AlfalfaGEDB | Msa0554050

M. sativa cultivar zhongmu-4 / Msa0554050

KEGG: -
GO: -
PFAM: PF00407.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554050	XP_013456641.1	97.516	161	4	0	1	161	1	161	6.36e-108	314

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554050	sp\|A0A3G5BB24\|NBS_NARPS	50.735	136	67	0	1	136	1	136	8.52e-45	147

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554050	A0A072ULU0	97.516	161	4	0	1	161	1	161	3.04e-108	314

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015400	Msa0554050	0.805029	1.626009e-49	-8.615850e-47
Msa0096450	Msa0554050	0.803076	4.142736e-49	-8.615850e-47
Msa0116770	Msa0554050	0.808510	2.988738e-50	-8.615850e-47
Msa0131770	Msa0554050	0.806666	7.361477e-50	-8.615850e-47
Msa0158480	Msa0554050	0.807568	4.744313e-50	-8.615850e-47
Msa0165210	Msa0554050	0.819440	1.160103e-52	-8.615850e-47
Msa0170230	Msa0554050	0.813162	2.942795e-51	-8.615850e-47
Msa0171300	Msa0554050	0.843714	1.182596e-58	-8.615850e-47
Msa0178960	Msa0554050	0.802600	5.193719e-49	-8.615850e-47
Msa0179280	Msa0554050	0.803441	3.481785e-49	-8.615850e-47
Msa0212990	Msa0554050	0.808197	3.486707e-50	-8.615850e-47
Msa0214300	Msa0554050	0.801294	9.635589e-49	-8.615850e-47
Msa0394530	Msa0554050	0.822273	2.586827e-53	-8.615850e-47
Msa0395770	Msa0554050	-0.804342	2.262388e-49	-8.615850e-47
Msa0416650	Msa0554050	0.827103	1.881605e-54	-8.615850e-47
Msa0417070	Msa0554050	0.811312	7.455376e-51	-8.615850e-47
Msa0424320	Msa0554050	0.812499	4.110900e-51	-8.615850e-47
Msa0426640	Msa0554050	0.809172	2.157299e-50	-8.615850e-47
Msa0435390	Msa0554050	0.820922	5.310011e-53	-8.615850e-47
Msa0435400	Msa0554050	0.821208	4.561420e-53	-8.615850e-47
Msa0477020	Msa0554050	0.800986	1.113956e-48	-8.615850e-47
Msa0479340	Msa0554050	0.815345	9.693878e-52	-8.615850e-47
Msa0279510	Msa0554050	0.805468	1.315425e-49	-8.615850e-47
Msa0285450	Msa0554050	0.801304	9.592891e-49	-8.615850e-47
Msa0315290	Msa0554050	0.801732	7.837606e-49	-8.615850e-47
Msa0320120	Msa0554050	0.808225	3.439337e-50	-8.615850e-47
Msa0330340	Msa0554050	0.803518	3.354919e-49	-8.615850e-47
Msa0495320	Msa0554050	0.803106	4.083091e-49	-8.615850e-47
Msa0495330	Msa0554050	0.818668	1.738661e-52	-8.615850e-47
Msa0512750	Msa0554050	0.821611	3.683122e-53	-8.615850e-47
Msa0523940	Msa0554050	0.822332	2.506765e-53	-8.615850e-47
Msa0538170	Msa0554050	0.818038	2.414569e-52	-8.615850e-47
Msa0545210	Msa0554050	0.815913	7.245442e-52	-8.615850e-47
Msa0554050	Msa0594560	0.802130	6.492666e-49	-8.615850e-47
Msa0554050	Msa0625190	0.805278	1.442152e-49	-8.615850e-47
Msa0554050	Msa0626410	0.831296	1.809034e-55	-8.615850e-47
Msa0554050	Msa0657970	0.809834	1.555388e-50	-8.615850e-47
Msa0554050	Msa0661650	0.805516	1.285783e-49	-8.615850e-47
Msa0554050	Msa0663380	0.803926	2.760901e-49	-8.615850e-47
Msa0554050	Msa0663440	0.806047	9.944416e-50	-8.615850e-47
Msa0554050	Msa0672570	0.831617	1.507979e-55	-8.615850e-47
Msa0554050	Msa0673450	0.814891	1.223151e-51	-8.615850e-47
Msa0554050	Msa0673460	0.813886	2.039594e-51	-8.615850e-47
Msa0554050	Msa0685900	0.801940	7.102227e-49	-8.615850e-47
