Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0554050 | XP_013456641.1 | 97.516 | 161 | 4 | 0 | 1 | 161 | 1 | 161 | 6.36e-108 | 314 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0554050 | sp|A0A3G5BB24|NBS_NARPS | 50.735 | 136 | 67 | 0 | 1 | 136 | 1 | 136 | 8.52e-45 | 147 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0554050 | A0A072ULU0 | 97.516 | 161 | 4 | 0 | 1 | 161 | 1 | 161 | 3.04e-108 | 314 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0015400 | Msa0554050 | 0.805029 | 1.626009e-49 | -8.615850e-47 |
Msa0096450 | Msa0554050 | 0.803076 | 4.142736e-49 | -8.615850e-47 |
Msa0116770 | Msa0554050 | 0.808510 | 2.988738e-50 | -8.615850e-47 |
Msa0131770 | Msa0554050 | 0.806666 | 7.361477e-50 | -8.615850e-47 |
Msa0158480 | Msa0554050 | 0.807568 | 4.744313e-50 | -8.615850e-47 |
Msa0165210 | Msa0554050 | 0.819440 | 1.160103e-52 | -8.615850e-47 |
Msa0170230 | Msa0554050 | 0.813162 | 2.942795e-51 | -8.615850e-47 |
Msa0171300 | Msa0554050 | 0.843714 | 1.182596e-58 | -8.615850e-47 |
Msa0178960 | Msa0554050 | 0.802600 | 5.193719e-49 | -8.615850e-47 |
Msa0179280 | Msa0554050 | 0.803441 | 3.481785e-49 | -8.615850e-47 |
Msa0212990 | Msa0554050 | 0.808197 | 3.486707e-50 | -8.615850e-47 |
Msa0214300 | Msa0554050 | 0.801294 | 9.635589e-49 | -8.615850e-47 |
Msa0394530 | Msa0554050 | 0.822273 | 2.586827e-53 | -8.615850e-47 |
Msa0395770 | Msa0554050 | -0.804342 | 2.262388e-49 | -8.615850e-47 |
Msa0416650 | Msa0554050 | 0.827103 | 1.881605e-54 | -8.615850e-47 |
Msa0417070 | Msa0554050 | 0.811312 | 7.455376e-51 | -8.615850e-47 |
Msa0424320 | Msa0554050 | 0.812499 | 4.110900e-51 | -8.615850e-47 |
Msa0426640 | Msa0554050 | 0.809172 | 2.157299e-50 | -8.615850e-47 |
Msa0435390 | Msa0554050 | 0.820922 | 5.310011e-53 | -8.615850e-47 |
Msa0435400 | Msa0554050 | 0.821208 | 4.561420e-53 | -8.615850e-47 |
Msa0477020 | Msa0554050 | 0.800986 | 1.113956e-48 | -8.615850e-47 |
Msa0479340 | Msa0554050 | 0.815345 | 9.693878e-52 | -8.615850e-47 |
Msa0279510 | Msa0554050 | 0.805468 | 1.315425e-49 | -8.615850e-47 |
Msa0285450 | Msa0554050 | 0.801304 | 9.592891e-49 | -8.615850e-47 |
Msa0315290 | Msa0554050 | 0.801732 | 7.837606e-49 | -8.615850e-47 |
Msa0320120 | Msa0554050 | 0.808225 | 3.439337e-50 | -8.615850e-47 |
Msa0330340 | Msa0554050 | 0.803518 | 3.354919e-49 | -8.615850e-47 |
Msa0495320 | Msa0554050 | 0.803106 | 4.083091e-49 | -8.615850e-47 |
Msa0495330 | Msa0554050 | 0.818668 | 1.738661e-52 | -8.615850e-47 |
Msa0512750 | Msa0554050 | 0.821611 | 3.683122e-53 | -8.615850e-47 |
Msa0523940 | Msa0554050 | 0.822332 | 2.506765e-53 | -8.615850e-47 |
Msa0538170 | Msa0554050 | 0.818038 | 2.414569e-52 | -8.615850e-47 |
Msa0545210 | Msa0554050 | 0.815913 | 7.245442e-52 | -8.615850e-47 |
Msa0554050 | Msa0594560 | 0.802130 | 6.492666e-49 | -8.615850e-47 |
Msa0554050 | Msa0625190 | 0.805278 | 1.442152e-49 | -8.615850e-47 |
Msa0554050 | Msa0626410 | 0.831296 | 1.809034e-55 | -8.615850e-47 |
Msa0554050 | Msa0657970 | 0.809834 | 1.555388e-50 | -8.615850e-47 |
Msa0554050 | Msa0661650 | 0.805516 | 1.285783e-49 | -8.615850e-47 |
Msa0554050 | Msa0663380 | 0.803926 | 2.760901e-49 | -8.615850e-47 |
Msa0554050 | Msa0663440 | 0.806047 | 9.944416e-50 | -8.615850e-47 |
Msa0554050 | Msa0672570 | 0.831617 | 1.507979e-55 | -8.615850e-47 |
Msa0554050 | Msa0673450 | 0.814891 | 1.223151e-51 | -8.615850e-47 |
Msa0554050 | Msa0673460 | 0.813886 | 2.039594e-51 | -8.615850e-47 |
