AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0307270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307270 MtrunA17_Chr7g0255781 98.367 490 8 0 1 490 1 490 0.0 996
Msa0307270 MtrunA17_Chr5g0441311 58.896 489 199 2 1 488 12 499 0.0 598
Msa0307270 MtrunA17_Chr3g0093711 59.221 488 193 3 1 487 1 483 0.0 589
Msa0307270 MtrunA17_Chr6g0482421 83.051 118 5 3 96 212 11 114 6.78e-54 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0307270 AT2G40820.4 63.083 493 176 4 1 488 26 517 0.0 635
Msa0307270 AT2G40820.2 63.083 493 176 4 1 488 1 492 0.0 635
Msa0307270 AT2G40820.1 63.083 493 176 4 1 488 1 492 0.0 635
Msa0307270 AT2G40820.3 64.211 475 166 3 17 488 31 504 0.0 628
Msa0307270 AT3G56480.1 63.008 492 176 5 1 488 1 490 0.0 615
Msa0307270 AT2G26770.2 59.918 489 194 2 1 488 1 488 0.0 607
Msa0307270 AT2G26770.3 59.918 489 194 2 1 488 1 488 0.0 607
Msa0307270 AT2G26770.1 59.918 489 194 2 1 488 1 488 0.0 607
Msa0307270 AT2G40820.5 64.230 383 133 3 109 488 1 382 2.97e-179 508

Find 106 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATCTTGGTTTCAATTTC+AGG 0.115704 2_4:+144095 None:intergenic
TAAGTTCTTGTCAAATTTAC+TGG 0.236091 2_4:+143875 None:intergenic
GCTAAGAGAGGTTCCATCTT+TGG 0.264435 2_4:-143575 Msa0307270:CDS
TCCACATGGCTTCCGAGTCC+TGG 0.274289 2_4:+141125 None:intergenic
CACAAATAATCTTGCTTAGT+TGG 0.278613 2_4:-145570 Msa0307270:five_prime_UTR
AACTGCTTCCATTGGCATCT+TGG 0.307156 2_4:+144082 None:intergenic
ACGCAGCGAAGGCACTATTT+TGG 0.312084 2_4:-140592 Msa0307270:CDS
CTTGTTCTGCTCTGACAAAT+TGG 0.324613 2_4:+143920 None:intergenic
AATATGAACTCCGTGCTCTA+AGG 0.326569 2_4:-142223 Msa0307270:CDS
GTTAGATGGTTCTGAAGCTT+TGG 0.333501 2_4:-142007 Msa0307270:CDS
GGAAGCAGTTCCGCCTGTTT+CGG 0.352408 2_4:-144069 Msa0307270:CDS
TCTCATTCATATAAGTTAGA+TGG 0.363370 2_4:-142021 Msa0307270:CDS
AGAGCCTGCTGAGGATAATC+AGG 0.371170 2_4:-143979 Msa0307270:CDS
TGCTCTAGCACTCTCGATTT+CGG 0.373790 2_4:+142927 None:intergenic
AAAATAGTACCTGCATTGTT+GGG 0.381442 2_4:+140730 None:intergenic
AGGAGCATATATTGATTTGT+TGG 0.381922 2_4:+141330 None:intergenic
GAACCTGTGGTTTAGAAGCT+TGG 0.386227 2_4:+142857 None:intergenic
AGCTGGAGGGAAGTTATTTC+AGG 0.386626 2_4:-141895 Msa0307270:intron
TTAGATGGTTCTGAAGCTTT+GGG 0.388489 2_4:-142006 Msa0307270:CDS
CTTTATTTCTTCCCGTAAAA+CGG 0.394161 2_4:+143500 None:intergenic
TAAAATAGTACCTGCATTGT+TGG 0.394534 2_4:+140729 None:intergenic
AAGCTCACATCGGCCGAAAC+AGG 0.395391 2_4:+144056 None:intergenic
CTCCTGATCCCCTTGATGTT+GGG 0.406838 2_4:-141312 Msa0307270:CDS
GCAATCAAGAGCATGTTTCC+TGG 0.407678 2_4:+140496 None:intergenic
TGCTACTACACTAGATCATC+TGG 0.411513 2_4:+140341 None:intergenic
TTCAATTCAGCTTCAGAAAG+AGG 0.415823 2_4:-142174 Msa0307270:intron
AGGCATTAATGTACCTTGCT+TGG 0.420644 2_4:+142558 None:intergenic
GTAGTTATTTCTCAGATGAA+TGG 0.432162 2_4:-140852 Msa0307270:CDS
AACCTGTGGTTTAGAAGCTT+GGG 0.442649 2_4:+142858 None:intergenic
GGAACTGCATAAGCTGTGTT+TGG 0.442994 2_4:-145549 Msa0307270:five_prime_UTR
CCACATGGCTTCCGAGTCCT+GGG 0.446769 2_4:+141126 None:intergenic
TCAGCCCCTAGTTTATACTT+TGG 0.447271 2_4:+144017 None:intergenic
TTTGACAGGTTGTGCTTGCT+GGG 0.448744 2_4:-140364 Msa0307270:intron
TCGATAACATCTTTCAAAGA+AGG 0.451784 2_4:+143954 None:intergenic
AGAGCAGTGGTGCTGAGAAT+TGG 0.452907 2_4:-142910 Msa0307270:CDS
GAATGAGGATAAAGCTATGT+AGG 0.453334 2_4:-140785 Msa0307270:CDS
TGTGGCGAATGCTATCTCTA+TGG 0.459226 2_4:-143473 Msa0307270:intron
CTCCCAACATCAAGGGGATC+AGG 0.463688 2_4:+141310 None:intergenic
TTCTACTCATTCATTTAATG+TGG 0.471514 2_4:-140811 Msa0307270:CDS
GCTCCTGATCCCCTTGATGT+TGG 0.472236 2_4:-141313 Msa0307270:CDS
TTCTGAAGATGCTAAGAAGT+TGG 0.479065 2_4:-142977 Msa0307270:CDS
AATGAGGATAAAGCTATGTA+GGG 0.479361 2_4:-140784 Msa0307270:CDS
CATTTAATGTGGGGAGAATG+AGG 0.487584 2_4:-140800 Msa0307270:CDS
TCTATCTTTCTCTGATTCAA+AGG 0.489736 2_4:+140538 None:intergenic
AGAACATGCCCCTCCAAAGA+TGG 0.496492 2_4:+143562 None:intergenic
TCTACTCATTCATTTAATGT+GGG 0.499771 2_4:-140810 Msa0307270:CDS
AAGAGAGGTTCCATCTTTGG+AGG 0.508874 2_4:-143572 Msa0307270:CDS
TCTTGTCAAATTTACTGGCA+AGG 0.508976 2_4:+143880 None:intergenic
TACCCAAGCTTCTAAACCAC+AGG 0.513181 2_4:-142860 Msa0307270:intron
GGACCCTGATTATCCTCAGC+AGG 0.515411 2_4:+143975 None:intergenic
ACATACATTAAAGTCGGTGT+TGG 0.521000 2_4:+141085 None:intergenic
ACAACTAATCCAATTCAAAC+CGG 0.523218 2_4:-141241 Msa0307270:intron
