AlfalfaGEDB | Msa1363310

M. sativa cultivar zhongmu-4 / Msa1363310

KEGG: K04371|K04464|K20600
GO: GO:0000003 GO:0000165 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006971 GO:0006972 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009504 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009861 GO:0009862 GO:0009863 GO:0009867 GO:0009868 GO:0009987 GO:0010033 GO:0010468 GO:0014070 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0023014 GO:0023052 GO:0030865 GO:0031122 GO:0032260 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032870 GO:0033206 GO:0033993 GO:0035556 GO:0035690 GO:0035821 GO:0036211 GO:0042221 GO:0042493 GO:0042539 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043622 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045087 GO:0046677 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051321 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052306 GO:0052308 GO:0052552 GO:0052553 GO:0052564 GO:0052572 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071840 GO:0075136 GO:0097305 GO:0097435 GO:0098542 GO:0140013 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902410 GO:1903046 GO:1903047
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363310	XP_013447093.1	99.482	386	0	1	1	384	1	386	0.0	800

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363310	sp\|Q39024\|MPK4_ARATH	79.784	371	75	0	9	379	2	372	0.0	641

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363310	A0A072U5I3	99.482	386	0	1	1	384	1	386	0.0	800

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa1363310	0.893959	3.865802e-75	-8.615850e-47
Msa0000800	Msa1363310	-0.817843	2.672698e-52	-8.615850e-47
Msa0001040	Msa1363310	0.812094	5.039486e-51	-8.615850e-47
Msa0001510	Msa1363310	0.809202	2.125693e-50	-8.615850e-47
Msa0002110	Msa1363310	0.903715	2.605557e-79	-8.615850e-47
Msa0002690	Msa1363310	0.870532	1.359573e-66	-8.615850e-47
Msa0002700	Msa1363310	0.873103	1.904753e-67	-8.615850e-47
Msa0003340	Msa1363310	0.846057	2.758987e-59	-8.615850e-47
Msa0003450	Msa1363310	0.812012	5.251411e-51	-8.615850e-47
Msa0004180	Msa1363310	0.859671	3.520221e-63	-8.615850e-47

Showing 1 to 10 of 1,928 entries

Previous1 2 3 4 5…193Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363310	MtrunA17_Chr8g0387401	99.482	386	0	1	1	384	1	386	0.0	800
Msa1363310	MtrunA17_Chr5g0397261	83.149	362	61	0	23	384	14	375	0.0	642
Msa1363310	MtrunA17_Chr7g0248461	80.163	368	73	0	14	381	2	369	0.0	639
Msa1363310	MtrunA17_Chr8g0348481	80.220	364	72	0	18	381	5	368	0.0	639
Msa1363310	MtrunA17_Chr4g0030231	76.836	354	82	0	24	377	14	367	0.0	578
Msa1363310	MtrunA17_Chr4g0045841	68.883	376	116	1	5	380	10	384	0.0	563
Msa1363310	MtrunA17_Chr4g0030151	64.674	368	130	0	13	380	2	369	0.0	529
Msa1363310	MtrunA17_Chr3g0141871	57.550	351	145	4	31	380	15	362	1.01e-147	422
Msa1363310	MtrunA17_Chr8g0378831	55.271	351	153	4	31	380	15	362	1.56e-139	402
Msa1363310	MtrunA17_Chr3g0102571	45.592	397	155	7	36	378	19	408	5.39e-119	351

Showing 1 to 10 of 433 entries

Previous1 2 3 4 5…44Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1363310	AT4G01370.1	79.784	371	75	0	9	379	2	372	641
Msa1363310	AT1G01560.2	80.055	361	72	0	19	379	9	369	616
Msa1363310	AT4G11330.1	76.359	368	87	0	14	381	7	374	606
Msa1363310	AT2G46070.3	76.536	358	84	0	23	380	48	405	590
Msa1363310	AT2G46070.1	76.536	358	84	0	23	380	14	371	589
Msa1363310	AT1G07880.2	72.727	352	96	0	26	377	9	360	555
Msa1363310	AT1G01560.3	77.946	331	68	3	19	344	9	339	530
Msa1363310	AT2G43790.1	65.789	380	129	1	1	380	14	392	530
Msa1363310	AT3G45640.1	64.903	359	126	0	21	379	9	367	515
Msa1363310	AT2G46070.2	77.097	310	71	0	23	332	14	323	513

