AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0554050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0554050 MtrunA17_Chr4g0039921 97.516 161 4 0 1 161 1 161 5.85e-112 314
Msa0554050 MtrunA17_Chr4g0039941 78.395 162 34 1 1 161 1 162 6.75e-88 254
Msa0554050 MtrunA17_Chr3g0100201 38.144 97 58 1 35 129 34 130 2.62e-14 66.2
Msa0554050 MtrunA17_Chr3g0100191 30.693 101 70 0 27 127 26 126 2.70e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 55 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTCATTCATGAACTAAT+TGG 0.210292 4_1:-51333769 None:intergenic
TCCACCTTCTGAAATCTTTC+AGG 0.221004 4_1:-51332917 None:intergenic
CTCTTTGGCACTCTTGCTAT+TGG 0.264799 4_1:+51332872 Msa0554050:CDS
TGGTGTTATGTGTCAAGTTT+AGG 0.334539 4_1:+51332678 Msa0554050:five_prime_UTR
GAAAATTTGTTCTTCAACCT+TGG 0.366123 4_1:-51333886 None:intergenic
AGATCCCATGCTTCACTTGC+TGG 0.373899 4_1:-51332851 None:intergenic
CTACAATGTCTGCCAATTGC+TGG 0.390692 4_1:-51333609 None:intergenic
GGATGTGGTGTATGTGGTGC+GGG 0.398785 4_1:-51332758 None:intergenic
TCAGGTTTACCTGGCCCAAC+TGG 0.416975 4_1:+51333379 Msa0554050:intron
TTGAAGGAGATGGAGGGGTT+GGG 0.418155 4_1:+51332945 Msa0554050:CDS
AAGAGATCAAAGAAGATGTT+TGG 0.421807 4_1:+51332797 Msa0554050:exon
ACTTGTTTCCATCCAGCAAT+TGG 0.424661 4_1:+51333597 Msa0554050:CDS
AGTGAAGCATGGGATCTCTT+TGG 0.449536 4_1:+51332857 Msa0554050:CDS
TTGCATCCTTGTTTCTGTTG+AGG 0.456610 4_1:-51333648 None:intergenic
ATTGAAGGAGATGGAGGGGT+TGG 0.457658 4_1:+51332944 Msa0554050:CDS
GAGACCTAGGTTCGATACTT+TGG 0.473082 4_1:-51333864 None:intergenic
GGAGTTTGATCAGGTTTACC+TGG 0.477722 4_1:+51333370 Msa0554050:intron
TACACAAACTATTTGGGATG+TGG 0.481481 4_1:-51332773 None:intergenic
TTGGCAGACATTGTAGAAGT+TGG 0.481902 4_1:+51333616 Msa0554050:CDS
CACACTATTTAGAGTTCGTA+TGG 0.490157 4_1:+51333489 Msa0554050:CDS
CGTATGGAAGTGATAGAGAA+AGG 0.493358 4_1:+51333505 Msa0554050:CDS
CAGAAGGTGGAGCTAATTGA+AGG 0.500124 4_1:+51332929 Msa0554050:CDS
AAAGAAGTGGAGGTAGTTGA+AGG 0.506304 4_1:+51333445 Msa0554050:CDS
TTCTTCAACCTTGGAGACCT+AGG 0.509081 4_1:-51333877 None:intergenic
GTGGAGCTAATTGAAGGAGA+TGG 0.515580 4_1:+51332935 Msa0554050:CDS
AGAGTATGAAGTCAAGGAAG+AGG 0.520181 4_1:+51333558 Msa0554050:CDS
GAATTAATGAAACAAAATGT+TGG 0.520394 4_1:-51333810 None:intergenic