GCTTGTCATCTGAAGGCAGC+TGG 0.524926 2_4:-141912 Msa0307270:CDS
TCTTACTGTCAGGATGTGGA+TGG 0.524962 2_4:-142630 Msa0307270:intron
TGTGTAACAGTCCCAGGACT+CGG 0.527899 2_4:-141137 Msa0307270:intron
GGATAAAGCTATGTAGGGGT+TGG 0.530530 2_4:-140779 Msa0307270:CDS
CTGTCAGGATGTGGATGGAC+TGG 0.531598 2_4:-142625 Msa0307270:intron
TTTCAAAATGTTCATTTCAG+TGG 0.532345 2_4:-141939 Msa0307270:CDS
GTAACATTCTCCCAACATCA+AGG 0.542030 2_4:+141302 None:intergenic
AGCACGGAGTTCATATTCCA+TGG 0.542354 2_4:+142229 None:intergenic
ATATGAACTCCGTGCTCTAA+GGG 0.544878 2_4:-142222 Msa0307270:CDS
ACAATTTCAGGTTATGGCCA+TGG 0.550932 2_4:-142246 Msa0307270:intron
CTACTCATTCATTTAATGTG+GGG 0.553606 2_4:-140809 Msa0307270:CDS
GATTTACTCCCCAACAATGC+AGG 0.553965 2_4:-140739 Msa0307270:intron
TAACATTCTCCCAACATCAA+GGG 0.556328 2_4:+141303 None:intergenic
GATGCATTAGAATATTTGAA+AGG 0.556679 2_4:-143523 Msa0307270:CDS
ATGTTGCGATTATGATCGCC+AGG 0.557650 2_4:-140514 Msa0307270:CDS
ACAGGCGGAACTGCTTCCAT+TGG 0.561023 2_4:+144074 None:intergenic
GTTAAGTTGACTCAGAATGA+AGG 0.563615 2_4:-143166 Msa0307270:CDS
GAATTTGATCCCTTAGAGCA+CGG 0.571579 2_4:+142213 None:intergenic
AGCTGCTAAGCTGTCTAATG+AGG 0.574964 2_4:-143847 Msa0307270:intron
GAGAATTGGAGAGGCACTTG+AGG 0.575034 2_4:-142896 Msa0307270:CDS
TTGCACGAATGAAGTGCCAC+AGG 0.576560 2_4:-141962 Msa0307270:CDS
AACAATGAGCAAGTGGGACA+AGG 0.579888 2_4:-142052 Msa0307270:CDS
TGTGGCACTTCATTCGTGCA+AGG 0.583050 2_4:+141964 None:intergenic
TGGTATCGCTTGTCATCTGA+AGG 0.583579 2_4:-141919 Msa0307270:CDS
GGCAGCTAACAATGAGCAAG+TGG 0.583821 2_4:-142059 Msa0307270:intron
TGGATAACATACATTAAAGT+CGG 0.584179 2_4:+141079 None:intergenic
GGGAAGAAATAAAGAGGATG+TGG 0.585429 2_4:-143491 Msa0307270:CDS
AGAGAGGTTCCATCTTTGGA+GGG 0.586150 2_4:-143571 Msa0307270:CDS
AATTGAAACCAAGATGCCAA+TGG 0.586655 2_4:-144090 Msa0307270:CDS
TGTCATCTGAAGGCAGCTGG+AGG 0.592112 2_4:-141909 Msa0307270:CDS
GTCATCTGAAGGCAGCTGGA+GGG 0.595538 2_4:-141908 Msa0307270:CDS
AAATAGTACCTGCATTGTTG+GGG 0.601497 2_4:+140731 None:intergenic
CAAGTGGACATTGTCTCCGA+TGG 0.603830 2_4:-141280 Msa0307270:CDS
TTCATTTAATCTAAGCTATG+CGG 0.605424 2_4:-140635 Msa0307270:intron
TTCGGAGAAGTGCCTCCACA+TGG 0.605645 2_4:+141111 None:intergenic
TGATGTCGGTAACGCAGCGA+AGG 0.615698 2_4:-140603 Msa0307270:CDS
AACATTCTCCCAACATCAAG+GGG 0.616945 2_4:+141304 None:intergenic
TGCGGAGTCAGAAGTGATGT+CGG 0.621220 2_4:-140617 Msa0307270:CDS
AGGACTCGGAAGCCATGTGG+AGG 0.624909 2_4:-141123 Msa0307270:CDS
TGTGGATGGACTGGTAGAAG+AGG 0.629824 2_4:-142616 Msa0307270:CDS
CCCAGGACTCGGAAGCCATG+TGG 0.630430 2_4:-141126 Msa0307270:CDS
ATGAGGATAAAGCTATGTAG+GGG 0.641370 2_4:-140783 Msa0307270:CDS
CTCACATCGGCCGAAACAGG+CGG 0.643932 2_4:+144059 None:intergenic
ATTGCTGCATCAGCCAAGCA+AGG 0.646063 2_4:-142571 Msa0307270:intron
GAGAGGTTCCATCTTTGGAG+GGG 0.650717 2_4:-143570 Msa0307270:CDS
ACTGGTAGAAGAGGTTCAAG+AGG 0.656039 2_4:-142607 Msa0307270:CDS
ATTAGAAATAAAGCTCACAT+CGG 0.661484 2_4:+144046 None:intergenic
GAGCCTGCTGAGGATAATCA+GGG 0.663281 2_4:-143978 Msa0307270:CDS
AATCGAGAGTGCTAGAGCAG+TGG 0.666858 2_4:-142923 Msa0307270:CDS
TGTTGGGAGAATGTTACAAG+TGG 0.671295 2_4:-141296 Msa0307270:CDS
AGTGGTGCTGAGAATTGGAG+AGG 0.675606 2_4:-142905 Msa0307270:CDS
GCAGCTAACAATGAGCAAGT+GGG 0.683458 2_4:-142058 Msa0307270:intron
ACCGAAGAAAAGACATGACG+CGG 0.695424 2_4:+139972 None:intergenic
AATTCAGGCAAAGCTAAGAG+AGG 0.697316 2_4:-143587 Msa0307270:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAACTAGTAATTAAT+TGG - chr2_4:140390-140409 Msa0307270:intron 10.0%
!!! TGATAAATTGATAATTATTT+TGG - chr2_4:140789-140808 Msa0307270:CDS 10.0%
!!! TTTTTTATCAAACTATATAA+AGG - chr2_4:141061-141080 Msa0307270:intron 10.0%
!!! GATTAATATATTTTTAAGTA+TGG + chr2_4:142508-142527 None:intergenic 10.0%
!! TTTGAGAAATTGTTAATTAA+TGG - chr2_4:140471-140490 Msa0307270:intron 15.0%
!! TTAAGAGAATGAAAATTTAA+AGG + chr2_4:141197-141216 None:intergenic 15.0%
!!! TTGAATGAATTTTCTATTAT+AGG + chr2_4:141917-141936 None:intergenic 15.0%
!! CTTAAAAATATATTAATCAC+AGG - chr2_4:142510-142529 Msa0307270:intron 15.0%
!! AAATGGAGTATAATTAAATT+AGG + chr2_4:143178-143197 None:intergenic 15.0%
!!! TTAATTTATTTTCTAGCATA+TGG - chr2_4:143851-143870 Msa0307270:CDS 15.0%
!!! TTTTATTTTTGATTTTTGAC+AGG - chr2_4:145335-145354 Msa0307270:intron 15.0%
!!! TATAGCTTTACTTTTTCAAA+AGG + chr2_4:140010-140029 None:intergenic 20.0%
