AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077340 MtrunA17_Chr1g0187121 93.995 383 22 1 1 382 1 383 0.0 734
Msa0077340 MtrunA17_Chr1g0190551 43.023 258 133 6 61 313 45 293 9.70e-45 158
Msa0077340 MtrunA17_Chr7g0274281 58.993 139 53 1 179 317 178 312 1.55e-33 128
Msa0077340 MtrunA17_Chr7g0267791 54.198 131 54 3 185 315 213 337 4.78e-31 122
Msa0077340 MtrunA17_Chr1g0149361 53.913 115 48 2 217 331 229 338 1.00e-29 119
Msa0077340 MtrunA17_Chr3g0137761 60.870 92 36 0 217 308 212 303 7.86e-29 116
Msa0077340 MtrunA17_Chr1g0176611 60.194 103 39 2 213 315 231 331 1.01e-27 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077340 AT3G23090.1 49.701 334 128 8 7 333 2 302 8.05e-83 256
Msa0077340 AT3G23090.4 49.701 334 128 8 7 333 38 338 1.86e-82 256
Msa0077340 AT3G23090.5 49.401 334 129 8 7 333 3 303 6.00e-82 254
Msa0077340 AT3G23090.2 49.112 338 128 9 7 333 2 306 3.51e-81 252
Msa0077340 AT3G23090.3 49.112 338 128 9 7 333 38 342 6.98e-81 253
Msa0077340 AT1G54460.1 48.551 276 106 11 63 335 40 282 3.27e-61 201
Msa0077340 AT3G04630.3 60.993 141 52 2 168 305 82 222 3.09e-50 171
Msa0077340 AT3G04630.1 60.993 141 52 2 168 305 78 218 3.15e-50 171
Msa0077340 AT3G04630.2 62.222 135 49 1 173 305 83 217 5.16e-50 170
Msa0077340 AT5G28646.2 54.194 155 62 3 162 314 40 187 3.86e-41 144
Msa0077340 AT5G28646.1 54.194 155 62 3 162 314 40 187 3.86e-41 144
Msa0077340 AT5G28646.3 58.647 133 49 2 184 314 55 183 1.65e-40 142
Msa0077340 AT2G35880.3 57.143 133 54 2 178 310 210 339 2.94e-33 129
Msa0077340 AT2G35880.2 57.143 133 54 2 178 310 210 339 2.94e-33 129
Msa0077340 AT2G35880.1 57.143 133 54 2 178 310 210 339 2.94e-33 129
Msa0077340 AT4G32330.1 54.098 122 56 0 189 310 180 301 7.90e-31 122
Msa0077340 AT4G32330.4 54.098 122 56 0 189 310 180 301 7.90e-31 122
Msa0077340 AT4G32330.3 54.098 122 56 0 189 310 180 301 7.90e-31 122
Msa0077340 AT4G32330.2 61.702 94 36 0 217 310 207 300 1.83e-30 121
Msa0077340 AT2G25480.2 58.416 101 41 1 217 317 184 283 1.81e-27 112
Msa0077340 AT2G25480.1 58.416 101 41 1 217 317 183 282 1.86e-27 112
Msa0077340 AT1G70950.1 50.617 81 40 0 218 298 330 410 4.05e-16 80.1

Find 103 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCAATAGTTTGTTATTA+AGG 0.161776 1_2:-54229651 Msa0077340:three_prime_UTR
GTCACATTGTTTGAAGTTAT+TGG 0.185251 1_2:-54229715 Msa0077340:three_prime_UTR
ATCTCAAGTTATTTGTAAAA+AGG 0.213581 1_2:-54229796 Msa0077340:three_prime_UTR
GATTCATGTTCAGTTGCTTC+TGG 0.221500 1_2:-54231245 Msa0077340:CDS
TTTCTGTCTGCCTCAACTTC+AGG 0.221974 1_2:-54229738 Msa0077340:three_prime_UTR
CTCTTTCGCCGACCCAGTTT+TGG 0.233302 1_2:+54230219 None:intergenic
TCTGAATGTTTCTTGTTATC+AGG 0.235516 1_2:+54231275 None:intergenic
ATGACTCACATTTAGAGTTT+TGG 0.250804 1_2:+54232962 None:intergenic
AGAAAGTGCTTATAAGTTAA+AGG 0.253991 1_2:+54229866 None:intergenic
ATCATAGAGAATCTTATTTC+AGG 0.276186 1_2:+54229612 None:intergenic
ACTTCTAATTTATGAGTTTC+CGG 0.286282 1_2:-54229940 Msa0077340:three_prime_UTR
GATGGAATTTCGCACAATTC+AGG 0.294711 1_2:-54231882 Msa0077340:CDS
ACGTGCAAAATCTCCAAAAC+TGG 0.305226 1_2:-54230232 Msa0077340:CDS
ATGCAATAGTTTGTTATTAA+GGG 0.313028 1_2:-54229650 Msa0077340:three_prime_UTR
ATTAATTTCTTCAATTAATT+CGG 0.315412 1_2:+54230035 None:intergenic
CTTTCAGTTGCTAGGGAAAA+TGG 0.316077 1_2:+54231579 None:intergenic
AATCTCATTGAAGACTTTAC+TGG 0.317150 1_2:+54229971 None:intergenic
ACTCCTCCTCAACTGTTTGA+TGG 0.328938 1_2:+54230720 None:intergenic
TCTGAAGGGGTCAAAGAAAA+AGG 0.336391 1_2:-54230174 Msa0077340:CDS
