52787292 Msa0334450:intron 35.0%
ACTCTAATAGTTATGGACAG+AGG + chr2_4:52787392-52787411 Msa0334450:intron 35.0%
! AACTAGAATCGCTCGAATTT+TGG - chr2_4:52787428-52787447 None:intergenic 35.0%
TCATGCTAAGATACTACAGA+AGG - chr2_4:52787496-52787515 None:intergenic 35.0%
GATTAGATGAGTTATACGAC+AGG + chr2_4:52787629-52787648 Msa0334450:intron 35.0%
CTCTGATTCTCTCAATCAAT+GGG - chr2_4:52787750-52787769 None:intergenic 35.0%
TCTCTGATTCTCTCAATCAA+TGG - chr2_4:52787751-52787770 None:intergenic 35.0%
AGGATAAATTGAATGTCGAG+CGG + chr2_4:52787802-52787821 Msa0334450:intron 35.0%
CACGAAGGCCTAAATTAATA+AGG - chr2_4:52787890-52787909 None:intergenic 35.0%
CCTTCGTGTTATAGAAGTAA+GGG + chr2_4:52787902-52787921 Msa0334450:intron 35.0%
TGCTCTTGCTAATGAATTTG+AGG - chr2_4:52788177-52788196 None:intergenic 35.0%
TACGAATATGTGAATTGCAC+AGG + chr2_4:52788424-52788443 Msa0334450:intron 35.0%
TCCATGATTTATGGGTGTAT+TGG + chr2_4:52788453-52788472 Msa0334450:intron 35.0%
TCCAATACACCCATAAATCA+TGG - chr2_4:52788457-52788476 None:intergenic 35.0%
!!! TAACCAAATTTCGGGTTTTC+GGG - chr2_4:52788647-52788666 None:intergenic 35.0%
!!! CTAACCAAATTTCGGGTTTT+CGG - chr2_4:52788648-52788667 None:intergenic 35.0%
TGGTTAGCAAAACATAAACC+GGG + chr2_4:52788661-52788680 Msa0334450:intron 35.0%
!! AGATTTGTTACCCAGAAATC+CGG - chr2_4:52788707-52788726 None:intergenic 35.0%
! ATCGCGAGTTTGTCTATTTT+GGG + chr2_4:52788869-52788888 Msa0334450:intron 35.0%
!! AGTTCTGGTTCTTGTTTCTT+CGG - chr2_4:52789191-52789210 None:intergenic 35.0%
TATTTGAATCTGTGACCTCA+AGG - chr2_4:52789335-52789354 None:intergenic 35.0%
GAGGTCACAGATTCAAATAT+TGG + chr2_4:52789336-52789355 Msa0334450:intron 35.0%
GAATCTCAGATTCTATGACA+AGG - chr2_4:52789665-52789684 None:intergenic 35.0%
TTTGCTAGCTCATCAACTAT+GGG - chr2_4:52789741-52789760 None:intergenic 35.0%
!! TTTGTGGTCAATGTTGCTTT+GGG - chr2_4:52789906-52789925 None:intergenic 35.0%
! ATTTGTGGTCAATGTTGCTT+TGG - chr2_4:52789907-52789926 None:intergenic 35.0%
GCTTTATGATATGTCGCTAA+TGG - chr2_4:52789993-52790012 None:intergenic 35.0%
TGAAATCCATTTGACATCAC+TGG + chr2_4:52790164-52790183 Msa0334450:three_prime_UTR 35.0%
AAACAAAAACATTTCGCCGC+TGG + chr2_4:52785812-52785831 Msa0334450:five_prime_UTR 40.0%
! CGGAGGAACTAATTTGTCAT+TGG - chr2_4:52786228-52786247 None:intergenic 40.0%
GTGACTTACAAAACTAACGG+AGG - chr2_4:52786245-52786264 None:intergenic 40.0%
ATAAAGCTCCCGCATAAGTA+GGG - chr2_4:52786344-52786363 None:intergenic 40.0%
AATAAAGCTCCCGCATAAGT+AGG - chr2_4:52786345-52786364 None:intergenic 40.0%
AATTCCCAGCTAAGGTGAAA+TGG + chr2_4:52786467-52786486 Msa0334450:intron 40.0%
! AGTGGTGGGATTTGATATGT+AGG - chr2_4:52786553-52786572 None:intergenic 40.0%