!! AATGATAAAGAGAAAAAAAC+AGG + chr2_4:140118-140137 None:intergenic 20.0%
!!! ATTGGAGTTGATAATATTTT+TGG - chr2_4:140408-140427 Msa0307270:intron 20.0%
!!! TGATAATATTTTTGGAATGT+AGG - chr2_4:140416-140435 Msa0307270:intron 20.0%
!! TATATAAAGGTTAATCGAAA+TGG - chr2_4:141074-141093 Msa0307270:intron 20.0%
!! TTAAGATACATCAAATACAT+TGG + chr2_4:141400-141419 None:intergenic 20.0%
!! AAAAAGAAACTCATGAAATA+TGG + chr2_4:142039-142058 None:intergenic 20.0%
!!! TTTTTTATTTTGCACTTCAA+TGG - chr2_4:142054-142073 Msa0307270:CDS 20.0%
!!! TATTTCTATTTCATTTTCTG+TGG - chr2_4:142324-142343 Msa0307270:intron 20.0%
!! AAAAATATATTAATCACAGG+TGG - chr2_4:142513-142532 Msa0307270:intron 20.0%
!!! TTATTTTAGTTCTTAGTGTT+TGG + chr2_4:142949-142968 None:intergenic 20.0%
!! TCATTGTCATTATCATAAAA+TGG + chr2_4:143195-143214 None:intergenic 20.0%
!! TATCCATATTGTATATGAAT+GGG - chr2_4:143293-143312 Msa0307270:intron 20.0%
!!! GAGAATTTTATAACAATTTC+AGG - chr2_4:143455-143474 Msa0307270:intron 20.0%
!!! TTTATAACAATTTCAGGTTA+TGG - chr2_4:143461-143480 Msa0307270:intron 20.0%
!! TAACAAACTTGAATAATGTA+AGG + chr2_4:143977-143996 None:intergenic 20.0%
!!! TTTTTGCTTTTATAAGCATT+TGG - chr2_4:144196-144215 Msa0307270:intron 20.0%
!! GTTGAAGTAAATGAATTAAT+AGG + chr2_4:144275-144294 None:intergenic 20.0%
!!! TTAGTTTTTGTTTTTGGTTT+CGG - chr2_4:144495-144514 Msa0307270:intron 20.0%
! ACAAATCAGATAAAATGTCA+TGG + chr2_4:140716-140735 None:intergenic 25.0%
! TTATATGAATGCTATTGACA+TGG - chr2_4:140812-140831 Msa0307270:CDS 25.0%
!!! CTTGATCTATCTTTTTCATT+AGG - chr2_4:140843-140862 Msa0307270:CDS 25.0%
! TGATTTCAATCACAATCATT+AGG + chr2_4:140887-140906 None:intergenic 25.0%
!! AACTCTAATCTTTTGTTCTT+TGG - chr2_4:141146-141165 Msa0307270:intron 25.0%
! AGAGAATGAAAATTTAAAGG+TGG + chr2_4:141194-141213 None:intergenic 25.0%
! TTAGGTGTTAAACAGTAAAA+GGG + chr2_4:141308-141327 None:intergenic 25.0%
! ATTAGGTGTTAAACAGTAAA+AGG + chr2_4:141309-141328 None:intergenic 25.0%
! CTAAATAGTATAGCTTCATT+TGG + chr2_4:141496-141515 None:intergenic 25.0%
! ATTAGAAATAAAGCTCACAT+CGG + chr2_4:141670-141689 None:intergenic 25.0%
!! AGTTTTCCAAAGTATAAACT+AGG - chr2_4:141690-141709 Msa0307270:intron 25.0%
!! GTTTTCCAAAGTATAAACTA+GGG - chr2_4:141691-141710 Msa0307270:intron 25.0%
!! TTTTCCAAAGTATAAACTAG+GGG - chr2_4:141692-141711 Msa0307270:intron 25.0%
! TAAGTTCTTGTCAAATTTAC+TGG + chr2_4:141841-141860 None:intergenic 25.0%
! CCAGAAGCAAATATAAATTA+TGG + chr2_4:141894-141913 None:intergenic 25.0%
! CCATAATTTATATTTGCTTC+TGG - chr2_4:141891-141910 Msa0307270:intron 25.0%
!!! GTTTATTTTTCATGGAATTC+AGG - chr2_4:142111-142130 Msa0307270:intron 25.0%
! GATGCATTAGAATATTTGAA+AGG - chr2_4:142190-142209 Msa0307270:CDS 25.0%
! AAGTAATGTACTTAAGATCA+TGG + chr2_4:142285-142304 None:intergenic 25.0%
! ACTTTGTTCAATGTTTGAAA+TGG - chr2_4:142301-142320 Msa0307270:intron 25.0%
!! AGTAACATTGATTGAATAAC+AGG + chr2_4:142485-142504 None:intergenic 25.0%
!! AAAAAGTCATAACGTTTTGA+TGG + chr2_4:142677-142696 None:intergenic 25.0%
!!! AAAACGTTATGACTTTTTTC+TGG - chr2_4:142679-142698 Msa0307270:intron 25.0%
! TACTGTGGAAGAAAAAAAAA+AGG + chr2_4:143275-143294 None:intergenic 25.0%
! GTATCCATATTGTATATGAA+TGG - chr2_4:143292-143311 Msa0307270:intron 25.0%
! ATCCATATTGTATATGAATG+GGG - chr2_4:143294-143313 Msa0307270:intron 25.0%
! ACAAAATTGTATGAGATACT+TGG + chr2_4:143357-143376 None:intergenic 25.0%
! TAGTATACACTCTATGTTAT+GGG + chr2_4:143396-143415 None:intergenic 25.0%
! ATAGTATACACTCTATGTTA+TGG + chr2_4:143397-143416 None:intergenic 25.0%
! GGATCAAATTCAAGAAAAAT+CGG - chr2_4:143512-143531 Msa0307270:CDS 25.0%
! CATGAAGAAAATGAAGTTAT+TGG + chr2_4:143635-143654 None:intergenic 25.0%
!! CAATAACTTCATTTTCTTCA+TGG - chr2_4:143633-143652 Msa0307270:intron 25.0%
! TCTCATTCATATAAGTTAGA+TGG - chr2_4:143692-143711 Msa0307270:intron 25.0%
! TTTCAAAATGTTCATTTCAG+TGG - chr2_4:143774-143793 Msa0307270:intron 25.0%
! AAAGGTCTTAGTATTTGTAA+TGG - chr2_4:143883-143902 Msa0307270:CDS 25.0%
!! GGTATTCAGATCTTATATTT+TGG + chr2_4:143934-143953 None:intergenic 25.0%
! TGATACTTGTAAGTTGTATA+TGG + chr2_4:144056-144075 None:intergenic 25.0%
! ATTTAAAGAATAGGTCACTT+GGG + chr2_4:144172-144191 None:intergenic 25.0%
! AATTTAAAGAATAGGTCACT+TGG + chr2_4:144173-144192 None:intergenic 25.0%
! ACGATAATTTCTCTTATGTA+TGG - chr2_4:144307-144326 Msa0307270:intron 25.0%