AAGAAGTGGAGGTAGTTGAA+GGG 0.522228 4_1:+51333446 Msa0554050:CDS
TGGCACTCTTGCTATTGGAA+AGG 0.531710 4_1:+51332877 Msa0554050:CDS
TACATTAGAGTATGAAGTCA+AGG 0.533592 4_1:+51333552 Msa0554050:CDS
AGAAGTGGAGGTAGTTGAAG+GGG 0.538439 4_1:+51333447 Msa0554050:CDS
GAGCTAATTGAAGGAGATGG+AGG 0.540375 4_1:+51332938 Msa0554050:CDS
CGTGCCAGCAAGTGAAGCAT+GGG 0.555967 4_1:+51332847 Msa0554050:CDS
CTCAAACTCACATTCACTCC+AGG 0.556420 4_1:+51332974 Msa0554050:CDS
GGGATGTGGTGTATGTGGTG+CGG 0.562331 4_1:-51332759 None:intergenic
TGAAAAGCACATCAAAGAAG+TGG 0.563701 4_1:+51333432 Msa0554050:CDS
ACGTGCCAGCAAGTGAAGCA+TGG 0.570168 4_1:+51332846 Msa0554050:CDS
TATACTTCACATCAAAATTG+TGG 0.571099 4_1:+51332710 Msa0554050:five_prime_UTR
AGCTAATTGAAGGAGATGGA+GGG 0.580245 4_1:+51332939 Msa0554050:CDS
TATTTGGGATGTGGTGTATG+TGG 0.581504 4_1:-51332764 None:intergenic
GCTAATTGAAGGAGATGGAG+GGG 0.586950 4_1:+51332940 Msa0554050:CDS
AATGTCTGCCAATTGCTGGA+TGG 0.587707 4_1:-51333605 None:intergenic
GAAGTGGAGGTAGTTGAAGG+GGG 0.588145 4_1:+51333448 Msa0554050:CDS
GCCTGAAAGATTTCAGAAGG+TGG 0.605828 4_1:+51332916 Msa0554050:CDS
GTATCGAACCTAGGTCTCCA+AGG 0.614417 4_1:+51333869 Msa0554050:three_prime_UTR
TGCTATTGGAAAGGTCGTTG+AGG 0.616559 4_1:+51332886 Msa0554050:CDS
TCGGTTATCCTAGAATCACT+TGG 0.618627 4_1:-51333911 None:intergenic
GATGCCTGAAAGATTTCAGA+AGG 0.625914 4_1:+51332913 Msa0554050:CDS
ATTTGAGAAATAGTACATGT+CGG 0.639477 4_1:-51333930 None:intergenic
AAAGCACATCAAAGAAGTGG+AGG 0.643108 4_1:+51333435 Msa0554050:CDS
GATGTGGTGTATGTGGTGCG+GGG 0.645307 4_1:-51332757 None:intergenic
TGTGCCAAAGTATCGAACCT+AGG 0.658410 4_1:+51333860 Msa0554050:three_prime_UTR
CAACAATAACTATATACACG+TGG 0.671294 4_1:+51332658 None:intergenic
TTGCTGGATGGAAACAAGTG+CGG 0.676967 4_1:-51333593 None:intergenic
AAATTACCTCAACAGAAACA+AGG 0.697908 4_1:+51333642 Msa0554050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATAAAAATATA+TGG - chr4_1:51333839-51333858 None:intergenic 0.0%
!! AAAAAAAAAATAAAAATATA+TGG - chr4_1:51333839-51333858 None:intergenic 0.0%
!!! TAACATAACATTAATTGTTT+TGG + chr4_1:51333345-51333364 Msa0554050:intron 15.0%
!!! TAACATAACATTAATTGTTT+TGG + chr4_1:51333345-51333364 Msa0554050:intron 15.0%
!! ATGATGAATTAACATACTTA+TGG + chr4_1:51333283-51333302 Msa0554050:intron 20.0%