! AGGGGAGATTTAGTTTCAAG+GGG - chr2_4:52786581-52786600 None:intergenic 40.0%
! GAGGGGAGATTTAGTTTCAA+GGG - chr2_4:52786582-52786601 None:intergenic 40.0%
! TGAGGGGAGATTTAGTTTCA+AGG - chr2_4:52786583-52786602 None:intergenic 40.0%
AGGAATAAGGAACCCAATCT+TGG - chr2_4:52786715-52786734 None:intergenic 40.0%
TGGGTTCCTTATTCCTATCA+TGG + chr2_4:52786719-52786738 Msa0334450:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr2_4:52786826-52786845 None:intergenic 40.0%
GTTGCGTACAATACACCAAA+TGG - chr2_4:52786830-52786849 None:intergenic 40.0%
! TTACATAAGAGGCTGTTTCC+AGG + chr2_4:52786861-52786880 Msa0334450:intron 40.0%
ACATTGTTGAAGTCATGCAG+TGG - chr2_4:52786997-52787016 None:intergenic 40.0%
! TAGGTTGAGCTCCCAATATT+TGG + chr2_4:52787199-52787218 Msa0334450:intron 40.0%
TGAGCTCCCAATATTTGGTT+TGG + chr2_4:52787204-52787223 Msa0334450:intron 40.0%
! GAGCTCCCAATATTTGGTTT+GGG + chr2_4:52787205-52787224 Msa0334450:intron 40.0%
!! AGCTCCCAATATTTGGTTTG+GGG + chr2_4:52787206-52787225 Msa0334450:intron 40.0%
! CCATTCAAGAGCATGTGAAT+TGG - chr2_4:52787532-52787551 None:intergenic 40.0%
CCAATTCACATGCTCTTGAA+TGG + chr2_4:52787529-52787548 Msa0334450:intron 40.0%
CGTGGGACCATCTTTATTAA+AGG - chr2_4:52787727-52787746 None:intergenic 40.0%
GCCTTCGTGTTATAGAAGTA+AGG + chr2_4:52787901-52787920 Msa0334450:intron 40.0%
CCCTTACTTCTATAACACGA+AGG - chr2_4:52787905-52787924 None:intergenic 40.0%
CTTCTAAACTTGTACCCCAA+GGG + chr2_4:52787965-52787984 Msa0334450:intron 40.0%
ACAAACTCGAGATCCTAAGT+AGG + chr2_4:52788002-52788021 Msa0334450:intron 40.0%
ACACCAATGAGATCGTGAAT+CGG + chr2_4:52788033-52788052 Msa0334450:intron 40.0%
!! GATTTGTTACCCAGAAATCC+GGG - chr2_4:52788706-52788725 None:intergenic 40.0%
GTCGTTGAAAAACGCAGAAT+CGG - chr2_4:52788755-52788774 None:intergenic 40.0%
!! GAATCGGAAATTTGTTGTCG+CGG - chr2_4:52788786-52788805 None:intergenic 40.0%
! GATCGCGAGTTTGTCTATTT+TGG + chr2_4:52788868-52788887 Msa0334450:intron 40.0%
AGGTCACAATGGTTGAATCA+AGG - chr2_4:52789315-52789334 None:intergenic 40.0%
ATTCAACCATTGTGACCTTG+AGG + chr2_4:52789317-52789336 Msa0334450:intron 40.0%
TCTTAAGCATACAAGCAGAG+AGG - chr2_4:52789368-52789387 None:intergenic 40.0%
TTACTCAGACTGCAACTGAT+GGG + chr2_4:52789401-52789420 Msa0334450:intron 40.0%
! GTTTGCATGTTTTGCAGTTC+AGG + chr2_4:52789483-52789502 Msa0334450:intron 40.0%
! AGAATCTGAGATTCCTGTGT+TGG + chr2_4:52789671-52789690 Msa0334450:CDS 40.0%
CAACTATGGGATGAATCATG+CGG - chr2_4:52789728-52789747 None:intergenic 40.0%
CTTTGCTAGCTCATCAACTA+TGG - chr2_4:52789742-52789761 None:intergenic 40.0%
!! CATAGTTGATGAGCTAGCAA+AGG + chr2_4:52789740-52789759 Msa0334450:CDS 40.0%
TGAGCTAGCAAAGGAATATG+CGG + chr2_4:52789749-52789768 Msa0334450:CDS 40.0%
