AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1160920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160920 MtrunA17_Chr7g0255781 98.163 490 9 0 1 490 1 490 0.0 993
Msa1160920 MtrunA17_Chr5g0441311 58.691 489 200 2 1 488 12 499 0.0 596
Msa1160920 MtrunA17_Chr3g0093711 59.221 488 193 3 1 487 1 483 0.0 589
Msa1160920 MtrunA17_Chr6g0482421 83.051 118 5 3 96 212 11 114 6.23e-54 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160920 AT2G40820.4 62.880 493 177 4 1 488 26 517 0.0 633
Msa1160920 AT2G40820.2 62.880 493 177 4 1 488 1 492 0.0 632
Msa1160920 AT2G40820.1 62.880 493 177 4 1 488 1 492 0.0 632
Msa1160920 AT2G40820.3 64.000 475 167 3 17 488 31 504 0.0 626
Msa1160920 AT3G56480.1 62.805 492 177 5 1 488 1 490 0.0 613
Msa1160920 AT2G26770.2 59.714 489 195 2 1 488 1 488 0.0 605
Msa1160920 AT2G26770.3 59.714 489 195 2 1 488 1 488 0.0 605
Msa1160920 AT2G26770.1 59.714 489 195 2 1 488 1 488 0.0 605
Msa1160920 AT2G40820.5 63.969 383 134 3 109 488 1 382 2.67e-178 505

Find 106 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATCTTGGTTTCAATTTC+AGG 0.115704 7_4:-51062787 None:intergenic
TAAGTTCTTGTCAAATTTAC+TGG 0.236091 7_4:-51063007 None:intergenic
GCTAAGAGAGGTTCCATCTT+TGG 0.264435 7_4:+51063306 Msa1160920:CDS
TCCACATGGCTTCCGAGTCC+TGG 0.274289 7_4:-51065754 None:intergenic
CACAAATAATCTTGCTTAGT+TGG 0.292327 7_4:+51061326 Msa1160920:five_prime_UTR
AACTGCTTCCATTGGCATCT+TGG 0.307156 7_4:-51062800 None:intergenic
ACGCAGCGAAGGCACTATTT+TGG 0.312084 7_4:+51066287 Msa1160920:CDS
CTTGTTCTGCTCTGACAAAT+TGG 0.324613 7_4:-51062962 None:intergenic
AATATGAACTCCGTGCTCTA+AGG 0.326569 7_4:+51064655 Msa1160920:CDS
GTTAGATGGTTCTGAAGCTT+TGG 0.333501 7_4:+51064871 Msa1160920:CDS
GGAAGCAGTTCCGCCTGTTT+CGG 0.352408 7_4:+51062813 Msa1160920:CDS
TCTCATTCATATAAGTTAGA+TGG 0.363370 7_4:+51064857 Msa1160920:CDS
AGAGCCTGCTGAGGATAATC+AGG 0.371170 7_4:+51062903 Msa1160920:CDS
TGCTCTAGCACTCTCGATTT+CGG 0.373790 7_4:-51063951 None:intergenic
AAAATAGTACCTGCATTGTT+GGG 0.381442 7_4:-51066149 None:intergenic
AGGAGCATATATTGATTTGT+TGG 0.381922 7_4:-51065549 None:intergenic
GAACCTGTGGTTTAGAAGCT+TGG 0.386227 7_4:-51064021 None:intergenic
AGCTGGAGGGAAGTTATTTC+AGG 0.386626 7_4:+51064983 Msa1160920:CDS
TTAGATGGTTCTGAAGCTTT+GGG 0.388489 7_4:+51064872 Msa1160920:CDS
CTTTATTTCTTCCCGTAAAA+CGG 0.394161 7_4:-51063381 None:intergenic
TAAAATAGTACCTGCATTGT+TGG 0.394534 7_4:-51066150 None:intergenic
AAGCTCACATCGGCCGAAAC+AGG 0.395391 7_4:-51062826 None:intergenic
AGGAATTAATGTACCTTGCT+TGG 0.396020 7_4:-51064320 None:intergenic
CTCCTGATCCCCTTGATGTT+GGG 0.406838 7_4:+51065567 Msa1160920:CDS
GCAATCAAGAGCATGTTTCC+TGG 0.407678 7_4:-51066383 None:intergenic
TGCTACTACACTAGATCATC+TGG 0.411513 7_4:-51066538 None:intergenic
TTCAATTCAGCTTCAGAAAG+AGG 0.415823 7_4:+51064704 Msa1160920:CDS
AACCTGTGGTTTAGAAGCTT+GGG 0.442649 7_4:-51064020 None:intergenic
GGAATTGCATAAGCTGTGTT+TGG 0.445864 7_4:+51061347 Msa1160920:five_prime_UTR
CCACATGGCTTCCGAGTCCT+GGG 0.446769 7_4:-51065753 None:intergenic
TCAGCCCCTAGTTTATACTT+TGG 0.447271 7_4:-51062865 None:intergenic
TTTGACAGGTTGTGCTTGCT+GGG 0.448744 7_4:+51066515 Msa1160920:intron
TCGATAACATCTTTCAAAGA+AGG 0.451784 7_4:-51062928 None:intergenic
AGAGCAGTGGTGCTGAGAAT+TGG 0.452907 7_4:+51063968 Msa1160920:CDS
GAATGAGGATAAAGCTATGT+AGG 0.453334 7_4:+51066094 Msa1160920:CDS
TGAAGAATGACAACAAGAAT+AGG 0.455621 7_4:-51061267 None:intergenic
TGTGGCGAATGCTATCTCTA+TGG 0.459226 7_4:+51063408 Msa1160920:CDS
TCTTACTGTCAGGATGTGGA+TGG 0.459399 7_4:+51064248 Msa1160920:intron
CTCCCAACATCAAGGGGATC+AGG 0.463688 7_4:-51065569 None:intergenic
TTCTACTCATTCATTTAATG+TGG 0.471514 7_4:+51066068 Msa1160920:CDS
GCTCCTGATCCCCTTGATGT+TGG 0.472236 7_4:+51065566 Msa1160920:CDS
CTGTCAGGATGTGGATGGGC+TGG 0.474973 7_4:+51064253 Msa1160920:intron
TTCTGAAGATGCTAAGAAGT+TGG 0.479065 7_4:+51063901 Msa1160920:CDS
AATGAGGATAAAGCTATGTA+GGG 0.479361 7_4:+51066095 Msa1160920:CDS
CATTTAATGTGGGGAGAATG+AGG 0.487584 7_4:+51066079 Msa1160920:CDS
TCTATCTTTCTCTGATTCAA+AGG 0.489736 7_4:-51066341 None:intergenic
AGAACATGCCCCTCCAAAGA+TGG 0.496492 7_4:-51063319 None:intergenic
TCTACTCATTCATTTAATGT+GGG 0.499771 7_4:+51066069 Msa1160920:CDS
GCATACATTAAAGTCGGTGT+TGG 0.508023 7_4:-51065794 None:intergenic
AAGAGAGGTTCCATCTTTGG+AGG 0.508874 7_4:+51063309 Msa1160920:CDS
TCTTGTCAAATTTACTGGCA+AGG 0.508976 7_4:-51063002 None:intergenic
TACCCAAGCTTCTAAACCAC+AGG 0.513181 7_4:+51064018 Msa1160920:CDS
GGACCCTGATTATCCTCAGC+AGG 0.515411 7_4:-51062907 None:intergenic
ACAACTAATCCAATTCAAAC+CGG 0.523218 7_4:+51065638 Msa1160920:CDS
GCTTGTCATCTGAAGGCAGC+TGG 0.524926 7_4:+51064966 Msa1160920:CDS
