Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224330 | RHN76282.1 | 65.116 | 86 | 7 | 1 | 1 | 86 | 1 | 63 | 2.19e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224330 | A0A396JG60 | 65.116 | 86 | 7 | 1 | 1 | 86 | 1 | 63 | 1.05e-19 | 85.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa0224330 | 0.803030 | 4.233650e-49 | -8.615850e-47 |
| Msa0014710 | Msa0224330 | 0.811668 | 6.239917e-51 | -8.615850e-47 |
| Msa0017510 | Msa0224330 | 0.830694 | 2.542075e-55 | -8.615850e-47 |
| Msa0157290 | Msa0224330 | 0.830778 | 2.425121e-55 | -8.615850e-47 |
| Msa0165210 | Msa0224330 | 0.814694 | 1.352411e-51 | -8.615850e-47 |
| Msa0205510 | Msa0224330 | 0.806097 | 9.705724e-50 | -8.615850e-47 |
| Msa0212930 | Msa0224330 | 0.801235 | 9.910246e-49 | -8.615850e-47 |
| Msa0215320 | Msa0224330 | -0.802970 | 4.356707e-49 | -8.615850e-47 |
| Msa0223740 | Msa0224330 | 0.812496 | 4.117349e-51 | -8.615850e-47 |
| Msa0224320 | Msa0224330 | 0.832303 | 1.020956e-55 | -8.615850e-47 |
| Msa0224330 | Msa0226630 | 0.830451 | 2.914952e-55 | -8.615850e-47 |
| Msa0224330 | Msa0226890 | 0.828363 | 9.372174e-55 | -8.615850e-47 |
| Msa0224330 | Msa0253200 | 0.804406 | 2.193600e-49 | -8.615850e-47 |
| Msa0224330 | Msa0259370 | 0.800930 | 1.143715e-48 | -8.615850e-47 |
| Msa0224330 | Msa0278110 | 0.811410 | 7.100165e-51 | -8.615850e-47 |
| Msa0224330 | Msa0292030 | 0.806448 | 8.186938e-50 | -8.615850e-47 |
| Msa0224330 | Msa0302580 | -0.809812 | 1.572758e-50 | -8.615850e-47 |
| Msa0224330 | Msa0336320 | 0.807689 | 4.472095e-50 | -8.615850e-47 |
| Msa0224330 | Msa0410650 | 0.806542 | 7.821651e-50 | -8.615850e-47 |
| Msa0224330 | Msa0417070 | 0.807363 | 5.243052e-50 | -8.615850e-47 |
| Msa0224330 | Msa0417270 | 0.812049 | 5.155666e-51 | -8.615850e-47 |
| Msa0224330 | Msa0484780 | 0.800353 | 1.499807e-48 | -8.615850e-47 |
| Msa0224330 | Msa0507680 | 0.803131 | 4.035215e-49 | -8.615850e-47 |
| Msa0224330 | Msa0519000 | 0.816415 | 5.597365e-52 | -8.615850e-47 |
| Msa0224330 | Msa0523940 | 0.805304 | 1.423744e-49 | -8.615850e-47 |
| Msa0224330 | Msa0539530 | -0.818158 | 2.267975e-52 | -8.615850e-47 |
| Msa0224330 | Msa0547320 | 0.801796 | 7.601876e-49 | -8.615850e-47 |
| Msa0224330 | Msa0601750 | 0.801470 | 8.868990e-49 | -8.615850e-47 |
| Msa0224330 | Msa0610430 | 0.810971 | 8.840770e-51 | -8.615850e-47 |
| Msa0224330 | Msa0657970 | 0.805903 | 1.065975e-49 | -8.615850e-47 |