!! TGATGAATTAACATACTTAT+GGG + chr4_1:51333284-51333303 Msa0554050:intron 20.0%
!!! ATAACATTAATTGTTTTGGT+TGG + chr4_1:51333349-51333368 Msa0554050:intron 20.0%
!! GAATTAATGAAACAAAATGT+TGG - chr4_1:51333813-51333832 None:intergenic 20.0%
!! ATGATGAATTAACATACTTA+TGG + chr4_1:51333283-51333302 Msa0554050:intron 20.0%
!! TGATGAATTAACATACTTAT+GGG + chr4_1:51333284-51333303 Msa0554050:intron 20.0%
!!! ATAACATTAATTGTTTTGGT+TGG + chr4_1:51333349-51333368 Msa0554050:intron 20.0%
!! GAATTAATGAAACAAAATGT+TGG - chr4_1:51333813-51333832 None:intergenic 20.0%
! TATACTTCACATCAAAATTG+TGG + chr4_1:51332710-51332729 Msa0554050:five_prime_UTR 25.0%
!! CTCTTTTACACAAACTATTT+GGG - chr4_1:51332782-51332801 None:intergenic 25.0%
!! TCTCTTTTACACAAACTATT+TGG - chr4_1:51332783-51332802 None:intergenic 25.0%
!! TTGTTGTATCATGAACATTT+TGG + chr4_1:51333112-51333131 Msa0554050:intron 25.0%
! AAATATGTCTATGTACAAGT+GGG + chr4_1:51333200-51333219 Msa0554050:intron 25.0%
! AATCTATAGATTCATGTGTT+TGG + chr4_1:51333240-51333259 Msa0554050:intron 25.0%
!! ACTTTTCTTTTAAACCAGTT+GGG - chr4_1:51333396-51333415 None:intergenic 25.0%
!! AACTTTTCTTTTAAACCAGT+TGG - chr4_1:51333397-51333416 None:intergenic 25.0%
! CTAGAGAAAAGAAAAACTTA+TGG + chr4_1:51333708-51333727 Msa0554050:three_prime_UTR 25.0%
! CATTTCATTCATGAACTAAT+TGG - chr4_1:51333772-51333791 None:intergenic 25.0%
! ATTTGAGAAATAGTACATGT+CGG - chr4_1:51333933-51333952 None:intergenic 25.0%
! TATACTTCACATCAAAATTG+TGG + chr4_1:51332710-51332729 Msa0554050:five_prime_UTR 25.0%
!! CTCTTTTACACAAACTATTT+GGG - chr4_1:51332782-51332801 None:intergenic 25.0%
!! TCTCTTTTACACAAACTATT+TGG - chr4_1:51332783-51332802 None:intergenic 25.0%
!! TTGTTGTATCATGAACATTT+TGG + chr4_1:51333112-51333131 Msa0554050:intron 25.0%
! AAATATGTCTATGTACAAGT+GGG + chr4_1:51333200-51333219 Msa0554050:intron 25.0%
! AATCTATAGATTCATGTGTT+TGG + chr4_1:51333240-51333259 Msa0554050:intron 25.0%
!! ACTTTTCTTTTAAACCAGTT+GGG - chr4_1:51333396-51333415 None:intergenic 25.0%
!! AACTTTTCTTTTAAACCAGT+TGG - chr4_1:51333397-51333416 None:intergenic 25.0%
! CTAGAGAAAAGAAAAACTTA+TGG + chr4_1:51333708-51333727 Msa0554050:three_prime_UTR 25.0%
! CATTTCATTCATGAACTAAT+TGG - chr4_1:51333772-51333791 None:intergenic 25.0%