TGTGTAACAGTCCCAGGACT+CGG 0.527899 7_4:+51065742 Msa1160920:intron
GGATAAAGCTATGTAGGGGT+TGG 0.530530 7_4:+51066100 Msa1160920:CDS
CTTACTGTCAGGATGTGGAT+GGG 0.531742 7_4:+51064249 Msa1160920:intron
TTTCAAAATGTTCATTTCAG+TGG 0.532345 7_4:+51064939 Msa1160920:CDS
GTAACATTCTCCCAACATCA+AGG 0.542030 7_4:-51065577 None:intergenic
AGCACGGAGTTCATATTCCA+TGG 0.542354 7_4:-51064649 None:intergenic
ATATGAACTCCGTGCTCTAA+GGG 0.544878 7_4:+51064656 Msa1160920:CDS
ACAATTTCAGGTTATGGCCA+TGG 0.550932 7_4:+51064632 Msa1160920:intron
CTACTCATTCATTTAATGTG+GGG 0.553606 7_4:+51066070 Msa1160920:CDS
GATTTACTCCCCAACAATGC+AGG 0.553965 7_4:+51066140 Msa1160920:CDS
TAACATTCTCCCAACATCAA+GGG 0.556328 7_4:-51065576 None:intergenic
GATGCATTAGAATATTTGAA+AGG 0.556679 7_4:+51063358 Msa1160920:CDS
ATGTTGCGATTATGATCGCC+AGG 0.557650 7_4:+51066365 Msa1160920:CDS
ACAGGCGGAACTGCTTCCAT+TGG 0.561023 7_4:-51062808 None:intergenic
GTTAAGTTGACTCAGAATGA+AGG 0.563615 7_4:+51063712 Msa1160920:CDS
GAATTTGATCCCTTAGAGCA+CGG 0.571579 7_4:-51064665 None:intergenic
AGCTGCTAAGCTGTCTAATG+AGG 0.574964 7_4:+51063035 Msa1160920:CDS
GAGAATTGGAGAGGCACTTG+AGG 0.575034 7_4:+51063982 Msa1160920:CDS
TTGCACGAATGAAGTGCCAC+AGG 0.576560 7_4:+51064916 Msa1160920:CDS
AACAATGAGCAAGTGGGACA+AGG 0.579888 7_4:+51064826 Msa1160920:CDS
TGGATAGCATACATTAAAGT+CGG 0.581778 7_4:-51065800 None:intergenic
TGTGGCACTTCATTCGTGCA+AGG 0.583050 7_4:-51064914 None:intergenic
TGGTATCGCTTGTCATCTGA+AGG 0.583579 7_4:+51064959 Msa1160920:CDS
GGCAGCTAACAATGAGCAAG+TGG 0.583821 7_4:+51064819 Msa1160920:intron
GGGAAGAAATAAAGAGGATG+TGG 0.585429 7_4:+51063390 Msa1160920:CDS
AGAGAGGTTCCATCTTTGGA+GGG 0.586150 7_4:+51063310 Msa1160920:CDS
AATTGAAACCAAGATGCCAA+TGG 0.586655 7_4:+51062792 Msa1160920:CDS
TGTGGATGGGCTGGTAGAAG+AGG 0.590186 7_4:+51064262 Msa1160920:CDS
TGTCATCTGAAGGCAGCTGG+AGG 0.592112 7_4:+51064969 Msa1160920:CDS
GTCATCTGAAGGCAGCTGGA+GGG 0.595538 7_4:+51064970 Msa1160920:CDS
AAATAGTACCTGCATTGTTG+GGG 0.601497 7_4:-51066148 None:intergenic
CAAGTGGACATTGTCTCCGA+TGG 0.603830 7_4:+51065599 Msa1160920:CDS
TTCATTTAATCTAAGCTATG+CGG 0.605424 7_4:+51066244 Msa1160920:intron
TTCGGAGAAGTGCCTCCACA+TGG 0.605645 7_4:-51065768 None:intergenic
TGATGTCGGTAACGCAGCGA+AGG 0.615698 7_4:+51066276 Msa1160920:CDS
AACATTCTCCCAACATCAAG+GGG 0.616945 7_4:-51065575 None:intergenic
TGCGGAGTCAGAAGTGATGT+CGG 0.621220 7_4:+51066262 Msa1160920:CDS
AGGACTCGGAAGCCATGTGG+AGG 0.624909 7_4:+51065756 Msa1160920:CDS
CCCAGGACTCGGAAGCCATG+TGG 0.630430 7_4:+51065753 Msa1160920:CDS
ATGAGGATAAAGCTATGTAG+GGG 0.641370 7_4:+51066096 Msa1160920:CDS
CTCACATCGGCCGAAACAGG+CGG 0.643932 7_4:-51062823 None:intergenic
ATTGCTGCATCAGCCAAGCA+AGG 0.646063 7_4:+51064307 Msa1160920:CDS
GAGAGGTTCCATCTTTGGAG+GGG 0.650717 7_4:+51063311 Msa1160920:CDS
GCTGGTAGAAGAGGTTCAAG+AGG 0.656039 7_4:+51064271 Msa1160920:CDS
ATTAGAAATAAAGCTCACAT+CGG 0.661484 7_4:-51062836 None:intergenic
GAGCCTGCTGAGGATAATCA+GGG 0.663281 7_4:+51062904 Msa1160920:CDS
AATCGAGAGTGCTAGAGCAG+TGG 0.666858 7_4:+51063955 Msa1160920:CDS
TGTTGGGAGAATGTTACAAG+TGG 0.671295 7_4:+51065583 Msa1160920:CDS
AGTGGTGCTGAGAATTGGAG+AGG 0.675606 7_4:+51063973 Msa1160920:CDS
GCAGCTAACAATGAGCAAGT+GGG 0.683458 7_4:+51064820 Msa1160920:intron
AATTCAGGCAAAGCTAAGAG+AGG 0.697316 7_4:+51063294 Msa1160920:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAACTAGTAATTAAT+TGG + chr7_4:51061567-51061586 Msa1160920:intron 10.0%
!!! TGATAAATTGATAATTATTT+TGG + chr7_4:51061954-51061973 Msa1160920:intron 10.0%
!!! TTTTTTATCAAACTATATAA+AGG + chr7_4:51062230-51062249 Msa1160920:intron 10.0%
!!! GATTAATATATTTTTAAGTA+TGG - chr7_4:51063673-51063692 None:intergenic 10.0%
!!! TTTTCAAAAGGTTAAAAAAA+GGG - chr7_4:51061184-51061203 None:intergenic 15.0%
!!! TTTTTCAAAAGGTTAAAAAA+AGG - chr7_4:51061185-51061204 None:intergenic 15.0%
!! AAATTGTAGAGAAATAAAAT+TGG - chr7_4:51061491-51061510 None:intergenic 15.0%
!! TTTGAGAAATTGTTAATTAA+TGG + chr7_4:51061648-51061667 Msa1160920:intron 15.0%
!!! TTGAATGAATTTTCTATTAT+AGG - chr7_4:51063086-51063105 None:intergenic 15.0%
!! CTTAAAAATATATTAATCAC+AGG + chr7_4:51063675-51063694 Msa1160920:intron 15.0%
!! AAATGGAGTATAATTAAATT+AGG - chr7_4:51064343-51064362 None:intergenic 15.0%
!!! TTAATTTATTTTCTAGCATA+TGG + chr7_4:51065016-51065035 Msa1160920:intron 15.0%
!! GTTGAATTAAATGAATTAAT+AGG - chr7_4:51065441-51065460 None:intergenic 15.0%
!!! TTTTATTTTTGATTTTTGAC+AGG + chr7_4:51066501-51066520 Msa1160920:intron 15.0%
!!! TATAGCTTTACTTTTTCAAA+AGG - chr7_4:51061196-51061215 None:intergenic 20.0%
!! AATGATAAAGAGAAAAAAAC+AGG - chr7_4:51061301-51061320 None:intergenic 20.0%
