AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1405460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405460 MtrunA17_Chr1g0187121 93.995 383 22 1 1 382 1 383 0.0 734
Msa1405460 MtrunA17_Chr1g0190551 43.023 258 133 6 61 313 45 293 9.70e-45 158
Msa1405460 MtrunA17_Chr7g0274281 58.993 139 53 1 179 317 178 312 1.55e-33 128
Msa1405460 MtrunA17_Chr7g0267791 54.198 131 54 3 185 315 213 337 4.78e-31 122
Msa1405460 MtrunA17_Chr1g0149361 53.913 115 48 2 217 331 229 338 1.00e-29 119
Msa1405460 MtrunA17_Chr3g0137761 60.870 92 36 0 217 308 212 303 7.86e-29 116
Msa1405460 MtrunA17_Chr1g0176611 60.194 103 39 2 213 315 231 331 1.01e-27 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405460 AT3G23090.1 49.701 334 128 8 7 333 2 302 8.05e-83 256
Msa1405460 AT3G23090.4 49.701 334 128 8 7 333 38 338 1.86e-82 256
Msa1405460 AT3G23090.5 49.401 334 129 8 7 333 3 303 6.00e-82 254
Msa1405460 AT3G23090.2 49.112 338 128 9 7 333 2 306 3.51e-81 252
Msa1405460 AT3G23090.3 49.112 338 128 9 7 333 38 342 6.98e-81 253
Msa1405460 AT1G54460.1 48.551 276 106 11 63 335 40 282 3.27e-61 201
Msa1405460 AT3G04630.3 60.993 141 52 2 168 305 82 222 3.09e-50 171
Msa1405460 AT3G04630.1 60.993 141 52 2 168 305 78 218 3.15e-50 171
Msa1405460 AT3G04630.2 62.222 135 49 1 173 305 83 217 5.16e-50 170
Msa1405460 AT5G28646.2 54.194 155 62 3 162 314 40 187 3.86e-41 144
Msa1405460 AT5G28646.1 54.194 155 62 3 162 314 40 187 3.86e-41 144
Msa1405460 AT5G28646.3 58.647 133 49 2 184 314 55 183 1.65e-40 142
Msa1405460 AT2G35880.3 57.143 133 54 2 178 310 210 339 2.94e-33 129
Msa1405460 AT2G35880.2 57.143 133 54 2 178 310 210 339 2.94e-33 129
Msa1405460 AT2G35880.1 57.143 133 54 2 178 310 210 339 2.94e-33 129
Msa1405460 AT4G32330.1 54.098 122 56 0 189 310 180 301 7.90e-31 122
Msa1405460 AT4G32330.4 54.098 122 56 0 189 310 180 301 7.90e-31 122
Msa1405460 AT4G32330.3 54.098 122 56 0 189 310 180 301 7.90e-31 122
Msa1405460 AT4G32330.2 61.702 94 36 0 217 310 207 300 1.83e-30 121
Msa1405460 AT2G25480.2 58.416 101 41 1 217 317 184 283 1.81e-27 112
Msa1405460 AT2G25480.1 58.416 101 41 1 217 317 183 282 1.86e-27 112
Msa1405460 AT1G70950.1 50.617 81 40 0 218 298 330 410 4.05e-16 80.1

Find 103 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGCAATAGTTTGTTATTA+AGG 0.161776 tig0023138:+53583 Msa1405460:three_prime_UTR
GTCACATTGTTTGAAGTTAT+TGG 0.185251 tig0023138:+53519 Msa1405460:three_prime_UTR
ATCTCAAGTTATTTGTAAAA+AGG 0.213581 tig0023138:+53438 Msa1405460:three_prime_UTR
GATTCATGTTCAGTTGCTTC+TGG 0.221500 tig0023138:+51990 Msa1405460:CDS
TTTCTGTCTGCCTCAACTTC+AGG 0.221974 tig0023138:+53496 Msa1405460:three_prime_UTR
CTCTTTCGCCGACCCAGTTT+TGG 0.233302 tig0023138:-53015 None:intergenic
TCTGAATGTTTCTTGTTATC+AGG 0.235516 tig0023138:-51960 None:intergenic
ATGACTCACATTTAGAGTTT+TGG 0.250804 tig0023138:-50273 None:intergenic
AGAAAGTGCTTATAAGTTAA+AGG 0.253991 tig0023138:-53368 None:intergenic
ATCATAGAGAATCTTATTTC+AGG 0.276186 tig0023138:-53622 None:intergenic
ACTTCTAATTTATGAGTTTC+CGG 0.286282 tig0023138:+53294 Msa1405460:three_prime_UTR
GATGGAATTTCGCACAATTC+AGG 0.294711 tig0023138:+51353 Msa1405460:CDS
ACGTGCAAAATCTCCAAAAC+TGG 0.305226 tig0023138:+53002 Msa1405460:CDS
ATGCAATAGTTTGTTATTAA+GGG 0.313028 tig0023138:+53584 Msa1405460:three_prime_UTR
ATTAATTTCTTCAATTAATT+CGG 0.315412 tig0023138:-53199 None:intergenic
CTTTCAGTTGCTAGGGAAAA+TGG 0.316077 tig0023138:-51656 None:intergenic
AATCTCATTGAAGACTTTAC+TGG 0.317150 tig0023138:-53263 None:intergenic
