Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508330 | XP_003600792.2 | 92.023 | 514 | 11 | 3 | 1 | 485 | 1 | 513 | 0.0 | 967 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508330 | sp|Q0WSN2|DAR2_ARATH | 60.271 | 516 | 159 | 7 | 8 | 485 | 21 | 528 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508330 | G7JA19 | 92.023 | 514 | 11 | 3 | 1 | 485 | 1 | 513 | 0.0 | 967 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0508330 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0508330 | 0.808355 | 3.225446e-50 | -8.615850e-47 |
| Msa0064440 | Msa0508330 | 0.814143 | 1.790242e-51 | -8.615850e-47 |
| Msa0090350 | Msa0508330 | 0.803017 | 4.260251e-49 | -8.615850e-47 |
| Msa0160650 | Msa0508330 | 0.805433 | 1.337817e-49 | -8.615850e-47 |
| Msa0368790 | Msa0508330 | 0.872144 | 3.985822e-67 | -8.615850e-47 |
| Msa0416090 | Msa0508330 | 0.846934 | 1.589304e-59 | -8.615850e-47 |
| Msa0431940 | Msa0508330 | 0.803028 | 4.237324e-49 | -8.615850e-47 |
| Msa0462740 | Msa0508330 | 0.880669 | 4.537455e-70 | -8.615850e-47 |
| Msa0508330 | Msa0623360 | 0.806931 | 6.472464e-50 | -8.615850e-47 |
| Msa0508330 | Msa0648200 | 0.800422 | 1.452176e-48 | -8.615850e-47 |
| Msa0508330 | Msa0664110 | 0.813323 | 2.712517e-51 | -8.615850e-47 |
| Msa0508330 | Msa0664130 | 0.805551 | 1.263879e-49 | -8.615850e-47 |
| Msa0508330 | Msa0691140 | 0.816566 | 5.177440e-52 | -8.615850e-47 |
| Msa0508330 | Msa1089130 | 0.800935 | 1.141215e-48 | -8.615850e-47 |
| Msa0508330 | Msa1204390 | 0.850534 | 1.595888e-60 | -8.615850e-47 |
| Msa0508330 | Msa1263610 | 0.804169 | 2.457640e-49 | -8.615850e-47 |
| Msa0508330 | Msa1307110 | 0.803157 | 3.985856e-49 | -8.615850e-47 |
| Msa0508330 | Msa1329020 | 0.853870 | 1.794947e-61 | -8.615850e-47 |
| Msa0508330 | Msa1346920 | 0.851611 | 7.929839e-61 | -8.615850e-47 |
| Msa0508330 | Msa1368660 | 0.810552 | 1.088861e-50 | -8.615850e-47 |
| Msa0508330 | Msa1433380 | 0.803006 | 4.283300e-49 | -8.615850e-47 |
| Msa0508330 | Msa1446220 | 0.821097 | 4.839903e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508330 | MtrunA17_Chr3g0112601 | 92.023 | 514 | 11 | 3 | 1 | 485 | 1 | 513 | 0.0 | 967 |
| Msa0508330 | MtrunA17_Chr5g0436051 | 68.605 | 516 | 119 | 5 | 1 | 485 | 113 | 616 | 0.0 | 684 |
| Msa0508330 | MtrunA17_Chr8g0373781 | 53.468 | 447 | 170 | 6 | 71 | 484 | 90 | 531 | 6.13e-143 | 420 |
| Msa0508330 | MtrunA17_Chr1g0154501 | 47.251 | 491 | 198 | 11 | 32 | 484 | 1 | 468 | 8.39e-141 | 412 |
| Msa0508330 | MtrunA17_Chr5g0403301 | 57.807 | 301 | 105 | 2 | 185 | 484 | 27 | 306 | 2.45e-113 | 337 |
| Msa0508330 | MtrunA17_Chr5g0403271 | 66.883 | 154 | 50 | 1 | 331 | 484 | 1 | 153 | 6.47e-59 | 191 |
| Msa0508330 | MtrunA17_Chr5g0403261 | 36.290 | 372 | 123 | 10 | 32 | 295 | 1 | 366 | 3.38e-58 | 196 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508330 | AT2G39830.1 | 60.271 | 516 | 159 | 7 | 8 | 485 | 21 | 528 | 0.0 | 584 |
| Msa0508330 | AT2G39830.2 | 59.923 | 519 | 159 | 8 | 8 | 485 | 21 | 531 | 0.0 | 578 |
| Msa0508330 | AT2G39830.3 | 59.496 | 516 | 154 | 8 | 8 | 485 | 21 | 519 | 0.0 | 568 |
| Msa0508330 | AT2G39830.4 | 57.673 | 404 | 130 | 5 | 8 | 375 | 21 | 419 | 1.15e-155 | 450 |
| Msa0508330 | AT1G19270.1 | 44.815 | 540 | 204 | 7 | 32 | 485 | 1 | 532 | 5.70e-147 | 431 |
| Msa0508330 | AT1G19270.2 | 44.815 | 540 | 204 | 7 | 32 | 485 | 1 | 532 | 5.70e-147 | 431 |
| Msa0508330 | AT4G36860.1 | 53.725 | 443 | 152 | 6 | 74 | 484 | 132 | 553 | 5.43e-146 | 429 |
| Msa0508330 | AT4G36860.3 | 53.725 | 443 | 152 | 6 | 74 | 484 | 156 | 577 | 8.28e-146 | 429 |
| Msa0508330 | AT4G36860.2 | 50.898 | 334 | 115 | 5 | 74 | 375 | 132 | 448 | 1.35e-104 | 320 |
| Msa0508330 | AT5G66620.3 | 38.889 | 504 | 252 | 10 | 8 | 477 | 150 | 631 | 5.64e-104 | 324 |
| Msa0508330 | AT5G66620.4 | 38.889 | 504 | 252 | 10 | 8 | 477 | 150 | 631 | 5.64e-104 | 324 |
| Msa0508330 | AT5G66620.1 | 38.889 | 504 | 252 | 10 | 8 | 477 | 159 | 640 | 6.61e-104 | 324 |
| Msa0508330 | AT5G66610.3 | 42.180 | 422 | 208 | 7 | 80 | 478 | 16 | 424 | 1.05e-97 | 301 |
| Msa0508330 | AT5G66610.1 | 42.180 | 422 | 208 | 7 | 80 | 478 | 143 | 551 | 1.39e-96 | 302 |
| Msa0508330 | AT5G66630.1 | 43.539 | 356 | 175 | 5 | 145 | 477 | 346 | 698 | 2.76e-91 | 293 |
| Msa0508330 | AT5G66610.2 | 39.644 | 449 | 208 | 8 | 80 | 478 | 143 | 578 | 1.04e-90 | 288 |
| Msa0508330 | AT5G66640.3 | 44.753 | 324 | 165 | 5 | 166 | 477 | 10 | 331 | 2.80e-86 | 269 |
| Msa0508330 | AT5G66640.1 | 44.753 | 324 | 165 | 5 | 166 | 477 | 117 | 438 | 5.28e-85 | 269 |
| Msa0508330 | AT5G66640.7 | 44.753 | 324 | 165 | 5 | 166 | 477 | 117 | 438 | 5.28e-85 | 269 |
| Msa0508330 | AT5G66640.5 | 37.668 | 446 | 234 | 10 | 71 | 477 | 30 | 470 | 7.76e-85 | 270 |
| Msa0508330 | AT5G66640.4 | 44.753 | 324 | 165 | 5 | 166 | 477 | 148 | 469 | 1.54e-84 | 269 |
| Msa0508330 | AT5G17890.1 | 39.762 | 420 | 195 | 8 | 104 | 484 | 1208 | 1608 | 1.96e-83 | 282 |
| Msa0508330 | AT5G66640.6 | 34.305 | 446 | 245 | 11 | 71 | 477 | 30 | 466 | 4.73e-69 | 228 |