Msa0554050	Msa0691010	0.972028	4.206669e-134	-8.615850e-47
Msa0554050	Msa0701010	0.826522	2.590345e-54	-8.615850e-47
Msa0554050	Msa0731940	0.804238	2.377925e-49	-8.615850e-47
Msa0554050	Msa0735170	0.808790	2.604363e-50	-8.615850e-47
Msa0554050	Msa0735660	0.837459	5.134886e-57	-8.615850e-47
Msa0554050	Msa0762360	0.802126	6.505733e-49	-8.615850e-47
Msa0554050	Msa0798430	0.802562	5.290627e-49	-8.615850e-47
Msa0554050	Msa0803300	0.801268	9.753947e-49	-8.615850e-47
Msa0554050	Msa0842650	0.810310	1.228113e-50	-8.615850e-47
Msa0554050	Msa0857640	0.810596	1.065763e-50	-8.615850e-47
Msa0554050	Msa0876580	0.810359	1.198654e-50	-8.615850e-47
Msa0554050	Msa0877250	0.809909	1.498454e-50	-8.615850e-47
Msa0554050	Msa0897330	0.819368	1.204630e-52	-8.615850e-47
Msa0554050	Msa0933100	0.809913	1.495814e-50	-8.615850e-47
Msa0554050	Msa0942200	0.810014	1.423034e-50	-8.615850e-47
Msa0554050	Msa0967580	0.805572	1.251246e-49	-8.615850e-47
Msa0554050	Msa0969520	0.810025	1.414667e-50	-8.615850e-47
Msa0554050	Msa0974070	0.809217	2.109874e-50	-8.615850e-47
Msa0554050	Msa0974080	0.818768	1.649380e-52	-8.615850e-47
Msa0554050	Msa0983090	0.813213	2.867846e-51	-8.615850e-47
Msa0554050	Msa0985560	0.801182	1.015924e-48	-8.615850e-47
Msa0554050	Msa1014540	0.812804	3.526486e-51	-8.615850e-47
Msa0554050	Msa1019000	0.818295	2.111570e-52	-8.615850e-47
Msa0554050	Msa1019150	0.824313	8.638565e-54	-8.615850e-47
Msa0554050	Msa1030970	0.808624	2.826953e-50	-8.615850e-47
Msa0554050	Msa1046280	0.813905	2.019680e-51	-8.615850e-47
Msa0554050	Msa1054990	0.804095	2.546134e-49	-8.615850e-47
Msa0554050	Msa1075220	-0.800385	1.477479e-48	-8.615850e-47
Msa0554050	Msa1075540	0.819456	1.150486e-52	-8.615850e-47
Msa0554050	Msa1082500	0.817719	2.850286e-52	-8.615850e-47
Msa0554050	Msa1083840	0.812855	3.436948e-51	-8.615850e-47
Msa0554050	Msa1089940	0.800359	1.495903e-48	-8.615850e-47
Msa0554050	Msa1090240	0.809715	1.650193e-50	-8.615850e-47
Msa0554050	Msa1091830	0.811024	8.610345e-51	-8.615850e-47
Msa0554050	Msa1100050	0.821233	4.502252e-53	-8.615850e-47
Msa0554050	Msa1113170	0.812464	4.184991e-51	-8.615850e-47
Msa0554050	Msa1121490	0.803353	3.630750e-49	-8.615850e-47
Msa0554050	Msa1129550	0.803019	4.256623e-49	-8.615850e-47
Msa0554050	Msa1135470	0.802722	4.903212e-49	-8.615850e-47
Msa0554050	Msa1137570	0.807351	5.275135e-50	-8.615850e-47
Msa0554050	Msa1142020	0.806905	6.556321e-50	-8.615850e-47
Msa0554050	Msa1147740	0.825205	5.322427e-54	-8.615850e-47
Msa0554050	Msa1162550	-0.807292	5.428141e-50	-8.615850e-47
Msa0554050	Msa1174040	0.801366	9.315402e-49	-8.615850e-47
Msa0554050	Msa1178180	0.813066	3.089900e-51	-8.615850e-47
Msa0554050	Msa1179770	0.800178	1.628142e-48	-8.615850e-47
Msa0554050	Msa1212940	0.801245	9.860815e-49	-8.615850e-47
Msa0554050	Msa1277660	0.810597	1.064801e-50	-8.615850e-47
Msa0554050	Msa1284680	0.845429	4.084584e-59	-8.615850e-47
Msa0554050	Msa1297210	0.809101	2.234867e-50	-8.615850e-47
Msa0554050	Msa1308620	0.806610	7.567809e-50	-8.615850e-47
Msa0554050	Msa1353470	0.805209	1.490722e-49	-8.615850e-47