ACTCCTCCTCAACTGTTTGA+TGG 0.328938 tig0023138:-52514 None:intergenic
TCTGAAGGGGTCAAAGAAAA+AGG 0.336391 tig0023138:+53060 Msa1405460:CDS
TTGCTTCTGCTCCAAGCTTT+CGG 0.336692 tig0023138:+52185 Msa1405460:CDS
ACCTTCTTCAAGTCAACTTT+AGG 0.339340 tig0023138:-52588 None:intergenic
CTTCTAATTTATGAGTTTCC+GGG 0.356248 tig0023138:+53295 Msa1405460:three_prime_UTR
TTCTGTCTGCCTCAACTTCA+GGG 0.362550 tig0023138:+53497 Msa1405460:three_prime_UTR
CATATTGTGATTATCAGTTC+CGG 0.379451 tig0023138:-51384 None:intergenic
CGGAACTGATAATCACAATA+TGG 0.387299 tig0023138:+51385 Msa1405460:CDS
AACGGTTTCCTTGGAACTAA+AGG 0.390764 tig0023138:-51933 None:intergenic
AATAATGATGTTCAGTGAAC+AGG 0.391655 tig0023138:+53544 Msa1405460:three_prime_UTR
ATTCATGTTCAGTTGCTTCT+GGG 0.401381 tig0023138:+51991 Msa1405460:CDS
TTGTTATCTTCTTCAAAAGT+AGG 0.404232 tig0023138:-51701 None:intergenic
TTGAGAACACCCTCAAAATC+TGG 0.409193 tig0023138:-51557 None:intergenic
TTCAATTAATTCGGTGTGCT+CGG 0.412792 tig0023138:-53190 None:intergenic
GAAGATAACAAGGGCGGTAA+TGG 0.429080 tig0023138:+51713 Msa1405460:CDS
TAATACGCTTAAACAGAATC+AGG 0.429313 tig0023138:+51772 Msa1405460:CDS
CTGTGAGGTCTTTCAAGTCC+AGG 0.430512 tig0023138:+52155 Msa1405460:CDS
TCATAGAGAATCTTATTTCA+GGG 0.431405 tig0023138:-53621 None:intergenic
TGATGAGTTTGTGAATTACT+AGG 0.440371 tig0023138:-50202 None:intergenic
TGAAATAAGATTCTCTATGA+TGG 0.444022 tig0023138:+53624 Msa1405460:three_prime_UTR
AAGGAAATTCTATTGCTCAT+AGG 0.446691 tig0023138:+53457 Msa1405460:three_prime_UTR
TCAGGTTTCAACGGTTTCCT+TGG 0.446814 tig0023138:-51942 None:intergenic
CACAATTCAGGTCATGAAAC+CGG 0.449746 tig0023138:+51365 Msa1405460:CDS
TCTTTGTTATATAGTGCAAT+GGG 0.450750 tig0023138:+51272 Msa1405460:intron
AGAAGTTTCTGTTAAGGCCT+CGG 0.454828 tig0023138:+51496 Msa1405460:CDS
TTCTTTGTTATATAGTGCAA+TGG 0.455351 tig0023138:+51271 Msa1405460:intron
ATTTATGAGTTTCCGGGGAA+TGG 0.455619 tig0023138:+53301 Msa1405460:three_prime_UTR
TGTTCCTTGCAACTTTCTGA+AGG 0.459969 tig0023138:+53330 Msa1405460:three_prime_UTR
CACATCACTCAAGTTACAAC+TGG 0.463926 tig0023138:-53118 None:intergenic
TACAACAGAAGTTTCTGTTA+AGG 0.465193 tig0023138:+51490 Msa1405460:CDS
CGTTCAGTCGACCGAAAGCT+TGG 0.469154 tig0023138:-52196 None:intergenic
ATTAATATGATCAAAGTGAA+TGG 0.469665 tig0023138:+53216 Msa1405460:CDS
TTCAAGTCAACTTTAGGTGG+AGG 0.483139 tig0023138:-52582 None:intergenic
TTCAGATATTTGTATCATCA+AGG 0.486869 tig0023138:+51304 Msa1405460:CDS
ATCGATTAAGGAAGAGAAAG+AGG 0.493171 tig0023138:+52488 Msa1405460:intron
TGAAGTCTCCTTTAGTTCCA+AGG 0.494501 tig0023138:+51925 Msa1405460:CDS
ATAGTTTGTTATTAAGGGAA+AGG 0.495055 tig0023138:+53589 Msa1405460:three_prime_UTR
TTCTTCAAGTCAACTTTAGG+TGG 0.500721 tig0023138:-52585 None:intergenic
GTTCCTTGCAACTTTCTGAA+GGG 0.511117 tig0023138:+53331 Msa1405460:three_prime_UTR
AGCAGAAGCAACAGTTGCCC+TGG 0.512471 tig0023138:-52173 None:intergenic
GAATAGACTACAACACGATC+TGG 0.520100 tig0023138:-51329 None:intergenic
GTTCGAAACCGCACAAAACA+AGG 0.521164 tig0023138:+51588 Msa1405460:CDS
TCGTGGTAAAAGCTTGGCAT+AGG 0.526747 tig0023138:-52555 None:intergenic
AGCACGCCTTTCAGTTGCTA+GGG 0.527177 tig0023138:-51663 None:intergenic
GAAAATGGTCGCGGAACTGT+AGG 0.532713 tig0023138:-51641 None:intergenic
GGCCCCTCGTGGTAAAAGCT+TGG 0.537816 tig0023138:-52561 None:intergenic
GTGCAGCTAATTCATCTGAA+GGG 0.542207 tig0023138:+53046 Msa1405460:CDS
TAGCACGCCTTTCAGTTGCT+AGG 0.543009 tig0023138:-51664 None:intergenic
TGTGAGGTCTTTCAAGTCCA+GGG 0.549601 tig0023138:+52156 Msa1405460:CDS
ACTAACGACAATGGCTTGGA+TGG 0.551118 tig0023138:+53141 Msa1405460:CDS