!!! ATTGGAGTTGATAATATTTT+TGG + chr7_4:51061585-51061604 Msa1160920:intron 20.0%
!!! TGATAATATTTTTGGAATGT+AGG + chr7_4:51061593-51061612 Msa1160920:intron 20.0%
!! TATATAAAGGTTAATCGAAA+TGG + chr7_4:51062243-51062262 Msa1160920:intron 20.0%
!! TTAAGAGAATGAAAATTTGA+AGG - chr7_4:51062366-51062385 None:intergenic 20.0%
!! TTAAGATACATCAAATACAT+TGG - chr7_4:51062569-51062588 None:intergenic 20.0%
!! AAAAAGAAACTCATGAAATA+TGG - chr7_4:51063207-51063226 None:intergenic 20.0%
!!! TTTTTTATTTTGCACTTCAA+TGG + chr7_4:51063222-51063241 Msa1160920:intron 20.0%
!!! TATTTCTATTTCATTTTCTG+TGG + chr7_4:51063492-51063511 Msa1160920:intron 20.0%
!! AAAAATATATTAATCACAGG+TGG + chr7_4:51063678-51063697 Msa1160920:intron 20.0%
!!! TTATTTTAGTTCTTAGTGTT+TGG - chr7_4:51064114-51064133 None:intergenic 20.0%
!! TCATTGTCATTATCATAAAA+TGG - chr7_4:51064360-51064379 None:intergenic 20.0%
!! TATTGTGGAAGAAAAAAAAA+AGG - chr7_4:51064440-51064459 None:intergenic 20.0%
!! ATATCCATATTGTATATGAA+TGG + chr7_4:51064457-51064476 Msa1160920:intron 20.0%
!! TATCCATATTGTATATGAAT+GGG + chr7_4:51064458-51064477 Msa1160920:intron 20.0%
!!! GAGAATTTTATAACAATTTC+AGG + chr7_4:51064620-51064639 Msa1160920:intron 20.0%
!!! TTTATAACAATTTCAGGTTA+TGG + chr7_4:51064626-51064645 Msa1160920:intron 20.0%
!! TAACAAACTTGAATAATGTA+AGG - chr7_4:51065142-51065161 None:intergenic 20.0%
!!! TTTTTGCTTTTATAAGCATT+TGG + chr7_4:51065361-51065380 Msa1160920:intron 20.0%
!!! ACGATAATTTTTCTTATGTA+TGG + chr7_4:51065473-51065492 Msa1160920:intron 20.0%
!!! TTAGTTTTTGTTTTTGGTTT+CGG + chr7_4:51065661-51065680 Msa1160920:intron 20.0%
! ACAAATCAGATAAAATGTCA+TGG - chr7_4:51061881-51061900 None:intergenic 25.0%
! TTATATGAATGCTATTGACA+TGG + chr7_4:51061977-51061996 Msa1160920:intron 25.0%
!!! CTTGATCTATCTTTTTCATT+AGG + chr7_4:51062008-51062027 Msa1160920:intron 25.0%
! TGATTTCAATCACAATCATT+AGG - chr7_4:51062053-51062072 None:intergenic 25.0%
!! AACTCTAATCTTTTGTTCTT+TGG + chr7_4:51062315-51062334 Msa1160920:intron 25.0%
! TTAGGTGTTAAACAGTAAAA+GGG - chr7_4:51062477-51062496 None:intergenic 25.0%
! ATTAGGTGTTAAACAGTAAA+AGG - chr7_4:51062478-51062497 None:intergenic 25.0%
! CTAAATAGTATAGCTTCATT+TGG - chr7_4:51062665-51062684 None:intergenic 25.0%
! ATTAGAAATAAAGCTCACAT+CGG - chr7_4:51062839-51062858 None:intergenic 25.0%
!! AGTTTTCCAAAGTATAAACT+AGG + chr7_4:51062859-51062878 Msa1160920:CDS 25.0%
!! GTTTTCCAAAGTATAAACTA+GGG + chr7_4:51062860-51062879 Msa1160920:CDS 25.0%
!! TTTTCCAAAGTATAAACTAG+GGG + chr7_4:51062861-51062880 Msa1160920:CDS 25.0%
! TAAGTTCTTGTCAAATTTAC+TGG - chr7_4:51063010-51063029 None:intergenic 25.0%
! CCAGAAGCAAATATAAATTA+TGG - chr7_4:51063063-51063082 None:intergenic 25.0%
! CCATAATTTATATTTGCTTC+TGG + chr7_4:51063060-51063079 Msa1160920:intron 25.0%
!!! GTTTATTTTTCATGGAATTC+AGG + chr7_4:51063279-51063298 Msa1160920:intron 25.0%
! GATGCATTAGAATATTTGAA+AGG + chr7_4:51063358-51063377 Msa1160920:CDS 25.0%
! AAGTAATGTACTTAAGATCA+TGG - chr7_4:51063453-51063472 None:intergenic 25.0%
! ACTTTGTTCAATGTTTGAAA+TGG + chr7_4:51063469-51063488 Msa1160920:intron 25.0%
!! AGTAACATTGATTGAATAAC+AGG - chr7_4:51063650-51063669 None:intergenic 25.0%
!! AAAAAGTCATAACGTTTTGA+TGG - chr7_4:51063842-51063861 None:intergenic 25.0%
!!! AAAACGTTATGACTTTTTTC+TGG + chr7_4:51063844-51063863 Msa1160920:intron 25.0%
! CATATACAATATGGATATTG+TGG - chr7_4:51064455-51064474 None:intergenic 25.0%
! ATCCATATTGTATATGAATG+GGG + chr7_4:51064459-51064478 Msa1160920:intron 25.0%
! ACAAAATTGTATGAGATACT+TGG - chr7_4:51064522-51064541 None:intergenic 25.0%
! TAGTATACACTCTATGTTAT+GGG - chr7_4:51064561-51064580 None:intergenic 25.0%
! ATAGTATACACTCTATGTTA+TGG - chr7_4:51064562-51064581 None:intergenic 25.0%
! GGATCAAATTCAAGAAAAAT+CGG + chr7_4:51064677-51064696 Msa1160920:CDS 25.0%
! CATGAAGAAAATGAAGTTAT+TGG - chr7_4:51064800-51064819 None:intergenic 25.0%
!! CAATAACTTCATTTTCTTCA+TGG + chr7_4:51064798-51064817 Msa1160920:intron 25.0%
! TCTCATTCATATAAGTTAGA+TGG + chr7_4:51064857-51064876 Msa1160920:CDS 25.0%
! TTTCAAAATGTTCATTTCAG+TGG + chr7_4:51064939-51064958 Msa1160920:CDS 25.0%
! AAAGGTCTTAGTATTTGTAA+TGG + chr7_4:51065048-51065067 Msa1160920:intron 25.0%
!! GGTATTCAGATCTTATATTT+TGG - chr7_4:51065099-51065118 None:intergenic 25.0%
! TGATACTTGTAAGTTGTATA+TGG - chr7_4:51065221-51065240 None:intergenic 25.0%
! ATTTAAAGAATAGGTCACTT+GGG - chr7_4:51065337-51065356 None:intergenic 25.0%
! AATTTAAAGAATAGGTCACT+TGG - chr7_4:51065338-51065357 None:intergenic 25.0%
!! CTTATTTGCCTTTATTTATC+AGG + chr7_4:51065524-51065543 Msa1160920:intron 25.0%