Msa0554050	Msa1364380	0.808558	2.920350e-50	-8.615850e-47
Msa0554050	Msa1371310	0.806246	9.027987e-50	-8.615850e-47
Msa0554050	Msa1372760	0.817480	3.227212e-52	-8.615850e-47
Msa0554050	Msa1392240	0.803717	3.051375e-49	-8.615850e-47
Msa0554050	Msa1424680	0.800115	1.676507e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0554050	MtrunA17_Chr4g0039921	97.516	161	4	0	1	161	1	161	5.85e-112	314
Msa0554050	MtrunA17_Chr4g0039941	78.395	162	34	1	1	161	1	162	6.75e-88	254
Msa0554050	MtrunA17_Chr3g0100201	38.144	97	58	1	35	129	34	130	2.62e-14	66.2
Msa0554050	MtrunA17_Chr3g0100191	30.693	101	70	0	27	127	26	126	2.70e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 55 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CATTTCATTCATGAACTAAT+TGG	0.210292	4_1:-51333769	None:intergenic
TCCACCTTCTGAAATCTTTC+AGG	0.221004	4_1:-51332917	None:intergenic
CTCTTTGGCACTCTTGCTAT+TGG	0.264799	4_1:+51332872	Msa0554050:CDS
TGGTGTTATGTGTCAAGTTT+AGG	0.334539	4_1:+51332678	Msa0554050:five_prime_UTR
GAAAATTTGTTCTTCAACCT+TGG	0.366123	4_1:-51333886	None:intergenic
AGATCCCATGCTTCACTTGC+TGG	0.373899	4_1:-51332851	None:intergenic
CTACAATGTCTGCCAATTGC+TGG	0.390692	4_1:-51333609	None:intergenic
GGATGTGGTGTATGTGGTGC+GGG	0.398785	4_1:-51332758	None:intergenic
TCAGGTTTACCTGGCCCAAC+TGG	0.416975	4_1:+51333379	Msa0554050:intron
TTGAAGGAGATGGAGGGGTT+GGG	0.418155	4_1:+51332945	Msa0554050:CDS
AAGAGATCAAAGAAGATGTT+TGG	0.421807	4_1:+51332797	Msa0554050:exon
ACTTGTTTCCATCCAGCAAT+TGG	0.424661	4_1:+51333597	Msa0554050:CDS
AGTGAAGCATGGGATCTCTT+TGG	0.449536	4_1:+51332857	Msa0554050:CDS
TTGCATCCTTGTTTCTGTTG+AGG	0.456610	4_1:-51333648	None:intergenic
ATTGAAGGAGATGGAGGGGT+TGG	0.457658	4_1:+51332944	Msa0554050:CDS
GAGACCTAGGTTCGATACTT+TGG	0.473082	4_1:-51333864	None:intergenic
GGAGTTTGATCAGGTTTACC+TGG	0.477722	4_1:+51333370	Msa0554050:intron
TACACAAACTATTTGGGATG+TGG	0.481481	4_1:-51332773	None:intergenic
TTGGCAGACATTGTAGAAGT+TGG	0.481902	4_1:+51333616	Msa0554050:CDS
CACACTATTTAGAGTTCGTA+TGG	0.490157	4_1:+51333489	Msa0554050:CDS
CGTATGGAAGTGATAGAGAA+AGG	0.493358	4_1:+51333505	Msa0554050:CDS
CAGAAGGTGGAGCTAATTGA+AGG	0.500124	4_1:+51332929	Msa0554050:CDS
AAAGAAGTGGAGGTAGTTGA+AGG	0.506304	4_1:+51333445	Msa0554050:CDS
TTCTTCAACCTTGGAGACCT+AGG	0.509081	4_1:-51333877	None:intergenic
GTGGAGCTAATTGAAGGAGA+TGG	0.515580	4_1:+51332935	Msa0554050:CDS
AGAGTATGAAGTCAAGGAAG+AGG	0.520181	4_1:+51333558	Msa0554050:CDS
GAATTAATGAAACAAAATGT+TGG	0.520394	4_1:-51333810	None:intergenic
AAGAAGTGGAGGTAGTTGAA+GGG	0.522228	4_1:+51333446	Msa0554050:CDS
TGGCACTCTTGCTATTGGAA+AGG	0.531710	4_1:+51332877	Msa0554050:CDS
TACATTAGAGTATGAAGTCA+AGG	0.533592	4_1:+51333552	Msa0554050:CDS
AGAAGTGGAGGTAGTTGAAG+GGG	0.538439	4_1:+51333447	Msa0554050:CDS
GAGCTAATTGAAGGAGATGG+AGG	0.540375	4_1:+51332938	Msa0554050:CDS
CGTGCCAGCAAGTGAAGCAT+GGG	0.555967	4_1:+51332847	Msa0554050:CDS
CTCAAACTCACATTCACTCC+AGG	0.556420	4_1:+51332974	Msa0554050:CDS
GGGATGTGGTGTATGTGGTG+CGG	0.562331	4_1:-51332759	None:intergenic
TGAAAAGCACATCAAAGAAG+TGG	0.563701	4_1:+51333432	Msa0554050:CDS