! ATTTGAGAAATAGTACATGT+CGG - chr4_1:51333933-51333952 None:intergenic 25.0%
AAGAGATCAAAGAAGATGTT+TGG + chr4_1:51332797-51332816 Msa0554050:exon 30.0%
GTTTACAATTGATGTTTACC+TGG - chr4_1:51332995-51333014 None:intergenic 30.0%
CAAATATGTCTATGTACAAG+TGG + chr4_1:51333199-51333218 Msa0554050:intron 30.0%
AATATGTCTATGTACAAGTG+GGG + chr4_1:51333201-51333220 Msa0554050:intron 30.0%
! GTGCTTTTCATTATCAATCT+TGG - chr4_1:51333422-51333441 None:intergenic 30.0%
TACATTAGAGTATGAAGTCA+AGG + chr4_1:51333552-51333571 Msa0554050:CDS 30.0%
AAATTACCTCAACAGAAACA+AGG + chr4_1:51333642-51333661 Msa0554050:CDS 30.0%
! GAAAATTTGTTCTTCAACCT+TGG - chr4_1:51333889-51333908 None:intergenic 30.0%
! ATTTTCAACCAAGTGATTCT+AGG + chr4_1:51333903-51333922 Msa0554050:three_prime_UTR 30.0%
AAGAGATCAAAGAAGATGTT+TGG + chr4_1:51332797-51332816 Msa0554050:exon 30.0%
GTTTACAATTGATGTTTACC+TGG - chr4_1:51332995-51333014 None:intergenic 30.0%
CAAATATGTCTATGTACAAG+TGG + chr4_1:51333199-51333218 Msa0554050:intron 30.0%
AATATGTCTATGTACAAGTG+GGG + chr4_1:51333201-51333220 Msa0554050:intron 30.0%
! GTGCTTTTCATTATCAATCT+TGG - chr4_1:51333422-51333441 None:intergenic 30.0%
TACATTAGAGTATGAAGTCA+AGG + chr4_1:51333552-51333571 Msa0554050:CDS 30.0%
AAATTACCTCAACAGAAACA+AGG + chr4_1:51333642-51333661 Msa0554050:CDS 30.0%
! GAAAATTTGTTCTTCAACCT+TGG - chr4_1:51333889-51333908 None:intergenic 30.0%
! ATTTTCAACCAAGTGATTCT+AGG + chr4_1:51333903-51333922 Msa0554050:three_prime_UTR 30.0%
!! TGGTGTTATGTGTCAAGTTT+AGG + chr4_1:51332678-51332697 Msa0554050:five_prime_UTR 35.0%
! TACACAAACTATTTGGGATG+TGG - chr4_1:51332776-51332795 None:intergenic 35.0%
CATTTGATATGCATGGTCAA+CGG - chr4_1:51333025-51333044 None:intergenic 35.0%
GACATCACATTTGATATGCA+TGG - chr4_1:51333032-51333051 None:intergenic 35.0%
CTTCATGAGTCTAACTCAAT+TGG - chr4_1:51333059-51333078 None:intergenic 35.0%
ATATGTCTATGTACAAGTGG+GGG + chr4_1:51333202-51333221 Msa0554050:intron 35.0%
! TGAAAAGCACATCAAAGAAG+TGG + chr4_1:51333432-51333451 Msa0554050:CDS 35.0%
! CACACTATTTAGAGTTCGTA+TGG + chr4_1:51333489-51333508 Msa0554050:CDS 35.0%
!! TGGTGTTATGTGTCAAGTTT+AGG + chr4_1:51332678-51332697 Msa0554050:five_prime_UTR 35.0%
! TACACAAACTATTTGGGATG+TGG - chr4_1:51332776-51332795 None:intergenic 35.0%
CATTTGATATGCATGGTCAA+CGG - chr4_1:51333025-51333044 None:intergenic 35.0%