! AACCAAAAACAAAAACTAAC+CGG - chr7_4:51065660-51065679 None:intergenic 25.0%
! CATCTAAAAGTAGAAAACAA+AGG + chr7_4:51065700-51065719 Msa1160920:intron 25.0%
! ATTATTGAATCTAAAGAGAG+TGG - chr7_4:51065823-51065842 None:intergenic 25.0%
!! ATAATTTCGAAAGTCTTTTG+CGG - chr7_4:51065859-51065878 None:intergenic 25.0%
! TAAAGAGAAACATTTGCTTT+GGG + chr7_4:51065946-51065965 Msa1160920:intron 25.0%
! ATTCTTACGAAGTTTGTATT+TGG + chr7_4:51065994-51066013 Msa1160920:intron 25.0%
! TTCTACTCATTCATTTAATG+TGG + chr7_4:51066068-51066087 Msa1160920:CDS 25.0%
! TCTACTCATTCATTTAATGT+GGG + chr7_4:51066069-51066088 Msa1160920:CDS 25.0%
! CATAGGAAAAAAAGAATACA+TGG - chr7_4:51066181-51066200 None:intergenic 25.0%
!!! CATGTATTCTTTTTTTCCTA+TGG + chr7_4:51066179-51066198 Msa1160920:intron 25.0%
! AAATAAAGAACTCAAACCAT+AGG - chr7_4:51066198-51066217 None:intergenic 25.0%
!! TATGGTTTGAGTTCTTTATT+TGG + chr7_4:51066197-51066216 Msa1160920:intron 25.0%
! TTCATTTAATCTAAGCTATG+CGG + chr7_4:51066244-51066263 Msa1160920:intron 25.0%
!! GCATACTTATTCTTTCATTT+TGG + chr7_4:51066450-51066469 Msa1160920:intron 25.0%
! TGTGATTTCATCATTGTAAT+TGG + chr7_4:51066650-51066669 Msa1160920:intron 25.0%
! GTGATTTCATCATTGTAATT+GGG + chr7_4:51066651-51066670 Msa1160920:intron 25.0%
!!! TAATTAGGTTGCATTGTTTT+AGG + chr7_4:51066681-51066700 Msa1160920:intron 25.0%
! GTCTCTTAACAAAATTTACA+CGG + chr7_4:51066840-51066859 Msa1160920:intron 25.0%
TGAAGAATGACAACAAGAAT+AGG - chr7_4:51061270-51061289 None:intergenic 30.0%
CACAAATAATCTTGCTTAGT+TGG + chr7_4:51061326-51061345 Msa1160920:five_prime_UTR 30.0%
GATATATATTGTACTAGACG+TGG - chr7_4:51061677-51061696 None:intergenic 30.0%
GAGAGATGATCTAAGAAAAT+TGG - chr7_4:51061723-51061742 None:intergenic 30.0%
AAAATTGTAGACAATGACGT+AGG - chr7_4:51061792-51061811 None:intergenic 30.0%
!! TTTTGTTGTGTAGATCTCTA+TGG + chr7_4:51061816-51061835 Msa1160920:intron 30.0%
!! CTATCTTTTTCATTAGGAGT+AGG + chr7_4:51062014-51062033 Msa1160920:intron 30.0%
CATAAGTTGTAAAGGACAAA+GGG - chr7_4:51062131-51062150 None:intergenic 30.0%
! AGTTTAAAGCAACTATTGTC+AGG - chr7_4:51062299-51062318 None:intergenic 30.0%
AGAGAATGAAAATTTGAAGG+TGG - chr7_4:51062363-51062382 None:intergenic 30.0%
TCTCTTAAACAGAACTTGAA+TGG + chr7_4:51062378-51062397 Msa1160920:intron 30.0%
AAATTCATCACCATGCAATT+AGG - chr7_4:51062495-51062514 None:intergenic 30.0%
! TAATTGCATGGTGATGAATT+TGG + chr7_4:51062494-51062513 Msa1160920:intron 30.0%
! TACATTTTGCATACATGACA+TGG + chr7_4:51062597-51062616 Msa1160920:intron 30.0%
! AGAGCTTTTAATGTTCTATC+TGG + chr7_4:51062634-51062653 Msa1160920:intron 30.0%
TCGATAACATCTTTCAAAGA+AGG - chr7_4:51062931-51062950 None:intergenic 30.0%
!!! TGTTTTTTTCCCTCAACTTA+TGG + chr7_4:51063250-51063269 Msa1160920:intron 30.0%
!! ATATTTGAAAGGCCGTTTTA+CGG + chr7_4:51063369-51063388 Msa1160920:CDS 30.0%
! CTTTATTTCTTCCCGTAAAA+CGG - chr7_4:51063384-51063403 None:intergenic 30.0%
! TTTTACGGGAAGAAATAAAG+AGG + chr7_4:51063384-51063403 Msa1160920:CDS 30.0%
! ATTTCATTTTCTGTGGTAAC+TGG + chr7_4:51063499-51063518 Msa1160920:intron 30.0%
! TTTCATTTTCTGTGGTAACT+GGG + chr7_4:51063500-51063519 Msa1160920:intron 30.0%
TTGATATAAGCTCCAAAAGA+GGG - chr7_4:51063565-51063584 None:intergenic 30.0%
ATTGATATAAGCTCCAAAAG+AGG - chr7_4:51063566-51063585 None:intergenic 30.0%
! GCTTTTGAATTTTCTCAAAC+AGG + chr7_4:51063768-51063787 Msa1160920:CDS 30.0%
! TTTTGTGTTTTCTTACTGTC+AGG + chr7_4:51064238-51064257 Msa1160920:intron 30.0%
TTCCCCATTCATATACAATA+TGG - chr7_4:51064464-51064483 None:intergenic 30.0%
!! GCAAACTTTCACTATTTTGA+AGG - chr7_4:51064593-51064612 None:intergenic 30.0%
!!! AATGAACATTTTGAAACCTG+TGG - chr7_4:51064935-51064954 None:intergenic 30.0%
AGCATATGGTGAAAATTCAA+AGG + chr7_4:51065030-51065049 Msa1160920:intron 30.0%
!!! TTATATTTTGGCTAGATTCC+AGG - chr7_4:51065087-51065106 None:intergenic 30.0%
CTTTACTGCTATCTAATTTG+AGG + chr7_4:51065241-51065260 Msa1160920:intron 30.0%
CAAATATGCAACCATCAAAT+TGG - chr7_4:51065501-51065520 None:intergenic 30.0%
!! AGGAGCATATATTGATTTGT+TGG - chr7_4:51065552-51065571 None:intergenic 30.0%
!!! TAGTGTAAGTTTTTTGCCAT+CGG - chr7_4:51065618-51065637 None:intergenic 30.0%
ACAACTAATCCAATTCAAAC+CGG + chr7_4:51065638-51065657 Msa1160920:CDS 30.0%
!! AAAAACTAACCGGTTTGAAT+TGG - chr7_4:51065650-51065669 None:intergenic 30.0%
!!! AACCGGTTAGTTTTTGTTTT+TGG + chr7_4:51065655-51065674 Msa1160920:intron 30.0%
TGGATAGCATACATTAAAGT+CGG - chr7_4:51065803-51065822 None:intergenic 30.0%
AGATAAGTAGAAGAACATCA+AGG - chr7_4:51065927-51065946 None:intergenic 30.0%
CTAAAGAGAAACATTTGCTT+TGG + chr7_4:51065945-51065964 Msa1160920:intron 30.0%
!!! TTGGGAAATGGAGATTTTTT+TGG + chr7_4:51065964-51065983 Msa1160920:intron 30.0%