ACGTGCCAGCAAGTGAAGCA+TGG	0.570168	4_1:+51332846	Msa0554050:CDS
TATACTTCACATCAAAATTG+TGG	0.571099	4_1:+51332710	Msa0554050:five_prime_UTR
AGCTAATTGAAGGAGATGGA+GGG	0.580245	4_1:+51332939	Msa0554050:CDS
TATTTGGGATGTGGTGTATG+TGG	0.581504	4_1:-51332764	None:intergenic
GCTAATTGAAGGAGATGGAG+GGG	0.586950	4_1:+51332940	Msa0554050:CDS
AATGTCTGCCAATTGCTGGA+TGG	0.587707	4_1:-51333605	None:intergenic
GAAGTGGAGGTAGTTGAAGG+GGG	0.588145	4_1:+51333448	Msa0554050:CDS
GCCTGAAAGATTTCAGAAGG+TGG	0.605828	4_1:+51332916	Msa0554050:CDS
GTATCGAACCTAGGTCTCCA+AGG	0.614417	4_1:+51333869	Msa0554050:three_prime_UTR
TGCTATTGGAAAGGTCGTTG+AGG	0.616559	4_1:+51332886	Msa0554050:CDS
TCGGTTATCCTAGAATCACT+TGG	0.618627	4_1:-51333911	None:intergenic
GATGCCTGAAAGATTTCAGA+AGG	0.625914	4_1:+51332913	Msa0554050:CDS
ATTTGAGAAATAGTACATGT+CGG	0.639477	4_1:-51333930	None:intergenic
AAAGCACATCAAAGAAGTGG+AGG	0.643108	4_1:+51333435	Msa0554050:CDS
GATGTGGTGTATGTGGTGCG+GGG	0.645307	4_1:-51332757	None:intergenic
TGTGCCAAAGTATCGAACCT+AGG	0.658410	4_1:+51333860	Msa0554050:three_prime_UTR
CAACAATAACTATATACACG+TGG	0.671294	4_1:+51332658	None:intergenic
TTGCTGGATGGAAACAAGTG+CGG	0.676967	4_1:-51333593	None:intergenic
AAATTACCTCAACAGAAACA+AGG	0.697908	4_1:+51333642	Msa0554050:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAAAAAATAAAAATATA+TGG	-	chr4_1:51333839-51333858	None:intergenic	0.0%
!!	AAAAAAAAAATAAAAATATA+TGG	-	chr4_1:51333839-51333858	None:intergenic	0.0%
!!!	TAACATAACATTAATTGTTT+TGG	+	chr4_1:51333345-51333364	Msa0554050:intron	15.0%
!!!	TAACATAACATTAATTGTTT+TGG	+	chr4_1:51333345-51333364	Msa0554050:intron	15.0%
!!	ATGATGAATTAACATACTTA+TGG	+	chr4_1:51333283-51333302	Msa0554050:intron	20.0%
!!	TGATGAATTAACATACTTAT+GGG	+	chr4_1:51333284-51333303	Msa0554050:intron	20.0%
!!!	ATAACATTAATTGTTTTGGT+TGG	+	chr4_1:51333349-51333368	Msa0554050:intron	20.0%
!!	GAATTAATGAAACAAAATGT+TGG	-	chr4_1:51333813-51333832	None:intergenic	20.0%
!!	ATGATGAATTAACATACTTA+TGG	+	chr4_1:51333283-51333302	Msa0554050:intron	20.0%
!!	TGATGAATTAACATACTTAT+GGG	+	chr4_1:51333284-51333303	Msa0554050:intron	20.0%
!!!	ATAACATTAATTGTTTTGGT+TGG	+	chr4_1:51333349-51333368	Msa0554050:intron	20.0%
!!	GAATTAATGAAACAAAATGT+TGG	-	chr4_1:51333813-51333832	None:intergenic	20.0%
!	TATACTTCACATCAAAATTG+TGG	+	chr4_1:51332710-51332729	Msa0554050:five_prime_UTR	25.0%
!!	CTCTTTTACACAAACTATTT+GGG	-	chr4_1:51332782-51332801	None:intergenic	25.0%
!!	TCTCTTTTACACAAACTATT+TGG	-	chr4_1:51332783-51332802	None:intergenic	25.0%
!!	TTGTTGTATCATGAACATTT+TGG	+	chr4_1:51333112-51333131	Msa0554050:intron	25.0%
!	AAATATGTCTATGTACAAGT+GGG	+	chr4_1:51333200-51333219	Msa0554050:intron	25.0%
!	AATCTATAGATTCATGTGTT+TGG	+	chr4_1:51333240-51333259	Msa0554050:intron	25.0%
!!	ACTTTTCTTTTAAACCAGTT+GGG	-	chr4_1:51333396-51333415	None:intergenic	25.0%
!!	AACTTTTCTTTTAAACCAGT+TGG	-	chr4_1:51333397-51333416	None:intergenic	25.0%
!	CTAGAGAAAAGAAAAACTTA+TGG	+	chr4_1:51333708-51333727	Msa0554050:three_prime_UTR	25.0%
!	CATTTCATTCATGAACTAAT+TGG	-	chr4_1:51333772-51333791	None:intergenic	25.0%
!	ATTTGAGAAATAGTACATGT+CGG	-	chr4_1:51333933-51333952	None:intergenic	25.0%