| Msa0224330 | Msa0731940 | 0.818850 | 1.580569e-52 | -8.615850e-47 |
| Msa0224330 | Msa0743720 | 0.800551 | 1.367068e-48 | -8.615850e-47 |
| Msa0224330 | Msa0749290 | 0.805283 | 1.438800e-49 | -8.615850e-47 |
| Msa0224330 | Msa0762210 | 0.800222 | 1.594559e-48 | -8.615850e-47 |
| Msa0224330 | Msa0762970 | 0.803518 | 3.355643e-49 | -8.615850e-47 |
| Msa0224330 | Msa0820850 | 0.807224 | 5.611004e-50 | -8.615850e-47 |
| Msa0224330 | Msa0832340 | 0.803675 | 3.112279e-49 | -8.615850e-47 |
| Msa0224330 | Msa0844490 | 0.804863 | 1.761373e-49 | -8.615850e-47 |
| Msa0224330 | Msa0849030 | 0.813245 | 2.822735e-51 | -8.615850e-47 |
| Msa0224330 | Msa0849100 | 0.806183 | 9.309538e-50 | -8.615850e-47 |
| Msa0224330 | Msa0857640 | 0.823660 | 1.228873e-53 | -8.615850e-47 |
| Msa0224330 | Msa0861130 | 0.803906 | 2.787893e-49 | -8.615850e-47 |
| Msa0224330 | Msa0880140 | 0.826667 | 2.391933e-54 | -8.615850e-47 |
| Msa0224330 | Msa0897330 | 0.820620 | 6.229735e-53 | -8.615850e-47 |
| Msa0224330 | Msa0927380 | 0.802990 | 4.316216e-49 | -8.615850e-47 |
| Msa0224330 | Msa0933100 | 0.814594 | 1.422566e-51 | -8.615850e-47 |
| Msa0224330 | Msa0936300 | 0.807782 | 4.272883e-50 | -8.615850e-47 |
| Msa0224330 | Msa0949590 | 0.800719 | 1.263002e-48 | -8.615850e-47 |
| Msa0224330 | Msa0969520 | 0.827154 | 1.829889e-54 | -8.615850e-47 |
| Msa0224330 | Msa0973100 | 0.806371 | 8.496895e-50 | -8.615850e-47 |
| Msa0224330 | Msa0974070 | 0.805650 | 1.205022e-49 | -8.615850e-47 |
| Msa0224330 | Msa0993290 | 0.807559 | 4.764676e-50 | -8.615850e-47 |
| Msa0224330 | Msa0993600 | 0.810726 | 9.988326e-51 | -8.615850e-47 |
| Msa0224330 | Msa1075220 | -0.801407 | 9.134803e-49 | -8.615850e-47 |
| Msa0224330 | Msa1075540 | 0.840329 | 9.284898e-58 | -8.615850e-47 |
| Msa0224330 | Msa1082500 | 0.804789 | 1.824593e-49 | -8.615850e-47 |
| Msa0224330 | Msa1085200 | 0.814347 | 1.613899e-51 | -8.615850e-47 |
| Msa0224330 | Msa1113170 | 0.816098 | 6.587809e-52 | -8.615850e-47 |
| Msa0224330 | Msa1121490 | 0.805921 | 1.057125e-49 | -8.615850e-47 |
| Msa0224330 | Msa1137570 | 0.823968 | 1.040745e-53 | -8.615850e-47 |
| Msa0224330 | Msa1154280 | 0.802204 | 6.268016e-49 | -8.615850e-47 |
| Msa0224330 | Msa1162550 | -0.803081 | 4.133644e-49 | -8.615850e-47 |
| Msa0224330 | Msa1193290 | 0.800316 | 1.526164e-48 | -8.615850e-47 |