| Msa0508330 | AT5G66640.2 | 40.123 | 324 | 176 | 6 | 166 | 477 | 148 | 465 | 1.17e-68 | 227 |
| Msa0508330 | AT5G66620.2 | 32.970 | 367 | 191 | 9 | 8 | 341 | 150 | 494 | 5.61e-55 | 192 |
Find 131 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATAAATATAACCTTTA+AGG | 0.090270 | 3_4:-56260017 | None:intergenic |
| AGGCATAACCCTCTTGTTTC+TGG | 0.157651 | 3_4:-56259419 | None:intergenic |
| CTTTCACACCCTTGCATATA+TGG | 0.193810 | 3_4:+56256535 | Msa0508330:CDS |
| ATTGGAGGTCATCGATTAAT+AGG | 0.218874 | 3_4:+56259582 | Msa0508330:CDS |
| CATGGATGGTTACGCCTTAA+AGG | 0.237971 | 3_4:+56260003 | Msa0508330:CDS |
| CAGCTTATGGCGGAGGCTTT+AGG | 0.247557 | 3_4:+56260353 | Msa0508330:CDS |
| ATCCAAAGTTGAGAATAAAT+TGG | 0.266485 | 3_4:+56260291 | Msa0508330:CDS |
| CTGTATCCGCGGGGATAAAA+AGG | 0.275435 | 3_4:-56257691 | None:intergenic |
| ACGGCTATTCTTGTTCTCTA+TGG | 0.281959 | 3_4:+56259648 | Msa0508330:CDS |
| CTTCTCTGAGAAGTTTGAAT+TGG | 0.283034 | 3_4:+56260466 | Msa0508330:three_prime_UTR |
| AATACCTCACGCTCAGTAAT+AGG | 0.302681 | 3_4:-56258177 | None:intergenic |
| CACTTGCAGATACCTATAAA+TGG | 0.315905 | 3_4:+56258871 | Msa0508330:intron |
| CAGATACCTATAAATGGTTC+TGG | 0.327287 | 3_4:+56258877 | Msa0508330:intron |
| AATGATTCTTCTCCAGCTTA+TGG | 0.331932 | 3_4:+56260340 | Msa0508330:CDS |
| GATACTCTATGGTAATTGTT+TGG | 0.341032 | 3_4:+56258098 | Msa0508330:CDS |
| ACCGCCACCCCTTCCTCTAT+TGG | 0.349455 | 3_4:-56257026 | None:intergenic |
| ACCCAATTTATTCTCAACTT+TGG | 0.354011 | 3_4:-56260293 | None:intergenic |
| ATCAAACCAGAACCATTTAT+AGG | 0.366116 | 3_4:-56258883 | None:intergenic |
| ACTGACCAGTCAAACGAATA+TGG | 0.374788 | 3_4:-56260423 | None:intergenic |
| TTTCTCGTTAAGGATATAGA+TGG | 0.392201 | 3_4:+56257587 | Msa0508330:intron |
| TTCAAAATTGGATCCAATAG+AGG | 0.394023 | 3_4:+56257013 | Msa0508330:CDS |
| AATGCAGCTGTTAATAAATA+CGG | 0.395213 | 3_4:+56260382 | Msa0508330:CDS |
| GAGAAGAATCATTGGCAATC+TGG | 0.404259 | 3_4:-56260330 | None:intergenic |
| GTTCTGTTTACCAAGGATCT+AGG | 0.408729 | 3_4:-56257097 | None:intergenic |
| TCCTCCTGCAATTTCATGCT+CGG | 0.411253 | 3_4:+56260520 | Msa0508330:three_prime_UTR |
| AGTATAGGTGTCACCCCTAT+TGG | 0.411574 | 3_4:+56258908 | Msa0508330:CDS |
| TTGTAGCTGTGAAAGATTAG+AGG | 0.414076 | 3_4:+56258978 | Msa0508330:CDS |
| TCATACTCAGAGAGGAAGTC+TGG | 0.418210 | 3_4:+56256965 | Msa0508330:CDS |
| CCCTCCGAGCATGAAATTGC+AGG | 0.420712 | 3_4:-56260524 | None:intergenic |
| GCAAGAGAAAATGAAAATGA+TGG | 0.426655 | 3_4:-56256436 | None:intergenic |
| ATAGGCTTCCATCGTCGTTA+TGG | 0.428862 | 3_4:+56256486 | Msa0508330:exon |
| GGGAGAAAGATACTTTAGAT+TGG | 0.438138 | 3_4:+56259114 | Msa0508330:CDS |
| CTAAAGCCTCCGCCATAAGC+TGG | 0.441176 | 3_4:-56260352 | None:intergenic |
| TCCAAAGTTGAGAATAAATT+GGG | 0.442486 | 3_4:+56260292 | Msa0508330:CDS |
| ACTGATGATGATTATGCAAA+AGG | 0.448006 | 3_4:+56257619 | Msa0508330:CDS |
| CTCGACCATATTCGTTTGAC+TGG | 0.450760 | 3_4:+56260418 | Msa0508330:CDS |
| GTTCTGGTTTGATTGAGTAT+AGG | 0.459803 | 3_4:+56258893 | Msa0508330:CDS |
| CAAGAGAAAATGAAAATGAT+GGG | 0.461185 | 3_4:-56256435 | None:intergenic |
| TTGGAGGTCATCGATTAATA+GGG | 0.465099 | 3_4:+56259583 | Msa0508330:CDS |
| TGCAACAAGGAGATACTCTA+TGG | 0.469294 | 3_4:+56258087 | Msa0508330:CDS |
| TGTTGTTTCAGATACATAGA+TGG | 0.470430 | 3_4:+56259553 | Msa0508330:intron |
| GAGATGAGTGCATGCGATCC+TGG | 0.470780 | 3_4:-56257645 | None:intergenic |
| GTCAGGTTCTTTCTTACATG+TGG | 0.478393 | 3_4:+56260161 | Msa0508330:CDS |
| AATGATGGGGAGAGAAAAGA+AGG | 0.481215 | 3_4:-56256421 | None:intergenic |
| GATTAGAAAATGTGAAGTTA+CGG | 0.482008 | 3_4:+56259629 | Msa0508330:CDS |
| GAGTGACACCGAAAGCAGTC+TGG | 0.486184 | 3_4:-56258144 | None:intergenic |
| GCGAGCTCCGCCTAGATCCT+TGG | 0.490552 | 3_4:+56257087 | Msa0508330:CDS |
| TACATTCTTCTCTCCGACGA+TGG | 0.490881 | 3_4:-56259302 | None:intergenic |
| AGTAGTAGTGAATTTATACT+TGG | 0.492649 | 3_4:-56260570 | None:intergenic |
| CAAATCCCCATGCTTCTAGT+TGG | 0.496791 | 3_4:+56259259 | Msa0508330:CDS |
| TCCAATAGAGGAAGGGGTGG+CGG | 0.500442 | 3_4:+56257025 | Msa0508330:CDS |
| TCTCTAATAGCATGATAAAG+AGG | 0.502415 | 3_4:-56259202 | None:intergenic |
| CTCTTGTTTCTGGCATGTGA+TGG | 0.503693 | 3_4:-56259409 | None:intergenic |
| TAGAACTAGGAAGGAGGAAG+AGG | 0.505835 | 3_4:+56257430 | Msa0508330:CDS |
| AGGATAACCGTGCTAGAACT+AGG | 0.513141 | 3_4:+56257417 | Msa0508330:intron |
| AGATACTTTAGATTGGATGA+TGG | 0.513463 | 3_4:+56259121 | Msa0508330:CDS |
| GAAGTTGTTCTTATTACAGT+GGG | 0.516770 | 3_4:-56260447 | None:intergenic |
| TAAGGATATAGATGGCGAAC+GGG | 0.518979 | 3_4:+56257595 | Msa0508330:intron |
| GCCTCCTACTCGTCAAAGAA+AGG | 0.519130 | 3_4:+56260262 | Msa0508330:CDS |
| CTTGAAGCAGAAGTTATGTC+AGG | 0.522730 | 3_4:+56260184 | Msa0508330:CDS |
| TCTCTTCCAACTAGAAGCAT+GGG | 0.524105 | 3_4:-56259265 | None:intergenic |
| CACACGAATTAATGCATGGA+TGG | 0.525633 | 3_4:+56259989 | Msa0508330:CDS |
| CATTCTCTTAAATTTAAACA+AGG | 0.527645 | 3_4:-56260603 | None:intergenic |
| TCTTCTCCAGCTTATGGCGG+AGG | 0.528067 | 3_4:+56260346 | Msa0508330:CDS |