Msa0554050 | Msa0685900 | 0.801940 | 7.102227e-49 | -8.615850e-47 |
Msa0554050 | Msa0691010 | 0.972028 | 4.206669e-134 | -8.615850e-47 |
Msa0554050 | Msa0701010 | 0.826522 | 2.590345e-54 | -8.615850e-47 |
Msa0554050 | Msa0731940 | 0.804238 | 2.377925e-49 | -8.615850e-47 |
Msa0554050 | Msa0735170 | 0.808790 | 2.604363e-50 | -8.615850e-47 |
Msa0554050 | Msa0735660 | 0.837459 | 5.134886e-57 | -8.615850e-47 |
Msa0554050 | Msa0762360 | 0.802126 | 6.505733e-49 | -8.615850e-47 |
Msa0554050 | Msa0798430 | 0.802562 | 5.290627e-49 | -8.615850e-47 |
Msa0554050 | Msa0803300 | 0.801268 | 9.753947e-49 | -8.615850e-47 |
Msa0554050 | Msa0842650 | 0.810310 | 1.228113e-50 | -8.615850e-47 |
Msa0554050 | Msa0857640 | 0.810596 | 1.065763e-50 | -8.615850e-47 |
Msa0554050 | Msa0876580 | 0.810359 | 1.198654e-50 | -8.615850e-47 |
Msa0554050 | Msa0877250 | 0.809909 | 1.498454e-50 | -8.615850e-47 |
Msa0554050 | Msa0897330 | 0.819368 | 1.204630e-52 | -8.615850e-47 |
Msa0554050 | Msa0933100 | 0.809913 | 1.495814e-50 | -8.615850e-47 |
Msa0554050 | Msa0942200 | 0.810014 | 1.423034e-50 | -8.615850e-47 |
Msa0554050 | Msa0967580 | 0.805572 | 1.251246e-49 | -8.615850e-47 |
Msa0554050 | Msa0969520 | 0.810025 | 1.414667e-50 | -8.615850e-47 |
Msa0554050 | Msa0974070 | 0.809217 | 2.109874e-50 | -8.615850e-47 |
Msa0554050 | Msa0974080 | 0.818768 | 1.649380e-52 | -8.615850e-47 |
Msa0554050 | Msa0983090 | 0.813213 | 2.867846e-51 | -8.615850e-47 |
Msa0554050 | Msa0985560 | 0.801182 | 1.015924e-48 | -8.615850e-47 |
Msa0554050 | Msa1014540 | 0.812804 | 3.526486e-51 | -8.615850e-47 |
Msa0554050 | Msa1019000 | 0.818295 | 2.111570e-52 | -8.615850e-47 |
Msa0554050 | Msa1019150 | 0.824313 | 8.638565e-54 | -8.615850e-47 |
Msa0554050 | Msa1030970 | 0.808624 | 2.826953e-50 | -8.615850e-47 |
Msa0554050 | Msa1046280 | 0.813905 | 2.019680e-51 | -8.615850e-47 |
Msa0554050 | Msa1054990 | 0.804095 | 2.546134e-49 | -8.615850e-47 |
Msa0554050 | Msa1075220 | -0.800385 | 1.477479e-48 | -8.615850e-47 |
Msa0554050 | Msa1075540 | 0.819456 | 1.150486e-52 | -8.615850e-47 |
Msa0554050 | Msa1082500 | 0.817719 | 2.850286e-52 | -8.615850e-47 |
Msa0554050 | Msa1083840 | 0.812855 | 3.436948e-51 | -8.615850e-47 |
Msa0554050 | Msa1089940 | 0.800359 | 1.495903e-48 | -8.615850e-47 |
Msa0554050 | Msa1090240 | 0.809715 | 1.650193e-50 | -8.615850e-47 |
Msa0554050 | Msa1091830 | 0.811024 | 8.610345e-51 | -8.615850e-47 |
Msa0554050 | Msa1100050 | 0.821233 | 4.502252e-53 | -8.615850e-47 |
Msa0554050 | Msa1113170 | 0.812464 | 4.184991e-51 | -8.615850e-47 |
Msa0554050 | Msa1121490 | 0.803353 | 3.630750e-49 | -8.615850e-47 |
Msa0554050 | Msa1129550 | 0.803019 | 4.256623e-49 | -8.615850e-47 |
Msa0554050 | Msa1135470 | 0.802722 | 4.903212e-49 | -8.615850e-47 |
Msa0554050 | Msa1137570 | 0.807351 | 5.275135e-50 | -8.615850e-47 |
Msa0554050 | Msa1142020 | 0.806905 | 6.556321e-50 | -8.615850e-47 |
Msa0554050 | Msa1147740 | 0.825205 | 5.322427e-54 | -8.615850e-47 |
Msa0554050 | Msa1162550 | -0.807292 | 5.428141e-50 | -8.615850e-47 |
Msa0554050 | Msa1174040 | 0.801366 | 9.315402e-49 | -8.615850e-47 |
Msa0554050 | Msa1178180 | 0.813066 | 3.089900e-51 | -8.615850e-47 |
Msa0554050 | Msa1179770 | 0.800178 | 1.628142e-48 | -8.615850e-47 |
Msa0554050 | Msa1212940 | 0.801245 | 9.860815e-49 | -8.615850e-47 |
Msa0554050 | Msa1277660 | 0.810597 | 1.064801e-50 | -8.615850e-47 |