!! CTTATTTGCCTTTATTTATC+AGG - chr2_4:144358-144377 Msa0307270:intron 25.0%
! AACCAAAAACAAAAACTAAC+CGG + chr2_4:144494-144513 None:intergenic 25.0%
! CATCTAAAAGTAGAAAACAA+AGG - chr2_4:144534-144553 Msa0307270:intron 25.0%
! TGGATAACATACATTAAAGT+CGG + chr2_4:144637-144656 None:intergenic 25.0%
! ATTATTGAATCTAAAGAGAG+TGG + chr2_4:144657-144676 None:intergenic 25.0%
!! ATAATTTCGATAGTCTTTTG+CGG + chr2_4:144693-144712 None:intergenic 25.0%
! TAAAGAGAAACATTTGCTTT+GGG - chr2_4:144780-144799 Msa0307270:intron 25.0%
! ATTCTTACGAAGTTTGTATT+TGG - chr2_4:144828-144847 Msa0307270:intron 25.0%
! TTCTACTCATTCATTTAATG+TGG - chr2_4:144902-144921 Msa0307270:intron 25.0%
! TCTACTCATTCATTTAATGT+GGG - chr2_4:144903-144922 Msa0307270:intron 25.0%
! CATAGGAAAAAAAGAATACA+TGG + chr2_4:145015-145034 None:intergenic 25.0%
!!! CATGTATTCTTTTTTTCCTA+TGG - chr2_4:145013-145032 Msa0307270:intron 25.0%
! AAATAAAGAACTCAAACCAT+AGG + chr2_4:145032-145051 None:intergenic 25.0%
!! TATGGTTTGAGTTCTTTATT+TGG - chr2_4:145031-145050 Msa0307270:intron 25.0%
! TTCATTTAATCTAAGCTATG+CGG - chr2_4:145078-145097 Msa0307270:intron 25.0%
!! GCATACTTATTCTTTCATTT+TGG - chr2_4:145284-145303 Msa0307270:intron 25.0%
! TGTGATTTCATCATTGTAAT+TGG - chr2_4:145482-145501 Msa0307270:intron 25.0%
! GTGATTTCATCATTGTAATT+GGG - chr2_4:145483-145502 Msa0307270:intron 25.0%
!!! TAATTAGGTTGCATTGTTTT+AGG - chr2_4:145513-145532 Msa0307270:intron 25.0%
! GTCTCTTAACAAAATTTACA+CGG - chr2_4:145672-145691 Msa0307270:five_prime_UTR 25.0%
CACAAATAATCTTGCTTAGT+TGG - chr2_4:140143-140162 Msa0307270:intron 30.0%
GAGAGATGATCTAAGAAAAT+TGG + chr2_4:140550-140569 None:intergenic 30.0%
AAAATTGTAGACAATGACGT+AGG + chr2_4:140619-140638 None:intergenic 30.0%
!! TTTTGTTGTGTAGATCTCTA+TGG - chr2_4:140643-140662 Msa0307270:intron 30.0%
!! CTATCTTTTTCATTAGGAGT+AGG - chr2_4:140849-140868 Msa0307270:CDS 30.0%
CATAAGTTGTAAAGGACAAA+GGG + chr2_4:140965-140984 None:intergenic 30.0%
! AGTTTAAAGCAACTATTGTC+AGG + chr2_4:141130-141149 None:intergenic 30.0%
TCTCTTAAACAGAACTTGAA+TGG - chr2_4:141209-141228 Msa0307270:intron 30.0%
AAATTCATCACCATGCAATT+AGG + chr2_4:141326-141345 None:intergenic 30.0%
! TAATTGCATGGTGATGAATT+TGG - chr2_4:141325-141344 Msa0307270:CDS 30.0%
! TACATTTTGCATACATGACA+TGG - chr2_4:141428-141447 Msa0307270:intron 30.0%
! AGAGCTTTTAATGTTCTATC+TGG - chr2_4:141465-141484 Msa0307270:intron 30.0%
TCGATAACATCTTTCAAAGA+AGG + chr2_4:141762-141781 None:intergenic 30.0%
!!! TGTTTTTTTCCCTCAACTTA+TGG - chr2_4:142082-142101 Msa0307270:intron 30.0%
!! GGTGATGTGTTTATTTTTCA+TGG - chr2_4:142103-142122 Msa0307270:intron 30.0%
!! ATATTTGAAAGGCCGTTTTA+CGG - chr2_4:142201-142220 Msa0307270:CDS 30.0%
! CTTTATTTCTTCCCGTAAAA+CGG + chr2_4:142216-142235 None:intergenic 30.0%
! TTTTACGGGAAGAAATAAAG+AGG - chr2_4:142216-142235 Msa0307270:CDS 30.0%
! ATTTCATTTTCTGTGGTAAC+TGG - chr2_4:142331-142350 Msa0307270:intron 30.0%
! TTTCATTTTCTGTGGTAACT+GGG - chr2_4:142332-142351 Msa0307270:intron 30.0%
TTGATATAAGCTCCAAAAGA+GGG + chr2_4:142397-142416 None:intergenic 30.0%
ATTGATATAAGCTCCAAAAG+AGG + chr2_4:142398-142417 None:intergenic 30.0%
! GCTTTTGAATTTTCTCAAAC+AGG - chr2_4:142603-142622 Msa0307270:CDS 30.0%
! TTTTGTGTTTTCTTACTGTC+AGG - chr2_4:143073-143092 Msa0307270:intron 30.0%
CATATACAATATGGATACTG+TGG + chr2_4:143290-143309 None:intergenic 30.0%
TTCCCCATTCATATACAATA+TGG + chr2_4:143299-143318 None:intergenic 30.0%
!! GCAAACTTTCACTATTTTGA+AGG + chr2_4:143428-143447 None:intergenic 30.0%
!!! AATGAACATTTTGAAACCTG+TGG + chr2_4:143770-143789 None:intergenic 30.0%
AGCATATGGTGAAAATTCAA+AGG - chr2_4:143865-143884 Msa0307270:CDS 30.0%
!!! TTATATTTTGGCTAGATTCC+AGG + chr2_4:143922-143941 None:intergenic 30.0%
CTTTACTGCTATCTAATTTG+AGG - chr2_4:144076-144095 Msa0307270:CDS 30.0%
CAAATATGCAACCATCAAAT+TGG + chr2_4:144335-144354 None:intergenic 30.0%
!! AGGAGCATATATTGATTTGT+TGG + chr2_4:144386-144405 None:intergenic 30.0%
!!! TAGTGTAAGTTTTTTGCCAT+CGG + chr2_4:144452-144471 None:intergenic 30.0%
ACAACTAATCCAATTCAAAC+CGG - chr2_4:144472-144491 Msa0307270:intron 30.0%
!! AAAAACTAACCGGTTTGAAT+TGG + chr2_4:144484-144503 None:intergenic 30.0%
!!! AACCGGTTAGTTTTTGTTTT+TGG - chr2_4:144489-144508 Msa0307270:intron 30.0%
AGATAAGTAGAAGAACATCA+AGG + chr2_4:144761-144780 None:intergenic 30.0%
CTAAAGAGAAACATTTGCTT+TGG - chr2_4:144779-144798 Msa0307270:intron 30.0%