TTCTTGTTATCAGGTTTCAA+CGG 0.554280 tig0023138:-51951 None:intergenic
CGTGGTAAAAGCTTGGCATA+GGG 0.555406 tig0023138:-52554 None:intergenic
AGAGGAAAAGCAACAAGCAA+TGG 0.560439 tig0023138:+52337 Msa1405460:CDS
GGTGCAGCTAATTCATCTGA+AGG 0.565625 tig0023138:+53045 Msa1405460:CDS
TGAACGCGCACAAAGAAGAA+AGG 0.565933 tig0023138:+52213 Msa1405460:CDS
CACAAAGGAATACGAGGTGA+AGG 0.571994 tig0023138:+51463 Msa1405460:CDS
ACCTAAAGTTGACTTGAAGA+AGG 0.572341 tig0023138:+52587 Msa1405460:CDS
TGTGACTAACGACAATGGCT+TGG 0.576886 tig0023138:+53137 Msa1405460:CDS
ATCAAAGTGAATGGACAAGC+GGG 0.577317 tig0023138:+53225 Msa1405460:CDS
CGTGCAAAATCTCCAAAACT+GGG 0.584227 tig0023138:+53003 Msa1405460:CDS
AAGCCATCAAACAGTTGAGG+AGG 0.591790 tig0023138:+52511 Msa1405460:CDS
TTCTAATTTATGAGTTTCCG+GGG 0.592283 tig0023138:+53296 Msa1405460:three_prime_UTR
ACAATGTGACCCTGAAGTTG+AGG 0.592428 tig0023138:-53506 None:intergenic
CGTGTTGTAGTCTATTCCGA+TGG 0.596110 tig0023138:+51335 Msa1405460:CDS
AGGAAGCCATCAAACAGTTG+AGG 0.603449 tig0023138:+52508 Msa1405460:CDS
GGAACAATACTTCCATTCCC+CGG 0.605392 tig0023138:-53313 None:intergenic
TCAAAATGAAGCAAGGAGCA+AGG 0.605637 tig0023138:+52373 Msa1405460:CDS
TTCGAAACCGCACAAAACAA+GGG 0.608167 tig0023138:+51589 Msa1405460:CDS
TGAATTGTGCGAAATTCCAT+CGG 0.608447 tig0023138:-51351 None:intergenic
AGAAGAATCAAAATGAAGCA+AGG 0.613159 tig0023138:+52366 Msa1405460:CDS
CAAAATCTCCAAAACTGGGT+CGG 0.613811 tig0023138:+53007 Msa1405460:CDS
TGCAGCTAATTCATCTGAAG+GGG 0.619271 tig0023138:+53047 Msa1405460:CDS
GTTGCTAGGGAAAATGGTCG+CGG 0.629133 tig0023138:-51650 None:intergenic
TCGAAACCGCACAAAACAAG+GGG 0.655229 tig0023138:+51590 Msa1405460:CDS
GATCAAAGTGAATGGACAAG+CGG 0.657804 tig0023138:+53224 Msa1405460:CDS
ACACCCTTCAGAAAGTTGCA+AGG 0.664952 tig0023138:-53334 None:intergenic
TTTGAAGAAGATAACAAGGG+CGG 0.669853 tig0023138:+51707 Msa1405460:CDS
CTTTAGGTGGAGGCCCCTCG+TGG 0.681265 tig0023138:-52572 None:intergenic
AGAGAGCACAAAGGAATACG+AGG 0.687992 tig0023138:+51457 Msa1405460:CDS
GTAGGCTTGACAGTATCTCG+TGG 0.692488 tig0023138:-51623 None:intergenic
ACGCGCACAAAGAAGAAAGG+AGG 0.694653 tig0023138:+52216 Msa1405460:CDS
AAAGAACTGCAACTTCTGTG+AGG 0.704237 tig0023138:+52140 Msa1405460:intron
GGTCGGCGAAAGAGCAACAG+CGG 0.709755 tig0023138:+53024 Msa1405460:CDS
TAGTTCAGAAGAGAGCACAA+AGG 0.711655 tig0023138:+51448 Msa1405460:CDS
AGTGATGTGACTAACGACAA+TGG 0.713243 tig0023138:+53132 Msa1405460:CDS
TAACAAGAAACATTCAGACG+AGG 0.732280 tig0023138:+51965 Msa1405460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATTTATACTAAG+TGG - tig0023138:50575-50594 None:intergenic 10.0%
!! ATTAATTTCTTCAATTAATT+CGG - tig0023138:53202-53221 None:intergenic 10.0%
!! TTGTTCAAAAAACAATAAAA+GGG - tig0023138:50414-50433 None:intergenic 15.0%
!! TTTGTTCAAAAAACAATAAA+AGG - tig0023138:50415-50434 None:intergenic 15.0%
!!! TTTATTGTTTTTTGAACAAA+TGG + tig0023138:50415-50434 Msa1405460:intron 15.0%
!! ATTAAATTTATATACACGTT+TGG + tig0023138:50961-50980 Msa1405460:intron 15.0%
!! TTAAATTTATATACACGTTT+GGG + tig0023138:50962-50981 Msa1405460:intron 15.0%
!!! ATAGTTTTATTCAAAATTAG+AGG + tig0023138:52319-52338 Msa1405460:intron 15.0%
!!! ACTATTTATTTTTCCTATAC+TGG - tig0023138:50458-50477 None:intergenic 20.0%
!! ATAAATTTATACTAAGTGGT+TGG - tig0023138:50571-50590 None:intergenic 20.0%
!! AAAAGGAAAGTAATCAAATT+GGG - tig0023138:50704-50723 None:intergenic 20.0%
!!! TAGTTTTTCTTAACTTAGTT+AGG + tig0023138:50732-50751 Msa1405460:intron 20.0%
!!! TAGGTTTTTTAATCAATCTT+TGG + tig0023138:50856-50875 Msa1405460:intron 20.0%