Msa0554050 | Msa1284680 | 0.845429 | 4.084584e-59 | -8.615850e-47 |
Msa0554050 | Msa1297210 | 0.809101 | 2.234867e-50 | -8.615850e-47 |
Msa0554050 | Msa1308620 | 0.806610 | 7.567809e-50 | -8.615850e-47 |
Msa0554050 | Msa1353470 | 0.805209 | 1.490722e-49 | -8.615850e-47 |
Msa0554050 | Msa1364380 | 0.808558 | 2.920350e-50 | -8.615850e-47 |
Msa0554050 | Msa1371310 | 0.806246 | 9.027987e-50 | -8.615850e-47 |
Msa0554050 | Msa1372760 | 0.817480 | 3.227212e-52 | -8.615850e-47 |
Msa0554050 | Msa1392240 | 0.803717 | 3.051375e-49 | -8.615850e-47 |
Msa0554050 | Msa1424680 | 0.800115 | 1.676507e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0554050 | MtrunA17_Chr4g0039921 | 97.516 | 161 | 4 | 0 | 1 | 161 | 1 | 161 | 5.85e-112 | 314 |
Msa0554050 | MtrunA17_Chr4g0039941 | 78.395 | 162 | 34 | 1 | 1 | 161 | 1 | 162 | 6.75e-88 | 254 |
Msa0554050 | MtrunA17_Chr3g0100201 | 38.144 | 97 | 58 | 1 | 35 | 129 | 34 | 130 | 2.62e-14 | 66.2 |
Msa0554050 | MtrunA17_Chr3g0100191 | 30.693 | 101 | 70 | 0 | 27 | 127 | 26 | 126 | 2.70e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 55 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTTCATTCATGAACTAAT+TGG | 0.210292 | 4_1:-51333769 | None:intergenic |
TCCACCTTCTGAAATCTTTC+AGG | 0.221004 | 4_1:-51332917 | None:intergenic |
CTCTTTGGCACTCTTGCTAT+TGG | 0.264799 | 4_1:+51332872 | Msa0554050:CDS |
TGGTGTTATGTGTCAAGTTT+AGG | 0.334539 | 4_1:+51332678 | Msa0554050:five_prime_UTR |
GAAAATTTGTTCTTCAACCT+TGG | 0.366123 | 4_1:-51333886 | None:intergenic |
AGATCCCATGCTTCACTTGC+TGG | 0.373899 | 4_1:-51332851 | None:intergenic |
CTACAATGTCTGCCAATTGC+TGG | 0.390692 | 4_1:-51333609 | None:intergenic |
GGATGTGGTGTATGTGGTGC+GGG | 0.398785 | 4_1:-51332758 | None:intergenic |
TCAGGTTTACCTGGCCCAAC+TGG | 0.416975 | 4_1:+51333379 | Msa0554050:intron |
TTGAAGGAGATGGAGGGGTT+GGG | 0.418155 | 4_1:+51332945 | Msa0554050:CDS |
AAGAGATCAAAGAAGATGTT+TGG | 0.421807 | 4_1:+51332797 | Msa0554050:exon |
ACTTGTTTCCATCCAGCAAT+TGG | 0.424661 | 4_1:+51333597 | Msa0554050:CDS |
AGTGAAGCATGGGATCTCTT+TGG | 0.449536 | 4_1:+51332857 | Msa0554050:CDS |
TTGCATCCTTGTTTCTGTTG+AGG | 0.456610 | 4_1:-51333648 | None:intergenic |
ATTGAAGGAGATGGAGGGGT+TGG | 0.457658 | 4_1:+51332944 | Msa0554050:CDS |
GAGACCTAGGTTCGATACTT+TGG | 0.473082 | 4_1:-51333864 | None:intergenic |
GGAGTTTGATCAGGTTTACC+TGG | 0.477722 | 4_1:+51333370 | Msa0554050:intron |
TACACAAACTATTTGGGATG+TGG | 0.481481 | 4_1:-51332773 | None:intergenic |
TTGGCAGACATTGTAGAAGT+TGG | 0.481902 | 4_1:+51333616 | Msa0554050:CDS |
CACACTATTTAGAGTTCGTA+TGG | 0.490157 | 4_1:+51333489 | Msa0554050:CDS |
CGTATGGAAGTGATAGAGAA+AGG | 0.493358 | 4_1:+51333505 | Msa0554050:CDS |
CAGAAGGTGGAGCTAATTGA+AGG | 0.500124 | 4_1:+51332929 | Msa0554050:CDS |
AAAGAAGTGGAGGTAGTTGA+AGG | 0.506304 | 4_1:+51333445 | Msa0554050:CDS |
TTCTTCAACCTTGGAGACCT+AGG | 0.509081 | 4_1:-51333877 | None:intergenic |
GTGGAGCTAATTGAAGGAGA+TGG | 0.515580 | 4_1:+51332935 | Msa0554050:CDS |
AGAGTATGAAGTCAAGGAAG+AGG | 0.520181 | 4_1:+51333558 | Msa0554050:CDS |
GAATTAATGAAACAAAATGT+TGG | 0.520394 | 4_1:-51333810 | None:intergenic |
AAGAAGTGGAGGTAGTTGAA+GGG | 0.522228 | 4_1:+51333446 | Msa0554050:CDS |
TGGCACTCTTGCTATTGGAA+AGG | 0.531710 | 4_1:+51332877 | Msa0554050:CDS |
TACATTAGAGTATGAAGTCA+AGG | 0.533592 | 4_1:+51333552 | Msa0554050:CDS |
AGAAGTGGAGGTAGTTGAAG+GGG | 0.538439 | 4_1:+51333447 | Msa0554050:CDS |
GAGCTAATTGAAGGAGATGG+AGG | 0.540375 | 4_1:+51332938 | Msa0554050:CDS |