!!! TTGGGAAATGGAGATTTTTT+TGG - chr2_4:144798-144817 Msa0307270:intron 30.0%
!! GTTTGTATTTGGTGTTATAC+AGG - chr2_4:144839-144858 Msa0307270:intron 30.0%
!! GTAGTTATTTCTCAGATGAA+TGG - chr2_4:144861-144880 Msa0307270:intron 30.0%
CTACTCATTCATTTAATGTG+GGG - chr2_4:144904-144923 Msa0307270:intron 30.0%
AAAATAGTACCTGCATTGTT+GGG + chr2_4:144986-145005 None:intergenic 30.0%
TAAAATAGTACCTGCATTGT+TGG + chr2_4:144987-145006 None:intergenic 30.0%
!!! TATTTTGGCAAGCAAGAAAA+GGG - chr2_4:145136-145155 Msa0307270:intron 30.0%
TCTATCTTTCTCTGATTCAA+AGG + chr2_4:145178-145197 None:intergenic 30.0%
TTCTCGTACATTATTGTCTA+CGG - chr2_4:145253-145272 Msa0307270:intron 30.0%
TAATTGGGTTTCCACTAATT+AGG - chr2_4:145498-145517 Msa0307270:intron 30.0%
AAACAATGCAACCTAATTAG+TGG + chr2_4:145512-145531 None:intergenic 30.0%
!! GAGTTTGTTACAACATGATT+AGG + chr2_4:145556-145575 None:intergenic 30.0%
GTAGTTGCATGCAACAAAAA+TGG + chr2_4:140243-140262 None:intergenic 35.0%
! ACAATTTGCTTCAAGTGCAA+TGG - chr2_4:140324-140343 Msa0307270:three_prime_UTR 35.0%
GATATATACTGTACTAGACG+TGG + chr2_4:140500-140519 None:intergenic 35.0%
! TGTTTGTTTGTTTGTTGAGC+TGG - chr2_4:140685-140704 Msa0307270:intron 35.0%
TAACCAGTATGCTATTACTG+TGG + chr2_4:140911-140930 None:intergenic 35.0%
CCATAAGTTGTAAAGGACAA+AGG + chr2_4:140966-140985 None:intergenic 35.0%
CCTTTGTCCTTTACAACTTA+TGG - chr2_4:140963-140982 Msa0307270:intron 35.0%
!! ATTGTCAGGTTGGTATAAGA+TGG + chr2_4:141116-141135 None:intergenic 35.0%
TAAAGCAACTATTGTCAGGT+TGG + chr2_4:141126-141145 None:intergenic 35.0%
GCTAAATCATCAACAACAGT+TGG - chr2_4:141263-141282 Msa0307270:CDS 35.0%
CTGTTTAACACCTAATTGCA+TGG - chr2_4:141313-141332 Msa0307270:CDS 35.0%
! TTTTGCATACATGACATGGA+AGG - chr2_4:141432-141451 Msa0307270:intron 35.0%
TTTGCATACATGACATGGAA+GGG - chr2_4:141433-141452 Msa0307270:intron 35.0%
TCCACGATATTCTTAACTGA+AGG - chr2_4:141530-141549 Msa0307270:intron 35.0%
ACCTTCAGTTAAGAATATCG+TGG + chr2_4:141534-141553 None:intergenic 35.0%
AATTGAAACCAAGATGCCAA+TGG - chr2_4:141623-141642 Msa0307270:intron 35.0%
TCTTGTCAAATTTACTGGCA+AGG + chr2_4:141836-141855 None:intergenic 35.0%
! AACACATCACCATAAGTTGA+GGG + chr2_4:142094-142113 None:intergenic 35.0%
AAACACATCACCATAAGTTG+AGG + chr2_4:142095-142114 None:intergenic 35.0%
!! TATTTGAAAGGCCGTTTTAC+GGG - chr2_4:142202-142221 Msa0307270:CDS 35.0%
AGAAACTCAAAAAGTCTGGA+AGG + chr2_4:142369-142388 None:intergenic 35.0%
!!! TCCAGACTTTTTGAGTTTCT+CGG - chr2_4:142369-142388 Msa0307270:intron 35.0%
!! GTTAAGTTGACTCAGAATGA+AGG - chr2_4:142547-142566 Msa0307270:intron 35.0%
TGATTCCATCTTTGTTCTAC+AGG - chr2_4:142712-142731 Msa0307270:intron 35.0%
! TTCTGAAGATGCTAAGAAGT+TGG - chr2_4:142736-142755 Msa0307270:intron 35.0%
AATTGTGCAATCAAACAGCA+TGG + chr2_4:142886-142905 None:intergenic 35.0%
GCTGTTTGATTGCACAATTA+TGG - chr2_4:142887-142906 Msa0307270:CDS 35.0%
CACAAAAAATGCATGCTTGA+AGG + chr2_4:143060-143079 None:intergenic 35.0%
TTCAATTCAGCTTCAGAAAG+AGG - chr2_4:143539-143558 Msa0307270:CDS 35.0%
TTTCTATTAGACTCTCTCGA+CGG + chr2_4:143598-143617 None:intergenic 35.0%
!! TTAGATGGTTCTGAAGCTTT+GGG - chr2_4:143707-143726 Msa0307270:intron 35.0%
! GTTCTGAATGATGTGAATTC+AGG + chr2_4:143955-143974 None:intergenic 35.0%
! GATGTTTCCTTGATAATCCT+CGG - chr2_4:144098-144117 Msa0307270:CDS 35.0%
TATTGCGTTTCCACATTGTA+TGG + chr2_4:144146-144165 None:intergenic 35.0%
!! TGACAAAGAAAAAGCATCAG+AGG + chr2_4:144243-144262 None:intergenic 35.0%
TATGTATGGCTCCAATTTGA+TGG - chr2_4:144321-144340 Msa0307270:intron 35.0%
TGTTGGCACCTGATAAATAA+AGG + chr2_4:144369-144388 None:intergenic 35.0%
TAACATTCTCCCAACATCAA+GGG + chr2_4:144413-144432 None:intergenic 35.0%
!!! TAAAGTCGGTGTTGGATTTT+CGG + chr2_4:144623-144642 None:intergenic 35.0%
ACATACATTAAAGTCGGTGT+TGG + chr2_4:144631-144650 None:intergenic 35.0%
CTATCGAAATTATCACCTCA+AGG - chr2_4:144700-144719 Msa0307270:intron 35.0%
TATTCATATGATTCGCCTTG+AGG + chr2_4:144718-144737 None:intergenic 35.0%
!! GAAACATTTGCTTTGGGAAA+TGG - chr2_4:144786-144805 Msa0307270:intron 35.0%
AAATAGTACCTGCATTGTTG+GGG + chr2_4:144985-145004 None:intergenic 35.0%
! GGTTTGAGTTCTTTATTTGG+CGG - chr2_4:145034-145053 Msa0307270:intron 35.0%
!!! CTATTTTGGCAAGCAAGAAA+AGG - chr2_4:145135-145154 Msa0307270:intron 35.0%
!! CTGATCAAACTCACTTTTGT+TGG + chr2_4:145418-145437 None:intergenic 35.0%