| Msa0224330 | Msa1233890 | 0.800558 | 1.362278e-48 | -8.615850e-47 |
| Msa0224330 | Msa1253020 | 0.813591 | 2.369332e-51 | -8.615850e-47 |
| Msa0224330 | Msa1284680 | 0.809962 | 1.460043e-50 | -8.615850e-47 |
| Msa0224330 | Msa1286800 | 0.821457 | 3.996174e-53 | -8.615850e-47 |
| Msa0224330 | Msa1305340 | 0.803996 | 2.669501e-49 | -8.615850e-47 |
| Msa0224330 | Msa1306850 | 0.811454 | 6.943815e-51 | -8.615850e-47 |
| Msa0224330 | Msa1306860 | 0.815932 | 7.174602e-52 | -8.615850e-47 |
| Msa0224330 | Msa1353470 | 0.806444 | 8.201959e-50 | -8.615850e-47 |
| Msa0224330 | Msa1359040 | 0.817276 | 3.586978e-52 | -8.615850e-47 |
| Msa0224330 | Msa1366970 | 0.815353 | 9.656329e-52 | -8.615850e-47 |
| Msa0224330 | Msa1459270 | 0.800629 | 1.317424e-48 | -8.615850e-47 |
| Msa0224330 | Msa1466540 | 0.803995 | 2.671430e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0224330 | MtrunA17_Chr2g0330351 | 65.116 | 86 | 7 | 1 | 1 | 86 | 1 | 63 | 2.01e-23 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 151 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGATTCTGATTGTGATTC+TGG | 0.094493 | 2_1:+74193345 | None:intergenic |
| AGTATTGAACTTTGGGAATT+TGG | 0.122868 | 2_1:-74193190 | Msa0224330:five_prime_UTR |
| AATCCAGTTGTTTGGGAATT+TGG | 0.143627 | 2_1:-74192941 | Msa0224330:five_prime_UTR |
| TGCTTTCTTTCTTGAGAGTT+TGG | 0.241468 | 2_1:-74192677 | Msa0224330:five_prime_UTR |
| TTGTTAGGACTTAGAATAAA+AGG | 0.266188 | 2_1:-74190024 | Msa0224330:three_prime_UTR |
| TTTCAGTTGTTAGACCTCTT+AGG | 0.268253 | 2_1:-74189936 | Msa0224330:three_prime_UTR |
| GTATTGAACTTTGGGAATTT+GGG | 0.281740 | 2_1:-74193189 | Msa0224330:five_prime_UTR |
| CTACAAGAAGACAAGAAAAT+TGG | 0.287221 | 2_1:-74192317 | Msa0224330:five_prime_UTR |
| CTTATGCGTCTTTCTAAGTT+TGG | 0.288933 | 2_1:-74192259 | Msa0224330:five_prime_UTR |
| ACCTAACAGAGAGGGCTTAC+AGG | 0.302124 | 2_1:-74192027 | Msa0224330:five_prime_UTR |
| CTAGAATATGTATGAATGTT+AGG | 0.304013 | 2_1:+74192496 | None:intergenic |
| GTGTCAGCCTTCAGCTTTGA+AGG | 0.335312 | 2_1:+74190187 | None:intergenic |
| GTATAGCTGTAGAGTTTGTT+AGG | 0.337513 | 2_1:-74189972 | Msa0224330:three_prime_UTR |
| ATTAGTAAAGTATTGAACTT+TGG | 0.341496 | 2_1:-74193198 | Msa0224330:five_prime_UTR |
| ATCAAGAACAGACCCATTCT+TGG | 0.342707 | 2_1:-74190305 | Msa0224330:CDS |
| GCTTTCTTTCTTGAGAGTTT+GGG | 0.345133 | 2_1:-74192676 | Msa0224330:five_prime_UTR |