GACATCACATTTGATATGCA+TGG - chr4_1:51333032-51333051 None:intergenic 35.0%
CTTCATGAGTCTAACTCAAT+TGG - chr4_1:51333059-51333078 None:intergenic 35.0%
ATATGTCTATGTACAAGTGG+GGG + chr4_1:51333202-51333221 Msa0554050:intron 35.0%
! TGAAAAGCACATCAAAGAAG+TGG + chr4_1:51333432-51333451 Msa0554050:CDS 35.0%
! CACACTATTTAGAGTTCGTA+TGG + chr4_1:51333489-51333508 Msa0554050:CDS 35.0%
! TATTTGGGATGTGGTGTATG+TGG - chr4_1:51332767-51332786 None:intergenic 40.0%
GATGCCTGAAAGATTTCAGA+AGG + chr4_1:51332913-51332932 Msa0554050:CDS 40.0%
!! TCCACCTTCTGAAATCTTTC+AGG - chr4_1:51332920-51332939 None:intergenic 40.0%
AGCTAATTGAAGGAGATGGA+GGG + chr4_1:51332939-51332958 Msa0554050:CDS 40.0%
!!! GTTTTGGTTGGAGTTTGATC+AGG + chr4_1:51333361-51333380 Msa0554050:intron 40.0%
AAAGCACATCAAAGAAGTGG+AGG + chr4_1:51333435-51333454 Msa0554050:CDS 40.0%
AAAGAAGTGGAGGTAGTTGA+AGG + chr4_1:51333445-51333464 Msa0554050:CDS 40.0%
AAGAAGTGGAGGTAGTTGAA+GGG + chr4_1:51333446-51333465 Msa0554050:CDS 40.0%
CGTATGGAAGTGATAGAGAA+AGG + chr4_1:51333505-51333524 Msa0554050:CDS 40.0%
AGAGTATGAAGTCAAGGAAG+AGG + chr4_1:51333558-51333577 Msa0554050:CDS 40.0%
ACTTGTTTCCATCCAGCAAT+TGG + chr4_1:51333597-51333616 Msa0554050:CDS 40.0%
TTGGCAGACATTGTAGAAGT+TGG + chr4_1:51333616-51333635 Msa0554050:CDS 40.0%
!! TTGCATCCTTGTTTCTGTTG+AGG - chr4_1:51333651-51333670 None:intergenic 40.0%
TCGGTTATCCTAGAATCACT+TGG - chr4_1:51333914-51333933 None:intergenic 40.0%
! TATTTGGGATGTGGTGTATG+TGG - chr4_1:51332767-51332786 None:intergenic 40.0%
GATGCCTGAAAGATTTCAGA+AGG + chr4_1:51332913-51332932 Msa0554050:CDS 40.0%
!! TCCACCTTCTGAAATCTTTC+AGG - chr4_1:51332920-51332939 None:intergenic 40.0%
AGCTAATTGAAGGAGATGGA+GGG + chr4_1:51332939-51332958 Msa0554050:CDS 40.0%
!!! GTTTTGGTTGGAGTTTGATC+AGG + chr4_1:51333361-51333380 Msa0554050:intron 40.0%
AAAGCACATCAAAGAAGTGG+AGG + chr4_1:51333435-51333454 Msa0554050:CDS 40.0%
AAAGAAGTGGAGGTAGTTGA+AGG + chr4_1:51333445-51333464 Msa0554050:CDS 40.0%
AAGAAGTGGAGGTAGTTGAA+GGG + chr4_1:51333446-51333465 Msa0554050:CDS 40.0%
CGTATGGAAGTGATAGAGAA+AGG + chr4_1:51333505-51333524 Msa0554050:CDS 40.0%
AGAGTATGAAGTCAAGGAAG+AGG + chr4_1:51333558-51333577 Msa0554050:CDS 40.0%
ACTTGTTTCCATCCAGCAAT+TGG + chr4_1:51333597-51333616 Msa0554050:CDS 40.0%