TTGCTTCTGCTCCAAGCTTT+CGG 0.336692 1_2:-54231049 Msa0077340:CDS
ACCTTCTTCAAGTCAACTTT+AGG 0.339340 1_2:+54230646 None:intergenic
CTTCTAATTTATGAGTTTCC+GGG 0.356248 1_2:-54229939 Msa0077340:three_prime_UTR
TTCTGTCTGCCTCAACTTCA+GGG 0.362550 1_2:-54229737 Msa0077340:three_prime_UTR
CATATTGTGATTATCAGTTC+CGG 0.379451 1_2:+54231851 None:intergenic
CGGAACTGATAATCACAATA+TGG 0.387299 1_2:-54231850 Msa0077340:CDS
AACGGTTTCCTTGGAACTAA+AGG 0.390764 1_2:+54231302 None:intergenic
AATAATGATGTTCAGTGAAC+AGG 0.391655 1_2:-54229690 Msa0077340:three_prime_UTR
ATTCATGTTCAGTTGCTTCT+GGG 0.401381 1_2:-54231244 Msa0077340:intron
TTGTTATCTTCTTCAAAAGT+AGG 0.404232 1_2:+54231534 None:intergenic
TTGAGAACACCCTCAAAATC+TGG 0.409193 1_2:+54231678 None:intergenic
TTCAATTAATTCGGTGTGCT+CGG 0.412792 1_2:+54230044 None:intergenic
GAAGATAACAAGGGCGGTAA+TGG 0.429080 1_2:-54231522 Msa0077340:CDS
TAATACGCTTAAACAGAATC+AGG 0.429313 1_2:-54231463 Msa0077340:intron
CTGTGAGGTCTTTCAAGTCC+AGG 0.430512 1_2:-54231079 Msa0077340:CDS
TCATAGAGAATCTTATTTCA+GGG 0.431405 1_2:+54229613 None:intergenic
TGATGAGTTTGTGAATTACT+AGG 0.440371 1_2:+54233033 None:intergenic
TGAAATAAGATTCTCTATGA+TGG 0.444022 1_2:-54229610 Msa0077340:three_prime_UTR
AAGGAAATTCTATTGCTCAT+AGG 0.446691 1_2:-54229777 Msa0077340:three_prime_UTR
TCAGGTTTCAACGGTTTCCT+TGG 0.446814 1_2:+54231293 None:intergenic
CACAATTCAGGTCATGAAAC+CGG 0.449746 1_2:-54231870 Msa0077340:CDS
TCTTTGTTATATAGTGCAAT+GGG 0.450750 1_2:-54231963 Msa0077340:intron
AGAAGTTTCTGTTAAGGCCT+CGG 0.454828 1_2:-54231739 Msa0077340:CDS
TTCTTTGTTATATAGTGCAA+TGG 0.455351 1_2:-54231964 Msa0077340:intron
ATTTATGAGTTTCCGGGGAA+TGG 0.455619 1_2:-54229933 Msa0077340:three_prime_UTR
TGTTCCTTGCAACTTTCTGA+AGG 0.459969 1_2:-54229904 Msa0077340:three_prime_UTR
CACATCACTCAAGTTACAAC+TGG 0.463926 1_2:+54230116 None:intergenic
TACAACAGAAGTTTCTGTTA+AGG 0.465193 1_2:-54231745 Msa0077340:CDS
CGTTCAGTCGACCGAAAGCT+TGG 0.469154 1_2:+54231038 None:intergenic
ATTAATATGATCAAAGTGAA+TGG 0.469665 1_2:-54230018 Msa0077340:CDS
TTCAAGTCAACTTTAGGTGG+AGG 0.483139 1_2:+54230652 None:intergenic
TTCAGATATTTGTATCATCA+AGG 0.486869 1_2:-54231931 Msa0077340:CDS
ATCGATTAAGGAAGAGAAAG+AGG 0.493171 1_2:-54230746 Msa0077340:intron
TGAAGTCTCCTTTAGTTCCA+AGG 0.494501 1_2:-54231310 Msa0077340:CDS
ATAGTTTGTTATTAAGGGAA+AGG 0.495055 1_2:-54229645 Msa0077340:three_prime_UTR
TTCTTCAAGTCAACTTTAGG+TGG 0.500721 1_2:+54230649 None:intergenic
GTTCCTTGCAACTTTCTGAA+GGG 0.511117 1_2:-54229903 Msa0077340:three_prime_UTR
AGCAGAAGCAACAGTTGCCC+TGG 0.512471 1_2:+54231061 None:intergenic
GAATAGACTACAACACGATC+TGG 0.520100 1_2:+54231906 None:intergenic
GTTCGAAACCGCACAAAACA+AGG 0.521164 1_2:-54231647 Msa0077340:CDS
TCGTGGTAAAAGCTTGGCAT+AGG 0.526747 1_2:+54230679 None:intergenic
AGCACGCCTTTCAGTTGCTA+GGG 0.527177 1_2:+54231572 None:intergenic
GAAAATGGTCGCGGAACTGT+AGG 0.532713 1_2:+54231594 None:intergenic
GGCCCCTCGTGGTAAAAGCT+TGG 0.537816 1_2:+54230673 None:intergenic
GTGCAGCTAATTCATCTGAA+GGG 0.542207 1_2:-54230188 Msa0077340:CDS
TAGCACGCCTTTCAGTTGCT+AGG 0.543009 1_2:+54231571 None:intergenic
TGTGAGGTCTTTCAAGTCCA+GGG 0.549601 1_2:-54231078 Msa0077340:CDS
ACTAACGACAATGGCTTGGA+TGG 0.551118 1_2:-54230093 Msa0077340:CDS
TTCTTGTTATCAGGTTTCAA+CGG 0.554280 1_2:+54231284 None:intergenic
CGTGGTAAAAGCTTGGCATA+GGG 0.555406 1_2:+54230680 None:intergenic
AGAGGAAAAGCAACAAGCAA+TGG 0.560439 1_2:-54230897 Msa0077340:CDS
GGTGCAGCTAATTCATCTGA+AGG 0.565625 1_2:-54230189 Msa0077340:CDS
TGAACGCGCACAAAGAAGAA+AGG 0.565933 1_2:-54231021 Msa0077340:CDS