!! GTTTGTATTTGGTGTTATAC+AGG + chr7_4:51066005-51066024 Msa1160920:intron 30.0%
CTACTCATTCATTTAATGTG+GGG + chr7_4:51066070-51066089 Msa1160920:CDS 30.0%
AATGAGGATAAAGCTATGTA+GGG + chr7_4:51066095-51066114 Msa1160920:CDS 30.0%
AAAATAGTACCTGCATTGTT+GGG - chr7_4:51066152-51066171 None:intergenic 30.0%
TAAAATAGTACCTGCATTGT+TGG - chr7_4:51066153-51066172 None:intergenic 30.0%
!!! TATTTTGGCAAGCAAGAAAA+GGG + chr7_4:51066302-51066321 Msa1160920:CDS 30.0%
TCTATCTTTCTCTGATTCAA+AGG - chr7_4:51066344-51066363 None:intergenic 30.0%
TTCTCGTACATTATTGTCTA+CGG + chr7_4:51066419-51066438 Msa1160920:intron 30.0%
TAATTGGGTTTCCACTAATT+AGG + chr7_4:51066666-51066685 Msa1160920:intron 30.0%
AAACAATGCAACCTAATTAG+TGG - chr7_4:51066680-51066699 None:intergenic 30.0%
!! GAGTTTGTTACAACATGATT+AGG - chr7_4:51066724-51066743 None:intergenic 30.0%
TGCAACAAAAATGGAAATGC+AGG - chr7_4:51061417-51061436 None:intergenic 35.0%
GTAGTTGCATGCAACAAAAA+TGG - chr7_4:51061426-51061445 None:intergenic 35.0%
! ACAATTTGCTTCAAGTGCAA+TGG + chr7_4:51061504-51061523 Msa1160920:intron 35.0%
! TGTTTGTTTGTTTGTTGAGC+TGG + chr7_4:51061850-51061869 Msa1160920:intron 35.0%
CCATAAGTTGTAAAGGACAA+AGG - chr7_4:51062132-51062151 None:intergenic 35.0%
CCTTTGTCCTTTACAACTTA+TGG + chr7_4:51062129-51062148 Msa1160920:intron 35.0%
!! ATTGTCAGGTTGGTATAAGA+TGG - chr7_4:51062285-51062304 None:intergenic 35.0%
TAAAGCAACTATTGTCAGGT+TGG - chr7_4:51062295-51062314 None:intergenic 35.0%
CAGCGTTAGATCATGATTAA+CGG + chr7_4:51062410-51062429 Msa1160920:intron 35.0%
GCTAAATCATCAACAACAGT+TGG + chr7_4:51062432-51062451 Msa1160920:intron 35.0%
CTGTTTAACACCTAATTGCA+TGG + chr7_4:51062482-51062501 Msa1160920:intron 35.0%
! TTTTGCATACATGACATGGA+AGG + chr7_4:51062601-51062620 Msa1160920:intron 35.0%
TTTGCATACATGACATGGAA+GGG + chr7_4:51062602-51062621 Msa1160920:intron 35.0%
TCCACGATATTCTTAACTGA+AGG + chr7_4:51062699-51062718 Msa1160920:intron 35.0%
ACCTTCAGTTAAGAATATCG+TGG - chr7_4:51062703-51062722 None:intergenic 35.0%
AATTGAAACCAAGATGCCAA+TGG + chr7_4:51062792-51062811 Msa1160920:CDS 35.0%
TCTTGTCAAATTTACTGGCA+AGG - chr7_4:51063005-51063024 None:intergenic 35.0%
!! GGTGATGCGTTTATTTTTCA+TGG + chr7_4:51063271-51063290 Msa1160920:intron 35.0%
!! TATTTGAAAGGCCGTTTTAC+GGG + chr7_4:51063370-51063389 Msa1160920:CDS 35.0%
AGAAACTCAAAAAGTCTGGA+AGG - chr7_4:51063537-51063556 None:intergenic 35.0%
!!! TCCAGACTTTTTGAGTTTCT+CGG + chr7_4:51063537-51063556 Msa1160920:intron 35.0%
!! GTTAAGTTGACTCAGAATGA+AGG + chr7_4:51063712-51063731 Msa1160920:CDS 35.0%
TGATTCCATCTTTGTTCTAC+AGG + chr7_4:51063877-51063896 Msa1160920:intron 35.0%
! TTCTGAAGATGCTAAGAAGT+TGG + chr7_4:51063901-51063920 Msa1160920:CDS 35.0%
AATTGTGCAATCAAACAGCA+TGG - chr7_4:51064051-51064070 None:intergenic 35.0%
GCTGTTTGATTGCACAATTA+TGG + chr7_4:51064052-51064071 Msa1160920:intron 35.0%
CACAAAAAATGCATGCTTGA+AGG - chr7_4:51064225-51064244 None:intergenic 35.0%
AGGAATTAATGTACCTTGCT+TGG - chr7_4:51064323-51064342 None:intergenic 35.0%
TTCAATTCAGCTTCAGAAAG+AGG + chr7_4:51064704-51064723 Msa1160920:CDS 35.0%
TTTCTATTAGACTCTCTCGA+CGG - chr7_4:51064763-51064782 None:intergenic 35.0%
!! TTAGATGGTTCTGAAGCTTT+GGG + chr7_4:51064872-51064891 Msa1160920:CDS 35.0%
! GTTCTGAATGATGTGAATTC+AGG - chr7_4:51065120-51065139 None:intergenic 35.0%
! GATGTTTCCTTGATAATCCT+CGG + chr7_4:51065263-51065282 Msa1160920:intron 35.0%
TATTGCGTTTCCACATTGTA+TGG - chr7_4:51065311-51065330 None:intergenic 35.0%
!! TGACAAAGAAAAAGCATCAG+AGG - chr7_4:51065409-51065428 None:intergenic 35.0%
TATGTATGGCTCCAATTTGA+TGG + chr7_4:51065487-51065506 Msa1160920:intron 35.0%
TGTTGGCACCTGATAAATAA+AGG - chr7_4:51065535-51065554 None:intergenic 35.0%
TAACATTCTCCCAACATCAA+GGG - chr7_4:51065579-51065598 None:intergenic 35.0%
!!! TAAAGTCGGTGTTGGATTTT+CGG - chr7_4:51065789-51065808 None:intergenic 35.0%
CTTTCGAAATTATCACCTCA+AGG + chr7_4:51065866-51065885 Msa1160920:intron 35.0%
TATTCATATGATTCGCCTTG+AGG - chr7_4:51065884-51065903 None:intergenic 35.0%
!! GAAACATTTGCTTTGGGAAA+TGG + chr7_4:51065952-51065971 Msa1160920:intron 35.0%
GAATGAGGATAAAGCTATGT+AGG + chr7_4:51066094-51066113 Msa1160920:CDS 35.0%
ATGAGGATAAAGCTATGTAG+GGG + chr7_4:51066096-51066115 Msa1160920:CDS 35.0%
AAATAGTACCTGCATTGTTG+GGG - chr7_4:51066151-51066170 None:intergenic 35.0%
! GGTTTGAGTTCTTTATTTGG+CGG + chr7_4:51066200-51066219 Msa1160920:intron 35.0%
!!! CTATTTTGGCAAGCAAGAAA+AGG + chr7_4:51066301-51066320 Msa1160920:CDS 35.0%
!! CTGATCAAACTCACTTTTGT+TGG - chr7_4:51066584-51066603 None:intergenic 35.0%
AGTGAGTTTGATCAGATTCT+TGG + chr7_4:51066589-51066608 Msa1160920:intron 35.0%