TTGGCAGACATTGTAGAAGT+TGG + chr4_1:51333616-51333635 Msa0554050:CDS 40.0%
!! TTGCATCCTTGTTTCTGTTG+AGG - chr4_1:51333651-51333670 None:intergenic 40.0%
TCGGTTATCCTAGAATCACT+TGG - chr4_1:51333914-51333933 None:intergenic 40.0%
AGTGAAGCATGGGATCTCTT+TGG + chr4_1:51332857-51332876 Msa0554050:CDS 45.0%
! CTCTTTGGCACTCTTGCTAT+TGG + chr4_1:51332872-51332891 Msa0554050:CDS 45.0%
!! TGGCACTCTTGCTATTGGAA+AGG + chr4_1:51332877-51332896 Msa0554050:CDS 45.0%
TGCTATTGGAAAGGTCGTTG+AGG + chr4_1:51332886-51332905 Msa0554050:CDS 45.0%
GCCTGAAAGATTTCAGAAGG+TGG + chr4_1:51332916-51332935 Msa0554050:CDS 45.0%
CAGAAGGTGGAGCTAATTGA+AGG + chr4_1:51332929-51332948 Msa0554050:CDS 45.0%
GTGGAGCTAATTGAAGGAGA+TGG + chr4_1:51332935-51332954 Msa0554050:CDS 45.0%
GAGCTAATTGAAGGAGATGG+AGG + chr4_1:51332938-51332957 Msa0554050:CDS 45.0%
GCTAATTGAAGGAGATGGAG+GGG + chr4_1:51332940-51332959 Msa0554050:CDS 45.0%
CTCAAACTCACATTCACTCC+AGG + chr4_1:51332974-51332993 Msa0554050:CDS 45.0%
TTGATATGCATGGTCAACGG+AGG - chr4_1:51333022-51333041 None:intergenic 45.0%
CTATGTACAAGTGGGGGATT+CGG + chr4_1:51333208-51333227 Msa0554050:intron 45.0%
GGAGTTTGATCAGGTTTACC+TGG + chr4_1:51333370-51333389 Msa0554050:intron 45.0%
! TCTTTTAAACCAGTTGGGCC+AGG - chr4_1:51333391-51333410 None:intergenic 45.0%
AGAAGTGGAGGTAGTTGAAG+GGG + chr4_1:51333447-51333466 Msa0554050:CDS 45.0%
TTGCTGGATGGAAACAAGTG+CGG - chr4_1:51333596-51333615 None:intergenic 45.0%
AATGTCTGCCAATTGCTGGA+TGG - chr4_1:51333608-51333627 None:intergenic 45.0%
CTACAATGTCTGCCAATTGC+TGG - chr4_1:51333612-51333631 None:intergenic 45.0%
!! TGTGCCAAAGTATCGAACCT+AGG + chr4_1:51333860-51333879 Msa0554050:three_prime_UTR 45.0%
GAGACCTAGGTTCGATACTT+TGG - chr4_1:51333867-51333886 None:intergenic 45.0%
TTCTTCAACCTTGGAGACCT+AGG - chr4_1:51333880-51333899 None:intergenic 45.0%
AGTGAAGCATGGGATCTCTT+TGG + chr4_1:51332857-51332876 Msa0554050:CDS 45.0%
! CTCTTTGGCACTCTTGCTAT+TGG + chr4_1:51332872-51332891 Msa0554050:CDS 45.0%
!! TGGCACTCTTGCTATTGGAA+AGG + chr4_1:51332877-51332896 Msa0554050:CDS 45.0%
TGCTATTGGAAAGGTCGTTG+AGG + chr4_1:51332886-51332905 Msa0554050:CDS 45.0%
GCCTGAAAGATTTCAGAAGG+TGG + chr4_1:51332916-51332935 Msa0554050:CDS 45.0%
CAGAAGGTGGAGCTAATTGA+AGG + chr4_1:51332929-51332948 Msa0554050:CDS 45.0%