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 304 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCTGTTGGAAGAGG+AGG	0.561022	tig0018036:+132492	Msa1363320:CDS
AAAAGGGTTCTTACTCATGG+TGG	0.629306	tig0018036:-136693	Msa1363310:CDS
AAACCATGAAATGGGCATTT+TGG	0.233607	tig0018036:+132553	Msa1363320:CDS
AAAGCAATCACAGCGCTGGT+TGG	0.571934	tig0018036:-132387	Msa1363310:three_prime_UTR
AAAGTTTAAAGATAATTATC+GGG	0.501670	tig0018036:+133528	None:intergenic
AAATATGATTTGTGGTTGGG+TGG	0.560229	tig0018036:+130839	Msa1363320:five_prime_UTR
AAATCAAAAGAGAAAGGCCT+AGG	0.513586	tig0018036:+133950	None:intergenic
AACAATTGAGGAGCAATTCC+GGG	0.412046	tig0018036:+134657	None:intergenic
AACATGATATGAAAGAGATT+AGG	0.523913	tig0018036:+137512	None:intergenic
AACCATTGGATTAGCAAAGA+AGG	0.502657	tig0018036:+132743	Msa1363320:CDS

Showing 1 to 10 of 304 entries

Previous1 2 3 4 5…31Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGCATATGAAATGAAACAAG+TGG	+	tig0018036:130660-130679	None:intergenic	30.0%
ATGGAACATGGTTAACTTAT+AGG	-	tig0018036:130695-130714	Msa1363310:three_prime_UTR	30.0%
CTTAAGTGTTTGAACCATTA+TGG	-	tig0018036:130763-130782	Msa1363310:three_prime_UTR	30.0%
TTCTTGGAACAATGTATTGT+TGG	+	tig0018036:131044-131063	Msa1363320:exon	30.0%
ATACATTGTTCCAAGAACAA+AGG	-	tig0018036:131047-131066	Msa1363310:three_prime_UTR	30.0%
AGAGATGAACACTTACATTT+GGG	+	tig0018036:131779-131798	Msa1363320:CDS	30.0%
AAGAGATGAACACTTACATT+TGG	+	tig0018036:131780-131799	Msa1363320:CDS	30.0%
ATTAATTAACGTGGCAATAG+TGG	-	tig0018036:131877-131896	Msa1363310:three_prime_UTR	30.0%
TAAATCCGACCATTGTAAAA+TGG	+	tig0018036:131903-131922	Msa1363320:CDS	30.0%
AATTTAGCTGTATACACTCA+TGG	+	tig0018036:132027-132046	Msa1363320:intron	30.0%

Showing 1 to 10 of 430 entries

Previous1 2 3 4 5…43Next

Chromosome	Type	Strat	End	Strand	Name
tig0018036	gene	130556	137541	130556	ID=Msa1363310;Name=Msa1363310
tig0018036	mRNA	130556	137541	130556	ID=Msa1363310-mRNA-1;Parent=Msa1363310;Name=Msa1363310-mRNA-1;_AED=0.05;_eAED=0.05;_QI=547\|1\|1\|1\|0.62\|0.44\|9\|3052\|384
tig0018036	exon	130556	131386	130556	ID=Msa1363310-mRNA-1:exon:13520;Parent=Msa1363310-mRNA-1
tig0018036	exon	131499	132098	131499	ID=Msa1363310-mRNA-1:exon:13519;Parent=Msa1363310-mRNA-1
tig0018036	exon	132241	134037	132241	ID=Msa1363310-mRNA-1:exon:13518;Parent=Msa1363310-mRNA-1
tig0018036	exon	134130	134313	134130	ID=Msa1363310-mRNA-1:exon:13517;Parent=Msa1363310-mRNA-1
tig0018036	exon	134538	134870	134538	ID=Msa1363310-mRNA-1:exon:13516;Parent=Msa1363310-mRNA-1
tig0018036	exon	135342	135479	135342	ID=Msa1363310-mRNA-1:exon:13515;Parent=Msa1363310-mRNA-1
tig0018036	exon	136315	136444	136315	ID=Msa1363310-mRNA-1:exon:13514;Parent=Msa1363310-mRNA-1
tig0018036	exon	136591	136818	136591	ID=Msa1363310-mRNA-1:exon:13513;Parent=Msa1363310-mRNA-1
tig0018036	exon	137029	137541	137029	ID=Msa1363310-mRNA-1:exon:13512;Parent=Msa1363310-mRNA-1
tig0018036	five_prime_UTR	137029	137541	137029	ID=Msa1363310-mRNA-1:five_prime_utr;Parent=Msa1363310-mRNA-1
tig0018036	five_prime_UTR	136785	136818	136785	ID=Msa1363310-mRNA-1:five_prime_utr;Parent=Msa1363310-mRNA-1
tig0018036	CDS	136591	136784	136591	ID=Msa1363310-mRNA-1:cds;Parent=Msa1363310-mRNA-1
tig0018036	CDS	136315	136444	136315	ID=Msa1363310-mRNA-1:cds;Parent=Msa1363310-mRNA-1
tig0018036	CDS	135342	135479	135342	ID=Msa1363310-mRNA-1:cds;Parent=Msa1363310-mRNA-1
tig0018036	CDS	134538	134870	134538	ID=Msa1363310-mRNA-1:cds;Parent=Msa1363310-mRNA-1
tig0018036	CDS	134130	134313	134130	ID=Msa1363310-mRNA-1:cds;Parent=Msa1363310-mRNA-1
tig0018036	CDS	133862	134037	133862	ID=Msa1363310-mRNA-1:cds;Parent=Msa1363310-mRNA-1
tig0018036	three_prime_UTR	132241	133861	132241	ID=Msa1363310-mRNA-1:three_prime_utr;Parent=Msa1363310-mRNA-1
tig0018036	three_prime_UTR	131499	132098	131499	ID=Msa1363310-mRNA-1:three_prime_utr;Parent=Msa1363310-mRNA-1
tig0018036	three_prime_UTR	130556	131386	130556	ID=Msa1363310-mRNA-1:three_prime_utr;Parent=Msa1363310-mRNA-1