CACAAAGGAATACGAGGTGA+AGG 0.571994 1_2:-54231772 Msa0077340:CDS
ACCTAAAGTTGACTTGAAGA+AGG 0.572341 1_2:-54230647 Msa0077340:intron
TGTGACTAACGACAATGGCT+TGG 0.576886 1_2:-54230097 Msa0077340:CDS
ATCAAAGTGAATGGACAAGC+GGG 0.577317 1_2:-54230009 Msa0077340:CDS
CGTGCAAAATCTCCAAAACT+GGG 0.584227 1_2:-54230231 Msa0077340:CDS
AAGCCATCAAACAGTTGAGG+AGG 0.591790 1_2:-54230723 Msa0077340:CDS
TTCTAATTTATGAGTTTCCG+GGG 0.592283 1_2:-54229938 Msa0077340:three_prime_UTR
ACAATGTGACCCTGAAGTTG+AGG 0.592428 1_2:+54229728 None:intergenic
CGTGTTGTAGTCTATTCCGA+TGG 0.596110 1_2:-54231900 Msa0077340:CDS
AGGAAGCCATCAAACAGTTG+AGG 0.603449 1_2:-54230726 Msa0077340:CDS
GGAACAATACTTCCATTCCC+CGG 0.605392 1_2:+54229921 None:intergenic
TCAAAATGAAGCAAGGAGCA+AGG 0.605637 1_2:-54230861 Msa0077340:intron
TTCGAAACCGCACAAAACAA+GGG 0.608167 1_2:-54231646 Msa0077340:CDS
TGAATTGTGCGAAATTCCAT+CGG 0.608447 1_2:+54231884 None:intergenic
AGAAGAATCAAAATGAAGCA+AGG 0.613159 1_2:-54230868 Msa0077340:CDS
CAAAATCTCCAAAACTGGGT+CGG 0.613811 1_2:-54230227 Msa0077340:CDS
TGCAGCTAATTCATCTGAAG+GGG 0.619271 1_2:-54230187 Msa0077340:CDS
GTTGCTAGGGAAAATGGTCG+CGG 0.629133 1_2:+54231585 None:intergenic
TCGAAACCGCACAAAACAAG+GGG 0.655229 1_2:-54231645 Msa0077340:CDS
GATCAAAGTGAATGGACAAG+CGG 0.657804 1_2:-54230010 Msa0077340:CDS
ACACCCTTCAGAAAGTTGCA+AGG 0.664952 1_2:+54229900 None:intergenic
TTTGAAGAAGATAACAAGGG+CGG 0.669853 1_2:-54231528 Msa0077340:CDS
CTTTAGGTGGAGGCCCCTCG+TGG 0.681265 1_2:+54230662 None:intergenic
AGAGAGCACAAAGGAATACG+AGG 0.687992 1_2:-54231778 Msa0077340:CDS
GTAGGCTTGACAGTATCTCG+TGG 0.692488 1_2:+54231612 None:intergenic
ACGCGCACAAAGAAGAAAGG+AGG 0.694653 1_2:-54231018 Msa0077340:intron
AAAGAACTGCAACTTCTGTG+AGG 0.704237 1_2:-54231094 Msa0077340:intron
GGTCGGCGAAAGAGCAACAG+CGG 0.709755 1_2:-54230210 Msa0077340:CDS
TAGTTCAGAAGAGAGCACAA+AGG 0.711655 1_2:-54231787 Msa0077340:CDS
AGTGATGTGACTAACGACAA+TGG 0.713243 1_2:-54230102 Msa0077340:CDS
TAACAAGAAACATTCAGACG+AGG 0.732280 1_2:-54231270 Msa0077340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATTTATACTAAG+TGG + chr1_2:54230034-54230053 None:intergenic 10.0%
!! ATTAATTTCTTCAATTAATT+CGG + chr1_2:54232662-54232681 None:intergenic 10.0%
!! TTGTTCAAAAAACAATAAAA+GGG + chr1_2:54229873-54229892 None:intergenic 15.0%
!! TTTGTTCAAAAAACAATAAA+AGG + chr1_2:54229874-54229893 None:intergenic 15.0%
!!! TTTATTGTTTTTTGAACAAA+TGG - chr1_2:54229874-54229893 Msa0077340:three_prime_UTR 15.0%
!! ATTAAATTTATATACACGTT+TGG - chr1_2:54230420-54230439 Msa0077340:intron 15.0%
!! TTAAATTTATATACACGTTT+GGG - chr1_2:54230421-54230440 Msa0077340:intron 15.0%
!!! ATAGTTTTATTCAAAATTAG+AGG - chr1_2:54231779-54231798 Msa0077340:CDS 15.0%
!!! ACTATTTATTTTTCCTATAC+TGG + chr1_2:54229917-54229936 None:intergenic 20.0%
!! ATAAATTTATACTAAGTGGT+TGG + chr1_2:54230030-54230049 None:intergenic 20.0%
!! AAAAGGAAAGTAATCAAATT+GGG + chr1_2:54230163-54230182 None:intergenic 20.0%
!!! TAGTTTTTCTTAACTTAGTT+AGG - chr1_2:54230191-54230210 Msa0077340:CDS 20.0%
!!! TAGGTTTTTTAATCAATCTT+TGG - chr1_2:54230315-54230334 Msa0077340:intron 20.0%
!! TTGAAATAATCTTTCAGAAA+TGG + chr1_2:54230502-54230521 None:intergenic 20.0%
!! AGAAAAACAAAATCTTACAT+AGG + chr1_2:54230616-54230635 None:intergenic 20.0%
!! AAACTATAGCACAAATAAAA+AGG + chr1_2:54231766-54231785 None:intergenic 20.0%
!! CAAAATGACAATGTAATTTA+TGG + chr1_2:54231889-54231908 None:intergenic 20.0%
!!! TTTGACTTCATTTTATCTTT+TGG + chr1_2:54232170-54232189 None:intergenic 20.0%
!! ATTAATATGATCAAAGTGAA+TGG - chr1_2:54232676-54232695 Msa0077340:intron 20.0%