GTGGAGCTAATTGAAGGAGA+TGG + chr4_1:51332935-51332954 Msa0554050:CDS 45.0%
GAGCTAATTGAAGGAGATGG+AGG + chr4_1:51332938-51332957 Msa0554050:CDS 45.0%
GCTAATTGAAGGAGATGGAG+GGG + chr4_1:51332940-51332959 Msa0554050:CDS 45.0%
CTCAAACTCACATTCACTCC+AGG + chr4_1:51332974-51332993 Msa0554050:CDS 45.0%
TTGATATGCATGGTCAACGG+AGG - chr4_1:51333022-51333041 None:intergenic 45.0%
CTATGTACAAGTGGGGGATT+CGG + chr4_1:51333208-51333227 Msa0554050:intron 45.0%
GGAGTTTGATCAGGTTTACC+TGG + chr4_1:51333370-51333389 Msa0554050:intron 45.0%
! TCTTTTAAACCAGTTGGGCC+AGG - chr4_1:51333391-51333410 None:intergenic 45.0%
AGAAGTGGAGGTAGTTGAAG+GGG + chr4_1:51333447-51333466 Msa0554050:CDS 45.0%
TTGCTGGATGGAAACAAGTG+CGG - chr4_1:51333596-51333615 None:intergenic 45.0%
AATGTCTGCCAATTGCTGGA+TGG - chr4_1:51333608-51333627 None:intergenic 45.0%
CTACAATGTCTGCCAATTGC+TGG - chr4_1:51333612-51333631 None:intergenic 45.0%
!! TGTGCCAAAGTATCGAACCT+AGG + chr4_1:51333860-51333879 Msa0554050:three_prime_UTR 45.0%
GAGACCTAGGTTCGATACTT+TGG - chr4_1:51333867-51333886 None:intergenic 45.0%
TTCTTCAACCTTGGAGACCT+AGG - chr4_1:51333880-51333899 None:intergenic 45.0%
AGATCCCATGCTTCACTTGC+TGG - chr4_1:51332854-51332873 None:intergenic 50.0%
ATTGAAGGAGATGGAGGGGT+TGG + chr4_1:51332944-51332963 Msa0554050:CDS 50.0%
TTGAAGGAGATGGAGGGGTT+GGG + chr4_1:51332945-51332964 Msa0554050:CDS 50.0%
GAAGTGGAGGTAGTTGAAGG+GGG + chr4_1:51333448-51333467 Msa0554050:CDS 50.0%
GAAGGGGGATGCTTAGATCT+TGG + chr4_1:51333463-51333482 Msa0554050:CDS 50.0%
GTATCGAACCTAGGTCTCCA+AGG + chr4_1:51333869-51333888 Msa0554050:three_prime_UTR 50.0%
AGATCCCATGCTTCACTTGC+TGG - chr4_1:51332854-51332873 None:intergenic 50.0%
ATTGAAGGAGATGGAGGGGT+TGG + chr4_1:51332944-51332963 Msa0554050:CDS 50.0%
TTGAAGGAGATGGAGGGGTT+GGG + chr4_1:51332945-51332964 Msa0554050:CDS 50.0%
GAAGTGGAGGTAGTTGAAGG+GGG + chr4_1:51333448-51333467 Msa0554050:CDS 50.0%
GAAGGGGGATGCTTAGATCT+TGG + chr4_1:51333463-51333482 Msa0554050:CDS 50.0%
GTATCGAACCTAGGTCTCCA+AGG + chr4_1:51333869-51333888 Msa0554050:three_prime_UTR 50.0%
GATGTGGTGTATGTGGTGCG+GGG - chr4_1:51332760-51332779 None:intergenic 55.0%
GGATGTGGTGTATGTGGTGC+GGG - chr4_1:51332761-51332780 None:intergenic 55.0%
GGGATGTGGTGTATGTGGTG+CGG - chr4_1:51332762-51332781 None:intergenic 55.0%