CGTGCCAGCAAGTGAAGCAT+GGG | 0.555967 | 4_1:+51332847 | Msa0554050:CDS |
CTCAAACTCACATTCACTCC+AGG | 0.556420 | 4_1:+51332974 | Msa0554050:CDS |
GGGATGTGGTGTATGTGGTG+CGG | 0.562331 | 4_1:-51332759 | None:intergenic |
TGAAAAGCACATCAAAGAAG+TGG | 0.563701 | 4_1:+51333432 | Msa0554050:CDS |
ACGTGCCAGCAAGTGAAGCA+TGG | 0.570168 | 4_1:+51332846 | Msa0554050:CDS |
TATACTTCACATCAAAATTG+TGG | 0.571099 | 4_1:+51332710 | Msa0554050:five_prime_UTR |
AGCTAATTGAAGGAGATGGA+GGG | 0.580245 | 4_1:+51332939 | Msa0554050:CDS |
TATTTGGGATGTGGTGTATG+TGG | 0.581504 | 4_1:-51332764 | None:intergenic |
GCTAATTGAAGGAGATGGAG+GGG | 0.586950 | 4_1:+51332940 | Msa0554050:CDS |
AATGTCTGCCAATTGCTGGA+TGG | 0.587707 | 4_1:-51333605 | None:intergenic |
GAAGTGGAGGTAGTTGAAGG+GGG | 0.588145 | 4_1:+51333448 | Msa0554050:CDS |
GCCTGAAAGATTTCAGAAGG+TGG | 0.605828 | 4_1:+51332916 | Msa0554050:CDS |
GTATCGAACCTAGGTCTCCA+AGG | 0.614417 | 4_1:+51333869 | Msa0554050:three_prime_UTR |
TGCTATTGGAAAGGTCGTTG+AGG | 0.616559 | 4_1:+51332886 | Msa0554050:CDS |
TCGGTTATCCTAGAATCACT+TGG | 0.618627 | 4_1:-51333911 | None:intergenic |
GATGCCTGAAAGATTTCAGA+AGG | 0.625914 | 4_1:+51332913 | Msa0554050:CDS |
ATTTGAGAAATAGTACATGT+CGG | 0.639477 | 4_1:-51333930 | None:intergenic |
AAAGCACATCAAAGAAGTGG+AGG | 0.643108 | 4_1:+51333435 | Msa0554050:CDS |
GATGTGGTGTATGTGGTGCG+GGG | 0.645307 | 4_1:-51332757 | None:intergenic |
TGTGCCAAAGTATCGAACCT+AGG | 0.658410 | 4_1:+51333860 | Msa0554050:three_prime_UTR |
CAACAATAACTATATACACG+TGG | 0.671294 | 4_1:+51332658 | None:intergenic |
TTGCTGGATGGAAACAAGTG+CGG | 0.676967 | 4_1:-51333593 | None:intergenic |
AAATTACCTCAACAGAAACA+AGG | 0.697908 | 4_1:+51333642 | Msa0554050:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAATAAAAATATA+TGG | - | chr4_1:51333839-51333858 | None:intergenic | 0.0% |
!! | AAAAAAAAAATAAAAATATA+TGG | - | chr4_1:51333839-51333858 | None:intergenic | 0.0% |
!!! | TAACATAACATTAATTGTTT+TGG | + | chr4_1:51333345-51333364 | Msa0554050:intron | 15.0% |
!!! | TAACATAACATTAATTGTTT+TGG | + | chr4_1:51333345-51333364 | Msa0554050:intron | 15.0% |
!! | ATGATGAATTAACATACTTA+TGG | + | chr4_1:51333283-51333302 | Msa0554050:intron | 20.0% |
!! | TGATGAATTAACATACTTAT+GGG | + | chr4_1:51333284-51333303 | Msa0554050:intron | 20.0% |
!!! | ATAACATTAATTGTTTTGGT+TGG | + | chr4_1:51333349-51333368 | Msa0554050:intron | 20.0% |
!! | GAATTAATGAAACAAAATGT+TGG | - | chr4_1:51333813-51333832 | None:intergenic | 20.0% |
!! | ATGATGAATTAACATACTTA+TGG | + | chr4_1:51333283-51333302 | Msa0554050:intron | 20.0% |
!! | TGATGAATTAACATACTTAT+GGG | + | chr4_1:51333284-51333303 | Msa0554050:intron | 20.0% |
!!! | ATAACATTAATTGTTTTGGT+TGG | + | chr4_1:51333349-51333368 | Msa0554050:intron | 20.0% |
!! | GAATTAATGAAACAAAATGT+TGG | - | chr4_1:51333813-51333832 | None:intergenic | 20.0% |
! | TATACTTCACATCAAAATTG+TGG | + | chr4_1:51332710-51332729 | Msa0554050:five_prime_UTR | 25.0% |
!! | CTCTTTTACACAAACTATTT+GGG | - | chr4_1:51332782-51332801 | None:intergenic | 25.0% |
!! | TCTCTTTTACACAAACTATT+TGG | - | chr4_1:51332783-51332802 | None:intergenic | 25.0% |
!! | TTGTTGTATCATGAACATTT+TGG | + | chr4_1:51333112-51333131 | Msa0554050:intron | 25.0% |
! | AAATATGTCTATGTACAAGT+GGG | + | chr4_1:51333200-51333219 | Msa0554050:intron | 25.0% |
! | AATCTATAGATTCATGTGTT+TGG | + | chr4_1:51333240-51333259 | Msa0554050:intron | 25.0% |