!! TTGAAATAATCTTTCAGAAA+TGG - tig0023138:51043-51062 None:intergenic 20.0%
!! AGAAAAACAAAATCTTACAT+AGG - tig0023138:51157-51176 None:intergenic 20.0%
!! AAACTATAGCACAAATAAAA+AGG - tig0023138:52306-52325 None:intergenic 20.0%
!! CAAAATGACAATGTAATTTA+TGG - tig0023138:52429-52448 None:intergenic 20.0%
!!! TTTGACTTCATTTTATCTTT+TGG - tig0023138:52710-52729 None:intergenic 20.0%
!! ATTAATATGATCAAAGTGAA+TGG + tig0023138:53216-53235 Msa1405460:CDS 20.0%
!! ATCTCAAGTTATTTGTAAAA+AGG + tig0023138:53438-53457 Msa1405460:three_prime_UTR 20.0%
!!! ATGCAATAGTTTGTTATTAA+GGG + tig0023138:53584-53603 Msa1405460:three_prime_UTR 20.0%
!!! TTTTGGATCTGGAATAATAA+TGG - tig0023138:50259-50278 None:intergenic 25.0%
! TTGATGCATGAAAATGTAAA+GGG - tig0023138:50308-50327 None:intergenic 25.0%
! TTTGATGCATGAAAATGTAA+AGG - tig0023138:50309-50328 None:intergenic 25.0%
!! ATTGTTGATGTTTGTTAATC+AGG + tig0023138:50377-50396 Msa1405460:intron 25.0%
! GAAAAGGAAAGTAATCAAAT+TGG - tig0023138:50705-50724 None:intergenic 25.0%
! GAAAAACTAAAACACAGAAA+AGG - tig0023138:50721-50740 None:intergenic 25.0%
! AGAATATTCTCTTATCTTCT+AGG + tig0023138:50926-50945 Msa1405460:intron 25.0%
! GAATATTCTCTTATCTTCTA+GGG + tig0023138:50927-50946 Msa1405460:intron 25.0%
!!! TTTTATGAAATGGACTGTAT+AGG - tig0023138:51074-51093 None:intergenic 25.0%
!! ACTCAAGTGATTTTATGAAA+TGG - tig0023138:51084-51103 None:intergenic 25.0%
! AATTAAAGAATGCTTCCAAA+GGG - tig0023138:51111-51130 None:intergenic 25.0%
! AAATTAAAGAATGCTTCCAA+AGG - tig0023138:51112-51131 None:intergenic 25.0%
!! TTCTTTGTTATATAGTGCAA+TGG + tig0023138:51271-51290 Msa1405460:intron 25.0%
!! TCTTTGTTATATAGTGCAAT+GGG + tig0023138:51272-51291 Msa1405460:intron 25.0%
! TTCAGATATTTGTATCATCA+AGG + tig0023138:51304-51323 Msa1405460:CDS 25.0%
! ATCTAACCTAAAAAAAAGTG+AGG + tig0023138:51523-51542 Msa1405460:CDS 25.0%
! TTGTTATCTTCTTCAAAAGT+AGG - tig0023138:51704-51723 None:intergenic 25.0%
!!! TACTTTTGAAGAAGATAACA+AGG + tig0023138:51703-51722 Msa1405460:CDS 25.0%
!!! ACTTTTGAAGAAGATAACAA+GGG + tig0023138:51704-51723 Msa1405460:CDS 25.0%
! TTATAAACCTTATAGTCGAA+GGG + tig0023138:52021-52040 Msa1405460:intron 25.0%
!!! TTAAGTAGCTTTGTTTCAAT+AGG + tig0023138:52252-52271 Msa1405460:intron 25.0%
!!! TAAGTAGCTTTGTTTCAATA+GGG + tig0023138:52253-52272 Msa1405460:intron 25.0%
!!! TCTAATTTGTTCATCGATTA+AGG + tig0023138:52476-52495 Msa1405460:intron 25.0%
! TAATTGAGTGGTTATCATAT+AGG + tig0023138:52659-52678 Msa1405460:intron 25.0%
! AATGACAATGTTAACATGTA+TGG + tig0023138:52964-52983 Msa1405460:intron 25.0%
! ACTTCTAATTTATGAGTTTC+CGG + tig0023138:53294-53313 Msa1405460:three_prime_UTR 25.0%
!!! AGAAAGTGCTTATAAGTTAA+AGG - tig0023138:53371-53390 None:intergenic 25.0%
!!! CATGCAATAGTTTGTTATTA+AGG + tig0023138:53583-53602 Msa1405460:three_prime_UTR 25.0%
!!! ATAGTTTGTTATTAAGGGAA+AGG + tig0023138:53589-53608 Msa1405460:three_prime_UTR 25.0%
!! TCATAGAGAATCTTATTTCA+GGG - tig0023138:53624-53643 None:intergenic 25.0%
!! ATCATAGAGAATCTTATTTC+AGG - tig0023138:53625-53644 None:intergenic 25.0%
! TGAAATAAGATTCTCTATGA+TGG + tig0023138:53624-53643 Msa1405460:three_prime_UTR 25.0%
TGATGAGTTTGTGAATTACT+AGG - tig0023138:50205-50224 None:intergenic 30.0%
!! ATGACTCACATTTAGAGTTT+TGG - tig0023138:50276-50295 None:intergenic 30.0%
CTTAGAAGGAAAGAAAAAAG+TGG - tig0023138:50334-50353 None:intergenic 30.0%
TTTGTTAATCAGGTTCAGTT+TGG + tig0023138:50387-50406 Msa1405460:intron 30.0%
AACAATATGATTAACCGACA+AGG - tig0023138:50625-50644 None:intergenic 30.0%