!! ATCTCAAGTTATTTGTAAAA+AGG - chr1_2:54232898-54232917 Msa0077340:intron 20.0%
!!! ATGCAATAGTTTGTTATTAA+GGG - chr1_2:54233044-54233063 Msa0077340:five_prime_UTR 20.0%
!!! TTTTGGATCTGGAATAATAA+TGG + chr1_2:54229718-54229737 None:intergenic 25.0%
! TTGATGCATGAAAATGTAAA+GGG + chr1_2:54229767-54229786 None:intergenic 25.0%
! TTTGATGCATGAAAATGTAA+AGG + chr1_2:54229768-54229787 None:intergenic 25.0%
!! ATTGTTGATGTTTGTTAATC+AGG - chr1_2:54229836-54229855 Msa0077340:three_prime_UTR 25.0%
! GAAAAGGAAAGTAATCAAAT+TGG + chr1_2:54230164-54230183 None:intergenic 25.0%
! GAAAAACTAAAACACAGAAA+AGG + chr1_2:54230180-54230199 None:intergenic 25.0%
! AGAATATTCTCTTATCTTCT+AGG - chr1_2:54230385-54230404 Msa0077340:intron 25.0%
! GAATATTCTCTTATCTTCTA+GGG - chr1_2:54230386-54230405 Msa0077340:intron 25.0%
!!! TTTTATGAAATGGACTGTAT+AGG + chr1_2:54230533-54230552 None:intergenic 25.0%
!! ACTCAAGTGATTTTATGAAA+TGG + chr1_2:54230543-54230562 None:intergenic 25.0%
! AATTAAAGAATGCTTCCAAA+GGG + chr1_2:54230570-54230589 None:intergenic 25.0%
! AAATTAAAGAATGCTTCCAA+AGG + chr1_2:54230571-54230590 None:intergenic 25.0%
!! TTCTTTGTTATATAGTGCAA+TGG - chr1_2:54230730-54230749 Msa0077340:CDS 25.0%
!! TCTTTGTTATATAGTGCAAT+GGG - chr1_2:54230731-54230750 Msa0077340:CDS 25.0%
! TTCAGATATTTGTATCATCA+AGG - chr1_2:54230763-54230782 Msa0077340:intron 25.0%
! ATCTAACCTAAAAAAAAGTG+AGG - chr1_2:54230982-54231001 Msa0077340:intron 25.0%
! TTGTTATCTTCTTCAAAAGT+AGG + chr1_2:54231163-54231182 None:intergenic 25.0%
!!! TACTTTTGAAGAAGATAACA+AGG - chr1_2:54231162-54231181 Msa0077340:intron 25.0%
!!! ACTTTTGAAGAAGATAACAA+GGG - chr1_2:54231163-54231182 Msa0077340:intron 25.0%
! TTATAAACCTTATAGTCGAA+GGG - chr1_2:54231480-54231499 Msa0077340:CDS 25.0%
!!! TTAAGTAGCTTTGTTTCAAT+AGG - chr1_2:54231712-54231731 Msa0077340:CDS 25.0%
!!! TAAGTAGCTTTGTTTCAATA+GGG - chr1_2:54231713-54231732 Msa0077340:CDS 25.0%
!!! TCTAATTTGTTCATCGATTA+AGG - chr1_2:54231936-54231955 Msa0077340:CDS 25.0%
! TAATTGAGTGGTTATCATAT+AGG - chr1_2:54232119-54232138 Msa0077340:intron 25.0%
! AATGACAATGTTAACATGTA+TGG - chr1_2:54232424-54232443 Msa0077340:intron 25.0%
! ACTTCTAATTTATGAGTTTC+CGG - chr1_2:54232754-54232773 Msa0077340:intron 25.0%
!!! AGAAAGTGCTTATAAGTTAA+AGG + chr1_2:54232831-54232850 None:intergenic 25.0%
!!! CATGCAATAGTTTGTTATTA+AGG - chr1_2:54233043-54233062 Msa0077340:five_prime_UTR 25.0%
!!! ATAGTTTGTTATTAAGGGAA+AGG - chr1_2:54233049-54233068 Msa0077340:five_prime_UTR 25.0%
!! TCATAGAGAATCTTATTTCA+GGG + chr1_2:54233084-54233103 None:intergenic 25.0%
!! ATCATAGAGAATCTTATTTC+AGG + chr1_2:54233085-54233104 None:intergenic 25.0%
! TGAAATAAGATTCTCTATGA+TGG - chr1_2:54233084-54233103 Msa0077340:five_prime_UTR 25.0%
TGATGAGTTTGTGAATTACT+AGG + chr1_2:54229664-54229683 None:intergenic 30.0%
!! ATGACTCACATTTAGAGTTT+TGG + chr1_2:54229735-54229754 None:intergenic 30.0%
CTTAGAAGGAAAGAAAAAAG+TGG + chr1_2:54229793-54229812 None:intergenic 30.0%
TTTGTTAATCAGGTTCAGTT+TGG - chr1_2:54229846-54229865 Msa0077340:three_prime_UTR 30.0%
AACAATATGATTAACCGACA+AGG + chr1_2:54230084-54230103 None:intergenic 30.0%
! CTTAGTTAGGTAGACAATTT+TGG - chr1_2:54230204-54230223 Msa0077340:CDS 30.0%
! GCTAACAACTTCAATACTTT+TGG - chr1_2:54230272-54230291 Msa0077340:intron 30.0%
AAAAAACCTAAGTAATGAGC+AGG + chr1_2:54230305-54230324 None:intergenic 30.0%
! AGTTGCTTTCAACTAAAAAG+TGG + chr1_2:54230351-54230370 None:intergenic 30.0%
CTTACATAGGTACAAATTCA+AGG + chr1_2:54230603-54230622 None:intergenic 30.0%