| TTCTCTTCCAACTAGAAGCA+TGG | 0.528812 | 3_4:-56259266 | None:intergenic |
| GAAGCTGCGGCTGATGTTGA+TGG | 0.531468 | 3_4:-56260220 | None:intergenic |
| CACATACCTTCCTCTACTGC+AGG | 0.531634 | 3_4:-56260139 | None:intergenic |
| GAATCTGCTATAACAGATAC+CGG | 0.533194 | 3_4:+56259169 | Msa0508330:CDS |
| ATAAGCTGGAGAAGAATCAT+TGG | 0.542129 | 3_4:-56260338 | None:intergenic |
| CCATCGCATAACAGAATATG+TGG | 0.542226 | 3_4:+56258060 | Msa0508330:CDS |
| AATTTCATGCTCGGAGGGGA+AGG | 0.543487 | 3_4:+56260529 | Msa0508330:three_prime_UTR |
| AATTGGATCCAATAGAGGAA+GGG | 0.544250 | 3_4:+56257018 | Msa0508330:CDS |
| AGAATATTGATATCTGATGA+AGG | 0.544355 | 3_4:-56256514 | None:intergenic |
| CTTCCTCTACTGCAGGATCA+AGG | 0.544617 | 3_4:-56260132 | None:intergenic |
| GAAGATTTAAAGATACCAGC+AGG | 0.544900 | 3_4:+56257485 | Msa0508330:CDS |
| CGCGCCTTTCTTTGACGAGT+AGG | 0.545826 | 3_4:-56260266 | None:intergenic |
| CAACCTTGATCCTGCAGTAG+AGG | 0.549878 | 3_4:+56260129 | Msa0508330:CDS |
| CCTCCTTCCTAGTTCTAGCA+CGG | 0.551271 | 3_4:-56257424 | None:intergenic |
| CCTGCAATTTCATGCTCGGA+GGG | 0.551389 | 3_4:+56260524 | Msa0508330:three_prime_UTR |
| TGATTATGCAAAAGGACTCC+AGG | 0.551524 | 3_4:+56257627 | Msa0508330:CDS |
| ATAAAGAGGCTGACATTCAC+CGG | 0.553374 | 3_4:-56259188 | None:intergenic |
| AGTAGAGGAAGGTATGTGTC+AGG | 0.554816 | 3_4:+56260144 | Msa0508330:CDS |
| GAAAATTTACCTGTATCCGC+GGG | 0.556759 | 3_4:-56257701 | None:intergenic |
| TGTGGGTGCAGGTTACTCAC+AGG | 0.558481 | 3_4:+56259955 | Msa0508330:intron |
| CTTTGACGAGTAGGAGGCGG+AGG | 0.559142 | 3_4:-56260257 | None:intergenic |
| ACTTTAGATTGGATGATGGA+CGG | 0.560406 | 3_4:+56259125 | Msa0508330:CDS |
| AGAAAATACCATATATGCAA+GGG | 0.562357 | 3_4:-56256543 | None:intergenic |
| AAGAAAATACCATATATGCA+AGG | 0.562532 | 3_4:-56256544 | None:intergenic |
| CTACTGCAGGATCAAGGTTG+CGG | 0.567251 | 3_4:-56260126 | None:intergenic |
| AAATTGGATCCAATAGAGGA+AGG | 0.570246 | 3_4:+56257017 | Msa0508330:CDS |
| CTTGATCCTGCAGTAGAGGA+AGG | 0.575792 | 3_4:+56260133 | Msa0508330:CDS |
| TGACAGTCTGTTCTTCTGAA+AGG | 0.579709 | 3_4:-56259439 | None:intergenic |
| GTATTATCATGTTCATGAGA+TGG | 0.579900 | 3_4:-56258946 | None:intergenic |
| AAGGTAAAGGAGCGCATGGA+GGG | 0.580876 | 3_4:-56257672 | None:intergenic |
| ATTGGATCCAATAGAGGAAG+GGG | 0.580906 | 3_4:+56257019 | Msa0508330:CDS |
| GCCTTTCTTTGACGAGTAGG+AGG | 0.581137 | 3_4:-56260263 | None:intergenic |
| TCCTGCAATTTCATGCTCGG+AGG | 0.583723 | 3_4:+56260523 | Msa0508330:three_prime_UTR |
| CCACATATTCTGTTATGCGA+TGG | 0.593174 | 3_4:-56258060 | None:intergenic |
| ACCTTCTCCTTGAAGTCTCG+GGG | 0.595508 | 3_4:+56259094 | Msa0508330:intron |
| AGAAGTTGTTCTTATTACAG+TGG | 0.596071 | 3_4:-56260448 | None:intergenic |
| TTGTTCTCTATGGTCTTCCG+AGG | 0.596093 | 3_4:+56259658 | Msa0508330:CDS |
| CATGCATTAATTCGTGTGCA+AGG | 0.599680 | 3_4:-56259984 | None:intergenic |
| CTGTAGACGAAAACATGGCT+TGG | 0.602540 | 3_4:+56257065 | Msa0508330:CDS |
| CATCACATGCCAGAAACAAG+AGG | 0.608056 | 3_4:+56259410 | Msa0508330:CDS |
| GCTATTAGAGACTATTACGA+AGG | 0.610014 | 3_4:+56259214 | Msa0508330:CDS |
| TTTCTTTGACGAGTAGGAGG+CGG | 0.611450 | 3_4:-56260260 | None:intergenic |
| GGAAAATTTACCTGTATCCG+CGG | 0.614083 | 3_4:-56257702 | None:intergenic |
| TTAAGGATATAGATGGCGAA+CGG | 0.616195 | 3_4:+56257594 | Msa0508330:intron |
| TAACCGTGCTAGAACTAGGA+AGG | 0.619072 | 3_4:+56257421 | Msa0508330:CDS |
| CTTGCACACGAATTAATGCA+TGG | 0.623299 | 3_4:+56259985 | Msa0508330:CDS |
| GATTCTTCTCCAGCTTATGG+CGG | 0.631107 | 3_4:+56260343 | Msa0508330:CDS |
| CTCTTCCAACTAGAAGCATG+GGG | 0.633927 | 3_4:-56259264 | None:intergenic |
| AAGAGAAAATGAAAATGATG+GGG | 0.641561 | 3_4:-56256434 | None:intergenic |
| GCACTTAATGAAGCCATCGT+CGG | 0.646144 | 3_4:+56259289 | Msa0508330:CDS |
| ATGATGGGGAGAGAAAAGAA+GGG | 0.646545 | 3_4:-56256420 | None:intergenic |
| TCATCCTATTACTGAGCGTG+AGG | 0.648329 | 3_4:+56258173 | Msa0508330:CDS |
| TTTCTTCTTCATACTCAGAG+AGG | 0.657884 | 3_4:+56256957 | Msa0508330:CDS |
| AGGAGGTGCCATAACGACGA+TGG | 0.659358 | 3_4:-56256494 | None:intergenic |
| ATCACATGCCAGAAACAAGA+GGG | 0.660956 | 3_4:+56259411 | Msa0508330:CDS |
| CTGCAATTTCATGCTCGGAG+GGG | 0.661590 | 3_4:+56260525 | Msa0508330:three_prime_UTR |
| TCCGAGCATGAAATTGCAGG+AGG | 0.671178 | 3_4:-56260521 | None:intergenic |
| CCGTGCTAGAACTAGGAAGG+AGG | 0.672994 | 3_4:+56257424 | Msa0508330:CDS |
| GCAACCTGTAGACGAAAACA+TGG | 0.674646 | 3_4:+56257060 | Msa0508330:CDS |
| AATATGTGGAGGATGCAACA+AGG | 0.680326 | 3_4:+56258074 | Msa0508330:CDS |
| GGATCCAATAGAGGAAGGGG+TGG | 0.681667 | 3_4:+56257022 | Msa0508330:CDS |
| AAAGGTAAAGGAGCGCATGG+AGG | 0.686908 | 3_4:-56257673 | None:intergenic |
| TCGCATAACAGAATATGTGG+AGG | 0.700111 | 3_4:+56258063 | Msa0508330:CDS |
| CTGTTTACCAAGGATCTAGG+CGG | 0.702697 | 3_4:-56257094 | None:intergenic |
| CTTTCACAGCTACAACAGCG+AGG | 0.751049 | 3_4:-56258970 | None:intergenic |
| AAAATTTACCTGTATCCGCG+GGG | 0.764166 | 3_4:-56257700 | None:intergenic |
| ATATTGATATCTGATGAAGG+AGG | 0.767738 | 3_4:-56256511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTCTTGTTTTTTATTTT+TGG | + | chr3_4:56256673-56256692 | Msa0508330:intron | 10.0% |