!	TATACTTCACATCAAAATTG+TGG	+	chr4_1:51332710-51332729	Msa0554050:five_prime_UTR	25.0%
!!	CTCTTTTACACAAACTATTT+GGG	-	chr4_1:51332782-51332801	None:intergenic	25.0%
!!	TCTCTTTTACACAAACTATT+TGG	-	chr4_1:51332783-51332802	None:intergenic	25.0%
!!	TTGTTGTATCATGAACATTT+TGG	+	chr4_1:51333112-51333131	Msa0554050:intron	25.0%
!	AAATATGTCTATGTACAAGT+GGG	+	chr4_1:51333200-51333219	Msa0554050:intron	25.0%
!	AATCTATAGATTCATGTGTT+TGG	+	chr4_1:51333240-51333259	Msa0554050:intron	25.0%
!!	ACTTTTCTTTTAAACCAGTT+GGG	-	chr4_1:51333396-51333415	None:intergenic	25.0%
!!	AACTTTTCTTTTAAACCAGT+TGG	-	chr4_1:51333397-51333416	None:intergenic	25.0%
!	CTAGAGAAAAGAAAAACTTA+TGG	+	chr4_1:51333708-51333727	Msa0554050:three_prime_UTR	25.0%
!	CATTTCATTCATGAACTAAT+TGG	-	chr4_1:51333772-51333791	None:intergenic	25.0%
!	ATTTGAGAAATAGTACATGT+CGG	-	chr4_1:51333933-51333952	None:intergenic	25.0%
	AAGAGATCAAAGAAGATGTT+TGG	+	chr4_1:51332797-51332816	Msa0554050:exon	30.0%
	GTTTACAATTGATGTTTACC+TGG	-	chr4_1:51332995-51333014	None:intergenic	30.0%
	CAAATATGTCTATGTACAAG+TGG	+	chr4_1:51333199-51333218	Msa0554050:intron	30.0%
	AATATGTCTATGTACAAGTG+GGG	+	chr4_1:51333201-51333220	Msa0554050:intron	30.0%
!	GTGCTTTTCATTATCAATCT+TGG	-	chr4_1:51333422-51333441	None:intergenic	30.0%
	TACATTAGAGTATGAAGTCA+AGG	+	chr4_1:51333552-51333571	Msa0554050:CDS	30.0%
	AAATTACCTCAACAGAAACA+AGG	+	chr4_1:51333642-51333661	Msa0554050:CDS	30.0%
!	GAAAATTTGTTCTTCAACCT+TGG	-	chr4_1:51333889-51333908	None:intergenic	30.0%
!	ATTTTCAACCAAGTGATTCT+AGG	+	chr4_1:51333903-51333922	Msa0554050:three_prime_UTR	30.0%
	AAGAGATCAAAGAAGATGTT+TGG	+	chr4_1:51332797-51332816	Msa0554050:exon	30.0%
	GTTTACAATTGATGTTTACC+TGG	-	chr4_1:51332995-51333014	None:intergenic	30.0%
	CAAATATGTCTATGTACAAG+TGG	+	chr4_1:51333199-51333218	Msa0554050:intron	30.0%
	AATATGTCTATGTACAAGTG+GGG	+	chr4_1:51333201-51333220	Msa0554050:intron	30.0%
!	GTGCTTTTCATTATCAATCT+TGG	-	chr4_1:51333422-51333441	None:intergenic	30.0%
	TACATTAGAGTATGAAGTCA+AGG	+	chr4_1:51333552-51333571	Msa0554050:CDS	30.0%
	AAATTACCTCAACAGAAACA+AGG	+	chr4_1:51333642-51333661	Msa0554050:CDS	30.0%
!	GAAAATTTGTTCTTCAACCT+TGG	-	chr4_1:51333889-51333908	None:intergenic	30.0%
!	ATTTTCAACCAAGTGATTCT+AGG	+	chr4_1:51333903-51333922	Msa0554050:three_prime_UTR	30.0%
!!	TGGTGTTATGTGTCAAGTTT+AGG	+	chr4_1:51332678-51332697	Msa0554050:five_prime_UTR	35.0%
!	TACACAAACTATTTGGGATG+TGG	-	chr4_1:51332776-51332795	None:intergenic	35.0%
	CATTTGATATGCATGGTCAA+CGG	-	chr4_1:51333025-51333044	None:intergenic	35.0%
	GACATCACATTTGATATGCA+TGG	-	chr4_1:51333032-51333051	None:intergenic	35.0%
	CTTCATGAGTCTAACTCAAT+TGG	-	chr4_1:51333059-51333078	None:intergenic	35.0%
	ATATGTCTATGTACAAGTGG+GGG	+	chr4_1:51333202-51333221	Msa0554050:intron	35.0%
!	TGAAAAGCACATCAAAGAAG+TGG	+	chr4_1:51333432-51333451	Msa0554050:CDS	35.0%
!	CACACTATTTAGAGTTCGTA+TGG	+	chr4_1:51333489-51333508	Msa0554050:CDS	35.0%
!!	TGGTGTTATGTGTCAAGTTT+AGG	+	chr4_1:51332678-51332697	Msa0554050:five_prime_UTR	35.0%
!	TACACAAACTATTTGGGATG+TGG	-	chr4_1:51332776-51332795	None:intergenic	35.0%