| TCGAAAGCAATCCAGTTGTT+TGG | 0.347996 | 2_1:-74192949 | Msa0224330:five_prime_UTR |
| AAGTGCATCGGCCACTTTCC+TGG | 0.348306 | 2_1:+74192450 | None:intergenic |
| TGTTGGTGGTTGGTCTAAGT+TGG | 0.348737 | 2_1:-74192773 | Msa0224330:five_prime_UTR |
| TTCAGTTGTTAGACCTCTTA+GGG | 0.354141 | 2_1:-74189935 | Msa0224330:three_prime_UTR |
| TTAGTAAAGTATTGAACTTT+GGG | 0.368870 | 2_1:-74193197 | Msa0224330:five_prime_UTR |
| CAAGGAGTTGTGCCTCCTAC+TGG | 0.379823 | 2_1:-74192403 | Msa0224330:five_prime_UTR |
| TGGATTCTGATTGTGATTCT+GGG | 0.382240 | 2_1:+74193346 | None:intergenic |
| GGGTGTATGAAGTATTATAA+TGG | 0.383102 | 2_1:-74192541 | Msa0224330:five_prime_UTR |
| CGAAAGCAATCCAGTTGTTT+GGG | 0.385039 | 2_1:-74192948 | Msa0224330:five_prime_UTR |
| TTAGAATAAAAGGAGTTTGT+TGG | 0.386247 | 2_1:-74190014 | Msa0224330:three_prime_UTR |
| CACGGATCCAATAGGGTTGC+TGG | 0.387111 | 2_1:-74190248 | Msa0224330:exon |
| GCCTGTAAGCCCTCTCTGTT+AGG | 0.390509 | 2_1:+74192026 | None:intergenic |
| ATTGAAACCGTAACAGATCT+TGG | 0.395436 | 2_1:-74190384 | Msa0224330:CDS |
| GTGGTTGGTCTAAGTTGGGT+AGG | 0.398659 | 2_1:-74192768 | Msa0224330:five_prime_UTR |
| TCATGTCGGTGCTGCAGCTT+CGG | 0.401001 | 2_1:-74192851 | Msa0224330:five_prime_UTR |
| TTTGGGAATTTGGATGATCT+CGG | 0.403976 | 2_1:-74192931 | Msa0224330:five_prime_UTR |
| TTTGGGTAGAGCAGGTAGAA+TGG | 0.405368 | 2_1:-74192659 | Msa0224330:five_prime_UTR |
| GTGAAGGGAGAGTGCTCCCT+TGG | 0.412376 | 2_1:-74189859 | Msa0224330:three_prime_UTR |
| TACTTACCATGTCATTGTTA+AGG | 0.412701 | 2_1:-74193100 | Msa0224330:five_prime_UTR |
| ATACCGCGTAGTTTATCTTC+AGG | 0.412842 | 2_1:+74193300 | None:intergenic |
| TGAGAGGGTTATGAAGGAAA+TGG | 0.413528 | 2_1:-74192734 | Msa0224330:five_prime_UTR |
| TTCAAAGGCACGGATCCAAT+AGG | 0.415562 | 2_1:-74190256 | Msa0224330:exon |
| CATCCAAATTCCCAAACAAC+TGG | 0.417039 | 2_1:+74192938 | None:intergenic |
| TCAGAATCCAAATCCGTTGA+TGG | 0.418697 | 2_1:-74193333 | Msa0224330:five_prime_UTR |
| TGGAGGAGGCTTTGCGCAAA+GGG | 0.420469 | 2_1:-74192105 | Msa0224330:five_prime_UTR |
| ATCTTTCTTCAGAAGCTAAA+GGG | 0.421122 | 2_1:-74193279 | Msa0224330:five_prime_UTR |
| GCTACTTCCTCGCAACATTA+CGG | 0.425177 | 2_1:-74191859 | Msa0224330:CDS |
| CATGTCAGAAATCTTGCTTA+TGG | 0.429523 | 2_1:+74190431 | None:intergenic |
| CCATGTCATTGTTAAGGCAC+TGG | 0.433177 | 2_1:-74193094 | Msa0224330:five_prime_UTR |
| AAAGCAAACGTACTGAAATC+AGG | 0.434665 | 2_1:+74192694 | None:intergenic |