!! GTGCTTGTCTTGTTTAAGAA+AGG + chr7_4:51066627-51066646 Msa1160920:intron 35.0%
ATTCGTTCATTTGTTCACTG+TGG + chr7_4:51066756-51066775 Msa1160920:intron 35.0%
!!! ACTGCGAAATGTCCTTTTTT+CGG + chr7_4:51066869-51066888 Msa1160920:intron 35.0%
!!! GTCCTTTTTTCGGTTTATCA+CGG + chr7_4:51066879-51066898 Msa1160920:intron 35.0%
GGAATTGCATAAGCTGTGTT+TGG + chr7_4:51061347-51061366 Msa1160920:five_prime_UTR 40.0%
AACTTGAGATCACAAGCAAG+AGG - chr7_4:51061699-51061718 None:intergenic 40.0%
TAACCAGTATGCTATTGCTG+TGG - chr7_4:51062077-51062096 None:intergenic 40.0%
TTGGTGAGCATACATGACTT+AGG + chr7_4:51062451-51062470 Msa1160920:intron 40.0%
GTGTACTACACAACAGGAAA+GGG - chr7_4:51062525-51062544 None:intergenic 40.0%
TGTGTACTACACAACAGGAA+AGG - chr7_4:51062526-51062545 None:intergenic 40.0%
TTCCTGTTGTGTAGTACACA+TGG + chr7_4:51062526-51062545 Msa1160920:intron 40.0%
TACCATGTGTACTACACAAC+AGG - chr7_4:51062531-51062550 None:intergenic 40.0%
TGTGTAGTACACATGGTAGT+TGG + chr7_4:51062533-51062552 Msa1160920:intron 40.0%
GGCATCTTGGTTTCAATTTC+AGG - chr7_4:51062790-51062809 None:intergenic 40.0%
TCAGCCCCTAGTTTATACTT+TGG - chr7_4:51062868-51062887 None:intergenic 40.0%
CTTGTTCTGCTCTGACAAAT+TGG - chr7_4:51062965-51062984 None:intergenic 40.0%
! AACGCATCACCATAAGTTGA+GGG - chr7_4:51063262-51063281 None:intergenic 40.0%
AAACGCATCACCATAAGTTG+AGG - chr7_4:51063263-51063282 None:intergenic 40.0%
AATTCAGGCAAAGCTAAGAG+AGG + chr7_4:51063294-51063313 Msa1160920:intron 40.0%
GGGAAGAAATAAAGAGGATG+TGG + chr7_4:51063390-51063409 Msa1160920:CDS 40.0%
AGAAGCCTGTAGAACAAAGA+TGG - chr7_4:51063885-51063904 None:intergenic 40.0%
AACCTGTGGTTTAGAAGCTT+GGG - chr7_4:51064023-51064042 None:intergenic 40.0%
! GTTTTCTTACTGTCAGGATG+TGG + chr7_4:51064244-51064263 Msa1160920:intron 40.0%
!! ACAATTTCAGGTTATGGCCA+TGG + chr7_4:51064632-51064651 Msa1160920:intron 40.0%
AATATGAACTCCGTGCTCTA+AGG + chr7_4:51064655-51064674 Msa1160920:CDS 40.0%
ATATGAACTCCGTGCTCTAA+GGG + chr7_4:51064656-51064675 Msa1160920:CDS 40.0%
GAATTTGATCCCTTAGAGCA+CGG - chr7_4:51064668-51064687 None:intergenic 40.0%
!! GTTAGATGGTTCTGAAGCTT+TGG + chr7_4:51064871-51064890 Msa1160920:CDS 40.0%
AATGGTCTTCGTATTTGACC+TGG + chr7_4:51065066-51065085 Msa1160920:intron 40.0%
GGACTATGCAGATTTCTACT+TGG - chr7_4:51065290-51065309 None:intergenic 40.0%
TCTGCATAGTCCATACAATG+TGG + chr7_4:51065298-51065317 Msa1160920:intron 40.0%
!! AAAAAGCATCAGAGGTATCG+AGG - chr7_4:51065401-51065420 None:intergenic 40.0%
AACATTCTCCCAACATCAAG+GGG - chr7_4:51065578-51065597 None:intergenic 40.0%
GTAACATTCTCCCAACATCA+AGG - chr7_4:51065580-51065599 None:intergenic 40.0%
TGTTGGGAGAATGTTACAAG+TGG + chr7_4:51065583-51065602 Msa1160920:CDS 40.0%
GCATACATTAAAGTCGGTGT+TGG - chr7_4:51065797-51065816 None:intergenic 40.0%
CATTTAATGTGGGGAGAATG+AGG + chr7_4:51066079-51066098 Msa1160920:CDS 40.0%
TGCTACTACACTAGATCATC+TGG - chr7_4:51066541-51066560 None:intergenic 40.0%
CATATTCCTACTAGTTGTCG+CGG + chr7_4:51066787-51066806 Msa1160920:intron 40.0%
TTGTCGCGGTAGCTAAATTA+TGG + chr7_4:51066801-51066820 Msa1160920:intron 40.0%
TGCCGTGATAAACCGAAAAA+AGG - chr7_4:51066884-51066903 None:intergenic 40.0%
! ACTGCGTCATGTCTTTTCTT+CGG + chr7_4:51066908-51066927 Msa1160920:three_prime_UTR 40.0%
CAACCACAGCAATAGCATAC+TGG + chr7_4:51062071-51062090 Msa1160920:intron 45.0%
CGTGTCGCCATAAGTTGTAA+AGG - chr7_4:51062139-51062158 None:intergenic 45.0%
AACTGCTTCCATTGGCATCT+TGG - chr7_4:51062803-51062822 None:intergenic 45.0%
!!! AGTTTTTCAAGAGCCTGCTG+AGG + chr7_4:51062894-51062913 Msa1160920:CDS 45.0%
AGCTGCTAAGCTGTCTAATG+AGG + chr7_4:51063035-51063054 Msa1160920:CDS 45.0%
GCTAAGAGAGGTTCCATCTT+TGG + chr7_4:51063306-51063325 Msa1160920:CDS 45.0%
AAGAGAGGTTCCATCTTTGG+AGG + chr7_4:51063309-51063328 Msa1160920:CDS 45.0%
AGAGAGGTTCCATCTTTGGA+GGG + chr7_4:51063310-51063329 Msa1160920:CDS 45.0%
TGTGGCGAATGCTATCTCTA+TGG + chr7_4:51063408-51063427 Msa1160920:CDS 45.0%
GCCGAGAAACTCAAAAAGTC+TGG - chr7_4:51063541-51063560 None:intergenic 45.0%
TGCTCTAGCACTCTCGATTT+CGG - chr7_4:51063954-51063973 None:intergenic 45.0%
TACCCAAGCTTCTAAACCAC+AGG + chr7_4:51064018-51064037 Msa1160920:CDS 45.0%
GAACCTGTGGTTTAGAAGCT+TGG - chr7_4:51064024-51064043 None:intergenic 45.0%
TCTTACTGTCAGGATGTGGA+TGG + chr7_4:51064248-51064267 Msa1160920:intron 45.0%
CTTACTGTCAGGATGTGGAT+GGG + chr7_4:51064249-51064268 Msa1160920:intron 45.0%
AGCACGGAGTTCATATTCCA+TGG - chr7_4:51064652-51064671 None:intergenic 45.0%
GCAGCTAACAATGAGCAAGT+GGG + chr7_4:51064820-51064839 Msa1160920:intron 45.0%
AACAATGAGCAAGTGGGACA+AGG + chr7_4:51064826-51064845 Msa1160920:CDS 45.0%