| !! | TTTATTTATGTATAAGTTAT+AGG | - | chr3_4:56256768-56256787 | None:intergenic | 10.0% |
| !! | CTAAATGATTACAAATAAAT+AGG | - | chr3_4:56258694-56258713 | None:intergenic | 15.0% |
| !! | GTATTAAATATTAATTACCT+CGG | - | chr3_4:56259678-56259697 | None:intergenic | 15.0% |
| !! | GTTTATAAATATAACCTTTA+AGG | - | chr3_4:56260020-56260039 | None:intergenic | 15.0% |
| !! | ACCAAAAAATCTATACATAT+AGG | + | chr3_4:56256468-56256487 | Msa0508330:five_prime_UTR | 20.0% |
| !! | TAAATAGATATACATAAGGA+AGG | - | chr3_4:56256591-56256610 | None:intergenic | 20.0% |
| !! | AAAATTGCAACAACAAAAAA+GGG | - | chr3_4:56256919-56256938 | None:intergenic | 20.0% |
| !! | TTATATTTATTTCCATCTCA+AGG | + | chr3_4:56257220-56257239 | Msa0508330:intron | 20.0% |
| !! | TTCAATAAATCAATATCTGA+TGG | + | chr3_4:56257995-56258014 | Msa0508330:intron | 20.0% |
| !! | TTAAAACAATACTTGTGATA+TGG | - | chr3_4:56258449-56258468 | None:intergenic | 20.0% |
| !!! | ATATCACAAGTATTGTTTTA+AGG | + | chr3_4:56258448-56258467 | Msa0508330:intron | 20.0% |
| !! | AAGAAAAACTTACATAATGA+TGG | - | chr3_4:56258502-56258521 | None:intergenic | 20.0% |
| !! | TAGTTTAAGTCATTAAATGT+CGG | + | chr3_4:56258575-56258594 | Msa0508330:intron | 20.0% |
| !! | AATGTCATAAGAAAACTATT+TGG | - | chr3_4:56258630-56258649 | None:intergenic | 20.0% |
| !! | TTATTTCCATGATCTTAAAA+AGG | - | chr3_4:56259025-56259044 | None:intergenic | 20.0% |
| !! | AACAGAAAATCGTAAATAAA+TGG | - | chr3_4:56259537-56259556 | None:intergenic | 20.0% |
| !!! | CATTTTCTAATCAATTTTTG+AGG | - | chr3_4:56259621-56259640 | None:intergenic | 20.0% |
| !!! | GTACTAATTTTTTTTCAAAG+TGG | - | chr3_4:56259748-56259767 | None:intergenic | 20.0% |
| !!! | ATCATTTTCTCAAAATTCAT+AGG | - | chr3_4:56259770-56259789 | None:intergenic | 20.0% |
| !! | TCATTTATCTTAATCTAATC+AGG | + | chr3_4:56260100-56260119 | Msa0508330:intron | 20.0% |
| ! | AAGAGAAAATGAAAATGATG+GGG | - | chr3_4:56256437-56256456 | None:intergenic | 25.0% |
| ! | CAAGAGAAAATGAAAATGAT+GGG | - | chr3_4:56256438-56256457 | None:intergenic | 25.0% |
| !!! | GCCTATATGTATAGATTTTT+TGG | - | chr3_4:56256472-56256491 | None:intergenic | 25.0% |
| ! | AGAATATTGATATCTGATGA+AGG | - | chr3_4:56256517-56256536 | None:intergenic | 25.0% |
| ! | AGAAAATACCATATATGCAA+GGG | - | chr3_4:56256546-56256565 | None:intergenic | 25.0% |
| ! | AAGAAAATACCATATATGCA+AGG | - | chr3_4:56256547-56256566 | None:intergenic | 25.0% |
| ! | ATACATAAGGAAGGAAAAAT+AGG | - | chr3_4:56256582-56256601 | None:intergenic | 25.0% |
| !! | GCTCTAAATAGATATACATA+AGG | - | chr3_4:56256595-56256614 | None:intergenic | 25.0% |
| !! | TATATCTATTTAGAGCTTCA+TGG | + | chr3_4:56256599-56256618 | Msa0508330:intron | 25.0% |
| ! | CAAAATTGCAACAACAAAAA+AGG | - | chr3_4:56256920-56256939 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTGTTGCAATTT+TGG | + | chr3_4:56256918-56256937 | Msa0508330:intron | 25.0% |
| !! | TTTGGCAAGATTTTCAAAAT+TGG | + | chr3_4:56257001-56257020 | Msa0508330:CDS | 25.0% |
| ! | TAATTGAATTAACCTTGAGA+TGG | - | chr3_4:56257235-56257254 | None:intergenic | 25.0% |
| !! | TTTTGAATTTTAGACTGTGT+AGG | + | chr3_4:56257316-56257335 | Msa0508330:intron | 25.0% |
| ! | ATTGTTTAGTACATTGATCT+AGG | - | chr3_4:56257382-56257401 | None:intergenic | 25.0% |
| ! | ACAATATTCTTGATGCTAAT+AGG | + | chr3_4:56257397-56257416 | Msa0508330:intron | 25.0% |
| !! | TTATTTGCATTTTCTCGTTA+AGG | + | chr3_4:56257577-56257596 | Msa0508330:intron | 25.0% |
| ! | AATCTTGACTTATATGAAGT+TGG | - | chr3_4:56257770-56257789 | None:intergenic | 25.0% |
| ! | AAAACACTGTTCAAATTCAA+AGG | - | chr3_4:56257872-56257891 | None:intergenic | 25.0% |
| !! | TGTAAATAGCATGATTTTGT+CGG | - | chr3_4:56258319-56258338 | None:intergenic | 25.0% |
| ! | TTGTGAAAAAAGAAATGGAA+GGG | - | chr3_4:56258526-56258545 | None:intergenic | 25.0% |
| ! | ATTGTGAAAAAAGAAATGGA+AGG | - | chr3_4:56258527-56258546 | None:intergenic | 25.0% |
| ! | AAGAAAACTAATAACCAAGT+AGG | - | chr3_4:56258552-56258571 | None:intergenic | 25.0% |
| ! | CATTGATCAATCATATGATA+TGG | + | chr3_4:56258739-56258758 | Msa0508330:intron | 25.0% |
| !!! | CTAGTTTTCTGATATATCAA+TGG | - | chr3_4:56258777-56258796 | None:intergenic | 25.0% |
| !!! | AATATTTTTGGTTCCAATAG+GGG | - | chr3_4:56258924-56258943 | None:intergenic | 25.0% |
| !!! | CAATATTTTTGGTTCCAATA+GGG | - | chr3_4:56258925-56258944 | None:intergenic | 25.0% |
| !!! | ACAATATTTTTGGTTCCAAT+AGG | - | chr3_4:56258926-56258945 | None:intergenic | 25.0% |
| !!! | TTATCTCCTTTTTAAGATCA+TGG | + | chr3_4:56259016-56259035 | Msa0508330:intron | 25.0% |
| ! | TCTGATAAAACAAAAACAGA+AGG | - | chr3_4:56259485-56259504 | None:intergenic | 25.0% |
| ! | ATACATAGATGGTCAAAAAT+TGG | + | chr3_4:56259564-56259583 | Msa0508330:CDS | 25.0% |
| ! | GATTAGAAAATGTGAAGTTA+CGG | + | chr3_4:56259629-56259648 | Msa0508330:CDS | 25.0% |
| ! | AGTTTCGATAACAATTTAGA+TGG | + | chr3_4:56259794-56259813 | Msa0508330:intron | 25.0% |
| !! | ATTAACCATGATTTTGAATG+CGG | + | chr3_4:56259848-56259867 | Msa0508330:intron | 25.0% |