| GTTGGTGGTTGGTCTAAGTT+GGG | 0.435610 | 2_1:-74192772 | Msa0224330:five_prime_UTR |
| TTGCATGATATCCATCTTGT+TGG | 0.437144 | 2_1:+74190458 | None:intergenic |
| CTTGAGAGTTTGGGTAGAGC+AGG | 0.437631 | 2_1:-74192667 | Msa0224330:five_prime_UTR |
| TCAAAGGCACGGATCCAATA+GGG | 0.443184 | 2_1:-74190255 | Msa0224330:exon |
| TATCTTTCTTCAGAAGCTAA+AGG | 0.449189 | 2_1:-74193280 | Msa0224330:five_prime_UTR |
| CAAGTTGTCCTATGTTGTAA+AGG | 0.452210 | 2_1:+74192146 | None:intergenic |
| TGAAGGGAGAGTGCTCCCTT+GGG | 0.459913 | 2_1:-74189858 | Msa0224330:three_prime_UTR |
| GCTGCATAATTGTTTGATGA+AGG | 0.463233 | 2_1:+74192369 | None:intergenic |
| CTTTCTAAGTTTGGTAAATG+TGG | 0.463945 | 2_1:-74192250 | Msa0224330:five_prime_UTR |
| GTGAGAGCCAGCAACCCTAT+TGG | 0.471151 | 2_1:+74190241 | None:intergenic |
| AGAAGTTATTGGCGCGATAA+CGG | 0.471453 | 2_1:-74191962 | Msa0224330:five_prime_UTR |
| TTGTTGGAATTAGAGTTAAG+AGG | 0.474337 | 2_1:-74189998 | Msa0224330:three_prime_UTR |
| GGTGTATGAAGTATTATAAT+GGG | 0.480051 | 2_1:-74192540 | Msa0224330:five_prime_UTR |
| TGCTGATCCAAGATCTGTTA+CGG | 0.482501 | 2_1:+74190377 | None:intergenic |
| CCAGATATGTGAAAATCAAA+TGG | 0.484805 | 2_1:+74191888 | None:intergenic |
| TTAAACAACCAATGGTGCCC+GGG | 0.485251 | 2_1:-74193131 | Msa0224330:five_prime_UTR |
| ATTAAACAACCAATGGTGCC+CGG | 0.485356 | 2_1:-74193132 | Msa0224330:five_prime_UTR |
| CCAATGGTGCCCGGGGATGT+TGG | 0.487513 | 2_1:-74193123 | Msa0224330:five_prime_UTR |
| TTGTTAAGGCACTGGGAAGA+AGG | 0.488352 | 2_1:-74193086 | Msa0224330:five_prime_UTR |
| GACACATATAATGTTGTTGT+TGG | 0.491842 | 2_1:-74192790 | Msa0224330:five_prime_UTR |
| CCAACATCCCCGGGCACCAT+TGG | 0.493269 | 2_1:+74193123 | None:intergenic |
| TCTTCAGAAGCTAAAGGGTA+AGG | 0.494215 | 2_1:-74193274 | Msa0224330:five_prime_UTR |
| TTTACTGTATACAAGCCTGC+TGG | 0.496883 | 2_1:+74192075 | None:intergenic |
| TGAGATTGAGAGGGTTATGA+AGG | 0.497769 | 2_1:-74192740 | Msa0224330:five_prime_UTR |
| GAATTTGGGTGGTGAAGCTA+TGG | 0.498108 | 2_1:-74193175 | Msa0224330:five_prime_UTR |
| GGATCCGTGCCTTTGAAAGT+AGG | 0.498305 | 2_1:+74190262 | None:intergenic |
| ATCAAACAATTATGCAGCTA+TGG | 0.499061 | 2_1:-74192364 | Msa0224330:five_prime_UTR |
| TACCGCGTAGTTTATCTTCA+GGG | 0.501128 | 2_1:+74193301 | None:intergenic |
| TGATGTTTGATGAGATGTTA+AGG | 0.501851 | 2_1:-74192426 | Msa0224330:five_prime_UTR |