AAAGTCCTTCAGTTGCTACT+CGG + chr2_4:52789805-52789824 Msa0334450:CDS 40.0%
TATGGGATGCTTCCATATTG+TGG + chr2_4:52790078-52790097 Msa0334450:three_prime_UTR 40.0%
ATTGCAGAGAATCGTAGCTC+TGG - chr2_4:52785885-52785904 None:intergenic 45.0%
GCTACGATTCTCTGCAATCA+TGG + chr2_4:52785887-52785906 Msa0334450:exon 45.0%
!! GGAGAAGGATTCGAGTTGTA+CGG - chr2_4:52785916-52785935 None:intergenic 45.0%
GACGATTGGAGAGCGAATAA+GGG - chr2_4:52785937-52785956 None:intergenic 45.0%
TAACACAGCCGTTGAAGGTT+AGG + chr2_4:52786094-52786113 Msa0334450:intron 45.0%
AACACAGCCGTTGAAGGTTA+GGG + chr2_4:52786095-52786114 Msa0334450:intron 45.0%
AACCGAACCCTAACCTTCAA+CGG - chr2_4:52786105-52786124 None:intergenic 45.0%
TACGTATTGGAACCCCTTTC+CGG + chr2_4:52786317-52786336 Msa0334450:intron 45.0%
AATACACTAAAAGGGCAGCC+CGG - chr2_4:52786371-52786390 None:intergenic 45.0%
GGTGGGATTTGATATGTAGG+TGG - chr2_4:52786550-52786569 None:intergenic 45.0%
TAGTTTCAAGGGGGAGAAAG+TGG - chr2_4:52786571-52786590 None:intergenic 45.0%
! GGGGAGATTTAGTTTCAAGG+GGG - chr2_4:52786580-52786599 None:intergenic 45.0%
TCCTAGGAGGGCAATAGAAA+GGG - chr2_4:52786608-52786627 None:intergenic 45.0%
ATCCTAGGAGGGCAATAGAA+AGG - chr2_4:52786609-52786628 None:intergenic 45.0%
ACTCTAGTCTCATCCTAGGA+GGG - chr2_4:52786620-52786639 None:intergenic 45.0%
TACTCTAGTCTCATCCTAGG+AGG - chr2_4:52786621-52786640 None:intergenic 45.0%
TGCTACTCTAGTCTCATCCT+AGG - chr2_4:52786624-52786643 None:intergenic 45.0%
TAGGATGAGACTAGAGTAGC+AGG + chr2_4:52786623-52786642 Msa0334450:intron 45.0%
AGGATGAGACTAGAGTAGCA+GGG + chr2_4:52786624-52786643 Msa0334450:intron 45.0%
CCTCGACACCTATAATTGAG+AGG - chr2_4:52786687-52786706 None:intergenic 45.0%
! CCTCTCAATTATAGGTGTCG+AGG + chr2_4:52786684-52786703 Msa0334450:intron 45.0%
TGTCGAGGAAACACCAAGAT+TGG + chr2_4:52786699-52786718 Msa0334450:intron 45.0%
GTCGAGGAAACACCAAGATT+GGG + chr2_4:52786700-52786719 Msa0334450:intron 45.0%
GAGGCTCCATGATAGGAATA+AGG - chr2_4:52786728-52786747 None:intergenic 45.0%
ATTCCTATCATGGAGCCTCA+TGG + chr2_4:52786729-52786748 Msa0334450:intron 45.0%
AGTGCAATGTAGACTCCATG+AGG - chr2_4:52786747-52786766 None:intergenic 45.0%
TTGCACTAAAAAGGGCAACC+CGG + chr2_4:52786760-52786779 Msa0334450:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr2_4:52786827-52786846 None:intergenic 45.0%
GTGGGTACAAATTCACCTGA+CGG - chr2_4:52786951-52786970 None:intergenic 45.0%
GCGTAAGTTGCCAGTTTGTA+TGG - chr2_4:52787033-52787052 None:intergenic 45.0%
! CTTGGTGACACTGACCAAAA+TGG - chr2_4:52787133-52787152 None:intergenic 45.0%
AGTGTCACCAAGACACTTCT+GGG + chr2_4:52787141-52787160 Msa0334450:intron 45.0%
! CTGGGTGGGTTCACAATATT+TGG + chr2_4:52787159-52787178 Msa0334450:intron 45.0%