	CATTTGATATGCATGGTCAA+CGG	-	chr4_1:51333025-51333044	None:intergenic	35.0%
	GACATCACATTTGATATGCA+TGG	-	chr4_1:51333032-51333051	None:intergenic	35.0%
	CTTCATGAGTCTAACTCAAT+TGG	-	chr4_1:51333059-51333078	None:intergenic	35.0%
	ATATGTCTATGTACAAGTGG+GGG	+	chr4_1:51333202-51333221	Msa0554050:intron	35.0%
!	TGAAAAGCACATCAAAGAAG+TGG	+	chr4_1:51333432-51333451	Msa0554050:CDS	35.0%
!	CACACTATTTAGAGTTCGTA+TGG	+	chr4_1:51333489-51333508	Msa0554050:CDS	35.0%
!	TATTTGGGATGTGGTGTATG+TGG	-	chr4_1:51332767-51332786	None:intergenic	40.0%
	GATGCCTGAAAGATTTCAGA+AGG	+	chr4_1:51332913-51332932	Msa0554050:CDS	40.0%
!!	TCCACCTTCTGAAATCTTTC+AGG	-	chr4_1:51332920-51332939	None:intergenic	40.0%
	AGCTAATTGAAGGAGATGGA+GGG	+	chr4_1:51332939-51332958	Msa0554050:CDS	40.0%
!!!	GTTTTGGTTGGAGTTTGATC+AGG	+	chr4_1:51333361-51333380	Msa0554050:intron	40.0%
	AAAGCACATCAAAGAAGTGG+AGG	+	chr4_1:51333435-51333454	Msa0554050:CDS	40.0%
	AAAGAAGTGGAGGTAGTTGA+AGG	+	chr4_1:51333445-51333464	Msa0554050:CDS	40.0%
	AAGAAGTGGAGGTAGTTGAA+GGG	+	chr4_1:51333446-51333465	Msa0554050:CDS	40.0%
	CGTATGGAAGTGATAGAGAA+AGG	+	chr4_1:51333505-51333524	Msa0554050:CDS	40.0%
	AGAGTATGAAGTCAAGGAAG+AGG	+	chr4_1:51333558-51333577	Msa0554050:CDS	40.0%
	ACTTGTTTCCATCCAGCAAT+TGG	+	chr4_1:51333597-51333616	Msa0554050:CDS	40.0%
	TTGGCAGACATTGTAGAAGT+TGG	+	chr4_1:51333616-51333635	Msa0554050:CDS	40.0%
!!	TTGCATCCTTGTTTCTGTTG+AGG	-	chr4_1:51333651-51333670	None:intergenic	40.0%
	TCGGTTATCCTAGAATCACT+TGG	-	chr4_1:51333914-51333933	None:intergenic	40.0%
!	TATTTGGGATGTGGTGTATG+TGG	-	chr4_1:51332767-51332786	None:intergenic	40.0%
	GATGCCTGAAAGATTTCAGA+AGG	+	chr4_1:51332913-51332932	Msa0554050:CDS	40.0%
!!	TCCACCTTCTGAAATCTTTC+AGG	-	chr4_1:51332920-51332939	None:intergenic	40.0%
	AGCTAATTGAAGGAGATGGA+GGG	+	chr4_1:51332939-51332958	Msa0554050:CDS	40.0%
!!!	GTTTTGGTTGGAGTTTGATC+AGG	+	chr4_1:51333361-51333380	Msa0554050:intron	40.0%
	AAAGCACATCAAAGAAGTGG+AGG	+	chr4_1:51333435-51333454	Msa0554050:CDS	40.0%
	AAAGAAGTGGAGGTAGTTGA+AGG	+	chr4_1:51333445-51333464	Msa0554050:CDS	40.0%
	AAGAAGTGGAGGTAGTTGAA+GGG	+	chr4_1:51333446-51333465	Msa0554050:CDS	40.0%
	CGTATGGAAGTGATAGAGAA+AGG	+	chr4_1:51333505-51333524	Msa0554050:CDS	40.0%
	AGAGTATGAAGTCAAGGAAG+AGG	+	chr4_1:51333558-51333577	Msa0554050:CDS	40.0%
	ACTTGTTTCCATCCAGCAAT+TGG	+	chr4_1:51333597-51333616	Msa0554050:CDS	40.0%
	TTGGCAGACATTGTAGAAGT+TGG	+	chr4_1:51333616-51333635	Msa0554050:CDS	40.0%
!!	TTGCATCCTTGTTTCTGTTG+AGG	-	chr4_1:51333651-51333670	None:intergenic	40.0%
	TCGGTTATCCTAGAATCACT+TGG	-	chr4_1:51333914-51333933	None:intergenic	40.0%
	AGTGAAGCATGGGATCTCTT+TGG	+	chr4_1:51332857-51332876	Msa0554050:CDS	45.0%
!	CTCTTTGGCACTCTTGCTAT+TGG	+	chr4_1:51332872-51332891	Msa0554050:CDS	45.0%
!!	TGGCACTCTTGCTATTGGAA+AGG	+	chr4_1:51332877-51332896	Msa0554050:CDS	45.0%
	TGCTATTGGAAAGGTCGTTG+AGG	+	chr4_1:51332886-51332905	Msa0554050:CDS	45.0%
	GCCTGAAAGATTTCAGAAGG+TGG	+	chr4_1:51332916-51332935	Msa0554050:CDS	45.0%
	CAGAAGGTGGAGCTAATTGA+AGG	+	chr4_1:51332929-51332948	Msa0554050:CDS	45.0%