TGGTATCGCTTGTCATCTGA+AGG + chr7_4:51064959-51064978 Msa1160920:CDS 45.0%
! AGCTGGAGGGAAGTTATTTC+AGG + chr7_4:51064983-51065002 Msa1160920:CDS 45.0%
ACTTGGACCGAGGATTATCA+AGG - chr7_4:51065273-51065292 None:intergenic 45.0%
GGGACTGTTACACACAAGAT+AGG - chr7_4:51065736-51065755 None:intergenic 45.0%
ATCTTGTGTGTAACAGTCCC+AGG + chr7_4:51065736-51065755 Msa1160920:intron 45.0%
GGATAAAGCTATGTAGGGGT+TGG + chr7_4:51066100-51066119 Msa1160920:CDS 45.0%
GATTTACTCCCCAACAATGC+AGG + chr7_4:51066140-51066159 Msa1160920:CDS 45.0%
ATGTTGCGATTATGATCGCC+AGG + chr7_4:51066365-51066384 Msa1160920:CDS 45.0%
! GCAATCAAGAGCATGTTTCC+TGG - chr7_4:51066386-51066405 None:intergenic 45.0%
! TTTTGACAGGTTGTGCTTGC+TGG + chr7_4:51066514-51066533 Msa1160920:intron 45.0%
TTTGACAGGTTGTGCTTGCT+GGG + chr7_4:51066515-51066534 Msa1160920:intron 45.0%
!! AAAAAATTAAAAATAGTAAA+AGG - chr7_4:51061139-51061158 None:intergenic 5.0%
!!! TTTATTTTTATTTTTATGTT+AGG + chr7_4:51061764-51061783 Msa1160920:intron 5.0%
!!! AAAAATTTAATTTAAAGAAT+AGG - chr7_4:51065346-51065365 None:intergenic 5.0%
AGAGCCTGCTGAGGATAATC+AGG + chr7_4:51062903-51062922 Msa1160920:CDS 50.0%
GAGCCTGCTGAGGATAATCA+GGG + chr7_4:51062904-51062923 Msa1160920:CDS 50.0%
! GAGAGGTTCCATCTTTGGAG+GGG + chr7_4:51063311-51063330 Msa1160920:CDS 50.0%
AGAACATGCCCCTCCAAAGA+TGG - chr7_4:51063322-51063341 None:intergenic 50.0%
! AGTTTCTCGGCTCCCTCTTT+TGG + chr7_4:51063550-51063569 Msa1160920:intron 50.0%
!! AATCGAGAGTGCTAGAGCAG+TGG + chr7_4:51063955-51063974 Msa1160920:CDS 50.0%
! AGAGCAGTGGTGCTGAGAAT+TGG + chr7_4:51063968-51063987 Msa1160920:CDS 50.0%
! AGTGGTGCTGAGAATTGGAG+AGG + chr7_4:51063973-51063992 Msa1160920:CDS 50.0%
!! GAGAATTGGAGAGGCACTTG+AGG + chr7_4:51063982-51064001 Msa1160920:CDS 50.0%
ACAGCATGGTGTAGAACCTG+TGG - chr7_4:51064037-51064056 None:intergenic 50.0%
GCTGGTAGAAGAGGTTCAAG+AGG + chr7_4:51064271-51064290 Msa1160920:CDS 50.0%
ATTGCTGCATCAGCCAAGCA+AGG + chr7_4:51064307-51064326 Msa1160920:CDS 50.0%
GGCAGCTAACAATGAGCAAG+TGG + chr7_4:51064819-51064838 Msa1160920:intron 50.0%
TGTGGCACTTCATTCGTGCA+AGG - chr7_4:51064917-51064936 None:intergenic 50.0%
! TTGCACGAATGAAGTGCCAC+AGG + chr7_4:51064916-51064935 Msa1160920:CDS 50.0%
GCAGATTTCTACTTGGACCG+AGG - chr7_4:51065283-51065302 None:intergenic 50.0%
CTCCTGATCCCCTTGATGTT+GGG + chr7_4:51065567-51065586 Msa1160920:CDS 50.0%
CAAGTGGACATTGTCTCCGA+TGG + chr7_4:51065599-51065618 Msa1160920:CDS 50.0%
TGTGTAACAGTCCCAGGACT+CGG + chr7_4:51065742-51065761 Msa1160920:intron 50.0%
TGCGGAGTCAGAAGTGATGT+CGG + chr7_4:51066262-51066281 Msa1160920:CDS 50.0%
!!! ACGCAGCGAAGGCACTATTT+TGG + chr7_4:51066287-51066306 Msa1160920:CDS 50.0%
TAGCTACCGCGACAACTAGT+AGG - chr7_4:51066796-51066815 None:intergenic 50.0%
ACAGGCGGAACTGCTTCCAT+TGG - chr7_4:51062811-51062830 None:intergenic 55.0%
GGAAGCAGTTCCGCCTGTTT+CGG + chr7_4:51062813-51062832 Msa1160920:CDS 55.0%
AAGCTCACATCGGCCGAAAC+AGG - chr7_4:51062829-51062848 None:intergenic 55.0%
GGACCCTGATTATCCTCAGC+AGG - chr7_4:51062910-51062929 None:intergenic 55.0%
!! TGTGGATGGGCTGGTAGAAG+AGG + chr7_4:51064262-51064281 Msa1160920:CDS 55.0%
GCTTGTCATCTGAAGGCAGC+TGG + chr7_4:51064966-51064985 Msa1160920:CDS 55.0%
TGTCATCTGAAGGCAGCTGG+AGG + chr7_4:51064969-51064988 Msa1160920:CDS 55.0%
GTCATCTGAAGGCAGCTGGA+GGG + chr7_4:51064970-51064989 Msa1160920:CDS 55.0%
GCTCCTGATCCCCTTGATGT+TGG + chr7_4:51065566-51065585 Msa1160920:CDS 55.0%
CTCCCAACATCAAGGGGATC+AGG - chr7_4:51065572-51065591 None:intergenic 55.0%
!! TTCGGAGAAGTGCCTCCACA+TGG - chr7_4:51065771-51065790 None:intergenic 55.0%
TGATGTCGGTAACGCAGCGA+AGG + chr7_4:51066276-51066295 Msa1160920:CDS 55.0%
CTCACATCGGCCGAAACAGG+CGG - chr7_4:51062826-51062845 None:intergenic 60.0%
CTGTCAGGATGTGGATGGGC+TGG + chr7_4:51064253-51064272 Msa1160920:intron 60.0%
CCACATGGCTTCCGAGTCCT+GGG - chr7_4:51065756-51065775 None:intergenic 60.0%
TCCACATGGCTTCCGAGTCC+TGG - chr7_4:51065757-51065776 None:intergenic 60.0%
AGGACTCGGAAGCCATGTGG+AGG + chr7_4:51065756-51065775 Msa1160920:CDS 60.0%
CCCAGGACTCGGAAGCCATG+TGG + chr7_4:51065753-51065772 Msa1160920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 51061124 51066963 51061124 ID=Msa1160920;Name=Msa1160920
chr7_4 mRNA 51061124 51066963 51061124 ID=Msa1160920-mRNA-1;Parent=Msa1160920;Name=Msa1160920-mRNA-1;_AED=0.14;_eAED=0.14;_QI=291|1|1|1|0.84|0.71|14|96|490
chr7_4 exon 51061124 51061394 51061124 ID=Msa1160920-mRNA-1:exon:14324;Parent=Msa1160920-mRNA-1
chr7_4 exon 51062752 51063056 51062752 ID=Msa1160920-mRNA-1:exon:14325;Parent=Msa1160920-mRNA-1
chr7_4 exon 51063301 51063429 51063301 ID=Msa1160920-mRNA-1:exon:14326;Parent=Msa1160920-mRNA-1