GTTATGGACAGAGGCTTTCT+TGG + chr2_4:52787401-52787420 Msa0334450:intron 45.0%
GATACTACAGAAGGCTGCAA+AGG - chr2_4:52787487-52787506 None:intergenic 45.0%
TTCTCTCAATCAATGGGCGT+GGG - chr2_4:52787744-52787763 None:intergenic 45.0%
ATTCTCTCAATCAATGGGCG+TGG - chr2_4:52787745-52787764 None:intergenic 45.0%
GGTCCAATACCATCTTCAGA+GGG + chr2_4:52787823-52787842 Msa0334450:intron 45.0%
GTCCAATACCATCTTCAGAG+GGG + chr2_4:52787824-52787843 Msa0334450:intron 45.0%
GCTTCTAAACTTGTACCCCA+AGG + chr2_4:52787964-52787983 Msa0334450:intron 45.0%
CTCGAGATCCTAAGTAGGAT+CGG + chr2_4:52788007-52788026 Msa0334450:intron 45.0%
! GGTGTTATCCGATCCTACTT+AGG - chr2_4:52788018-52788037 None:intergenic 45.0%
CACCAATGAGATCGTGAATC+GGG + chr2_4:52788034-52788053 Msa0334450:intron 45.0%
ACCAATGAGATCGTGAATCG+GGG + chr2_4:52788035-52788054 Msa0334450:intron 45.0%
! CTGCAGAACTAATGGGTAGA+AGG + chr2_4:52788363-52788382 Msa0334450:intron 45.0%
!!! AAATTTCGGGTTTTCGGGTC+GGG - chr2_4:52788642-52788661 None:intergenic 45.0%
!!! CAAATTTCGGGTTTTCGGGT+CGG - chr2_4:52788643-52788662 None:intergenic 45.0%
GGGTAACAAATCTGAATCGC+TGG + chr2_4:52788714-52788733 Msa0334450:intron 45.0%
AGCATTCAGGATTGATGTGC+TGG + chr2_4:52789008-52789027 Msa0334450:intron 45.0%
ATTCAGGATTGATGTGCTGG+TGG + chr2_4:52789011-52789030 Msa0334450:intron 45.0%
! TGGTTCTTGTTTCTTCGGCT+GGG - chr2_4:52789186-52789205 None:intergenic 45.0%
CTTACTCAGACTGCAACTGA+TGG + chr2_4:52789400-52789419 Msa0334450:intron 45.0%
GCAGTGGCTTCTATTACTGA+TGG + chr2_4:52789627-52789646 Msa0334450:intron 45.0%
! TTCCTGTGTTGGTCGAATTC+TGG + chr2_4:52789682-52789701 Msa0334450:CDS 45.0%
! TCCTGTGTTGGTCGAATTCT+GGG + chr2_4:52789683-52789702 Msa0334450:CDS 45.0%
GAGCTAGCAAAGGAATATGC+GGG + chr2_4:52789750-52789769 Msa0334450:CDS 45.0%
CTTCAGTTGCTACTCGGTAT+GGG + chr2_4:52789811-52789830 Msa0334450:CDS 45.0%
TTCTTTGTCTGCCATCTCAC+AGG - chr2_4:52789941-52789960 None:intergenic 45.0%
TGTGAGATGGCAGACAAAGA+AGG + chr2_4:52789940-52789959 Msa0334450:exon 45.0%
!! AATTTCAATAAATATTTATT+TGG - chr2_4:52787107-52787126 None:intergenic 5.0%
!! GAAGGATTCGAGTTGTACGG+TGG - chr2_4:52785913-52785932 None:intergenic 50.0%
TGGAGAGCGAATAAGGGAGA+AGG - chr2_4:52785931-52785950 None:intergenic 50.0%
CGACGATTGGAGAGCGAATA+AGG - chr2_4:52785938-52785957 None:intergenic 50.0%
CGTGATAACACAGCCGTTGA+AGG + chr2_4:52786089-52786108 Msa0334450:CDS 50.0%
AGCCGTTGAAGGTTAGGGTT+CGG + chr2_4:52786100-52786119 Msa0334450:intron 50.0%
CATAAGTAGGGTCCGGAAAG+GGG - chr2_4:52786332-52786351 None:intergenic 50.0%
GCATAAGTAGGGTCCGGAAA+GGG - chr2_4:52786333-52786352 None:intergenic 50.0%
CTTTCCGGACCCTACTTATG+CGG + chr2_4:52786332-52786351 Msa0334450:intron 50.0%