AGTGAGTTTGATCAGATTCT+TGG - chr2_4:145423-145442 Msa0307270:intron 35.0%
!! GTGCTTGTCTTGTTTAAGAA+AGG - chr2_4:145459-145478 Msa0307270:intron 35.0%
ATTCGTTCATTTGTTCACTG+TGG - chr2_4:145588-145607 Msa0307270:five_prime_UTR 35.0%
!!! ACTGCGAAATGTCCTTTTTT+CGG - chr2_4:145701-145720 Msa0307270:five_prime_UTR 35.0%
!!! GTCCTTTTTTCGGTTTATCA+CGG - chr2_4:145711-145730 Msa0307270:five_prime_UTR 35.0%
CAACCACAGTAATAGCATAC+TGG - chr2_4:140905-140924 Msa0307270:intron 40.0%
TTGGTGAGCATACATGACTT+AGG - chr2_4:141282-141301 Msa0307270:CDS 40.0%
GTGTACTACACAACAGGAAA+GGG + chr2_4:141356-141375 None:intergenic 40.0%
TGTGTACTACACAACAGGAA+AGG + chr2_4:141357-141376 None:intergenic 40.0%
TTCCTGTTGTGTAGTACACA+TGG - chr2_4:141357-141376 Msa0307270:intron 40.0%
TACCATGTGTACTACACAAC+AGG + chr2_4:141362-141381 None:intergenic 40.0%
TGTGTAGTACACATGGTAGT+TGG - chr2_4:141364-141383 Msa0307270:intron 40.0%
GGCATCTTGGTTTCAATTTC+AGG + chr2_4:141621-141640 None:intergenic 40.0%
TCAGCCCCTAGTTTATACTT+TGG + chr2_4:141699-141718 None:intergenic 40.0%
CTTGTTCTGCTCTGACAAAT+TGG + chr2_4:141796-141815 None:intergenic 40.0%
AATTCAGGCAAAGCTAAGAG+AGG - chr2_4:142126-142145 Msa0307270:intron 40.0%
GGGAAGAAATAAAGAGGATG+TGG - chr2_4:142222-142241 Msa0307270:CDS 40.0%
AGAAGCCTGTAGAACAAAGA+TGG + chr2_4:142720-142739 None:intergenic 40.0%
AACCTGTGGTTTAGAAGCTT+GGG + chr2_4:142858-142877 None:intergenic 40.0%
! GTTTTCTTACTGTCAGGATG+TGG - chr2_4:143079-143098 Msa0307270:intron 40.0%
AGGCATTAATGTACCTTGCT+TGG + chr2_4:143158-143177 None:intergenic 40.0%
!! ACAATTTCAGGTTATGGCCA+TGG - chr2_4:143467-143486 Msa0307270:intron 40.0%
AATATGAACTCCGTGCTCTA+AGG - chr2_4:143490-143509 Msa0307270:CDS 40.0%
ATATGAACTCCGTGCTCTAA+GGG - chr2_4:143491-143510 Msa0307270:CDS 40.0%
GAATTTGATCCCTTAGAGCA+CGG + chr2_4:143503-143522 None:intergenic 40.0%
!! GTTAGATGGTTCTGAAGCTT+TGG - chr2_4:143706-143725 Msa0307270:intron 40.0%
AATGGTCTTCGTATTTGACC+TGG - chr2_4:143901-143920 Msa0307270:CDS 40.0%
GGACTATGCAGATTTCTACT+TGG + chr2_4:144125-144144 None:intergenic 40.0%
TCTGCATAGTCCATACAATG+TGG - chr2_4:144133-144152 Msa0307270:five_prime_UTR 40.0%
!! AAAAAGCATCAGAGGTATCG+AGG + chr2_4:144235-144254 None:intergenic 40.0%
AACATTCTCCCAACATCAAG+GGG + chr2_4:144412-144431 None:intergenic 40.0%
GTAACATTCTCCCAACATCA+AGG + chr2_4:144414-144433 None:intergenic 40.0%
TGTTGGGAGAATGTTACAAG+TGG - chr2_4:144417-144436 Msa0307270:intron 40.0%
CATTTAATGTGGGGAGAATG+AGG - chr2_4:144913-144932 Msa0307270:intron 40.0%
TGCTACTACACTAGATCATC+TGG + chr2_4:145375-145394 None:intergenic 40.0%
CATATTCCTACTAGTTGTCG+CGG - chr2_4:145619-145638 Msa0307270:five_prime_UTR 40.0%
TTGTCGCGGTAGCTAAATTA+TGG - chr2_4:145633-145652 Msa0307270:five_prime_UTR 40.0%
TGCCGTGATAAACCGAAAAA+AGG + chr2_4:145716-145735 None:intergenic 40.0%
GGAACTGCATAAGCTGTGTT+TGG - chr2_4:140164-140183 Msa0307270:intron 45.0%
TGAGATCACAAGCAAGCAAG+AGG + chr2_4:140522-140541 None:intergenic 45.0%
CGTGTCGCCATAAGTTGTAA+AGG + chr2_4:140973-140992 None:intergenic 45.0%
AACTGCTTCCATTGGCATCT+TGG + chr2_4:141634-141653 None:intergenic 45.0%
!!! AGTTTTTCAAGAGCCTGCTG+AGG - chr2_4:141725-141744 Msa0307270:intron 45.0%
AGCTGCTAAGCTGTCTAATG+AGG - chr2_4:141866-141885 Msa0307270:intron 45.0%
GCTAAGAGAGGTTCCATCTT+TGG - chr2_4:142138-142157 Msa0307270:intron 45.0%
AAGAGAGGTTCCATCTTTGG+AGG - chr2_4:142141-142160 Msa0307270:intron 45.0%
AGAGAGGTTCCATCTTTGGA+GGG - chr2_4:142142-142161 Msa0307270:intron 45.0%
TGTGGCGAATGCTATCTCTA+TGG - chr2_4:142240-142259 Msa0307270:intron 45.0%
GCCGAGAAACTCAAAAAGTC+TGG + chr2_4:142373-142392 None:intergenic 45.0%
TGCTCTAGCACTCTCGATTT+CGG + chr2_4:142789-142808 None:intergenic 45.0%
TACCCAAGCTTCTAAACCAC+AGG - chr2_4:142853-142872 Msa0307270:intron 45.0%
GAACCTGTGGTTTAGAAGCT+TGG + chr2_4:142859-142878 None:intergenic 45.0%
TCTTACTGTCAGGATGTGGA+TGG - chr2_4:143083-143102 Msa0307270:intron 45.0%
ACTGGTAGAAGAGGTTCAAG+AGG - chr2_4:143106-143125 Msa0307270:intron 45.0%
AGCACGGAGTTCATATTCCA+TGG + chr2_4:143487-143506 None:intergenic 45.0%
GCAGCTAACAATGAGCAAGT+GGG - chr2_4:143655-143674 Msa0307270:intron 45.0%
AACAATGAGCAAGTGGGACA+AGG - chr2_4:143661-143680 Msa0307270:intron 45.0%
TGGTATCGCTTGTCATCTGA+AGG - chr2_4:143794-143813 Msa0307270:intron 45.0%
! AGCTGGAGGGAAGTTATTTC+AGG - chr2_4:143818-143837 Msa0307270:intron 45.0%