CATATTGTGATTATCAGTTC+CGG + chr1_2:54230846-54230865 None:intergenic 30.0%
TACAACAGAAGTTTCTGTTA+AGG - chr1_2:54230949-54230968 Msa0077340:intron 30.0%
!!! ACTTCTCCTCACTTTTTTTT+AGG + chr1_2:54230991-54231010 None:intergenic 30.0%
TAATACGCTTAAACAGAATC+AGG - chr1_2:54231231-54231250 Msa0077340:intron 30.0%
AATAGATTAGACAATGAAGG+AGG + chr1_2:54231281-54231300 None:intergenic 30.0%
AGCAATAGATTAGACAATGA+AGG + chr1_2:54231284-54231303 None:intergenic 30.0%
ATCTATTGCTGAACTGTTTA+TGG - chr1_2:54231294-54231313 Msa0077340:CDS 30.0%
! TTCTTGTTATCAGGTTTCAA+CGG + chr1_2:54231413-54231432 None:intergenic 30.0%
! TCTGAATGTTTCTTGTTATC+AGG + chr1_2:54231422-54231441 None:intergenic 30.0%
CTTATAAACCTTATAGTCGA+AGG - chr1_2:54231479-54231498 Msa0077340:CDS 30.0%
AGAAGAATCAAAATGAAGCA+AGG - chr1_2:54231826-54231845 Msa0077340:CDS 30.0%
AGAGATTTCTTCATTATCTC+AGG - chr1_2:54231861-54231880 Msa0077340:CDS 30.0%
CAAATTAGAGTGAGAAAACT+AGG + chr1_2:54231925-54231944 None:intergenic 30.0%
! TTAAGTTGTTTATCCCAACA+GGG + chr1_2:54232102-54232121 None:intergenic 30.0%
! ATTAAGTTGTTTATCCCAAC+AGG + chr1_2:54232103-54232122 None:intergenic 30.0%
GGATAAACAACTTAATTGAG+TGG - chr1_2:54232107-54232126 Msa0077340:intron 30.0%
TCAGACATGATACTGTTATA+AGG + chr1_2:54232286-54232305 None:intergenic 30.0%
TTATAACAGTATCATGTCTG+AGG - chr1_2:54232285-54232304 Msa0077340:intron 30.0%
AATCTCATTGAAGACTTTAC+TGG + chr1_2:54232726-54232745 None:intergenic 30.0%
CTTCTAATTTATGAGTTTCC+GGG - chr1_2:54232755-54232774 Msa0077340:intron 30.0%
TTCTAATTTATGAGTTTCCG+GGG - chr1_2:54232756-54232775 Msa0077340:intron 30.0%
AAGGAAATTCTATTGCTCAT+AGG - chr1_2:54232917-54232936 Msa0077340:intron 30.0%
! GTCACATTGTTTGAAGTTAT+TGG - chr1_2:54232979-54232998 Msa0077340:five_prime_UTR 30.0%
AATAATGATGTTCAGTGAAC+AGG - chr1_2:54233004-54233023 Msa0077340:five_prime_UTR 30.0%
!!! CACATTTAGAGTTTTGGATC+TGG + chr1_2:54229729-54229748 None:intergenic 35.0%
AGAACATGCTAGATCTTAGA+AGG + chr1_2:54229807-54229826 None:intergenic 35.0%
TTGAACAAATGGTTCTTGCA+TGG - chr1_2:54229885-54229904 Msa0077340:three_prime_UTR 35.0%
TCTAGTGTATGATACCTTGT+CGG - chr1_2:54230067-54230086 Msa0077340:CDS 35.0%
GGAAAGTAATCAAATTGGGT+TGG + chr1_2:54230159-54230178 None:intergenic 35.0%
ATTTGTCCTGCTCATTACTT+AGG - chr1_2:54230296-54230315 Msa0077340:intron 35.0%
AACTAAAAAGTGGAACCATG+GGG + chr1_2:54230341-54230360 None:intergenic 35.0%
CAACTAAAAAGTGGAACCAT+GGG + chr1_2:54230342-54230361 None:intergenic 35.0%
TCAACTAAAAAGTGGAACCA+TGG + chr1_2:54230343-54230362 None:intergenic 35.0%
ATCACTTGAGTAAAACCCTT+TGG - chr1_2:54230552-54230571 Msa0077340:intron 35.0%
TGAATTGTGCGAAATTCCAT+CGG + chr1_2:54230813-54230832 None:intergenic 35.0%
CGGAACTGATAATCACAATA+TGG - chr1_2:54230844-54230863 Msa0077340:intron 35.0%
TTTGAAGAAGATAACAAGGG+CGG - chr1_2:54231166-54231185 Msa0077340:intron 35.0%
GGAGGAAGCAAATTCAAAAT+CGG + chr1_2:54231263-54231282 None:intergenic 35.0%
TAACAAGAAACATTCAGACG+AGG - chr1_2:54231424-54231443 Msa0077340:intron 35.0%
ATTCATGTTCAGTTGCTTCT+GGG - chr1_2:54231450-54231469 Msa0077340:intron 35.0%
AGAAGTTGCAGTTCTTTACA+TGG + chr1_2:54231597-54231616 None:intergenic 35.0%
! GGTTTTCTTCCCAAATTGAT+CGG - chr1_2:54231734-54231753 Msa0077340:CDS 35.0%
ATCGATTAAGGAAGAGAAAG+AGG - chr1_2:54231948-54231967 Msa0077340:CDS 35.0%
TTCTTCAAGTCAACTTTAGG+TGG + chr1_2:54232048-54232067 None:intergenic 35.0%
!! ACCTAAAGTTGACTTGAAGA+AGG - chr1_2:54232047-54232066 Msa0077340:intron 35.0%
ACCTTCTTCAAGTCAACTTT+AGG + chr1_2:54232051-54232070 None:intergenic 35.0%