TTTCCGGACCCTACTTATGC+GGG + chr2_4:52786333-52786352 Msa0334450:intron 50.0%
!! ATGCGGGAGCTTTATTGCAC+CGG + chr2_4:52786349-52786368 Msa0334450:intron 50.0%
TGGGCCATTTCACCTTAGCT+GGG - chr2_4:52786474-52786493 None:intergenic 50.0%
GTGTTTCGGATTATGGGCCT+GGG - chr2_4:52786493-52786512 None:intergenic 50.0%
TGTGTTTCGGATTATGGGCC+TGG - chr2_4:52786494-52786513 None:intergenic 50.0%
TTCAAGGGGGAGAAAGTGGT+GGG - chr2_4:52786567-52786586 None:intergenic 50.0%
TTTCAAGGGGGAGAAAGTGG+TGG - chr2_4:52786568-52786587 None:intergenic 50.0%
CTAGGAGGGCAATAGAAAGG+GGG - chr2_4:52786606-52786625 None:intergenic 50.0%
CCTAGGAGGGCAATAGAAAG+GGG - chr2_4:52786607-52786626 None:intergenic 50.0%
ACTCCATGAGGCTCCATGAT+AGG - chr2_4:52786735-52786754 None:intergenic 50.0%
! CATAAGAGGCTGTTTCCAGG+AGG + chr2_4:52786864-52786883 Msa0334450:intron 50.0%
AGTGCAATGTAGACTCCTCC+TGG - chr2_4:52786882-52786901 None:intergenic 50.0%
! CAACACCTCGTGAAAGGCAT+TGG - chr2_4:52786925-52786944 None:intergenic 50.0%
CAGTGTCACCAAGACACTTC+TGG + chr2_4:52787140-52787159 Msa0334450:intron 50.0%
TCACCAAGACACTTCTGGGT+GGG + chr2_4:52787145-52787164 Msa0334450:intron 50.0%
CGGTCCAATACCATCTTCAG+AGG + chr2_4:52787822-52787841 Msa0334450:intron 50.0%
! CTCCCCTCTGAAGATGGTAT+TGG - chr2_4:52787829-52787848 None:intergenic 50.0%
TCTACCTTGCTTGTGCCCTT+GGG - chr2_4:52787983-52788002 None:intergenic 50.0%
CCAATGAGATCGTGAATCGG+GGG + chr2_4:52788036-52788055 Msa0334450:intron 50.0%
TGAATCGGGGGATCGTAACA+CGG + chr2_4:52788048-52788067 Msa0334450:intron 50.0%
CGACCCGAAAACCCGAAATT+TGG + chr2_4:52788641-52788660 Msa0334450:intron 50.0%
!! GGAAATTTGTTGTCGCGGCT+TGG - chr2_4:52788781-52788800 None:intergenic 50.0%
TTCCGATTCCGACGACTTTC+CGG + chr2_4:52788797-52788816 Msa0334450:intron 50.0%
GGGAGGTGAGATCACAAACT+CGG + chr2_4:52788829-52788848 Msa0334450:intron 50.0%
AAACTCGCGATCCAACTCGT+AGG - chr2_4:52788860-52788879 None:intergenic 50.0%
! CTGGTTCTTGTTTCTTCGGC+TGG - chr2_4:52789187-52789206 None:intergenic 50.0%
CTGTGACCTCAAGGTCACAA+TGG - chr2_4:52789326-52789345 None:intergenic 50.0%
ATGGGATGAATCATGCGGCA+GGG - chr2_4:52789723-52789742 None:intergenic 50.0%
TATGGGATGAATCATGCGGC+AGG - chr2_4:52789724-52789743 None:intergenic 50.0%
CCATACCGAGTAGCAACTGA+AGG - chr2_4:52789813-52789832 None:intergenic 50.0%
CCTTCAGTTGCTACTCGGTA+TGG + chr2_4:52789810-52789829 Msa0334450:CDS 50.0%
CAGACAAAGAAGGCTTCAGC+TGG + chr2_4:52789950-52789969 Msa0334450:three_prime_UTR 50.0%
GCCGCGTTTCCTCAATACAC+CGG + chr2_4:52785975-52785994 Msa0334450:CDS 55.0%
GCCGGTGTATTGAGGAAACG+CGG - chr2_4:52785979-52785998 None:intergenic 55.0%
AGCTTGAGGCCGGTGTATTG+AGG - chr2_4:52785987-52786006 None:intergenic 55.0%