ACTTGGACCGAGGATTATCA+AGG + chr2_4:144108-144127 None:intergenic 45.0%
GGGACTGTTACACACAAGAT+AGG + chr2_4:144570-144589 None:intergenic 45.0%
ATCTTGTGTGTAACAGTCCC+AGG - chr2_4:144570-144589 Msa0307270:intron 45.0%
GATTTACTCCCCAACAATGC+AGG - chr2_4:144974-144993 Msa0307270:intron 45.0%
ATGTTGCGATTATGATCGCC+AGG - chr2_4:145199-145218 Msa0307270:intron 45.0%
! GCAATCAAGAGCATGTTTCC+TGG + chr2_4:145220-145239 None:intergenic 45.0%
! TTTTGACAGGTTGTGCTTGC+TGG - chr2_4:145348-145367 Msa0307270:intron 45.0%
TTTGACAGGTTGTGCTTGCT+GGG - chr2_4:145349-145368 Msa0307270:intron 45.0%
! ACCGCGTCATGTCTTTTCTT+CGG - chr2_4:145740-145759 Msa0307270:five_prime_UTR 45.0%
ACCGAAGAAAAGACATGACG+CGG + chr2_4:145744-145763 None:intergenic 45.0%
!! AAAAAATTAAAAATAGTAAA+AGG + chr2_4:139955-139974 None:intergenic 5.0%
!!! TTTAATTTTATTTTTATGTT+AGG - chr2_4:140591-140610 Msa0307270:CDS 5.0%
!!! AAAAATTTAATTTAAAGAAT+AGG + chr2_4:144181-144200 None:intergenic 5.0%
AGAGCCTGCTGAGGATAATC+AGG - chr2_4:141734-141753 Msa0307270:intron 50.0%
GAGCCTGCTGAGGATAATCA+GGG - chr2_4:141735-141754 Msa0307270:intron 50.0%
! GAGAGGTTCCATCTTTGGAG+GGG - chr2_4:142143-142162 Msa0307270:intron 50.0%
AGAACATGCCCCTCCAAAGA+TGG + chr2_4:142154-142173 None:intergenic 50.0%
! AGTTTCTCGGCTCCCTCTTT+TGG - chr2_4:142382-142401 Msa0307270:intron 50.0%
!! AATCGAGAGTGCTAGAGCAG+TGG - chr2_4:142790-142809 Msa0307270:intron 50.0%
! AGAGCAGTGGTGCTGAGAAT+TGG - chr2_4:142803-142822 Msa0307270:intron 50.0%
! AGTGGTGCTGAGAATTGGAG+AGG - chr2_4:142808-142827 Msa0307270:intron 50.0%
!! GAGAATTGGAGAGGCACTTG+AGG - chr2_4:142817-142836 Msa0307270:intron 50.0%
ACAGCATGGTGTAGAACCTG+TGG + chr2_4:142872-142891 None:intergenic 50.0%
!! TGTGGATGGACTGGTAGAAG+AGG - chr2_4:143097-143116 Msa0307270:intron 50.0%
ATTGCTGCATCAGCCAAGCA+AGG - chr2_4:143142-143161 Msa0307270:CDS 50.0%
GGCAGCTAACAATGAGCAAG+TGG - chr2_4:143654-143673 Msa0307270:intron 50.0%
TGTGGCACTTCATTCGTGCA+AGG + chr2_4:143752-143771 None:intergenic 50.0%
! TTGCACGAATGAAGTGCCAC+AGG - chr2_4:143751-143770 Msa0307270:intron 50.0%
GCAGATTTCTACTTGGACCG+AGG + chr2_4:144118-144137 None:intergenic 50.0%
CTCCTGATCCCCTTGATGTT+GGG - chr2_4:144401-144420 Msa0307270:intron 50.0%
CAAGTGGACATTGTCTCCGA+TGG - chr2_4:144433-144452 Msa0307270:intron 50.0%
TGTGTAACAGTCCCAGGACT+CGG - chr2_4:144576-144595 Msa0307270:intron 50.0%
TGCGGAGTCAGAAGTGATGT+CGG - chr2_4:145096-145115 Msa0307270:intron 50.0%
!!! ACGCAGCGAAGGCACTATTT+TGG - chr2_4:145121-145140 Msa0307270:intron 50.0%
TAGCTACCGCGACAACTAGT+AGG + chr2_4:145628-145647 None:intergenic 50.0%
ACAGGCGGAACTGCTTCCAT+TGG + chr2_4:141642-141661 None:intergenic 55.0%
GGAAGCAGTTCCGCCTGTTT+CGG - chr2_4:141644-141663 Msa0307270:intron 55.0%
AAGCTCACATCGGCCGAAAC+AGG + chr2_4:141660-141679 None:intergenic 55.0%
GGACCCTGATTATCCTCAGC+AGG + chr2_4:141741-141760 None:intergenic 55.0%
CTGTCAGGATGTGGATGGAC+TGG - chr2_4:143088-143107 Msa0307270:intron 55.0%
GCTTGTCATCTGAAGGCAGC+TGG - chr2_4:143801-143820 Msa0307270:intron 55.0%
TGTCATCTGAAGGCAGCTGG+AGG - chr2_4:143804-143823 Msa0307270:intron 55.0%
GTCATCTGAAGGCAGCTGGA+GGG - chr2_4:143805-143824 Msa0307270:intron 55.0%
GCTCCTGATCCCCTTGATGT+TGG - chr2_4:144400-144419 Msa0307270:intron 55.0%
CTCCCAACATCAAGGGGATC+AGG + chr2_4:144406-144425 None:intergenic 55.0%
!! TTCGGAGAAGTGCCTCCACA+TGG + chr2_4:144605-144624 None:intergenic 55.0%
TGATGTCGGTAACGCAGCGA+AGG - chr2_4:145110-145129 Msa0307270:intron 55.0%
CTCACATCGGCCGAAACAGG+CGG + chr2_4:141657-141676 None:intergenic 60.0%
CCACATGGCTTCCGAGTCCT+GGG + chr2_4:144590-144609 None:intergenic 60.0%
TCCACATGGCTTCCGAGTCC+TGG + chr2_4:144591-144610 None:intergenic 60.0%
AGGACTCGGAAGCCATGTGG+AGG - chr2_4:144590-144609 Msa0307270:intron 60.0%
CCCAGGACTCGGAAGCCATG+TGG - chr2_4:144587-144606 Msa0307270:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 139940 145795 139940 ID=Msa0307270;Name=Msa0307270
chr2_4 mRNA 139940 145795 139940 ID=Msa0307270-mRNA-1;Parent=Msa0307270;Name=Msa0307270-mRNA-1;_AED=0.14;_eAED=0.14;_QI=292|1|1|1|0.84|0.71|14|96|490
chr2_4 exon 139940 140001 139940 ID=Msa0307270-mRNA-1:exon:45;Parent=Msa0307270-mRNA-1
chr2_4 exon 140312 140378 140312 ID=Msa0307270-mRNA-1:exon:44;Parent=Msa0307270-mRNA-1
chr2_4 exon 140493 140642 140493 ID=Msa0307270-mRNA-1:exon:43;Parent=Msa0307270-mRNA-1