! GACTTGAAGAAGGTATGTAA+TGG - chr1_2:54232057-54232076 Msa0077340:intron 35.0%
TACTTAAACTTATGCCCTGT+TGG - chr1_2:54232085-54232104 Msa0077340:intron 35.0%
ACTTAAACTTATGCCCTGTT+GGG - chr1_2:54232086-54232105 Msa0077340:intron 35.0%
!! TTCAATTAATTCGGTGTGCT+CGG + chr1_2:54232653-54232672 None:intergenic 35.0%
ACAAATGGTTCTTGCATGGT+TGG - chr1_2:54229889-54229908 Msa0077340:three_prime_UTR 40.0%
TTAATCAATCTTTGGCCCCA+TGG - chr1_2:54230323-54230342 Msa0077340:intron 40.0%
GAATAGACTACAACACGATC+TGG + chr1_2:54230791-54230810 None:intergenic 40.0%
GATGGAATTTCGCACAATTC+AGG - chr1_2:54230812-54230831 Msa0077340:intron 40.0%
CACAATTCAGGTCATGAAAC+CGG - chr1_2:54230824-54230843 Msa0077340:intron 40.0%
! TAGTTCAGAAGAGAGCACAA+AGG - chr1_2:54230907-54230926 Msa0077340:CDS 40.0%
AGAAGTTTCTGTTAAGGCCT+CGG - chr1_2:54230955-54230974 Msa0077340:intron 40.0%
!!! TTTTAGGTTAGATACGTCCG+AGG + chr1_2:54230975-54230994 None:intergenic 40.0%
! AAGTTGACGCCAGATTTTGA+GGG - chr1_2:54231007-54231026 Msa0077340:intron 40.0%
TTGAGAACACCCTCAAAATC+TGG + chr1_2:54231019-54231038 None:intergenic 40.0%
TTCGAAACCGCACAAAACAA+GGG - chr1_2:54231048-54231067 Msa0077340:CDS 40.0%
!!! TGATTACCCCTTGTTTTGTG+CGG + chr1_2:54231058-54231077 None:intergenic 40.0%
CTTTCAGTTGCTAGGGAAAA+TGG + chr1_2:54231118-54231137 None:intergenic 40.0%
! CATTTTCCCTAGCAACTGAA+AGG - chr1_2:54231116-54231135 Msa0077340:intron 40.0%
TAAAGGAGACTTCAACTGCA+AGG + chr1_2:54231378-54231397 None:intergenic 40.0%
! TGAAGTCTCCTTTAGTTCCA+AGG - chr1_2:54231384-54231403 Msa0077340:intron 40.0%
AACGGTTTCCTTGGAACTAA+AGG + chr1_2:54231395-54231414 None:intergenic 40.0%
GATTCATGTTCAGTTGCTTC+TGG - chr1_2:54231449-54231468 Msa0077340:intron 40.0%
TTTGACACCCTTCGACTATA+AGG + chr1_2:54231490-54231509 None:intergenic 40.0%
CAGTTCTTTACATGGTCAAG+GGG + chr1_2:54231589-54231608 None:intergenic 40.0%
GCAGTTCTTTACATGGTCAA+GGG + chr1_2:54231590-54231609 None:intergenic 40.0%
TGCAGTTCTTTACATGGTCA+AGG + chr1_2:54231591-54231610 None:intergenic 40.0%
AAAGAACTGCAACTTCTGTG+AGG - chr1_2:54231600-54231619 Msa0077340:CDS 40.0%
! AGGAATGCACCGATCAATTT+GGG + chr1_2:54231746-54231765 None:intergenic 40.0%
! AAGGAATGCACCGATCAATT+TGG + chr1_2:54231747-54231766 None:intergenic 40.0%
AGAGGAAAAGCAACAAGCAA+TGG - chr1_2:54231797-54231816 Msa0077340:CDS 40.0%
TCAAAATGAAGCAAGGAGCA+AGG - chr1_2:54231833-54231852 Msa0077340:CDS 40.0%
TTCAAGTCAACTTTAGGTGG+AGG + chr1_2:54232045-54232064 None:intergenic 40.0%
! AACAGTCTCACAAGTGCTTT+TGG - chr1_2:54232224-54232243 Msa0077340:intron 40.0%
! TTTGGAGATTTTGCACGTGT+GGG + chr1_2:54232460-54232479 None:intergenic 40.0%
!! TTTTGGAGATTTTGCACGTG+TGG + chr1_2:54232461-54232480 None:intergenic 40.0%
ACGTGCAAAATCTCCAAAAC+TGG - chr1_2:54232462-54232481 Msa0077340:intron 40.0%
CGTGCAAAATCTCCAAAACT+GGG - chr1_2:54232463-54232482 Msa0077340:intron 40.0%
CAAAATCTCCAAAACTGGGT+CGG - chr1_2:54232467-54232486 Msa0077340:intron 40.0%
GTGCAGCTAATTCATCTGAA+GGG - chr1_2:54232506-54232525 Msa0077340:intron 40.0%
TGCAGCTAATTCATCTGAAG+GGG - chr1_2:54232507-54232526 Msa0077340:intron 40.0%
TCTGAAGGGGTCAAAGAAAA+AGG - chr1_2:54232520-54232539 Msa0077340:intron 40.0%
CACATCACTCAAGTTACAAC+TGG + chr1_2:54232581-54232600 None:intergenic 40.0%
AGTGATGTGACTAACGACAA+TGG - chr1_2:54232592-54232611 Msa0077340:intron 40.0%
GATCAAAGTGAATGGACAAG+CGG - chr1_2:54232684-54232703 Msa0077340:intron 40.0%
ATCAAAGTGAATGGACAAGC+GGG - chr1_2:54232685-54232704 Msa0077340:intron 40.0%
ATTTATGAGTTTCCGGGGAA+TGG - chr1_2:54232761-54232780 Msa0077340:intron 40.0%