CGACGAACAACATTCGAGGC+GGG - chr2_4:52786044-52786063 None:intergenic 55.0%
GCGACGAACAACATTCGAGG+CGG - chr2_4:52786045-52786064 None:intergenic 55.0%
GCCTCGAATGTTGTTCGTCG+CGG + chr2_4:52786044-52786063 Msa0334450:CDS 55.0%
ACCGCGACGAACAACATTCG+AGG - chr2_4:52786048-52786067 None:intergenic 55.0%
TCGAATGTTGTTCGTCGCGG+TGG + chr2_4:52786047-52786066 Msa0334450:CDS 55.0%
ATCACGAGCCTCACACACGA+CGG - chr2_4:52786075-52786094 None:intergenic 55.0%
CGCATAAGTAGGGTCCGGAA+AGG - chr2_4:52786334-52786353 None:intergenic 55.0%
!! TGCGGGAGCTTTATTGCACC+GGG + chr2_4:52786350-52786369 Msa0334450:intron 55.0%
CTGACGGGAATTCCCAGCTA+AGG + chr2_4:52786459-52786478 Msa0334450:intron 55.0%
CTGGGCCATTTCACCTTAGC+TGG - chr2_4:52786475-52786494 None:intergenic 55.0%
CAGCTAAGGTGAAATGGCCC+AGG + chr2_4:52786473-52786492 Msa0334450:intron 55.0%
GGCAATAGAAAGGGGGTGAG+GGG - chr2_4:52786599-52786618 None:intergenic 55.0%
GGGCAATAGAAAGGGGGTGA+GGG - chr2_4:52786600-52786619 None:intergenic 55.0%
AGGGCAATAGAAAGGGGGTG+AGG - chr2_4:52786601-52786620 None:intergenic 55.0%
CCCCTTTCTATTGCCCTCCT+AGG + chr2_4:52786604-52786623 Msa0334450:intron 55.0%
GAGACTAGAGTAGCAGGGCA+CGG + chr2_4:52786629-52786648 Msa0334450:intron 55.0%
AGACTAGAGTAGCAGGGCAC+GGG + chr2_4:52786630-52786649 Msa0334450:intron 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr2_4:52786786-52786805 Msa0334450:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr2_4:52786787-52786806 Msa0334450:intron 55.0%
GTGGACCAATGCCTTTCACG+AGG + chr2_4:52786917-52786936 Msa0334450:intron 55.0%
CGGTGACAACACCTCGTGAA+AGG - chr2_4:52786931-52786950 None:intergenic 55.0%
AAGTCATGCAGTGGCCACGT+GGG - chr2_4:52786988-52787007 None:intergenic 55.0%
GTCACCAAGACACTTCTGGG+TGG + chr2_4:52787144-52787163 Msa0334450:intron 55.0%
!! GAACCCACCCAGAAGTGTCT+TGG - chr2_4:52787151-52787170 None:intergenic 55.0%
! AAGGAGCTCCCCTCTGAAGA+TGG - chr2_4:52787835-52787854 None:intergenic 55.0%
AGGGGAGCTCCTTGTCTTCT+CGG + chr2_4:52787842-52787861 Msa0334450:intron 55.0%
AGCTCCTTGTCTTCTCGGGA+AGG + chr2_4:52787847-52787866 Msa0334450:intron 55.0%
GCTCCTTGTCTTCTCGGGAA+GGG + chr2_4:52787848-52787867 Msa0334450:intron 55.0%
CTACCCTTCCCGAGAAGACA+AGG - chr2_4:52787854-52787873 None:intergenic 55.0%
CTACCTTGCTTGTGCCCTTG+GGG - chr2_4:52787982-52788001 None:intergenic 55.0%
GTCTACCTTGCTTGTGCCCT+TGG - chr2_4:52787984-52788003 None:intergenic 55.0%
CCCCCGATTCACGATCTCAT+TGG - chr2_4:52788039-52788058 None:intergenic 55.0%
TACCCAGAAATCCGGGTTCG+CGG - chr2_4:52788699-52788718 None:intergenic 55.0%
TGCCGGAAAGTCGTCGGAAT+CGG - chr2_4:52788802-52788821 None:intergenic 55.0%
ATTCCGACGACTTTCCGGCA+CGG + chr2_4:52788802-52788821 Msa0334450:intron 55.0%