! CTTAGTTAGGTAGACAATTT+TGG + tig0023138:50745-50764 Msa1405460:intron 30.0%
! GCTAACAACTTCAATACTTT+TGG + tig0023138:50813-50832 Msa1405460:intron 30.0%
AAAAAACCTAAGTAATGAGC+AGG - tig0023138:50846-50865 None:intergenic 30.0%
! AGTTGCTTTCAACTAAAAAG+TGG - tig0023138:50892-50911 None:intergenic 30.0%
CTTACATAGGTACAAATTCA+AGG - tig0023138:51144-51163 None:intergenic 30.0%
CATATTGTGATTATCAGTTC+CGG - tig0023138:51387-51406 None:intergenic 30.0%
TACAACAGAAGTTTCTGTTA+AGG + tig0023138:51490-51509 Msa1405460:CDS 30.0%
!!! ACTTCTCCTCACTTTTTTTT+AGG - tig0023138:51532-51551 None:intergenic 30.0%
TAATACGCTTAAACAGAATC+AGG + tig0023138:51772-51791 Msa1405460:CDS 30.0%
AATAGATTAGACAATGAAGG+AGG - tig0023138:51822-51841 None:intergenic 30.0%
AGCAATAGATTAGACAATGA+AGG - tig0023138:51825-51844 None:intergenic 30.0%
ATCTATTGCTGAACTGTTTA+TGG + tig0023138:51835-51854 Msa1405460:intron 30.0%
! TTCTTGTTATCAGGTTTCAA+CGG - tig0023138:51954-51973 None:intergenic 30.0%
! TCTGAATGTTTCTTGTTATC+AGG - tig0023138:51963-51982 None:intergenic 30.0%
CTTATAAACCTTATAGTCGA+AGG + tig0023138:52020-52039 Msa1405460:intron 30.0%
AGAAGAATCAAAATGAAGCA+AGG + tig0023138:52366-52385 Msa1405460:CDS 30.0%
AGAGATTTCTTCATTATCTC+AGG + tig0023138:52401-52420 Msa1405460:intron 30.0%
CAAATTAGAGTGAGAAAACT+AGG - tig0023138:52465-52484 None:intergenic 30.0%
! TTAAGTTGTTTATCCCAACA+GGG - tig0023138:52642-52661 None:intergenic 30.0%
! ATTAAGTTGTTTATCCCAAC+AGG - tig0023138:52643-52662 None:intergenic 30.0%
GGATAAACAACTTAATTGAG+TGG + tig0023138:52647-52666 Msa1405460:intron 30.0%
TCAGACATGATACTGTTATA+AGG - tig0023138:52826-52845 None:intergenic 30.0%
TTATAACAGTATCATGTCTG+AGG + tig0023138:52825-52844 Msa1405460:intron 30.0%
AATCTCATTGAAGACTTTAC+TGG - tig0023138:53266-53285 None:intergenic 30.0%
CTTCTAATTTATGAGTTTCC+GGG + tig0023138:53295-53314 Msa1405460:three_prime_UTR 30.0%
TTCTAATTTATGAGTTTCCG+GGG + tig0023138:53296-53315 Msa1405460:three_prime_UTR 30.0%
AAGGAAATTCTATTGCTCAT+AGG + tig0023138:53457-53476 Msa1405460:three_prime_UTR 30.0%
! GTCACATTGTTTGAAGTTAT+TGG + tig0023138:53519-53538 Msa1405460:three_prime_UTR 30.0%
AATAATGATGTTCAGTGAAC+AGG + tig0023138:53544-53563 Msa1405460:three_prime_UTR 30.0%
!!! CACATTTAGAGTTTTGGATC+TGG - tig0023138:50270-50289 None:intergenic 35.0%
AGAACATGCTAGATCTTAGA+AGG - tig0023138:50348-50367 None:intergenic 35.0%
TTGAACAAATGGTTCTTGCA+TGG + tig0023138:50426-50445 Msa1405460:intron 35.0%
TCTAGTGTATGATACCTTGT+CGG + tig0023138:50608-50627 Msa1405460:intron 35.0%
GGAAAGTAATCAAATTGGGT+TGG - tig0023138:50700-50719 None:intergenic 35.0%
ATTTGTCCTGCTCATTACTT+AGG + tig0023138:50837-50856 Msa1405460:intron 35.0%
AACTAAAAAGTGGAACCATG+GGG - tig0023138:50882-50901 None:intergenic 35.0%
CAACTAAAAAGTGGAACCAT+GGG - tig0023138:50883-50902 None:intergenic 35.0%
TCAACTAAAAAGTGGAACCA+TGG - tig0023138:50884-50903 None:intergenic 35.0%
ATCACTTGAGTAAAACCCTT+TGG + tig0023138:51093-51112 Msa1405460:intron 35.0%
TGAATTGTGCGAAATTCCAT+CGG - tig0023138:51354-51373 None:intergenic 35.0%
CGGAACTGATAATCACAATA+TGG + tig0023138:51385-51404 Msa1405460:CDS 35.0%
TTTGAAGAAGATAACAAGGG+CGG + tig0023138:51707-51726 Msa1405460:CDS 35.0%
GGAGGAAGCAAATTCAAAAT+CGG - tig0023138:51804-51823 None:intergenic 35.0%
TAACAAGAAACATTCAGACG+AGG + tig0023138:51965-51984 Msa1405460:CDS 35.0%
ATTCATGTTCAGTTGCTTCT+GGG + tig0023138:51991-52010 Msa1405460:CDS 35.0%
AGAAGTTGCAGTTCTTTACA+TGG - tig0023138:52137-52156 None:intergenic 35.0%
! GGTTTTCTTCCCAAATTGAT+CGG + tig0023138:52274-52293 Msa1405460:intron 35.0%