chr2_4 exon 140740 140874 140740 ID=Msa0307270-mRNA-1:exon:42;Parent=Msa0307270-mRNA-1
chr2_4 exon 141091 141149 141091 ID=Msa0307270-mRNA-1:exon:41;Parent=Msa0307270-mRNA-1
chr2_4 exon 141242 141355 141242 ID=Msa0307270-mRNA-1:exon:40;Parent=Msa0307270-mRNA-1
chr2_4 exon 141896 142076 141896 ID=Msa0307270-mRNA-1:exon:39;Parent=Msa0307270-mRNA-1
chr2_4 exon 142175 142258 142175 ID=Msa0307270-mRNA-1:exon:38;Parent=Msa0307270-mRNA-1
chr2_4 exon 142572 142640 142572 ID=Msa0307270-mRNA-1:exon:37;Parent=Msa0307270-mRNA-1
chr2_4 exon 142861 143001 142861 ID=Msa0307270-mRNA-1:exon:36;Parent=Msa0307270-mRNA-1
chr2_4 exon 143111 143203 143111 ID=Msa0307270-mRNA-1:exon:35;Parent=Msa0307270-mRNA-1
chr2_4 exon 143474 143602 143474 ID=Msa0307270-mRNA-1:exon:34;Parent=Msa0307270-mRNA-1
chr2_4 exon 143848 144152 143848 ID=Msa0307270-mRNA-1:exon:33;Parent=Msa0307270-mRNA-1
chr2_4 exon 145524 145795 145524 ID=Msa0307270-mRNA-1:exon:32;Parent=Msa0307270-mRNA-1
chr2_4 five_prime_UTR 145524 145795 145524 ID=Msa0307270-mRNA-1:five_prime_utr;Parent=Msa0307270-mRNA-1
chr2_4 five_prime_UTR 144133 144152 144133 ID=Msa0307270-mRNA-1:five_prime_utr;Parent=Msa0307270-mRNA-1
chr2_4 CDS 143848 144132 143848 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 143474 143602 143474 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 143111 143203 143111 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 142861 143001 142861 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 142572 142640 142572 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 142175 142258 142175 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 141896 142076 141896 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 141242 141355 141242 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 141091 141149 141091 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 140740 140874 140740 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 140493 140642 140493 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 CDS 140346 140378 140346 ID=Msa0307270-mRNA-1:cds;Parent=Msa0307270-mRNA-1
chr2_4 three_prime_UTR 140312 140345 140312 ID=Msa0307270-mRNA-1:three_prime_utr;Parent=Msa0307270-mRNA-1
chr2_4 three_prime_UTR 139940 140001 139940 ID=Msa0307270-mRNA-1:three_prime_utr;Parent=Msa0307270-mRNA-1
Gene Sequence

>Msa0307270

ATGACAAAGATTAGTCCTGAAATTGAAACCAAGATGCCAATGGAAGCAGTTCCGCCTGTTTCGGCCGATGTGAGCTTTATTTCTAATAGTTTTCCAAAGTATAAACTAGGGGCTGATCATCAAGTTTTTCAAGAGCCTGCTGAGGATAATCAGGGTCCTTCTTTGAAAGATGTTATCGAACAAGAAGCTTCCAATTTGTCAGAGCAGAACAAGCGTATCTCAGTTCGTGACCTTGCCAGTAAATTTGACAAGAACTTATCAGCAGCTGCTAAGCTGTCTAATGAGGCAAAGCTAAGAGAGGTTCCATCTTTGGAGGGGCATGTTCTTTTGAAGAAGCTAAGAGATGCATTAGAATATTTGAAAGGCCGTTTTACGGGAAGAAATAAAGAGGATGTGGCGAATGCTATCTCTATGGTGGAAGCTTTAGCTGTTAAGTTGACTCAGAATGAAGGAGAACTGATTCAAGAGAAGTTTGAAGTGAAAAAGCTTTTGAATTTTCTCAAACAGGCTTCTGAAGATGCTAAGAAGTTGGTTAATCAAGAGAAGTCTTTTGCTTGTGCCGAAATCGAGAGTGCTAGAGCAGTGGTGCTGAGAATTGGAGAGGCACTTGAGGAACAAGAAAAAGTTACCCAAGCTTCTAAACCACAGGATGTGGATGGACTGGTAGAAGAGGTTCAAGAGGCTAGAAGAATCAGATTGCTGCATCAGCCAAGCAAGGTTATGGCCATGGAATATGAACTCCGTGCTCTAAGGGATCAAATTCAAGAAAAATCGGTATTTTCAATTCAGCTTCAGAAAGAGCTAACAATGAGCAAGTGGGACAAGGAGAATAAATCTCATTCATATAAGTTAGATGGTTCTGAAGCTTTGGGTTCATATATGCAAGTCAAGCCTTGCACGAATGAAGTGCCACAGGTTTCAAAATGTTCATTTCAGTGGTATCGCTTGTCATCTGAAGGCAGCTGGAGGGAAGTTATTTCAGGTGCCAACAAATCAATATATGCTCCTGATCCCCTTGATGTTGGGAGAATGTTACAAGTGGACATTGTCTCCGATGGCAAAAAACTTACACTAACAACTAATCCAATTCAAACCGTCCCAGGACTCGGAAGCCATGTGGAGGCACTTCTCCGAAAATCCAACACCGACTTTAATGTAGTTATTTCTCAGATGAATGGAAAAGATCACTCATCACATTCTACTCATTCATTTAATGTGGGGAGAATGAGGATAAAGCTATGTAGGGGTTGGATCACAAAAGCTAGAGAGATTTACTCCCCAACAATGCAGCTATGCGGAGTCAGAAGTGATGTCGGTAACGCAGCGAAGGCACTATTTTGGCAAGCAAGAAAAGGGCTATCGTTTGTGTTAACCTTTGAATCAGAGAAAGATAGAAATGTTGCGATTATGATCGCCAGGAAACATGCTCTTGATTGCAATGTTGTGCTTGCTGGGCCAGATGATCTAGTGTAG

Protein sequence

>Msa0307270

MTKISPEIETKMPMEAVPPVSADVSFISNSFPKYKLGADHQVFQEPAEDNQGPSLKDVIEQEASNLSEQNKRISVRDLASKFDKNLSAAAKLSNEAKLREVPSLEGHVLLKKLRDALEYLKGRFTGRNKEDVANAISMVEALAVKLTQNEGELIQEKFEVKKLLNFLKQASEDAKKLVNQEKSFACAEIESARAVVLRIGEALEEQEKVTQASKPQDVDGLVEEVQEARRIRLLHQPSKVMAMEYELRALRDQIQEKSVFSIQLQKELTMSKWDKENKSHSYKLDGSEALGSYMQVKPCTNEVPQVSKCSFQWYRLSSEGSWREVISGANKSIYAPDPLDVGRMLQVDIVSDGKKLTLTTNPIQTVPGLGSHVEALLRKSNTDFNVVISQMNGKDHSSHSTHSFNVGRMRIKLCRGWITKAREIYSPTMQLCGVRSDVGNAAKALFWQARKGLSFVLTFESEKDRNVAIMIARKHALDCNVVLAGPDDLV*