!! | ACTTTTCTTTTAAACCAGTT+GGG | - | chr4_1:51333396-51333415 | None:intergenic | 25.0% |
!! | AACTTTTCTTTTAAACCAGT+TGG | - | chr4_1:51333397-51333416 | None:intergenic | 25.0% |
! | CTAGAGAAAAGAAAAACTTA+TGG | + | chr4_1:51333708-51333727 | Msa0554050:three_prime_UTR | 25.0% |
! | CATTTCATTCATGAACTAAT+TGG | - | chr4_1:51333772-51333791 | None:intergenic | 25.0% |
! | ATTTGAGAAATAGTACATGT+CGG | - | chr4_1:51333933-51333952 | None:intergenic | 25.0% |
! | TATACTTCACATCAAAATTG+TGG | + | chr4_1:51332710-51332729 | Msa0554050:five_prime_UTR | 25.0% |
!! | CTCTTTTACACAAACTATTT+GGG | - | chr4_1:51332782-51332801 | None:intergenic | 25.0% |
!! | TCTCTTTTACACAAACTATT+TGG | - | chr4_1:51332783-51332802 | None:intergenic | 25.0% |
!! | TTGTTGTATCATGAACATTT+TGG | + | chr4_1:51333112-51333131 | Msa0554050:intron | 25.0% |
! | AAATATGTCTATGTACAAGT+GGG | + | chr4_1:51333200-51333219 | Msa0554050:intron | 25.0% |
! | AATCTATAGATTCATGTGTT+TGG | + | chr4_1:51333240-51333259 | Msa0554050:intron | 25.0% |
!! | ACTTTTCTTTTAAACCAGTT+GGG | - | chr4_1:51333396-51333415 | None:intergenic | 25.0% |
!! | AACTTTTCTTTTAAACCAGT+TGG | - | chr4_1:51333397-51333416 | None:intergenic | 25.0% |
! | CTAGAGAAAAGAAAAACTTA+TGG | + | chr4_1:51333708-51333727 | Msa0554050:three_prime_UTR | 25.0% |
! | CATTTCATTCATGAACTAAT+TGG | - | chr4_1:51333772-51333791 | None:intergenic | 25.0% |
! | ATTTGAGAAATAGTACATGT+CGG | - | chr4_1:51333933-51333952 | None:intergenic | 25.0% |
AAGAGATCAAAGAAGATGTT+TGG | + | chr4_1:51332797-51332816 | Msa0554050:exon | 30.0% | |
GTTTACAATTGATGTTTACC+TGG | - | chr4_1:51332995-51333014 | None:intergenic | 30.0% | |
CAAATATGTCTATGTACAAG+TGG | + | chr4_1:51333199-51333218 | Msa0554050:intron | 30.0% | |
AATATGTCTATGTACAAGTG+GGG | + | chr4_1:51333201-51333220 | Msa0554050:intron | 30.0% | |
! | GTGCTTTTCATTATCAATCT+TGG | - | chr4_1:51333422-51333441 | None:intergenic | 30.0% |
TACATTAGAGTATGAAGTCA+AGG | + | chr4_1:51333552-51333571 | Msa0554050:CDS | 30.0% | |
AAATTACCTCAACAGAAACA+AGG | + | chr4_1:51333642-51333661 | Msa0554050:CDS | 30.0% | |
! | GAAAATTTGTTCTTCAACCT+TGG | - | chr4_1:51333889-51333908 | None:intergenic | 30.0% |
! | ATTTTCAACCAAGTGATTCT+AGG | + | chr4_1:51333903-51333922 | Msa0554050:three_prime_UTR | 30.0% |
AAGAGATCAAAGAAGATGTT+TGG | + | chr4_1:51332797-51332816 | Msa0554050:exon | 30.0% | |
GTTTACAATTGATGTTTACC+TGG | - | chr4_1:51332995-51333014 | None:intergenic | 30.0% | |
CAAATATGTCTATGTACAAG+TGG | + | chr4_1:51333199-51333218 | Msa0554050:intron | 30.0% | |
AATATGTCTATGTACAAGTG+GGG | + | chr4_1:51333201-51333220 | Msa0554050:intron | 30.0% | |
! | GTGCTTTTCATTATCAATCT+TGG | - | chr4_1:51333422-51333441 | None:intergenic | 30.0% |
TACATTAGAGTATGAAGTCA+AGG | + | chr4_1:51333552-51333571 | Msa0554050:CDS | 30.0% | |
AAATTACCTCAACAGAAACA+AGG | + | chr4_1:51333642-51333661 | Msa0554050:CDS | 30.0% | |
! | GAAAATTTGTTCTTCAACCT+TGG | - | chr4_1:51333889-51333908 | None:intergenic | 30.0% |
! | ATTTTCAACCAAGTGATTCT+AGG | + | chr4_1:51333903-51333922 | Msa0554050:three_prime_UTR | 30.0% |
!! | TGGTGTTATGTGTCAAGTTT+AGG | + | chr4_1:51332678-51332697 | Msa0554050:five_prime_UTR | 35.0% |
! | TACACAAACTATTTGGGATG+TGG | - | chr4_1:51332776-51332795 | None:intergenic | 35.0% |
CATTTGATATGCATGGTCAA+CGG | - | chr4_1:51333025-51333044 | None:intergenic | 35.0% | |
GACATCACATTTGATATGCA+TGG | - | chr4_1:51333032-51333051 | None:intergenic | 35.0% | |