ATCGATTAAGGAAGAGAAAG+AGG + tig0023138:52488-52507 Msa1405460:intron 35.0%
TTCTTCAAGTCAACTTTAGG+TGG - tig0023138:52588-52607 None:intergenic 35.0%
!! ACCTAAAGTTGACTTGAAGA+AGG + tig0023138:52587-52606 Msa1405460:CDS 35.0%
ACCTTCTTCAAGTCAACTTT+AGG - tig0023138:52591-52610 None:intergenic 35.0%
! GACTTGAAGAAGGTATGTAA+TGG + tig0023138:52597-52616 Msa1405460:intron 35.0%
TACTTAAACTTATGCCCTGT+TGG + tig0023138:52625-52644 Msa1405460:intron 35.0%
ACTTAAACTTATGCCCTGTT+GGG + tig0023138:52626-52645 Msa1405460:intron 35.0%
!! TTCAATTAATTCGGTGTGCT+CGG - tig0023138:53193-53212 None:intergenic 35.0%
ACAAATGGTTCTTGCATGGT+TGG + tig0023138:50430-50449 Msa1405460:intron 40.0%
TTAATCAATCTTTGGCCCCA+TGG + tig0023138:50864-50883 Msa1405460:intron 40.0%
GAATAGACTACAACACGATC+TGG - tig0023138:51332-51351 None:intergenic 40.0%
GATGGAATTTCGCACAATTC+AGG + tig0023138:51353-51372 Msa1405460:CDS 40.0%
CACAATTCAGGTCATGAAAC+CGG + tig0023138:51365-51384 Msa1405460:CDS 40.0%
! TAGTTCAGAAGAGAGCACAA+AGG + tig0023138:51448-51467 Msa1405460:CDS 40.0%
AGAAGTTTCTGTTAAGGCCT+CGG + tig0023138:51496-51515 Msa1405460:CDS 40.0%
!!! TTTTAGGTTAGATACGTCCG+AGG - tig0023138:51516-51535 None:intergenic 40.0%
! AAGTTGACGCCAGATTTTGA+GGG + tig0023138:51548-51567 Msa1405460:CDS 40.0%
TTGAGAACACCCTCAAAATC+TGG - tig0023138:51560-51579 None:intergenic 40.0%
TTCGAAACCGCACAAAACAA+GGG + tig0023138:51589-51608 Msa1405460:CDS 40.0%
!!! TGATTACCCCTTGTTTTGTG+CGG - tig0023138:51599-51618 None:intergenic 40.0%
CTTTCAGTTGCTAGGGAAAA+TGG - tig0023138:51659-51678 None:intergenic 40.0%
! CATTTTCCCTAGCAACTGAA+AGG + tig0023138:51657-51676 Msa1405460:CDS 40.0%
TAAAGGAGACTTCAACTGCA+AGG - tig0023138:51919-51938 None:intergenic 40.0%
! TGAAGTCTCCTTTAGTTCCA+AGG + tig0023138:51925-51944 Msa1405460:CDS 40.0%
AACGGTTTCCTTGGAACTAA+AGG - tig0023138:51936-51955 None:intergenic 40.0%
GATTCATGTTCAGTTGCTTC+TGG + tig0023138:51990-52009 Msa1405460:CDS 40.0%
TTTGACACCCTTCGACTATA+AGG - tig0023138:52031-52050 None:intergenic 40.0%
CAGTTCTTTACATGGTCAAG+GGG - tig0023138:52129-52148 None:intergenic 40.0%
GCAGTTCTTTACATGGTCAA+GGG - tig0023138:52130-52149 None:intergenic 40.0%
TGCAGTTCTTTACATGGTCA+AGG - tig0023138:52131-52150 None:intergenic 40.0%
AAAGAACTGCAACTTCTGTG+AGG + tig0023138:52140-52159 Msa1405460:intron 40.0%
! AGGAATGCACCGATCAATTT+GGG - tig0023138:52286-52305 None:intergenic 40.0%
! AAGGAATGCACCGATCAATT+TGG - tig0023138:52287-52306 None:intergenic 40.0%
AGAGGAAAAGCAACAAGCAA+TGG + tig0023138:52337-52356 Msa1405460:CDS 40.0%
TCAAAATGAAGCAAGGAGCA+AGG + tig0023138:52373-52392 Msa1405460:CDS 40.0%
TTCAAGTCAACTTTAGGTGG+AGG - tig0023138:52585-52604 None:intergenic 40.0%
! AACAGTCTCACAAGTGCTTT+TGG + tig0023138:52764-52783 Msa1405460:intron 40.0%
! TTTGGAGATTTTGCACGTGT+GGG - tig0023138:53000-53019 None:intergenic 40.0%
!! TTTTGGAGATTTTGCACGTG+TGG - tig0023138:53001-53020 None:intergenic 40.0%
ACGTGCAAAATCTCCAAAAC+TGG + tig0023138:53002-53021 Msa1405460:CDS 40.0%
CGTGCAAAATCTCCAAAACT+GGG + tig0023138:53003-53022 Msa1405460:CDS 40.0%
CAAAATCTCCAAAACTGGGT+CGG + tig0023138:53007-53026 Msa1405460:CDS 40.0%
GTGCAGCTAATTCATCTGAA+GGG + tig0023138:53046-53065 Msa1405460:CDS 40.0%
TGCAGCTAATTCATCTGAAG+GGG + tig0023138:53047-53066 Msa1405460:CDS 40.0%
TCTGAAGGGGTCAAAGAAAA+AGG + tig0023138:53060-53079 Msa1405460:CDS 40.0%
CACATCACTCAAGTTACAAC+TGG - tig0023138:53121-53140 None:intergenic 40.0%
AGTGATGTGACTAACGACAA+TGG + tig0023138:53132-53151 Msa1405460:CDS 40.0%
GATCAAAGTGAATGGACAAG+CGG + tig0023138:53224-53243 Msa1405460:CDS 40.0%