ACTCGGACGATCCTACGAGT+TGG + chr2_4:52788846-52788865 Msa0334450:intron 55.0%
GACTGCAACTGATGGGAGCT+TGG + chr2_4:52789408-52789427 Msa0334450:intron 55.0%
GCCCAGAATTCGACCAACAC+AGG - chr2_4:52789687-52789706 None:intergenic 55.0%
TGGTCGAATTCTGGGCTCCA+TGG + chr2_4:52789691-52789710 Msa0334450:CDS 55.0%
GAATTCTGGGCTCCATGGTG+TGG + chr2_4:52789696-52789715 Msa0334450:CDS 55.0%
GACCGAGTGAGAGAGACCAG+CGG - chr2_4:52785831-52785850 None:intergenic 60.0%
CTCCAATCGTCGCTTCTCGC+CGG + chr2_4:52785946-52785965 Msa0334450:CDS 60.0%
TTGACTCCGCAGACGAGTGG+CGG - chr2_4:52786021-52786040 None:intergenic 60.0%
GCTCCCGCATAAGTAGGGTC+CGG - chr2_4:52786339-52786358 None:intergenic 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr2_4:52786782-52786801 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr2_4:52786798-52786817 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr2_4:52786799-52786818 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr2_4:52786798-52786817 Msa0334450:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr2_4:52786799-52786818 Msa0334450:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr2_4:52786814-52786833 None:intergenic 60.0%
!! CACGAGGTGTTGTCACCGTC+AGG + chr2_4:52786933-52786952 Msa0334450:intron 60.0%
GAAGTCATGCAGTGGCCACG+TGG - chr2_4:52786989-52787008 None:intergenic 60.0%
GGGGAGCTCCTTGTCTTCTC+GGG + chr2_4:52787843-52787862 Msa0334450:intron 60.0%
! GTACCCCAAGGGCACAAGCA+AGG + chr2_4:52787976-52787995 Msa0334450:intron 60.0%
AGAAATCCGGGTTCGCGGGT+CGG - chr2_4:52788694-52788713 None:intergenic 60.0%
ACCCGCGAACCCGGATTTCT+GGG + chr2_4:52788694-52788713 Msa0334450:intron 60.0%
ACCCAGAAATCCGGGTTCGC+GGG - chr2_4:52788698-52788717 None:intergenic 60.0%
TTGCCGTGCCGGAAAGTCGT+CGG - chr2_4:52788808-52788827 None:intergenic 60.0%
ACGACTTTCCGGCACGGCAA+GGG + chr2_4:52788808-52788827 Msa0334450:intron 60.0%
! CGCCGCTGGTCTCTCTCACT+CGG + chr2_4:52785826-52785845 Msa0334450:five_prime_UTR 65.0%
CTCCGGCGAGAAGCGACGAT+TGG - chr2_4:52785951-52785970 None:intergenic 65.0%
GAGGAAACGCGGCAGTGCTC+CGG - chr2_4:52785968-52785987 None:intergenic 65.0%
! GACTGGTCGGAGCTTGAGGC+CGG - chr2_4:52785997-52786016 None:intergenic 65.0%
! CGGAGACTGGTCGGAGCTTG+AGG - chr2_4:52786001-52786020 None:intergenic 65.0%
! GACGAGTGGCGGAGACTGGT+CGG - chr2_4:52786010-52786029 None:intergenic 65.0%
CAGTCTCCGCCACTCGTCTG+CGG + chr2_4:52786012-52786031 Msa0334450:CDS 65.0%
! GGGTTGACTCCGCAGACGAG+TGG - chr2_4:52786024-52786043 None:intergenic 65.0%