| TTAGATGAGATGAGATTGAA+TGG | 0.502582 | 2_1:-74193036 | Msa0224330:five_prime_UTR |
| TGCTGTTCTTGTCATGGAGG+AGG | 0.503656 | 2_1:-74192119 | Msa0224330:five_prime_UTR |
| ATTGGAGTGTAAGATATCAA+TGG | 0.505389 | 2_1:-74192299 | Msa0224330:five_prime_UTR |
| CATGTCATTGTTAAGGCACT+GGG | 0.505693 | 2_1:-74193093 | Msa0224330:five_prime_UTR |
| AACATTGTTAAGTGTATGGC+AGG | 0.509537 | 2_1:-74192227 | Msa0224330:five_prime_UTR |
| TGGTTGGTCTAAGTTGGGTA+GGG | 0.510976 | 2_1:-74192767 | Msa0224330:five_prime_UTR |
| GTTATTGGCGCGATAACGGT+TGG | 0.512953 | 2_1:-74191958 | Msa0224330:five_prime_UTR |
| TGAAAATGCTGTTCTTGTCA+TGG | 0.518590 | 2_1:-74192125 | Msa0224330:five_prime_UTR |
| GTGGAACATTGTTAAGTGTA+TGG | 0.518991 | 2_1:-74192231 | Msa0224330:five_prime_UTR |
| GTTGTTAGACCTCTTAGGGG+AGG | 0.520411 | 2_1:-74189931 | Msa0224330:three_prime_UTR |
| CAGAATCCAAATCCGTTGAT+GGG | 0.520509 | 2_1:-74193332 | Msa0224330:five_prime_UTR |
| ACATATAATGTTGTTGTTGG+TGG | 0.521286 | 2_1:-74192787 | Msa0224330:five_prime_UTR |
| TAGATCATCATAGCTGCATA+TGG | 0.521595 | 2_1:+74192337 | None:intergenic |
| TCAAAACAATCTTGTCCTCA+AGG | 0.523083 | 2_1:+74190058 | None:intergenic |
| GATTGCTTTCGACACATGAC+CGG | 0.524488 | 2_1:+74192960 | None:intergenic |
| TTGGGAATTTGGATGATCTC+GGG | 0.529597 | 2_1:-74192930 | Msa0224330:five_prime_UTR |
| ATGATTGCCCCTCCCCTAAG+AGG | 0.533853 | 2_1:+74189922 | None:intergenic |
| TGTTAGACCTCTTAGGGGAG+GGG | 0.536748 | 2_1:-74189929 | Msa0224330:three_prime_UTR |
| TTGTTAGACCTCTTAGGGGA+GGG | 0.537574 | 2_1:-74189930 | Msa0224330:three_prime_UTR |
| TAGAATGGATGAGGCTGTTG+AGG | 0.538411 | 2_1:-74192644 | Msa0224330:five_prime_UTR |
| GCAAAGGGTTCTGTCCCAGC+AGG | 0.539699 | 2_1:-74192090 | Msa0224330:five_prime_UTR |
| TACACCTACTTTCAAAGGCA+CGG | 0.544001 | 2_1:-74190266 | Msa0224330:CDS |
| ATGACAGGATTCCAACAAGA+TGG | 0.546276 | 2_1:-74190469 | Msa0224330:intron |
| ATGGAGGAGGCTTTGCGCAA+AGG | 0.548012 | 2_1:-74192106 | Msa0224330:five_prime_UTR |
| ATAATGTTGTTGTTGGTGGT+TGG | 0.548071 | 2_1:-74192783 | Msa0224330:five_prime_UTR |
| TTACTGTATACAAGCCTGCT+GGG | 0.548303 | 2_1:+74192076 | None:intergenic |
| AAGGAGTTGTGCCTCCTACT+GGG | 0.549624 | 2_1:-74192402 | Msa0224330:five_prime_UTR |
| TTGGGCAATTAAACAACCAA+TGG | 0.553530 | 2_1:-74193139 | Msa0224330:five_prime_UTR |
| ATGGTAAGTACCAACATCCC+CGG | 0.560669 | 2_1:+74193113 | None:intergenic |