| !! | AATTTTACACCTGAAAATTG+TGG | - | chr3_4:56259875-56259894 | None:intergenic | 25.0% |
| ! | AAGTGTTCTGATATATTTGT+GGG | + | chr3_4:56259938-56259957 | Msa0508330:intron | 25.0% |
| ! | AAGTAAGTCATGTAATACTA+AGG | - | chr3_4:56260070-56260089 | None:intergenic | 25.0% |
| ! | ATCCAAAGTTGAGAATAAAT+TGG | + | chr3_4:56260291-56260310 | Msa0508330:CDS | 25.0% |
| ! | TCCAAAGTTGAGAATAAATT+GGG | + | chr3_4:56260292-56260311 | Msa0508330:CDS | 25.0% |
| ! | AATGCAGCTGTTAATAAATA+CGG | + | chr3_4:56260382-56260401 | Msa0508330:CDS | 25.0% |
| ! | AGTAGTAGTGAATTTATACT+TGG | - | chr3_4:56260489-56260508 | None:intergenic | 25.0% |
| GCAAGAGAAAATGAAAATGA+TGG | - | chr3_4:56256439-56256458 | None:intergenic | 30.0% | |
| ATATTGATATCTGATGAAGG+AGG | - | chr3_4:56256514-56256533 | None:intergenic | 30.0% | |
| AGGAAGGAAAAATAGGAAAA+AGG | - | chr3_4:56256575-56256594 | None:intergenic | 30.0% | |
| CAAATTTCGCATATCAACAA+GGG | - | chr3_4:56256864-56256883 | None:intergenic | 30.0% | |
| TCAAATTTCGCATATCAACA+AGG | - | chr3_4:56256865-56256884 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTGCAATTTTGG+TGG | + | chr3_4:56256921-56256940 | Msa0508330:intron | 30.0% |
| !!! | TTTGTTGTTGCAATTTTGGT+GGG | + | chr3_4:56256922-56256941 | Msa0508330:intron | 30.0% |
| !!! | TCTGGTTTTATGAAATGGTT+TGG | + | chr3_4:56256983-56257002 | Msa0508330:CDS | 30.0% |
| TTCAAAATTGGATCCAATAG+AGG | + | chr3_4:56257013-56257032 | Msa0508330:CDS | 30.0% | |
| TTTCTCGTTAAGGATATAGA+TGG | + | chr3_4:56257587-56257606 | Msa0508330:intron | 30.0% | |
| ! | ACTGATGATGATTATGCAAA+AGG | + | chr3_4:56257619-56257638 | Msa0508330:CDS | 30.0% |
| ! | GTACTGATCAAAATTAGAAG+AGG | - | chr3_4:56257726-56257745 | None:intergenic | 30.0% |
| GATACTCTATGGTAATTGTT+TGG | + | chr3_4:56258098-56258117 | Msa0508330:CDS | 30.0% | |
| TGTGAAAAAAGAAATGGAAG+GGG | - | chr3_4:56258525-56258544 | None:intergenic | 30.0% | |
| GGACATTGTGAAAAAAGAAA+TGG | - | chr3_4:56258531-56258550 | None:intergenic | 30.0% | |
| !!! | TTTTTTCACAATGTCCTACT+TGG | + | chr3_4:56258535-56258554 | Msa0508330:intron | 30.0% |
| AATTGAAGTCGTCGTTAAAA+TGG | + | chr3_4:56258662-56258681 | Msa0508330:intron | 30.0% | |
| ATCAAACCAGAACCATTTAT+AGG | - | chr3_4:56258886-56258905 | None:intergenic | 30.0% | |
| ! | CATGAGATGGACAATATTTT+TGG | - | chr3_4:56258936-56258955 | None:intergenic | 30.0% |
| GTATTATCATGTTCATGAGA+TGG | - | chr3_4:56258949-56258968 | None:intergenic | 30.0% | |
| AGATACTTTAGATTGGATGA+TGG | + | chr3_4:56259121-56259140 | Msa0508330:CDS | 30.0% | |
| TCTCTAATAGCATGATAAAG+AGG | - | chr3_4:56259205-56259224 | None:intergenic | 30.0% | |
| ! | TATGACGGAAAAACAAAGAA+TGG | - | chr3_4:56259338-56259357 | None:intergenic | 30.0% |
| !!! | ATTCTTTGTTTTTCCGTCAT+AGG | + | chr3_4:56259337-56259356 | Msa0508330:intron | 30.0% |
| AAGGAAATCAATTCCTATGA+CGG | - | chr3_4:56259353-56259372 | None:intergenic | 30.0% | |
| AAGCAATTAGCAAGAGTAAA+AGG | - | chr3_4:56259372-56259391 | None:intergenic | 30.0% | |
| ! | TTTTACTCTTGCTAATTGCT+TGG | + | chr3_4:56259371-56259390 | Msa0508330:intron | 30.0% |
| !! | TGTTGTTTCAGATACATAGA+TGG | + | chr3_4:56259553-56259572 | Msa0508330:intron | 30.0% |
| CAAGTGTTCTGATATATTTG+TGG | + | chr3_4:56259937-56259956 | Msa0508330:intron | 30.0% | |
| ACCCAATTTATTCTCAACTT+TGG | - | chr3_4:56260296-56260315 | None:intergenic | 30.0% | |
| GAAGTTGTTCTTATTACAGT+GGG | - | chr3_4:56260450-56260469 | None:intergenic | 30.0% | |
| AGAAGTTGTTCTTATTACAG+TGG | - | chr3_4:56260451-56260470 | None:intergenic | 30.0% | |
| AGTTCTCTAATATCGCATCA+CGG | - | chr3_4:56256718-56256737 | None:intergenic | 35.0% | |
| TTTCTTCTTCATACTCAGAG+AGG | + | chr3_4:56256957-56256976 | Msa0508330:CDS | 35.0% | |
| !!! | GGAAGTCTGGTTTTATGAAA+TGG | + | chr3_4:56256978-56256997 | Msa0508330:CDS | 35.0% |
| AAATTGGATCCAATAGAGGA+AGG | + | chr3_4:56257017-56257036 | Msa0508330:CDS | 35.0% | |
| AATTGGATCCAATAGAGGAA+GGG | + | chr3_4:56257018-56257037 | Msa0508330:CDS | 35.0% | |
| AAAGCAGATAGTTGAGTCAT+TGG | - | chr3_4:56257122-56257141 | None:intergenic | 35.0% | |
| GAAGATTTAAAGATACCAGC+AGG | + | chr3_4:56257485-56257504 | Msa0508330:CDS | 35.0% | |
| ATTTAAAGATACCAGCAGGT+AGG | + | chr3_4:56257489-56257508 | Msa0508330:intron | 35.0% | |
| TTAAGGATATAGATGGCGAA+CGG | + | chr3_4:56257594-56257613 | Msa0508330:intron | 35.0% | |
| TTGACTTATATGAAGTTGGC+TGG | - | chr3_4:56257766-56257785 | None:intergenic | 35.0% | |
| ! | ATTTTCATCCAGACTGCTTT+CGG | + | chr3_4:56258136-56258155 | Msa0508330:CDS | 35.0% |
| ! | CCTCTTTTATCCATCTCTTA+CGG | + | chr3_4:56258379-56258398 | Msa0508330:intron | 35.0% |
| CTTGGATCAACAGAAACAAA+AGG | - | chr3_4:56258405-56258424 | None:intergenic | 35.0% | |
| ! | TGATCCAAGTTTTCTTTGTC+AGG | + | chr3_4:56258416-56258435 | Msa0508330:intron | 35.0% |
| ! | GATCCAAGTTTTCTTTGTCA+GGG | + | chr3_4:56258417-56258436 | Msa0508330:intron | 35.0% |
| TGATGGCAAACTTCACATTT+AGG | - | chr3_4:56258485-56258504 | None:intergenic | 35.0% | |