	GTGGAGCTAATTGAAGGAGA+TGG	+	chr4_1:51332935-51332954	Msa0554050:CDS	45.0%
	GAGCTAATTGAAGGAGATGG+AGG	+	chr4_1:51332938-51332957	Msa0554050:CDS	45.0%
	GCTAATTGAAGGAGATGGAG+GGG	+	chr4_1:51332940-51332959	Msa0554050:CDS	45.0%
	CTCAAACTCACATTCACTCC+AGG	+	chr4_1:51332974-51332993	Msa0554050:CDS	45.0%
	TTGATATGCATGGTCAACGG+AGG	-	chr4_1:51333022-51333041	None:intergenic	45.0%
	CTATGTACAAGTGGGGGATT+CGG	+	chr4_1:51333208-51333227	Msa0554050:intron	45.0%
	GGAGTTTGATCAGGTTTACC+TGG	+	chr4_1:51333370-51333389	Msa0554050:intron	45.0%
!	TCTTTTAAACCAGTTGGGCC+AGG	-	chr4_1:51333391-51333410	None:intergenic	45.0%
	AGAAGTGGAGGTAGTTGAAG+GGG	+	chr4_1:51333447-51333466	Msa0554050:CDS	45.0%
	TTGCTGGATGGAAACAAGTG+CGG	-	chr4_1:51333596-51333615	None:intergenic	45.0%
	AATGTCTGCCAATTGCTGGA+TGG	-	chr4_1:51333608-51333627	None:intergenic	45.0%
	CTACAATGTCTGCCAATTGC+TGG	-	chr4_1:51333612-51333631	None:intergenic	45.0%
!!	TGTGCCAAAGTATCGAACCT+AGG	+	chr4_1:51333860-51333879	Msa0554050:three_prime_UTR	45.0%
	GAGACCTAGGTTCGATACTT+TGG	-	chr4_1:51333867-51333886	None:intergenic	45.0%
	TTCTTCAACCTTGGAGACCT+AGG	-	chr4_1:51333880-51333899	None:intergenic	45.0%
	AGTGAAGCATGGGATCTCTT+TGG	+	chr4_1:51332857-51332876	Msa0554050:CDS	45.0%
!	CTCTTTGGCACTCTTGCTAT+TGG	+	chr4_1:51332872-51332891	Msa0554050:CDS	45.0%
!!	TGGCACTCTTGCTATTGGAA+AGG	+	chr4_1:51332877-51332896	Msa0554050:CDS	45.0%
	TGCTATTGGAAAGGTCGTTG+AGG	+	chr4_1:51332886-51332905	Msa0554050:CDS	45.0%
	GCCTGAAAGATTTCAGAAGG+TGG	+	chr4_1:51332916-51332935	Msa0554050:CDS	45.0%
	CAGAAGGTGGAGCTAATTGA+AGG	+	chr4_1:51332929-51332948	Msa0554050:CDS	45.0%
	GTGGAGCTAATTGAAGGAGA+TGG	+	chr4_1:51332935-51332954	Msa0554050:CDS	45.0%
	GAGCTAATTGAAGGAGATGG+AGG	+	chr4_1:51332938-51332957	Msa0554050:CDS	45.0%
	GCTAATTGAAGGAGATGGAG+GGG	+	chr4_1:51332940-51332959	Msa0554050:CDS	45.0%
	CTCAAACTCACATTCACTCC+AGG	+	chr4_1:51332974-51332993	Msa0554050:CDS	45.0%
	TTGATATGCATGGTCAACGG+AGG	-	chr4_1:51333022-51333041	None:intergenic	45.0%
	CTATGTACAAGTGGGGGATT+CGG	+	chr4_1:51333208-51333227	Msa0554050:intron	45.0%
	GGAGTTTGATCAGGTTTACC+TGG	+	chr4_1:51333370-51333389	Msa0554050:intron	45.0%
!	TCTTTTAAACCAGTTGGGCC+AGG	-	chr4_1:51333391-51333410	None:intergenic	45.0%
	AGAAGTGGAGGTAGTTGAAG+GGG	+	chr4_1:51333447-51333466	Msa0554050:CDS	45.0%
	TTGCTGGATGGAAACAAGTG+CGG	-	chr4_1:51333596-51333615	None:intergenic	45.0%
	AATGTCTGCCAATTGCTGGA+TGG	-	chr4_1:51333608-51333627	None:intergenic	45.0%
	CTACAATGTCTGCCAATTGC+TGG	-	chr4_1:51333612-51333631	None:intergenic	45.0%
!!	TGTGCCAAAGTATCGAACCT+AGG	+	chr4_1:51333860-51333879	Msa0554050:three_prime_UTR	45.0%
	GAGACCTAGGTTCGATACTT+TGG	-	chr4_1:51333867-51333886	None:intergenic	45.0%
	TTCTTCAACCTTGGAGACCT+AGG	-	chr4_1:51333880-51333899	None:intergenic	45.0%
	AGATCCCATGCTTCACTTGC+TGG	-	chr4_1:51332854-51332873	None:intergenic	50.0%
	ATTGAAGGAGATGGAGGGGT+TGG	+	chr4_1:51332944-51332963	Msa0554050:CDS	50.0%
	TTGAAGGAGATGGAGGGGTT+GGG	+	chr4_1:51332945-51332964	Msa0554050:CDS	50.0%
	GAAGTGGAGGTAGTTGAAGG+GGG	+	chr4_1:51333448-51333467	Msa0554050:CDS	50.0%