CGGTGGAACCGTCGTGTGTG+AGG + chr2_4:52786064-52786083 Msa0334450:CDS 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr2_4:52786781-52786800 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr2_4:52786792-52786811 Msa0334450:intron 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr2_4:52786793-52786812 Msa0334450:intron 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr2_4:52786797-52786816 Msa0334450:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr2_4:52786812-52786831 Msa0334450:intron 65.0%
TTCGGGTCGGGTTCGTGACC+CGG - chr2_4:52788630-52788649 None:intergenic 65.0%
GACCCGCGAACCCGGATTTC+TGG + chr2_4:52788693-52788712 Msa0334450:intron 65.0%
GACGACTTTCCGGCACGGCA+AGG + chr2_4:52788807-52788826 Msa0334450:intron 65.0%
CGACTTTCCGGCACGGCAAG+GGG + chr2_4:52788809-52788828 Msa0334450:intron 65.0%
ATGCGGCAGGGACCACACCA+TGG - chr2_4:52789711-52789730 None:intergenic 65.0%
! CGCAGACGAGTGGCGGAGAC+TGG - chr2_4:52786014-52786033 None:intergenic 70.0%
!! TCGCGGGTCGGTTCGTGACC+CGG - chr2_4:52788682-52788701 None:intergenic 70.0%
CACGAACCGACCCGCGAACC+CGG + chr2_4:52788685-52788704 Msa0334450:intron 70.0%
CTTTCCGGCACGGCAAGGGG+AGG + chr2_4:52788812-52788831 Msa0334450:intron 70.0%
CTCACCTCCCCTTGCCGTGC+CGG - chr2_4:52788819-52788838 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 52785723 52790187 52785723 ID=Msa0334450;Name=Msa0334450
chr2_4 mRNA 52785723 52790187 52785723 ID=Msa0334450-mRNA-1;Parent=Msa0334450;Name=Msa0334450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|1|1|2|243|172
chr2_4 exon 52785723 52786110 52785723 ID=Msa0334450-mRNA-1:exon:15949;Parent=Msa0334450-mRNA-1
chr2_4 exon 52789631 52790187 52789631 ID=Msa0334450-mRNA-1:exon:15950;Parent=Msa0334450-mRNA-1
chr2_4 five_prime_UTR 52785723 52785905 52785723 ID=Msa0334450-mRNA-1:five_prime_utr;Parent=Msa0334450-mRNA-1
chr2_4 CDS 52785906 52786110 52785906 ID=Msa0334450-mRNA-1:cds;Parent=Msa0334450-mRNA-1
chr2_4 CDS 52789631 52789944 52789631 ID=Msa0334450-mRNA-1:cds;Parent=Msa0334450-mRNA-1
chr2_4 three_prime_UTR 52789945 52790187 52789945 ID=Msa0334450-mRNA-1:three_prime_utr;Parent=Msa0334450-mRNA-1
Gene Sequence

>Msa0334450

ATGGCCACCGTACAACTCGAATCCTTCTCCCTTATTCGCTCTCCAATCGTCGCTTCTCGCCGGAGCACTGCCGCGTTTCCTCAATACACCGGCCTCAAGCTCCGACCAGTCTCCGCCACTCGTCTGCGGAGTCAACCCGCCTCGAATGTTGTTCGTCGCGGTGGAACCGTCGTGTGTGAGGCTCGTGATAACACAGCCGTTGAAGTGGCTTCTATTACTGATGGAAATTGGCAATCCCTTGTCATAGAATCTGAGATTCCTGTGTTGGTCGAATTCTGGGCTCCATGGTGTGGTCCCTGCCGCATGATTCATCCCATAGTTGATGAGCTAGCAAAGGAATATGCGGGTAAGCTCAAGTGTTACAAACTCAATACTGATGAAAGTCCTTCAGTTGCTACTCGGTATGGGATTCGAAGTATTCCAACTGTCATTTTCTTCAAGAACGGTGAAAAGAAAGATACAGTTATTGGTGCTGTGCCCAAAGCAACATTGACCACAAATATAGAAAAATTCCTGTGA

Protein sequence

>Msa0334450

MATVQLESFSLIRSPIVASRRSTAAFPQYTGLKLRPVSATRLRSQPASNVVRRGGTVVCEARDNTAVEVASITDGNWQSLVIESEIPVLVEFWAPWCGPCRMIHPIVDELAKEYAGKLKCYKLNTDESPSVATRYGIRSIPTVIFFKNGEKKDTVIGAVPKATLTTNIEKFL*