| CTTGGGGTAACTTGAATGCA+AGG | 0.565587 | 2_1:-74189841 | Msa0224330:three_prime_UTR |
| TTCAAAGCTGAAGGCTGACA+CGG | 0.568246 | 2_1:-74190185 | Msa0224330:three_prime_UTR |
| ATGCTCTAGTGATCTAGTGA+AGG | 0.574759 | 2_1:-74189875 | Msa0224330:three_prime_UTR |
| GCATAATTGTTTGATGAAGG+AGG | 0.574930 | 2_1:+74192372 | None:intergenic |
| TAGAGCAGGTAGAATGGATG+AGG | 0.578557 | 2_1:-74192653 | Msa0224330:five_prime_UTR |
| ATCAAACATCAAAAGTGCAT+CGG | 0.579682 | 2_1:+74192438 | None:intergenic |
| TGCTTCAAACCTAACAGAGA+GGG | 0.579793 | 2_1:-74192035 | Msa0224330:five_prime_UTR |
| AGTCGAACCTTCAAAGCTGA+AGG | 0.580363 | 2_1:-74190194 | Msa0224330:three_prime_UTR |
| ATGAAGGAAATGGAAGCTGA+GGG | 0.583645 | 2_1:-74192724 | Msa0224330:five_prime_UTR |
| GGATTCTGATTGTGATTCTG+GGG | 0.590941 | 2_1:+74193347 | None:intergenic |
| GAATTAGAGCAAGCTGAAGA+CGG | 0.595241 | 2_1:-74190145 | Msa0224330:three_prime_UTR |
| TTTAGTAGATTGCAACCTTG+AGG | 0.598397 | 2_1:-74190073 | Msa0224330:three_prime_UTR |
| GTAGGGTGAATGAGATTGAG+AGG | 0.598961 | 2_1:-74192750 | Msa0224330:five_prime_UTR |
| ATAAGCGGCCTTTACAACAT+AGG | 0.599688 | 2_1:-74192154 | Msa0224330:five_prime_UTR |
| CAAAAGCACATTCAAAGCCT+CGG | 0.601629 | 2_1:+74192894 | None:intergenic |
| GGCAGGAGATGCAAGAATGT+GGG | 0.604659 | 2_1:-74192210 | Msa0224330:five_prime_UTR |
| TGCTCTAGTGATCTAGTGAA+GGG | 0.606264 | 2_1:-74189874 | Msa0224330:three_prime_UTR |
| TATGAAGGAAATGGAAGCTG+AGG | 0.607416 | 2_1:-74192725 | Msa0224330:five_prime_UTR |
| GAGGTTATAGTCCCAGTAGG+AGG | 0.607543 | 2_1:+74192391 | None:intergenic |
| ATCATCATAGCTGCATATGG+TGG | 0.614246 | 2_1:+74192340 | None:intergenic |
| TTTGATGAGATGTTAAGGCA+AGG | 0.615366 | 2_1:-74192421 | Msa0224330:five_prime_UTR |
| ACCGCGTAGTTTATCTTCAG+GGG | 0.615513 | 2_1:+74193302 | None:intergenic |
| TGGTAAGTACCAACATCCCC+GGG | 0.619660 | 2_1:+74193114 | None:intergenic |
| CTTGCATTCAAGTTACCCCA+AGG | 0.620413 | 2_1:+74189842 | None:intergenic |
| GAACGACACACTTACAAACT+CGG | 0.620791 | 2_1:-74190346 | Msa0224330:CDS |
| CTTTGTCGACGCTGTCATGT+CGG | 0.623109 | 2_1:-74192865 | Msa0224330:five_prime_UTR |
| GACGGAAAAGAAGAAATCAC+AGG | 0.627193 | 2_1:-74190127 | Msa0224330:three_prime_UTR |
| AAGGAGGTTATAGTCCCAGT+AGG | 0.631328 | 2_1:+74192388 | None:intergenic |
| TAAACAACCAATGGTGCCCG+GGG | 0.632646 | 2_1:-74193130 | Msa0224330:five_prime_UTR |