| CACTTGCAGATACCTATAAA+TGG | + | chr3_4:56258871-56258890 | Msa0508330:intron | 35.0% | |
| CAGATACCTATAAATGGTTC+TGG | + | chr3_4:56258877-56258896 | Msa0508330:intron | 35.0% | |
| !! | GTTCTGGTTTGATTGAGTAT+AGG | + | chr3_4:56258893-56258912 | Msa0508330:CDS | 35.0% |
| TTGTAGCTGTGAAAGATTAG+AGG | + | chr3_4:56258978-56258997 | Msa0508330:CDS | 35.0% | |
| GGGAGAAAGATACTTTAGAT+TGG | + | chr3_4:56259114-56259133 | Msa0508330:CDS | 35.0% | |
| !! | ACTTTAGATTGGATGATGGA+CGG | + | chr3_4:56259125-56259144 | Msa0508330:CDS | 35.0% |
| !! | GATTTTGTGCTTTGAATGCA+TGG | + | chr3_4:56259147-56259166 | Msa0508330:CDS | 35.0% |
| GAATCTGCTATAACAGATAC+CGG | + | chr3_4:56259169-56259188 | Msa0508330:CDS | 35.0% | |
| GCTATTAGAGACTATTACGA+AGG | + | chr3_4:56259214-56259233 | Msa0508330:CDS | 35.0% | |
| ACGGAAAAACAAAGAATGGA+TGG | - | chr3_4:56259334-56259353 | None:intergenic | 35.0% | |
| TAATTGCTTGGTTTCTACCA+GGG | + | chr3_4:56259383-56259402 | Msa0508330:intron | 35.0% | |
| !! | AGGCATTGAAAATCATACAC+TGG | - | chr3_4:56259465-56259484 | None:intergenic | 35.0% |
| CATAGATGGTCAAAAATTGG+AGG | + | chr3_4:56259567-56259586 | Msa0508330:CDS | 35.0% | |
| ! | ATTGGAGGTCATCGATTAAT+AGG | + | chr3_4:56259582-56259601 | Msa0508330:CDS | 35.0% |
| ! | TTGGAGGTCATCGATTAATA+GGG | + | chr3_4:56259583-56259602 | Msa0508330:CDS | 35.0% |
| CAAAGTGGATCATCTGTAAT+TGG | - | chr3_4:56259733-56259752 | None:intergenic | 35.0% | |
| TCATGGTTAATTGTGTTGAG+CGG | - | chr3_4:56259839-56259858 | None:intergenic | 35.0% | |
| ATAAGCTGGAGAAGAATCAT+TGG | - | chr3_4:56260341-56260360 | None:intergenic | 35.0% | |
| AATGATTCTTCTCCAGCTTA+TGG | + | chr3_4:56260340-56260359 | Msa0508330:CDS | 35.0% | |
| ! | CTTCTCTGAGAAGTTTGAAT+TGG | + | chr3_4:56260466-56260485 | Msa0508330:three_prime_UTR | 35.0% |
| ! | ATGATGGGGAGAGAAAAGAA+GGG | - | chr3_4:56256423-56256442 | None:intergenic | 40.0% |
| ! | AATGATGGGGAGAGAAAAGA+AGG | - | chr3_4:56256424-56256443 | None:intergenic | 40.0% |
| CTTTCACACCCTTGCATATA+TGG | + | chr3_4:56256535-56256554 | Msa0508330:CDS | 40.0% | |
| ATTGGATCCAATAGAGGAAG+GGG | + | chr3_4:56257019-56257038 | Msa0508330:CDS | 40.0% | |
| GTTCTGTTTACCAAGGATCT+AGG | - | chr3_4:56257100-56257119 | None:intergenic | 40.0% | |
| !! | GTCATTGGTTCTGTTTACCA+AGG | - | chr3_4:56257107-56257126 | None:intergenic | 40.0% |
| TGTTGTTGCACATGTCAAGT+TGG | + | chr3_4:56257191-56257210 | Msa0508330:intron | 40.0% | |
| CGAACTGTTTGCATTTCGAA+CGG | - | chr3_4:56257282-56257301 | None:intergenic | 40.0% | |
| CGTTCGAAATGCAAACAGTT+CGG | + | chr3_4:56257280-56257299 | Msa0508330:intron | 40.0% | |
| GAAAATTAGTACCTACCTGC+TGG | - | chr3_4:56257503-56257522 | None:intergenic | 40.0% | |
| TAAGGATATAGATGGCGAAC+GGG | + | chr3_4:56257595-56257614 | Msa0508330:intron | 40.0% | |
| TGATTATGCAAAAGGACTCC+AGG | + | chr3_4:56257627-56257646 | Msa0508330:CDS | 40.0% | |
| ! | TAAAAAGGTAAAGGAGCGCA+TGG | - | chr3_4:56257679-56257698 | None:intergenic | 40.0% |
| AAAATTTACCTGTATCCGCG+GGG | - | chr3_4:56257703-56257722 | None:intergenic | 40.0% | |
| GAAAATTTACCTGTATCCGC+GGG | - | chr3_4:56257704-56257723 | None:intergenic | 40.0% | |
| GGAAAATTTACCTGTATCCG+CGG | - | chr3_4:56257705-56257724 | None:intergenic | 40.0% | |
| CCACATATTCTGTTATGCGA+TGG | - | chr3_4:56258063-56258082 | None:intergenic | 40.0% | |
| CCATCGCATAACAGAATATG+TGG | + | chr3_4:56258060-56258079 | Msa0508330:CDS | 40.0% | |
| TCGCATAACAGAATATGTGG+AGG | + | chr3_4:56258063-56258082 | Msa0508330:CDS | 40.0% | |
| AATATGTGGAGGATGCAACA+AGG | + | chr3_4:56258074-56258093 | Msa0508330:CDS | 40.0% | |
| TGCAACAAGGAGATACTCTA+TGG | + | chr3_4:56258087-56258106 | Msa0508330:CDS | 40.0% | |
| AATACCTCACGCTCAGTAAT+AGG | - | chr3_4:56258180-56258199 | None:intergenic | 40.0% | |
| CCGTAAGAGATGGATAAAAG+AGG | - | chr3_4:56258382-56258401 | None:intergenic | 40.0% | |
| AAACAAAAGGCCGTAAGAGA+TGG | - | chr3_4:56258392-56258411 | None:intergenic | 40.0% | |
| CTTCCCTGACAAAGAAAACT+TGG | - | chr3_4:56258423-56258442 | None:intergenic | 40.0% | |
| GGCAAACTTCACATTTAGGA+TGG | - | chr3_4:56258481-56258500 | None:intergenic | 40.0% | |
| TTACCTTCTCCTTGAAGTCT+CGG | + | chr3_4:56259092-56259111 | Msa0508330:intron | 40.0% | |
| ATAAAGAGGCTGACATTCAC+CGG | - | chr3_4:56259191-56259210 | None:intergenic | 40.0% | |
| ! | TCTCTTCCAACTAGAAGCAT+GGG | - | chr3_4:56259268-56259287 | None:intergenic | 40.0% |
| TTCTCTTCCAACTAGAAGCA+TGG | - | chr3_4:56259269-56259288 | None:intergenic | 40.0% | |
| CTAATTGCTTGGTTTCTACC+AGG | + | chr3_4:56259382-56259401 | Msa0508330:intron | 40.0% | |
| ATCACATGCCAGAAACAAGA+GGG | + | chr3_4:56259411-56259430 | Msa0508330:CDS | 40.0% | |
| TGACAGTCTGTTCTTCTGAA+AGG | - | chr3_4:56259442-56259461 | None:intergenic | 40.0% | |
| ACGGCTATTCTTGTTCTCTA+TGG | + | chr3_4:56259648-56259667 | Msa0508330:CDS | 40.0% | |
| TCTGATATATTTGTGGGTGC+AGG | + | chr3_4:56259944-56259963 | Msa0508330:intron | 40.0% | |
| CATGCATTAATTCGTGTGCA+AGG | - | chr3_4:56259987-56260006 | None:intergenic | 40.0% | |
| CTTGCACACGAATTAATGCA+TGG | + | chr3_4:56259985-56260004 | Msa0508330:CDS | 40.0% | |