CTTCATGAGTCTAACTCAAT+TGG | - | chr4_1:51333059-51333078 | None:intergenic | 35.0% | |
ATATGTCTATGTACAAGTGG+GGG | + | chr4_1:51333202-51333221 | Msa0554050:intron | 35.0% | |
! | TGAAAAGCACATCAAAGAAG+TGG | + | chr4_1:51333432-51333451 | Msa0554050:CDS | 35.0% |
! | CACACTATTTAGAGTTCGTA+TGG | + | chr4_1:51333489-51333508 | Msa0554050:CDS | 35.0% |
!! | TGGTGTTATGTGTCAAGTTT+AGG | + | chr4_1:51332678-51332697 | Msa0554050:five_prime_UTR | 35.0% |
! | TACACAAACTATTTGGGATG+TGG | - | chr4_1:51332776-51332795 | None:intergenic | 35.0% |
CATTTGATATGCATGGTCAA+CGG | - | chr4_1:51333025-51333044 | None:intergenic | 35.0% | |
GACATCACATTTGATATGCA+TGG | - | chr4_1:51333032-51333051 | None:intergenic | 35.0% | |
CTTCATGAGTCTAACTCAAT+TGG | - | chr4_1:51333059-51333078 | None:intergenic | 35.0% | |
ATATGTCTATGTACAAGTGG+GGG | + | chr4_1:51333202-51333221 | Msa0554050:intron | 35.0% | |
! | TGAAAAGCACATCAAAGAAG+TGG | + | chr4_1:51333432-51333451 | Msa0554050:CDS | 35.0% |
! | CACACTATTTAGAGTTCGTA+TGG | + | chr4_1:51333489-51333508 | Msa0554050:CDS | 35.0% |
! | TATTTGGGATGTGGTGTATG+TGG | - | chr4_1:51332767-51332786 | None:intergenic | 40.0% |
GATGCCTGAAAGATTTCAGA+AGG | + | chr4_1:51332913-51332932 | Msa0554050:CDS | 40.0% | |
!! | TCCACCTTCTGAAATCTTTC+AGG | - | chr4_1:51332920-51332939 | None:intergenic | 40.0% |
AGCTAATTGAAGGAGATGGA+GGG | + | chr4_1:51332939-51332958 | Msa0554050:CDS | 40.0% | |
!!! | GTTTTGGTTGGAGTTTGATC+AGG | + | chr4_1:51333361-51333380 | Msa0554050:intron | 40.0% |
AAAGCACATCAAAGAAGTGG+AGG | + | chr4_1:51333435-51333454 | Msa0554050:CDS | 40.0% | |
AAAGAAGTGGAGGTAGTTGA+AGG | + | chr4_1:51333445-51333464 | Msa0554050:CDS | 40.0% | |
AAGAAGTGGAGGTAGTTGAA+GGG | + | chr4_1:51333446-51333465 | Msa0554050:CDS | 40.0% | |
CGTATGGAAGTGATAGAGAA+AGG | + | chr4_1:51333505-51333524 | Msa0554050:CDS | 40.0% | |
AGAGTATGAAGTCAAGGAAG+AGG | + | chr4_1:51333558-51333577 | Msa0554050:CDS | 40.0% | |
ACTTGTTTCCATCCAGCAAT+TGG | + | chr4_1:51333597-51333616 | Msa0554050:CDS | 40.0% | |
TTGGCAGACATTGTAGAAGT+TGG | + | chr4_1:51333616-51333635 | Msa0554050:CDS | 40.0% | |
!! | TTGCATCCTTGTTTCTGTTG+AGG | - | chr4_1:51333651-51333670 | None:intergenic | 40.0% |
TCGGTTATCCTAGAATCACT+TGG | - | chr4_1:51333914-51333933 | None:intergenic | 40.0% | |
! | TATTTGGGATGTGGTGTATG+TGG | - | chr4_1:51332767-51332786 | None:intergenic | 40.0% |
GATGCCTGAAAGATTTCAGA+AGG | + | chr4_1:51332913-51332932 | Msa0554050:CDS | 40.0% | |
!! | TCCACCTTCTGAAATCTTTC+AGG | - | chr4_1:51332920-51332939 | None:intergenic | 40.0% |
AGCTAATTGAAGGAGATGGA+GGG | + | chr4_1:51332939-51332958 | Msa0554050:CDS | 40.0% | |
!!! | GTTTTGGTTGGAGTTTGATC+AGG | + | chr4_1:51333361-51333380 | Msa0554050:intron | 40.0% |
AAAGCACATCAAAGAAGTGG+AGG | + | chr4_1:51333435-51333454 | Msa0554050:CDS | 40.0% | |
AAAGAAGTGGAGGTAGTTGA+AGG | + | chr4_1:51333445-51333464 | Msa0554050:CDS | 40.0% | |
AAGAAGTGGAGGTAGTTGAA+GGG | + | chr4_1:51333446-51333465 | Msa0554050:CDS | 40.0% | |
CGTATGGAAGTGATAGAGAA+AGG | + | chr4_1:51333505-51333524 | Msa0554050:CDS | 40.0% | |
AGAGTATGAAGTCAAGGAAG+AGG | + | chr4_1:51333558-51333577 | Msa0554050:CDS | 40.0% | |
ACTTGTTTCCATCCAGCAAT+TGG | + | chr4_1:51333597-51333616 | Msa0554050:CDS | 40.0% | |
TTGGCAGACATTGTAGAAGT+TGG | + | chr4_1:51333616-51333635 | Msa0554050:CDS | 40.0% | |
!! | TTGCATCCTTGTTTCTGTTG+AGG | - | chr4_1:51333651-51333670 | None:intergenic | 40.0% |