ATCAAAGTGAATGGACAAGC+GGG + tig0023138:53225-53244 Msa1405460:CDS 40.0%
ATTTATGAGTTTCCGGGGAA+TGG + tig0023138:53301-53320 Msa1405460:three_prime_UTR 40.0%
TGTTCCTTGCAACTTTCTGA+AGG + tig0023138:53330-53349 Msa1405460:three_prime_UTR 40.0%
GTTCCTTGCAACTTTCTGAA+GGG + tig0023138:53331-53350 Msa1405460:three_prime_UTR 40.0%
TGCATGGTTGGATCCAGTAT+AGG + tig0023138:50442-50461 Msa1405460:intron 45.0%
TATACACGTTTGGGCATGCT+TGG + tig0023138:50971-50990 Msa1405460:intron 45.0%
CGTGTTGTAGTCTATTCCGA+TGG + tig0023138:51335-51354 Msa1405460:CDS 45.0%
! AGAGAGCACAAAGGAATACG+AGG + tig0023138:51457-51476 Msa1405460:CDS 45.0%
CACAAAGGAATACGAGGTGA+AGG + tig0023138:51463-51482 Msa1405460:CDS 45.0%
! GAAGTTGACGCCAGATTTTG+AGG + tig0023138:51547-51566 Msa1405460:CDS 45.0%
GTTCGAAACCGCACAAAACA+AGG + tig0023138:51588-51607 Msa1405460:CDS 45.0%
TCGAAACCGCACAAAACAAG+GGG + tig0023138:51590-51609 Msa1405460:CDS 45.0%
GAAGATAACAAGGGCGGTAA+TGG + tig0023138:51713-51732 Msa1405460:CDS 45.0%
TCAGGTTTCAACGGTTTCCT+TGG - tig0023138:51945-51964 None:intergenic 45.0%
! TGTGAGGTCTTTCAAGTCCA+GGG + tig0023138:52156-52175 Msa1405460:CDS 45.0%
TTGCTTCTGCTCCAAGCTTT+CGG + tig0023138:52185-52204 Msa1405460:CDS 45.0%
TGAACGCGCACAAAGAAGAA+AGG + tig0023138:52213-52232 Msa1405460:CDS 45.0%
AGGAAGCCATCAAACAGTTG+AGG + tig0023138:52508-52527 Msa1405460:CDS 45.0%
AAGCCATCAAACAGTTGAGG+AGG + tig0023138:52511-52530 Msa1405460:CDS 45.0%
ACTCCTCCTCAACTGTTTGA+TGG - tig0023138:52517-52536 None:intergenic 45.0%
CGTGGTAAAAGCTTGGCATA+GGG - tig0023138:52557-52576 None:intergenic 45.0%
TCGTGGTAAAAGCTTGGCAT+AGG - tig0023138:52558-52577 None:intergenic 45.0%
! TATGCCAAGCTTTTACCACG+AGG + tig0023138:52557-52576 Msa1405460:CDS 45.0%
! ATGCCAAGCTTTTACCACGA+GGG + tig0023138:52558-52577 Msa1405460:CDS 45.0%
GGTGCAGCTAATTCATCTGA+AGG + tig0023138:53045-53064 Msa1405460:CDS 45.0%
AGGGGTCAAAGAAAAAGGAG+CGG + tig0023138:53065-53084 Msa1405460:CDS 45.0%
TGTGACTAACGACAATGGCT+TGG + tig0023138:53137-53156 Msa1405460:CDS 45.0%
! ACTAACGACAATGGCTTGGA+TGG + tig0023138:53141-53160 Msa1405460:CDS 45.0%
GGAACAATACTTCCATTCCC+CGG - tig0023138:53316-53335 None:intergenic 45.0%
ACACCCTTCAGAAAGTTGCA+AGG - tig0023138:53337-53356 None:intergenic 45.0%
TTTCTGTCTGCCTCAACTTC+AGG + tig0023138:53496-53515 Msa1405460:three_prime_UTR 45.0%
TTCTGTCTGCCTCAACTTCA+GGG + tig0023138:53497-53516 Msa1405460:three_prime_UTR 45.0%
ACAATGTGACCCTGAAGTTG+AGG - tig0023138:53509-53528 None:intergenic 45.0%
GTAGGCTTGACAGTATCTCG+TGG - tig0023138:51626-51645 None:intergenic 50.0%
GAAAATGGTCGCGGAACTGT+AGG - tig0023138:51644-51663 None:intergenic 50.0%
GTTGCTAGGGAAAATGGTCG+CGG - tig0023138:51653-51672 None:intergenic 50.0%
AGCACGCCTTTCAGTTGCTA+GGG - tig0023138:51666-51685 None:intergenic 50.0%
TAGCACGCCTTTCAGTTGCT+AGG - tig0023138:51667-51686 None:intergenic 50.0%
! CTGTGAGGTCTTTCAAGTCC+AGG + tig0023138:52155-52174 Msa1405460:CDS 50.0%
ACGCGCACAAAGAAGAAAGG+AGG + tig0023138:52216-52235 Msa1405460:CDS 50.0%
! TGCCAAGCTTTTACCACGAG+GGG + tig0023138:52559-52578 Msa1405460:CDS 50.0%
AGCAGAAGCAACAGTTGCCC+TGG - tig0023138:52176-52195 None:intergenic 55.0%
CGTTCAGTCGACCGAAAGCT+TGG - tig0023138:52199-52218 None:intergenic 55.0%
! GGAGATTTTGCACGTGTGGG+TGG - tig0023138:52997-53016 None:intergenic 55.0%
! CTCTTTCGCCGACCCAGTTT+TGG - tig0023138:53018-53037 None:intergenic 55.0%
GGCCCCTCGTGGTAAAAGCT+TGG - tig0023138:52564-52583 None:intergenic 60.0%
TTGCACGTGTGGGTGGTAGC+TGG - tig0023138:52990-53009 None:intergenic 60.0%