Gene Sequence

>Msa1363310

ATGGCCACAAAAGAGTCAAGCTCTTCTGCTGCTGCTGCTGCTGCTTCAGCTTCAGGGGACACTAAAATCAAAAGGGTTCTTACTCATGGTGGTAAATATGCACACTACAATGTGTATGGAAACTTGTTTGAGGTGTCTTCTAAGTATGTGCCACCCATTCGCCCTATTGGTAGAGGCGCTTATGGTATCGTTTGTGCTGCTGTTAATTCTGATACACATGAACAAGTTGCCATCAAGAAGATTGGTAATGCATTTGACAATATAATTGATGCTAAAAGGACTTTGAGAGAAATCAAGCTCCTTCGTCACATGGATCACCCAAATATCATTGCCATCAAGGATATCATACGACCCCCGAAAAAGGAGGCATTTAATGATGTATACATTGTTTATGAATTGATGGACACTGATCTCCATCATATAATTCATTCTGACCAACCTCTTCGTGAAGAACATTGTCAGTACTTCTTATATCAGCTGTTACGTGGGTTGAAATATGTGCACTCAGCTAATGTTTTGCACCGTGATCTTAAGCCAAGTAATTTACTAGTCAATGCAAACTGTGACCTTAAAATTGGTGACTTCGGTTTGGCAAGGACAACATCCGAAACAGATTTCATGACTGAGTATGTGGTCACAAGATGGTACCGAGCCCCGGAATTGCTCCTCAATTGTTCTGAGTACACTTCTGCAATTGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAGCCCTTGTTTCCTGGCAAAGACTATGTTCATCAACTAAGGCTTATCACAGAGTTAATAGGTTCACCTGATGATGCGAGCCTTGGATTTCTCCGAAGTGACAATGCTAGAAGATATTTTAGACAGTTTCAACAGTACCGGAAGCAAAAATTCTCGTCCAGGTTCCCAAACATGTTACCTGAGGCACTTGATCTGTTAGAAAAGATGCTTATCTTTGATCCAAACAAACGCATTACAGTTGATGAGGCACTGTGTCACCCATATCTTTCCTCACTTCACAACACCAATGAGGAGCCAGTTTGTCCTAGGCCTTTCTCTTTTGATTTTGATCAACCTACATGCACTGAAGACAATATCAAGGAGATCATTTGGAAGGAATCTGTGAAGTTCAATCCAGATCCACTTTGTCAGTAA

Protein sequence

>Msa1363310

MATKESSSSAAAAAASASGDTKIKRVLTHGGKYAHYNVYGNLFEVSSKYVPPIRPIGRGAYGIVCAAVNSDTHEQVAIKKIGNAFDNIIDAKRTLREIKLLRHMDHPNIIAIKDIIRPPKKEAFNDVYIVYELMDTDLHHIIHSDQPLREEHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLVNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCIFGEIMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARRYFRQFQQYRKQKFSSRFPNMLPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHNTNEEPVCPRPFSFDFDQPTCTEDNIKEIIWKESVKFNPDPLCQ*