TCGGTTATCCTAGAATCACT+TGG | - | chr4_1:51333914-51333933 | None:intergenic | 40.0% | |
AGTGAAGCATGGGATCTCTT+TGG | + | chr4_1:51332857-51332876 | Msa0554050:CDS | 45.0% | |
! | CTCTTTGGCACTCTTGCTAT+TGG | + | chr4_1:51332872-51332891 | Msa0554050:CDS | 45.0% |
!! | TGGCACTCTTGCTATTGGAA+AGG | + | chr4_1:51332877-51332896 | Msa0554050:CDS | 45.0% |
TGCTATTGGAAAGGTCGTTG+AGG | + | chr4_1:51332886-51332905 | Msa0554050:CDS | 45.0% | |
GCCTGAAAGATTTCAGAAGG+TGG | + | chr4_1:51332916-51332935 | Msa0554050:CDS | 45.0% | |
CAGAAGGTGGAGCTAATTGA+AGG | + | chr4_1:51332929-51332948 | Msa0554050:CDS | 45.0% | |
GTGGAGCTAATTGAAGGAGA+TGG | + | chr4_1:51332935-51332954 | Msa0554050:CDS | 45.0% | |
GAGCTAATTGAAGGAGATGG+AGG | + | chr4_1:51332938-51332957 | Msa0554050:CDS | 45.0% | |
GCTAATTGAAGGAGATGGAG+GGG | + | chr4_1:51332940-51332959 | Msa0554050:CDS | 45.0% | |
CTCAAACTCACATTCACTCC+AGG | + | chr4_1:51332974-51332993 | Msa0554050:CDS | 45.0% | |
TTGATATGCATGGTCAACGG+AGG | - | chr4_1:51333022-51333041 | None:intergenic | 45.0% | |
CTATGTACAAGTGGGGGATT+CGG | + | chr4_1:51333208-51333227 | Msa0554050:intron | 45.0% | |
GGAGTTTGATCAGGTTTACC+TGG | + | chr4_1:51333370-51333389 | Msa0554050:intron | 45.0% | |
! | TCTTTTAAACCAGTTGGGCC+AGG | - | chr4_1:51333391-51333410 | None:intergenic | 45.0% |
AGAAGTGGAGGTAGTTGAAG+GGG | + | chr4_1:51333447-51333466 | Msa0554050:CDS | 45.0% | |
TTGCTGGATGGAAACAAGTG+CGG | - | chr4_1:51333596-51333615 | None:intergenic | 45.0% | |
AATGTCTGCCAATTGCTGGA+TGG | - | chr4_1:51333608-51333627 | None:intergenic | 45.0% | |
CTACAATGTCTGCCAATTGC+TGG | - | chr4_1:51333612-51333631 | None:intergenic | 45.0% | |
!! | TGTGCCAAAGTATCGAACCT+AGG | + | chr4_1:51333860-51333879 | Msa0554050:three_prime_UTR | 45.0% |
GAGACCTAGGTTCGATACTT+TGG | - | chr4_1:51333867-51333886 | None:intergenic | 45.0% | |
TTCTTCAACCTTGGAGACCT+AGG | - | chr4_1:51333880-51333899 | None:intergenic | 45.0% | |
AGTGAAGCATGGGATCTCTT+TGG | + | chr4_1:51332857-51332876 | Msa0554050:CDS | 45.0% | |
! | CTCTTTGGCACTCTTGCTAT+TGG | + | chr4_1:51332872-51332891 | Msa0554050:CDS | 45.0% |
!! | TGGCACTCTTGCTATTGGAA+AGG | + | chr4_1:51332877-51332896 | Msa0554050:CDS | 45.0% |
TGCTATTGGAAAGGTCGTTG+AGG | + | chr4_1:51332886-51332905 | Msa0554050:CDS | 45.0% | |
GCCTGAAAGATTTCAGAAGG+TGG | + | chr4_1:51332916-51332935 | Msa0554050:CDS | 45.0% | |
CAGAAGGTGGAGCTAATTGA+AGG | + | chr4_1:51332929-51332948 | Msa0554050:CDS | 45.0% | |
GTGGAGCTAATTGAAGGAGA+TGG | + | chr4_1:51332935-51332954 | Msa0554050:CDS | 45.0% | |
GAGCTAATTGAAGGAGATGG+AGG | + | chr4_1:51332938-51332957 | Msa0554050:CDS | 45.0% | |
GCTAATTGAAGGAGATGGAG+GGG | + | chr4_1:51332940-51332959 | Msa0554050:CDS | 45.0% | |
CTCAAACTCACATTCACTCC+AGG | + | chr4_1:51332974-51332993 | Msa0554050:CDS | 45.0% | |
TTGATATGCATGGTCAACGG+AGG | - | chr4_1:51333022-51333041 | None:intergenic | 45.0% | |
CTATGTACAAGTGGGGGATT+CGG | + | chr4_1:51333208-51333227 | Msa0554050:intron | 45.0% | |
GGAGTTTGATCAGGTTTACC+TGG | + | chr4_1:51333370-51333389 | Msa0554050:intron | 45.0% | |
! | TCTTTTAAACCAGTTGGGCC+AGG | - | chr4_1:51333391-51333410 | None:intergenic | 45.0% |
AGAAGTGGAGGTAGTTGAAG+GGG | + | chr4_1:51333447-51333466 | Msa0554050:CDS | 45.0% | |
TTGCTGGATGGAAACAAGTG+CGG | - | chr4_1:51333596-51333615 | None:intergenic | 45.0% | |
AATGTCTGCCAATTGCTGGA+TGG | - | chr4_1:51333608-51333627 | None:intergenic | 45.0% | |