GGTCGGCGAAAGAGCAACAG+CGG + tig0023138:53024-53043 Msa1405460:CDS 60.0%
CTTTAGGTGGAGGCCCCTCG+TGG - tig0023138:52575-52594 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0023138 gene 50149 53648 50149 ID=Msa1405460;Name=Msa1405460
tig0023138 mRNA 50149 53648 50149 ID=Msa1405460-mRNA-1;Parent=Msa1405460;Name=Msa1405460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=142|1|1|1|0.83|0.71|7|379|382
tig0023138 exon 50149 50286 50149 ID=Msa1405460-mRNA-1:exon:24076;Parent=Msa1405460-mRNA-1
tig0023138 exon 51286 51793 51286 ID=Msa1405460-mRNA-1:exon:24077;Parent=Msa1405460-mRNA-1
tig0023138 exon 51924 52012 51924 ID=Msa1405460-mRNA-1:exon:24078;Parent=Msa1405460-mRNA-1
tig0023138 exon 52144 52237 52144 ID=Msa1405460-mRNA-1:exon:24079;Parent=Msa1405460-mRNA-1
tig0023138 exon 52323 52394 52323 ID=Msa1405460-mRNA-1:exon:24080;Parent=Msa1405460-mRNA-1
tig0023138 exon 52498 52608 52498 ID=Msa1405460-mRNA-1:exon:24081;Parent=Msa1405460-mRNA-1
tig0023138 exon 52991 53648 52991 ID=Msa1405460-mRNA-1:exon:24082;Parent=Msa1405460-mRNA-1
tig0023138 five_prime_UTR 50149 50286 50149 ID=Msa1405460-mRNA-1:five_prime_utr;Parent=Msa1405460-mRNA-1
tig0023138 five_prime_UTR 51286 51289 51286 ID=Msa1405460-mRNA-1:five_prime_utr;Parent=Msa1405460-mRNA-1
tig0023138 CDS 51290 51793 51290 ID=Msa1405460-mRNA-1:cds;Parent=Msa1405460-mRNA-1
tig0023138 CDS 51924 52012 51924 ID=Msa1405460-mRNA-1:cds;Parent=Msa1405460-mRNA-1
tig0023138 CDS 52144 52237 52144 ID=Msa1405460-mRNA-1:cds;Parent=Msa1405460-mRNA-1
tig0023138 CDS 52323 52394 52323 ID=Msa1405460-mRNA-1:cds;Parent=Msa1405460-mRNA-1
tig0023138 CDS 52498 52608 52498 ID=Msa1405460-mRNA-1:cds;Parent=Msa1405460-mRNA-1
tig0023138 CDS 52991 53269 52991 ID=Msa1405460-mRNA-1:cds;Parent=Msa1405460-mRNA-1
tig0023138 three_prime_UTR 53270 53648 53270 ID=Msa1405460-mRNA-1:three_prime_utr;Parent=Msa1405460-mRNA-1
Gene Sequence

>Msa1405460

ATGGGAATAGAAGATTCAGATATTTGTATCATCAAGGAGCCAGATCGTGTTGTAGTCTATTCCGATGGAATTTCGCACAATTCAGGTCATGAAACCGGAACTGATAATCACAATATGGCAGAGTCTTATGAGCATATCAACGAGACTACTGAACATCATAGTTCAGAAGAGAGCACAAAGGAATACGAGGTGAAGGAATGTACAACAGAAGTTTCTGTTAAGGCCTCGGACGTATCTAACCTAAAAAAAAGTGAGGAGAAGTTGACGCCAGATTTTGAGGGTGTTCTCAATGTGAAAAGTTCGAAACCGCACAAAACAAGGGGTAATCAAAAGCCACGAGATACTGTCAAGCCTACAGTTCCGCGACCATTTTCCCTAGCAACTGAAAGGCGTGCTACAATTGTAACTCGTCCTACTTTTGAAGAAGATAACAAGGGCGGTAATGGAAGAAAATCTGTAAATAAAAAGAATGTGCTGTCTTCTAATACGCTTAAACAGAATCAGTTGAAGTCTCCTTTAGTTCCAAGGAAACCGTTGAAACCTGATAACAAGAAACATTCAGACGAGGACGATTCATGTTCAGTTGCTTCTGGAACTGCAACTTCTGTGAGGTCTTTCAAGTCCAGGGCAACTGTTGCTTCTGCTCCAAGCTTTCGGTCGACTGAACGCGCACAAAGAAGAAAGGAGTTTTATTCAAAATTAGAGGAAAAGCAACAAGCAATGGAAGCTGAGAAGAATCAAAATGAAGCAAGGAGCAAGGAAGAGAAAGAGGAAGCCATCAAACAGTTGAGGAGGAGTTTAAAGTTTAAAGCAAGCCCTATGCCAAGCTTTTACCACGAGGGGCCTCCACCTAAAGTTGACTTGAAGAAGCTACCACCCACACGTGCAAAATCTCCAAAACTGGGTCGGCGAAAGAGCAACAGCGGTGCAGCTAATTCATCTGAAGGGGTCAAAGAAAAAGGAGCGGCTGCTCAGAGAAAGCATCGCACATCGAACACCAGTTGTAACTTGAGTGATGTGACTAACGACAATGGCTTGGATGGTCTCAAAAATAAGACTGAAAACAAGACCGAGCACACCGAATTAATTGAAGAAATTAATATGATCAAAGTGAATGGACAAGCGGGCATAGAGATCAGCAGCCAGTAA

Protein sequence

>Msa1405460

MGIEDSDICIIKEPDRVVVYSDGISHNSGHETGTDNHNMAESYEHINETTEHHSSEESTKEYEVKECTTEVSVKASDVSNLKKSEEKLTPDFEGVLNVKSSKPHKTRGNQKPRDTVKPTVPRPFSLATERRATIVTRPTFEEDNKGGNGRKSVNKKNVLSSNTLKQNQLKSPLVPRKPLKPDNKKHSDEDDSCSVASGTATSVRSFKSRATVASAPSFRSTERAQRRKEFYSKLEEKQQAMEAEKNQNEARSKEEKEEAIKQLRRSLKFKASPMPSFYHEGPPPKVDLKKLPPTRAKSPKLGRRKSNSGAANSSEGVKEKGAAAQRKHRTSNTSCNLSDVTNDNGLDGLKNKTENKTEHTELIEEINMIKVNGQAGIEISSQ*