ACGTGCCAGCAAGTGAAGCA+TGG + chr4_1:51332846-51332865 Msa0554050:CDS 55.0%
CGTGCCAGCAAGTGAAGCAT+GGG + chr4_1:51332847-51332866 Msa0554050:CDS 55.0%
TCAGGTTTACCTGGCCCAAC+TGG + chr4_1:51333379-51333398 Msa0554050:intron 55.0%
GATGTGGTGTATGTGGTGCG+GGG - chr4_1:51332760-51332779 None:intergenic 55.0%
GGATGTGGTGTATGTGGTGC+GGG - chr4_1:51332761-51332780 None:intergenic 55.0%
GGGATGTGGTGTATGTGGTG+CGG - chr4_1:51332762-51332781 None:intergenic 55.0%
ACGTGCCAGCAAGTGAAGCA+TGG + chr4_1:51332846-51332865 Msa0554050:CDS 55.0%
CGTGCCAGCAAGTGAAGCAT+GGG + chr4_1:51332847-51332866 Msa0554050:CDS 55.0%
TCAGGTTTACCTGGCCCAAC+TGG + chr4_1:51333379-51333398 Msa0554050:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 51332663 51333978 51332663 ID=Msa0554050;Name=Msa0554050
chr4_1 mRNA 51332663 51333978 51332663 ID=Msa0554050-mRNA-1;Parent=Msa0554050;Name=Msa0554050-mRNA-1;_AED=0.24;_eAED=0.24;_QI=149|1|1|1|1|1|2|294|161
chr4_1 exon 51332663 51332995 51332663 ID=Msa0554050-mRNA-1:exon:14658;Parent=Msa0554050-mRNA-1
chr4_1 exon 51333383 51333978 51333383 ID=Msa0554050-mRNA-1:exon:14659;Parent=Msa0554050-mRNA-1
chr4_1 five_prime_UTR 51332663 51332811 51332663 ID=Msa0554050-mRNA-1:five_prime_utr;Parent=Msa0554050-mRNA-1
chr4_1 CDS 51332812 51332995 51332812 ID=Msa0554050-mRNA-1:cds;Parent=Msa0554050-mRNA-1
chr4_1 CDS 51333383 51333684 51333383 ID=Msa0554050-mRNA-1:cds;Parent=Msa0554050-mRNA-1
chr4_1 three_prime_UTR 51333685 51333978 51333685 ID=Msa0554050-mRNA-1:three_prime_utr;Parent=Msa0554050-mRNA-1
Gene Sequence

>Msa0554050

ATGTTTGGTCAACTTGAGCATGAGTTAGAGCTGCACGTGCCAGCAAGTGAAGCATGGGATCTCTTTGGCACTCTTGCTATTGGAAAGGTCGTTGAGGAACAGATGCCTGAAAGATTTCAGAAGGTGGAGCTAATTGAAGGAGATGGAGGGGTTGGGACTATTCTCAAACTCACATTCACTCCAGGTTTACCTGGCCCAACTGGTTTAAAAGAAAAGTTCACCAAGATTGATAATGAAAAGCACATCAAAGAAGTGGAGGTAGTTGAAGGGGGATGCTTAGATCTTGGATTCACACTATTTAGAGTTCGTATGGAAGTGATAGAGAAAGGTAAAGATTCAAGCATAATCAAAACTACATTAGAGTATGAAGTCAAGGAAGAGGAAGCAGCTAATGCCGCACTTGTTTCCATCCAGCAATTGGCAGACATTGTAGAAGTTGGCAAAAATTACCTCAACAGAAACAAGGATGCAAAAGAAGTAAAGTAG

Protein sequence

>Msa0554050

MFGQLEHELELHVPASEAWDLFGTLAIGKVVEEQMPERFQKVELIEGDGGVGTILKLTFTPGLPGPTGLKEKFTKIDNEKHIKEVEVVEGGCLDLGFTLFRVRMEVIEKGKDSSIIKTTLEYEVKEEEAANAALVSIQQLADIVEVGKNYLNRNKDAKEVK*