CTACAATGTCTGCCAATTGC+TGG | - | chr4_1:51333612-51333631 | None:intergenic | 45.0% | |
!! | TGTGCCAAAGTATCGAACCT+AGG | + | chr4_1:51333860-51333879 | Msa0554050:three_prime_UTR | 45.0% |
GAGACCTAGGTTCGATACTT+TGG | - | chr4_1:51333867-51333886 | None:intergenic | 45.0% | |
TTCTTCAACCTTGGAGACCT+AGG | - | chr4_1:51333880-51333899 | None:intergenic | 45.0% | |
AGATCCCATGCTTCACTTGC+TGG | - | chr4_1:51332854-51332873 | None:intergenic | 50.0% | |
ATTGAAGGAGATGGAGGGGT+TGG | + | chr4_1:51332944-51332963 | Msa0554050:CDS | 50.0% | |
TTGAAGGAGATGGAGGGGTT+GGG | + | chr4_1:51332945-51332964 | Msa0554050:CDS | 50.0% | |
GAAGTGGAGGTAGTTGAAGG+GGG | + | chr4_1:51333448-51333467 | Msa0554050:CDS | 50.0% | |
GAAGGGGGATGCTTAGATCT+TGG | + | chr4_1:51333463-51333482 | Msa0554050:CDS | 50.0% | |
GTATCGAACCTAGGTCTCCA+AGG | + | chr4_1:51333869-51333888 | Msa0554050:three_prime_UTR | 50.0% | |
AGATCCCATGCTTCACTTGC+TGG | - | chr4_1:51332854-51332873 | None:intergenic | 50.0% | |
ATTGAAGGAGATGGAGGGGT+TGG | + | chr4_1:51332944-51332963 | Msa0554050:CDS | 50.0% | |
TTGAAGGAGATGGAGGGGTT+GGG | + | chr4_1:51332945-51332964 | Msa0554050:CDS | 50.0% | |
GAAGTGGAGGTAGTTGAAGG+GGG | + | chr4_1:51333448-51333467 | Msa0554050:CDS | 50.0% | |
GAAGGGGGATGCTTAGATCT+TGG | + | chr4_1:51333463-51333482 | Msa0554050:CDS | 50.0% | |
GTATCGAACCTAGGTCTCCA+AGG | + | chr4_1:51333869-51333888 | Msa0554050:three_prime_UTR | 50.0% | |
GATGTGGTGTATGTGGTGCG+GGG | - | chr4_1:51332760-51332779 | None:intergenic | 55.0% | |
GGATGTGGTGTATGTGGTGC+GGG | - | chr4_1:51332761-51332780 | None:intergenic | 55.0% | |
GGGATGTGGTGTATGTGGTG+CGG | - | chr4_1:51332762-51332781 | None:intergenic | 55.0% | |
ACGTGCCAGCAAGTGAAGCA+TGG | + | chr4_1:51332846-51332865 | Msa0554050:CDS | 55.0% | |
CGTGCCAGCAAGTGAAGCAT+GGG | + | chr4_1:51332847-51332866 | Msa0554050:CDS | 55.0% | |
TCAGGTTTACCTGGCCCAAC+TGG | + | chr4_1:51333379-51333398 | Msa0554050:intron | 55.0% | |
GATGTGGTGTATGTGGTGCG+GGG | - | chr4_1:51332760-51332779 | None:intergenic | 55.0% | |
GGATGTGGTGTATGTGGTGC+GGG | - | chr4_1:51332761-51332780 | None:intergenic | 55.0% | |
GGGATGTGGTGTATGTGGTG+CGG | - | chr4_1:51332762-51332781 | None:intergenic | 55.0% | |
ACGTGCCAGCAAGTGAAGCA+TGG | + | chr4_1:51332846-51332865 | Msa0554050:CDS | 55.0% | |
CGTGCCAGCAAGTGAAGCAT+GGG | + | chr4_1:51332847-51332866 | Msa0554050:CDS | 55.0% | |
TCAGGTTTACCTGGCCCAAC+TGG | + | chr4_1:51333379-51333398 | Msa0554050:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 51332663 | 51333978 | 51332663 | ID=Msa0554050;Name=Msa0554050 |
chr4_1 | mRNA | 51332663 | 51333978 | 51332663 | ID=Msa0554050-mRNA-1;Parent=Msa0554050;Name=Msa0554050-mRNA-1;_AED=0.24;_eAED=0.24;_QI=149|1|1|1|1|1|2|294|161 |
chr4_1 | exon | 51332663 | 51332995 | 51332663 | ID=Msa0554050-mRNA-1:exon:14658;Parent=Msa0554050-mRNA-1 |
chr4_1 | exon | 51333383 | 51333978 | 51333383 | ID=Msa0554050-mRNA-1:exon:14659;Parent=Msa0554050-mRNA-1 |
chr4_1 | five_prime_UTR | 51332663 | 51332811 | 51332663 | ID=Msa0554050-mRNA-1:five_prime_utr;Parent=Msa0554050-mRNA-1 |
chr4_1 | CDS | 51332812 | 51332995 | 51332812 | ID=Msa0554050-mRNA-1:cds;Parent=Msa0554050-mRNA-1 |
chr4_1 | CDS | 51333383 | 51333684 | 51333383 | ID=Msa0554050-mRNA-1:cds;Parent=Msa0554050-mRNA-1 |
chr4_1 | three_prime_UTR | 51333685 | 51333978 | 51333685 | ID=Msa0554050-mRNA-1:three_prime_utr;Parent=Msa0554050-mRNA-1 |
Gene Sequence |
Protein sequence |