| CACACGAATTAATGCATGGA+TGG | + | chr3_4:56259989-56260008 | Msa0508330:CDS | 40.0% | |
| GTCAGGTTCTTTCTTACATG+TGG | + | chr3_4:56260161-56260180 | Msa0508330:CDS | 40.0% | |
| CTTGAAGCAGAAGTTATGTC+AGG | + | chr3_4:56260184-56260203 | Msa0508330:CDS | 40.0% | |
| AGAAGAAGAAGAAGAAGCTG+CGG | - | chr3_4:56260236-56260255 | None:intergenic | 40.0% | |
| GAGAAGAATCATTGGCAATC+TGG | - | chr3_4:56260333-56260352 | None:intergenic | 40.0% | |
| ACTGACCAGTCAAACGAATA+TGG | - | chr3_4:56260426-56260445 | None:intergenic | 40.0% | |
| ATAGGCTTCCATCGTCGTTA+TGG | + | chr3_4:56256486-56256505 | Msa0508330:exon | 45.0% | |
| !! | TTGCAATTTTGGTGGGAAGC+AGG | + | chr3_4:56256929-56256948 | Msa0508330:intron | 45.0% |
| !! | TGCAATTTTGGTGGGAAGCA+GGG | + | chr3_4:56256930-56256949 | Msa0508330:intron | 45.0% |
| TCATACTCAGAGAGGAAGTC+TGG | + | chr3_4:56256965-56256984 | Msa0508330:CDS | 45.0% | |
| GCAACCTGTAGACGAAAACA+TGG | + | chr3_4:56257060-56257079 | Msa0508330:CDS | 45.0% | |
| ! | CAAGCCATGTTTTCGTCTAC+AGG | - | chr3_4:56257067-56257086 | None:intergenic | 45.0% |
| CTGTAGACGAAAACATGGCT+TGG | + | chr3_4:56257065-56257084 | Msa0508330:CDS | 45.0% | |
| CTGTTTACCAAGGATCTAGG+CGG | - | chr3_4:56257097-56257116 | None:intergenic | 45.0% | |
| AGGATAACCGTGCTAGAACT+AGG | + | chr3_4:56257417-56257436 | Msa0508330:intron | 45.0% | |
| TAACCGTGCTAGAACTAGGA+AGG | + | chr3_4:56257421-56257440 | Msa0508330:CDS | 45.0% | |
| TAGAACTAGGAAGGAGGAAG+AGG | + | chr3_4:56257430-56257449 | Msa0508330:CDS | 45.0% | |
| ! | CCTTTACCTTTTTATCCCCG+CGG | + | chr3_4:56257685-56257704 | Msa0508330:CDS | 45.0% |
| TCATCCTATTACTGAGCGTG+AGG | + | chr3_4:56258173-56258192 | Msa0508330:CDS | 45.0% | |
| GCCTCAACACACATTTACAC+AGG | + | chr3_4:56258253-56258272 | Msa0508330:intron | 45.0% | |
| GCCTGTGTAAATGTGTGTTG+AGG | - | chr3_4:56258257-56258276 | None:intergenic | 45.0% | |
| ! | AGTATAGGTGTCACCCCTAT+TGG | + | chr3_4:56258908-56258927 | Msa0508330:CDS | 45.0% |
| TACCTTCTCCTTGAAGTCTC+GGG | + | chr3_4:56259093-56259112 | Msa0508330:intron | 45.0% | |
| CAAATCCCCATGCTTCTAGT+TGG | + | chr3_4:56259259-56259278 | Msa0508330:CDS | 45.0% | |
| ! | CTCTTCCAACTAGAAGCATG+GGG | - | chr3_4:56259267-56259286 | None:intergenic | 45.0% |
| GCACTTAATGAAGCCATCGT+CGG | + | chr3_4:56259289-56259308 | Msa0508330:CDS | 45.0% | |
| TACATTCTTCTCTCCGACGA+TGG | - | chr3_4:56259305-56259324 | None:intergenic | 45.0% | |
| !! | CTCTTGTTTCTGGCATGTGA+TGG | - | chr3_4:56259412-56259431 | None:intergenic | 45.0% |
| CATCACATGCCAGAAACAAG+AGG | + | chr3_4:56259410-56259429 | Msa0508330:CDS | 45.0% | |
| ! | AGGCATAACCCTCTTGTTTC+TGG | - | chr3_4:56259422-56259441 | None:intergenic | 45.0% |
| TTGTTCTCTATGGTCTTCCG+AGG | + | chr3_4:56259658-56259677 | Msa0508330:CDS | 45.0% | |
| GGTTAATTGTGTTGAGCGGA+TGG | - | chr3_4:56259835-56259854 | None:intergenic | 45.0% | |
| GTGGTCCGCATTCAAAATCA+TGG | - | chr3_4:56259856-56259875 | None:intergenic | 45.0% | |
| ! | GAATGCGGACCACAATTTTC+AGG | + | chr3_4:56259863-56259882 | Msa0508330:intron | 45.0% |
| CATGGATGGTTACGCCTTAA+AGG | + | chr3_4:56260003-56260022 | Msa0508330:CDS | 45.0% | |
| ! | AGTAGAGGAAGGTATGTGTC+AGG | + | chr3_4:56260144-56260163 | Msa0508330:CDS | 45.0% |
| TTTCTTTGACGAGTAGGAGG+CGG | - | chr3_4:56260263-56260282 | None:intergenic | 45.0% | |
| GATTCTTCTCCAGCTTATGG+CGG | + | chr3_4:56260343-56260362 | Msa0508330:CDS | 45.0% | |
| CTCGACCATATTCGTTTGAC+TGG | + | chr3_4:56260418-56260437 | Msa0508330:CDS | 45.0% | |
| TCCTCCTGCAATTTCATGCT+CGG | + | chr3_4:56260520-56260539 | Msa0508330:three_prime_UTR | 45.0% | |
| !! | GCAATTTTGGTGGGAAGCAG+GGG | + | chr3_4:56256931-56256950 | Msa0508330:intron | 50.0% |
| !! | CCTCCTTCCTAGTTCTAGCA+CGG | - | chr3_4:56257427-56257446 | None:intergenic | 50.0% |
| ! | AAGGTAAAGGAGCGCATGGA+GGG | - | chr3_4:56257675-56257694 | None:intergenic | 50.0% |
| ! | AAAGGTAAAGGAGCGCATGG+AGG | - | chr3_4:56257676-56257695 | None:intergenic | 50.0% |
| CCGCGGGGATAAAAAGGTAA+AGG | - | chr3_4:56257688-56257707 | None:intergenic | 50.0% | |
| CTGTATCCGCGGGGATAAAA+AGG | - | chr3_4:56257694-56257713 | None:intergenic | 50.0% | |
| ! | CTTTTTATCCCCGCGGATAC+AGG | + | chr3_4:56257692-56257711 | Msa0508330:CDS | 50.0% |
| CTTTCACAGCTACAACAGCG+AGG | - | chr3_4:56258973-56258992 | None:intergenic | 50.0% | |
| ACCTTCTCCTTGAAGTCTCG+GGG | + | chr3_4:56259094-56259113 | Msa0508330:intron | 50.0% | |
| TCTTTCTCCCCGAGACTTCA+AGG | - | chr3_4:56259104-56259123 | None:intergenic | 50.0% | |
| CTACTGCAGGATCAAGGTTG+CGG | - | chr3_4:56260129-56260148 | None:intergenic | 50.0% | |
| CAACCTTGATCCTGCAGTAG+AGG | + | chr3_4:56260129-56260148 | Msa0508330:CDS | 50.0% | |
| CTTCCTCTACTGCAGGATCA+AGG | - | chr3_4:56260135-56260154 | None:intergenic | 50.0% | |
| CTTGATCCTGCAGTAGAGGA+AGG | + | chr3_4:56260133-56260152 | Msa0508330:CDS | 50.0% | |
| CACATACCTTCCTCTACTGC+AGG | - | chr3_4:56260142-56260161 | None:intergenic | 50.0% | |
| GCCTCCTACTCGTCAAAGAA+AGG | + | chr3_4:56260262-56260281 | Msa0508330:CDS | 50.0% | |