TGTTCCTTGCAACTTTCTGA+AGG - chr1_2:54232790-54232809 Msa0077340:intron 40.0%
GTTCCTTGCAACTTTCTGAA+GGG - chr1_2:54232791-54232810 Msa0077340:intron 40.0%
TGCATGGTTGGATCCAGTAT+AGG - chr1_2:54229901-54229920 Msa0077340:three_prime_UTR 45.0%
TATACACGTTTGGGCATGCT+TGG - chr1_2:54230430-54230449 Msa0077340:intron 45.0%
CGTGTTGTAGTCTATTCCGA+TGG - chr1_2:54230794-54230813 Msa0077340:intron 45.0%
! AGAGAGCACAAAGGAATACG+AGG - chr1_2:54230916-54230935 Msa0077340:intron 45.0%
CACAAAGGAATACGAGGTGA+AGG - chr1_2:54230922-54230941 Msa0077340:intron 45.0%
! GAAGTTGACGCCAGATTTTG+AGG - chr1_2:54231006-54231025 Msa0077340:intron 45.0%
GTTCGAAACCGCACAAAACA+AGG - chr1_2:54231047-54231066 Msa0077340:CDS 45.0%
TCGAAACCGCACAAAACAAG+GGG - chr1_2:54231049-54231068 Msa0077340:CDS 45.0%
GAAGATAACAAGGGCGGTAA+TGG - chr1_2:54231172-54231191 Msa0077340:intron 45.0%
TCAGGTTTCAACGGTTTCCT+TGG + chr1_2:54231404-54231423 None:intergenic 45.0%
! TGTGAGGTCTTTCAAGTCCA+GGG - chr1_2:54231616-54231635 Msa0077340:CDS 45.0%
TTGCTTCTGCTCCAAGCTTT+CGG - chr1_2:54231645-54231664 Msa0077340:CDS 45.0%
TGAACGCGCACAAAGAAGAA+AGG - chr1_2:54231673-54231692 Msa0077340:CDS 45.0%
AGGAAGCCATCAAACAGTTG+AGG - chr1_2:54231968-54231987 Msa0077340:intron 45.0%
AAGCCATCAAACAGTTGAGG+AGG - chr1_2:54231971-54231990 Msa0077340:intron 45.0%
ACTCCTCCTCAACTGTTTGA+TGG + chr1_2:54231977-54231996 None:intergenic 45.0%
CGTGGTAAAAGCTTGGCATA+GGG + chr1_2:54232017-54232036 None:intergenic 45.0%
TCGTGGTAAAAGCTTGGCAT+AGG + chr1_2:54232018-54232037 None:intergenic 45.0%
! TATGCCAAGCTTTTACCACG+AGG - chr1_2:54232017-54232036 Msa0077340:intron 45.0%
! ATGCCAAGCTTTTACCACGA+GGG - chr1_2:54232018-54232037 Msa0077340:intron 45.0%
GGTGCAGCTAATTCATCTGA+AGG - chr1_2:54232505-54232524 Msa0077340:intron 45.0%
AGGGGTCAAAGAAAAAGGAG+CGG - chr1_2:54232525-54232544 Msa0077340:intron 45.0%
TGTGACTAACGACAATGGCT+TGG - chr1_2:54232597-54232616 Msa0077340:intron 45.0%
! ACTAACGACAATGGCTTGGA+TGG - chr1_2:54232601-54232620 Msa0077340:intron 45.0%
GGAACAATACTTCCATTCCC+CGG + chr1_2:54232776-54232795 None:intergenic 45.0%
ACACCCTTCAGAAAGTTGCA+AGG + chr1_2:54232797-54232816 None:intergenic 45.0%
TTTCTGTCTGCCTCAACTTC+AGG - chr1_2:54232956-54232975 Msa0077340:intron 45.0%
TTCTGTCTGCCTCAACTTCA+GGG - chr1_2:54232957-54232976 Msa0077340:intron 45.0%
ACAATGTGACCCTGAAGTTG+AGG + chr1_2:54232969-54232988 None:intergenic 45.0%
GTAGGCTTGACAGTATCTCG+TGG + chr1_2:54231085-54231104 None:intergenic 50.0%
GAAAATGGTCGCGGAACTGT+AGG + chr1_2:54231103-54231122 None:intergenic 50.0%
GTTGCTAGGGAAAATGGTCG+CGG + chr1_2:54231112-54231131 None:intergenic 50.0%
AGCACGCCTTTCAGTTGCTA+GGG + chr1_2:54231125-54231144 None:intergenic 50.0%
TAGCACGCCTTTCAGTTGCT+AGG + chr1_2:54231126-54231145 None:intergenic 50.0%
! CTGTGAGGTCTTTCAAGTCC+AGG - chr1_2:54231615-54231634 Msa0077340:CDS 50.0%
ACGCGCACAAAGAAGAAAGG+AGG - chr1_2:54231676-54231695 Msa0077340:CDS 50.0%
! TGCCAAGCTTTTACCACGAG+GGG - chr1_2:54232019-54232038 Msa0077340:intron 50.0%
AGCAGAAGCAACAGTTGCCC+TGG + chr1_2:54231636-54231655 None:intergenic 55.0%
CGTTCAGTCGACCGAAAGCT+TGG + chr1_2:54231659-54231678 None:intergenic 55.0%
! GGAGATTTTGCACGTGTGGG+TGG + chr1_2:54232457-54232476 None:intergenic 55.0%
! CTCTTTCGCCGACCCAGTTT+TGG + chr1_2:54232478-54232497 None:intergenic 55.0%
GGCCCCTCGTGGTAAAAGCT+TGG + chr1_2:54232024-54232043 None:intergenic 60.0%
TTGCACGTGTGGGTGGTAGC+TGG + chr1_2:54232450-54232469 None:intergenic 60.0%
GGTCGGCGAAAGAGCAACAG+CGG - chr1_2:54232484-54232503 Msa0077340:intron 60.0%