chr7_4 exon 51063697 51063789 51063697 ID=Msa1160920-mRNA-1:exon:14327;Parent=Msa1160920-mRNA-1
chr7_4 exon 51063899 51064039 51063899 ID=Msa1160920-mRNA-1:exon:14328;Parent=Msa1160920-mRNA-1
chr7_4 exon 51064260 51064328 51064260 ID=Msa1160920-mRNA-1:exon:14329;Parent=Msa1160920-mRNA-1
chr7_4 exon 51064642 51064725 51064642 ID=Msa1160920-mRNA-1:exon:14330;Parent=Msa1160920-mRNA-1
chr7_4 exon 51064824 51065004 51064824 ID=Msa1160920-mRNA-1:exon:14331;Parent=Msa1160920-mRNA-1
chr7_4 exon 51065546 51065659 51065546 ID=Msa1160920-mRNA-1:exon:14332;Parent=Msa1160920-mRNA-1
chr7_4 exon 51065752 51065810 51065752 ID=Msa1160920-mRNA-1:exon:14333;Parent=Msa1160920-mRNA-1
chr7_4 exon 51066027 51066161 51066027 ID=Msa1160920-mRNA-1:exon:14334;Parent=Msa1160920-mRNA-1
chr7_4 exon 51066259 51066408 51066259 ID=Msa1160920-mRNA-1:exon:14335;Parent=Msa1160920-mRNA-1
chr7_4 exon 51066523 51066589 51066523 ID=Msa1160920-mRNA-1:exon:14336;Parent=Msa1160920-mRNA-1
chr7_4 exon 51066902 51066963 51066902 ID=Msa1160920-mRNA-1:exon:14337;Parent=Msa1160920-mRNA-1
chr7_4 five_prime_UTR 51061124 51061394 51061124 ID=Msa1160920-mRNA-1:five_prime_utr;Parent=Msa1160920-mRNA-1
chr7_4 five_prime_UTR 51062752 51062771 51062752 ID=Msa1160920-mRNA-1:five_prime_utr;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51062772 51063056 51062772 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51063301 51063429 51063301 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51063697 51063789 51063697 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51063899 51064039 51063899 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51064260 51064328 51064260 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51064642 51064725 51064642 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51064824 51065004 51064824 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51065546 51065659 51065546 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51065752 51065810 51065752 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51066027 51066161 51066027 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51066259 51066408 51066259 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 CDS 51066523 51066555 51066523 ID=Msa1160920-mRNA-1:cds;Parent=Msa1160920-mRNA-1
chr7_4 three_prime_UTR 51066556 51066589 51066556 ID=Msa1160920-mRNA-1:three_prime_utr;Parent=Msa1160920-mRNA-1
chr7_4 three_prime_UTR 51066902 51066963 51066902 ID=Msa1160920-mRNA-1:three_prime_utr;Parent=Msa1160920-mRNA-1
Gene Sequence

>Msa1160920

ATGACAAAGATTAGTCCTGAAATTGAAACCAAGATGCCAATGGAAGCAGTTCCGCCTGTTTCGGCCGATGTGAGCTTTATTTCTAATAGTTTTCCAAAGTATAAACTAGGGGCTGATCATCAAGTTTTTCAAGAGCCTGCTGAGGATAATCAGGGTCCTTCTTTGAAAGATGTTATCGAACAAGAAGCTTCCAATTTGTCAGAGCAGAACAAGCGTATCTCAGTTCGTGACCTTGCCAGTAAATTTGACAAGAACTTATCAGCAGCTGCTAAGCTGTCTAATGAGGCAAAGCTAAGAGAGGTTCCATCTTTGGAGGGGCATGTTCTTTTGAAGAAGCTAAGAGATGCATTAGAATATTTGAAAGGCCGTTTTACGGGAAGAAATAAAGAGGATGTGGCGAATGCTATCTCTATGGTGGAAGCTTTAGCTGTTAAGTTGACTCAGAATGAAGGAGAACTGATTCAAGAGAAGTTTGAAGTGAAAAAGCTTTTGAATTTTCTCAAACAGGCTTCTGAAGATGCTAAGAAGTTGGTTAATCAAGAGAAGTCTTTTGCTTGTGCCGAAATCGAGAGTGCTAGAGCAGTGGTGCTGAGAATTGGAGAGGCACTTGAGGAACAAGAAAAAGTTACCCAAGCTTCTAAACCACAGGATGTGGATGGGCTGGTAGAAGAGGTTCAAGAGGCTAGAAGAATCAGATTGCTGCATCAGCCAAGCAAGGTTATGGCCATGGAATATGAACTCCGTGCTCTAAGGGATCAAATTCAAGAAAAATCGGTATTTTCAATTCAGCTTCAGAAAGAGCTAACAATGAGCAAGTGGGACAAGGAGAATAAATCTCATTCATATAAGTTAGATGGTTCTGAAGCTTTGGGTTCATATATGCAAGTCAAGCCTTGCACGAATGAAGTGCCACAGGTTTCAAAATGTTCATTTCAGTGGTATCGCTTGTCATCTGAAGGCAGCTGGAGGGAAGTTATTTCAGGTGCCAACAAATCAATATATGCTCCTGATCCCCTTGATGTTGGGAGAATGTTACAAGTGGACATTGTCTCCGATGGCAAAAAACTTACACTAACAACTAATCCAATTCAAACCGTCCCAGGACTCGGAAGCCATGTGGAGGCACTTCTCCGAAAATCCAACACCGACTTTAATGTAGTTATTTCTCAGATGAATGCAAAAGATCACTCATCACATTCTACTCATTCATTTAATGTGGGGAGAATGAGGATAAAGCTATGTAGGGGTTGGATCACAAAAGCTAGAGAGATTTACTCCCCAACAATGCAGCTATGCGGAGTCAGAAGTGATGTCGGTAACGCAGCGAAGGCACTATTTTGGCAAGCAAGAAAAGGGCTATCGTTTGTGTTAACCTTTGAATCAGAGAAAGATAGAAATGTTGCGATTATGATCGCCAGGAAACATGCTCTTGATTGCAATGTTGTGCTTGCTGGGCCAGATGATCTAGTGTAG

Protein sequence

>Msa1160920

MTKISPEIETKMPMEAVPPVSADVSFISNSFPKYKLGADHQVFQEPAEDNQGPSLKDVIEQEASNLSEQNKRISVRDLASKFDKNLSAAAKLSNEAKLREVPSLEGHVLLKKLRDALEYLKGRFTGRNKEDVANAISMVEALAVKLTQNEGELIQEKFEVKKLLNFLKQASEDAKKLVNQEKSFACAEIESARAVVLRIGEALEEQEKVTQASKPQDVDGLVEEVQEARRIRLLHQPSKVMAMEYELRALRDQIQEKSVFSIQLQKELTMSKWDKENKSHSYKLDGSEALGSYMQVKPCTNEVPQVSKCSFQWYRLSSEGSWREVISGANKSIYAPDPLDVGRMLQVDIVSDGKKLTLTTNPIQTVPGLGSHVEALLRKSNTDFNVVISQMNAKDHSSHSTHSFNVGRMRIKLCRGWITKAREIYSPTMQLCGVRSDVGNAAKALFWQARKGLSFVLTFESEKDRNVAIMIARKHALDCNVVLAGPDDLV*