| GCCTTTCTTTGACGAGTAGG+AGG | - | chr3_4:56260266-56260285 | None:intergenic | 50.0% | |
| TCCGAGCATGAAATTGCAGG+AGG | - | chr3_4:56260524-56260543 | None:intergenic | 50.0% | |
| TCCTGCAATTTCATGCTCGG+AGG | + | chr3_4:56260523-56260542 | Msa0508330:three_prime_UTR | 50.0% | |
| CCTGCAATTTCATGCTCGGA+GGG | + | chr3_4:56260524-56260543 | Msa0508330:three_prime_UTR | 50.0% | |
| CTGCAATTTCATGCTCGGAG+GGG | + | chr3_4:56260525-56260544 | Msa0508330:three_prime_UTR | 50.0% | |
| AATTTCATGCTCGGAGGGGA+AGG | + | chr3_4:56260529-56260548 | Msa0508330:three_prime_UTR | 50.0% | |
| !! | AGGAGGTGCCATAACGACGA+TGG | - | chr3_4:56256497-56256516 | None:intergenic | 55.0% |
| GGATCCAATAGAGGAAGGGG+TGG | + | chr3_4:56257022-56257041 | Msa0508330:CDS | 55.0% | |
| TCCAATAGAGGAAGGGGTGG+CGG | + | chr3_4:56257025-56257044 | Msa0508330:CDS | 55.0% | |
| CCGTGCTAGAACTAGGAAGG+AGG | + | chr3_4:56257424-56257443 | Msa0508330:CDS | 55.0% | |
| GAGATGAGTGCATGCGATCC+TGG | - | chr3_4:56257648-56257667 | None:intergenic | 55.0% | |
| GAGTGACACCGAAAGCAGTC+TGG | - | chr3_4:56258147-56258166 | None:intergenic | 55.0% | |
| TCCCCGAGACTTCAAGGAGA+AGG | - | chr3_4:56259098-56259117 | None:intergenic | 55.0% | |
| ! | CTGGCATGTGATGGAAACCC+TGG | - | chr3_4:56259403-56259422 | None:intergenic | 55.0% |
| TGTGGGTGCAGGTTACTCAC+AGG | + | chr3_4:56259955-56259974 | Msa0508330:intron | 55.0% | |
| GAAGCTGCGGCTGATGTTGA+TGG | - | chr3_4:56260223-56260242 | None:intergenic | 55.0% | |
| CGCGCCTTTCTTTGACGAGT+AGG | - | chr3_4:56260269-56260288 | None:intergenic | 55.0% | |
| TCTTCTCCAGCTTATGGCGG+AGG | + | chr3_4:56260346-56260365 | Msa0508330:CDS | 55.0% | |
| CTAAAGCCTCCGCCATAAGC+TGG | - | chr3_4:56260355-56260374 | None:intergenic | 55.0% | |
| ! | CAGCTTATGGCGGAGGCTTT+AGG | + | chr3_4:56260353-56260372 | Msa0508330:CDS | 55.0% |
| CCCTCCGAGCATGAAATTGC+AGG | - | chr3_4:56260527-56260546 | None:intergenic | 55.0% | |
| ACCGCCACCCCTTCCTCTAT+TGG | - | chr3_4:56257029-56257048 | None:intergenic | 60.0% | |
| CTTTGACGAGTAGGAGGCGG+AGG | - | chr3_4:56260260-56260279 | None:intergenic | 60.0% | |
| GCGAGCTCCGCCTAGATCCT+TGG | + | chr3_4:56257087-56257106 | Msa0508330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 56256409 | 56260620 | 56256409 | ID=Msa0508330;Name=Msa0508330 |
| chr3_4 | mRNA | 56256409 | 56260620 | 56256409 | ID=Msa0508330-mRNA-1;Parent=Msa0508330;Name=Msa0508330-mRNA-1;_AED=0.16;_eAED=0.16;_QI=96|0.9|1|1|1|1|11|164|485 |
| chr3_4 | exon | 56256409 | 56256556 | 56256409 | ID=Msa0508330-mRNA-1:exon:12659;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56256951 | 56257108 | 56256951 | ID=Msa0508330-mRNA-1:exon:12660;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56257419 | 56257506 | 56257419 | ID=Msa0508330-mRNA-1:exon:12661;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56257599 | 56257713 | 56257599 | ID=Msa0508330-mRNA-1:exon:12662;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56258056 | 56258194 | 56258056 | ID=Msa0508330-mRNA-1:exon:12663;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56258880 | 56258999 | 56258880 | ID=Msa0508330-mRNA-1:exon:12664;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56259109 | 56259321 | 56259109 | ID=Msa0508330-mRNA-1:exon:12665;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56259404 | 56259466 | 56259404 | ID=Msa0508330-mRNA-1:exon:12666;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56259564 | 56259679 | 56259564 | ID=Msa0508330-mRNA-1:exon:12667;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56259966 | 56260024 | 56259966 | ID=Msa0508330-mRNA-1:exon:12668;Parent=Msa0508330-mRNA-1 |
| chr3_4 | exon | 56260122 | 56260620 | 56260122 | ID=Msa0508330-mRNA-1:exon:12669;Parent=Msa0508330-mRNA-1 |
| chr3_4 | five_prime_UTR | 56256409 | 56256504 | 56256409 | ID=Msa0508330-mRNA-1:five_prime_utr;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56256505 | 56256556 | 56256505 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56256951 | 56257108 | 56256951 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56257419 | 56257506 | 56257419 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56257599 | 56257713 | 56257599 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56258056 | 56258194 | 56258056 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56258880 | 56258999 | 56258880 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56259109 | 56259321 | 56259109 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56259404 | 56259466 | 56259404 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56259564 | 56259679 | 56259564 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56259966 | 56260024 | 56259966 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | CDS | 56260122 | 56260456 | 56260122 | ID=Msa0508330-mRNA-1:cds;Parent=Msa0508330-mRNA-1 |
| chr3_4 | three_prime_UTR | 56260457 | 56260620 | 56260457 | ID=Msa0508330-mRNA-1:three_prime_utr;Parent=Msa0508330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