CTTTAGGTGGAGGCCCCTCG+TGG + chr1_2:54232035-54232054 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54229608 54233108 54229608 ID=Msa0077340;Name=Msa0077340
chr1_2 mRNA 54229608 54233108 54229608 ID=Msa0077340-mRNA-1;Parent=Msa0077340;Name=Msa0077340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=142|1|1|1|0.83|0.71|7|379|382
chr1_2 exon 54229608 54230265 54229608 ID=Msa0077340-mRNA-1:exon:16745;Parent=Msa0077340-mRNA-1
chr1_2 exon 54230648 54230758 54230648 ID=Msa0077340-mRNA-1:exon:16744;Parent=Msa0077340-mRNA-1
chr1_2 exon 54230862 54230933 54230862 ID=Msa0077340-mRNA-1:exon:16743;Parent=Msa0077340-mRNA-1
chr1_2 exon 54231019 54231112 54231019 ID=Msa0077340-mRNA-1:exon:16742;Parent=Msa0077340-mRNA-1
chr1_2 exon 54231245 54231333 54231245 ID=Msa0077340-mRNA-1:exon:16741;Parent=Msa0077340-mRNA-1
chr1_2 exon 54231464 54231971 54231464 ID=Msa0077340-mRNA-1:exon:16740;Parent=Msa0077340-mRNA-1
chr1_2 exon 54232971 54233108 54232971 ID=Msa0077340-mRNA-1:exon:16739;Parent=Msa0077340-mRNA-1
chr1_2 five_prime_UTR 54232971 54233108 54232971 ID=Msa0077340-mRNA-1:five_prime_utr;Parent=Msa0077340-mRNA-1
chr1_2 five_prime_UTR 54231968 54231971 54231968 ID=Msa0077340-mRNA-1:five_prime_utr;Parent=Msa0077340-mRNA-1
chr1_2 CDS 54231464 54231967 54231464 ID=Msa0077340-mRNA-1:cds;Parent=Msa0077340-mRNA-1
chr1_2 CDS 54231245 54231333 54231245 ID=Msa0077340-mRNA-1:cds;Parent=Msa0077340-mRNA-1
chr1_2 CDS 54231019 54231112 54231019 ID=Msa0077340-mRNA-1:cds;Parent=Msa0077340-mRNA-1
chr1_2 CDS 54230862 54230933 54230862 ID=Msa0077340-mRNA-1:cds;Parent=Msa0077340-mRNA-1
chr1_2 CDS 54230648 54230758 54230648 ID=Msa0077340-mRNA-1:cds;Parent=Msa0077340-mRNA-1
chr1_2 CDS 54229987 54230265 54229987 ID=Msa0077340-mRNA-1:cds;Parent=Msa0077340-mRNA-1
chr1_2 three_prime_UTR 54229608 54229986 54229608 ID=Msa0077340-mRNA-1:three_prime_utr;Parent=Msa0077340-mRNA-1
Gene Sequence

>Msa0077340

ATGGGAATAGAAGATTCAGATATTTGTATCATCAAGGAGCCAGATCGTGTTGTAGTCTATTCCGATGGAATTTCGCACAATTCAGGTCATGAAACCGGAACTGATAATCACAATATGGCAGAGTCTTATGAGCATATCAACGAGACTACTGAACATCATAGTTCAGAAGAGAGCACAAAGGAATACGAGGTGAAGGAATGTACAACAGAAGTTTCTGTTAAGGCCTCGGACGTATCTAACCTAAAAAAAAGTGAGGAGAAGTTGACGCCAGATTTTGAGGGTGTTCTCAATGTGAAAAGTTCGAAACCGCACAAAACAAGGGGTAATCAAAAGCCACGAGATACTGTCAAGCCTACAGTTCCGCGACCATTTTCCCTAGCAACTGAAAGGCGTGCTACAATTGTAACTCGTCCTACTTTTGAAGAAGATAACAAGGGCGGTAATGGAAGAAAATCTGTAAATAAAAAGAATGTGCTGTCTTCTAATACGCTTAAACAGAATCAGTTGAAGTCTCCTTTAGTTCCAAGGAAACCGTTGAAACCTGATAACAAGAAACATTCAGACGAGGACGATTCATGTTCAGTTGCTTCTGGAACTGCAACTTCTGTGAGGTCTTTCAAGTCCAGGGCAACTGTTGCTTCTGCTCCAAGCTTTCGGTCGACTGAACGCGCACAAAGAAGAAAGGAGTTTTATTCAAAATTAGAGGAAAAGCAACAAGCAATGGAAGCTGAGAAGAATCAAAATGAAGCAAGGAGCAAGGAAGAGAAAGAGGAAGCCATCAAACAGTTGAGGAGGAGTTTAAAGTTTAAAGCAAGCCCTATGCCAAGCTTTTACCACGAGGGGCCTCCACCTAAAGTTGACTTGAAGAAGCTACCACCCACACGTGCAAAATCTCCAAAACTGGGTCGGCGAAAGAGCAACAGCGGTGCAGCTAATTCATCTGAAGGGGTCAAAGAAAAAGGAGCGGCTGCTCAGAGAAAGCATCGCACATCGAACACCAGTTGTAACTTGAGTGATGTGACTAACGACAATGGCTTGGATGGTCTCAAAAATAAGACTGAAAACAAGACCGAGCACACCGAATTAATTGAAGAAATTAATATGATCAAAGTGAATGGACAAGCGGGCATAGAGATCAGCAGCCAGTAA

Protein sequence

>Msa0077340

MGIEDSDICIIKEPDRVVVYSDGISHNSGHETGTDNHNMAESYEHINETTEHHSSEESTKEYEVKECTTEVSVKASDVSNLKKSEEKLTPDFEGVLNVKSSKPHKTRGNQKPRDTVKPTVPRPFSLATERRATIVTRPTFEEDNKGGNGRKSVNKKNVLSSNTLKQNQLKSPLVPRKPLKPDNKKHSDEDDSCSVASGTATSVRSFKSRATVASAPSFRSTERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPSFYHEGPPPKVDLKKLPPTRAKSPKLGRRKSNSGAANSSEGVKEKGAAAQRKHRTSNTSCNLSDVTNDNGLDGLKNKTENKTEHTELIEEINMIKVNGQAGIEISSQ*