	GAAGGGGGATGCTTAGATCT+TGG	+	chr4_1:51333463-51333482	Msa0554050:CDS	50.0%
	GTATCGAACCTAGGTCTCCA+AGG	+	chr4_1:51333869-51333888	Msa0554050:three_prime_UTR	50.0%
	AGATCCCATGCTTCACTTGC+TGG	-	chr4_1:51332854-51332873	None:intergenic	50.0%
	ATTGAAGGAGATGGAGGGGT+TGG	+	chr4_1:51332944-51332963	Msa0554050:CDS	50.0%
	TTGAAGGAGATGGAGGGGTT+GGG	+	chr4_1:51332945-51332964	Msa0554050:CDS	50.0%
	GAAGTGGAGGTAGTTGAAGG+GGG	+	chr4_1:51333448-51333467	Msa0554050:CDS	50.0%
	GAAGGGGGATGCTTAGATCT+TGG	+	chr4_1:51333463-51333482	Msa0554050:CDS	50.0%
	GTATCGAACCTAGGTCTCCA+AGG	+	chr4_1:51333869-51333888	Msa0554050:three_prime_UTR	50.0%
	GATGTGGTGTATGTGGTGCG+GGG	-	chr4_1:51332760-51332779	None:intergenic	55.0%
	GGATGTGGTGTATGTGGTGC+GGG	-	chr4_1:51332761-51332780	None:intergenic	55.0%
	GGGATGTGGTGTATGTGGTG+CGG	-	chr4_1:51332762-51332781	None:intergenic	55.0%
	ACGTGCCAGCAAGTGAAGCA+TGG	+	chr4_1:51332846-51332865	Msa0554050:CDS	55.0%
	CGTGCCAGCAAGTGAAGCAT+GGG	+	chr4_1:51332847-51332866	Msa0554050:CDS	55.0%
	TCAGGTTTACCTGGCCCAAC+TGG	+	chr4_1:51333379-51333398	Msa0554050:intron	55.0%
	GATGTGGTGTATGTGGTGCG+GGG	-	chr4_1:51332760-51332779	None:intergenic	55.0%
	GGATGTGGTGTATGTGGTGC+GGG	-	chr4_1:51332761-51332780	None:intergenic	55.0%
	GGGATGTGGTGTATGTGGTG+CGG	-	chr4_1:51332762-51332781	None:intergenic	55.0%
	ACGTGCCAGCAAGTGAAGCA+TGG	+	chr4_1:51332846-51332865	Msa0554050:CDS	55.0%
	CGTGCCAGCAAGTGAAGCAT+GGG	+	chr4_1:51332847-51332866	Msa0554050:CDS	55.0%
	TCAGGTTTACCTGGCCCAAC+TGG	+	chr4_1:51333379-51333398	Msa0554050:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	51332663	51333978	51332663	ID=Msa0554050;Name=Msa0554050
chr4_1	mRNA	51332663	51333978	51332663	ID=Msa0554050-mRNA-1;Parent=Msa0554050;Name=Msa0554050-mRNA-1;_AED=0.24;_eAED=0.24;_QI=149\|1\|1\|1\|1\|1\|2\|294\|161
chr4_1	exon	51332663	51332995	51332663	ID=Msa0554050-mRNA-1:exon:14658;Parent=Msa0554050-mRNA-1
chr4_1	exon	51333383	51333978	51333383	ID=Msa0554050-mRNA-1:exon:14659;Parent=Msa0554050-mRNA-1
chr4_1	five_prime_UTR	51332663	51332811	51332663	ID=Msa0554050-mRNA-1:five_prime_utr;Parent=Msa0554050-mRNA-1
chr4_1	CDS	51332812	51332995	51332812	ID=Msa0554050-mRNA-1:cds;Parent=Msa0554050-mRNA-1
chr4_1	CDS	51333383	51333684	51333383	ID=Msa0554050-mRNA-1:cds;Parent=Msa0554050-mRNA-1
chr4_1	three_prime_UTR	51333685	51333978	51333685	ID=Msa0554050-mRNA-1:three_prime_utr;Parent=Msa0554050-mRNA-1

Gene Sequence

>Msa0554050

ATGTTTGGTCAACTTGAGCATGAGTTAGAGCTGCACGTGCCAGCAAGTGAAGCATGGGATCTCTTTGGCACTCTTGCTATTGGAAAGGTCGTTGAGGAACAGATGCCTGAAAGATTTCAGAAGGTGGAGCTAATTGAAGGAGATGGAGGGGTTGGGACTATTCTCAAACTCACATTCACTCCAGGTTTACCTGGCCCAACTGGTTTAAAAGAAAAGTTCACCAAGATTGATAATGAAAAGCACATCAAAGAAGTGGAGGTAGTTGAAGGGGGATGCTTAGATCTTGGATTCACACTATTTAGAGTTCGTATGGAAGTGATAGAGAAAGGTAAAGATTCAAGCATAATCAAAACTACATTAGAGTATGAAGTCAAGGAAGAGGAAGCAGCTAATGCCGCACTTGTTTCCATCCAGCAATTGGCAGACATTGTAGAAGTTGGCAAAAATTACCTCAACAGAAACAAGGATGCAAAAGAAGTAAAGTAG

Protein sequence

>Msa0554050

MFGQLEHELELHVPASEAWDLFGTLAIGKVVEEQMPERFQKVELIEGDGGVGTILKLTFTPGLPGPTGLKEKFTKIDNEKHIKEVEVVEGGCLDLGFTLFRVRMEVIEKGKDSSIIKTTLEYEVKEEEAANAALVSIQQLADIVEVGKNYLNRNKDAKEVK*