| CCAGTGCCTTAACAATGACA+TGG | 0.634826 | 2_1:+74193094 | None:intergenic |
| TAGGGTGAATGAGATTGAGA+GGG | 0.636775 | 2_1:-74192749 | Msa0224330:five_prime_UTR |
| TGGCAGGAGATGCAAGAATG+TGG | 0.637681 | 2_1:-74192211 | Msa0224330:five_prime_UTR |
| CGACATGACAGCGTCGACAA+AGG | 0.638488 | 2_1:+74192866 | None:intergenic |
| GGAAAAGAAGAAATCACAGG+TGG | 0.644080 | 2_1:-74190124 | Msa0224330:three_prime_UTR |
| TTGAACTTTGGGAATTTGGG+TGG | 0.644522 | 2_1:-74193186 | Msa0224330:five_prime_UTR |
| AAAGCTGAAGGCTGACACGG+AGG | 0.656781 | 2_1:-74190182 | Msa0224330:three_prime_UTR |
| TCAGTTGTTAGACCTCTTAG+GGG | 0.658328 | 2_1:-74189934 | Msa0224330:three_prime_UTR |
| TGAAGGAAATGGAAGCTGAG+GGG | 0.662066 | 2_1:-74192723 | Msa0224330:five_prime_UTR |
| GAAGGGAGAGTGCTCCCTTG+GGG | 0.664460 | 2_1:-74189857 | Msa0224330:three_prime_UTR |
| TTGCATTCAAGTTACCCCAA+GGG | 0.672485 | 2_1:+74189843 | None:intergenic |
| GAAAAGAAGAAATCACAGGT+GGG | 0.672572 | 2_1:-74190123 | Msa0224330:three_prime_UTR |
| GTTTACGAGTACATCATAAG+CGG | 0.676019 | 2_1:-74192169 | Msa0224330:five_prime_UTR |
| ACTAGATCCGTAATGTTGCG+AGG | 0.681910 | 2_1:+74191852 | None:intergenic |
| CGGGTTGAATCGTGATACCG+AGG | 0.683247 | 2_1:-74192911 | Msa0224330:five_prime_UTR |
| TTGCTTCAAACCTAACAGAG+AGG | 0.703672 | 2_1:-74192036 | Msa0224330:five_prime_UTR |
| AAATGCTGTTCTTGTCATGG+AGG | 0.741667 | 2_1:-74192122 | Msa0224330:five_prime_UTR |
| TCCCCTGAAGATAAACTACG+CGG | 0.789552 | 2_1:-74193303 | Msa0224330:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGGTTATGTTTTTTAATT+GGG | - | chr2_1:74190007-74190026 | Msa0224330:three_prime_UTR | 15.0% |
| !!! | ATTTTTAATTTCATTTCGAT+TGG | - | chr2_1:74190590-74190609 | Msa0224330:intron | 15.0% |
| !! | TAATTAAATAGTCAATAAAC+TGG | + | chr2_1:74192321-74192340 | None:intergenic | 15.0% |
| !! | AAAATTAATTTAAATGAGCA+AGG | + | chr2_1:74192524-74192543 | None:intergenic | 15.0% |
| !!! | ATTAGTAAAGTATTGAACTT+TGG | - | chr2_1:74189966-74189985 | Msa0224330:three_prime_UTR | 20.0% |
| !!! | TTAGTAAAGTATTGAACTTT+GGG | - | chr2_1:74189967-74189986 | Msa0224330:three_prime_UTR | 20.0% |
| !!! | CTATGGTTATGTTTTTTAAT+TGG | - | chr2_1:74190006-74190025 | Msa0224330:three_prime_UTR | 20.0% |
| !!! | ATTTTTCATTTTTATGATGC+AGG | - | chr2_1:74190103-74190122 | Msa0224330:three_prime_UTR | 20.0% |
| !! | TAGTTAAAAAATTCAGTGTA+AGG | + | chr2_1:74191342-74191361 | None:intergenic | 20.0% |
| !!! | TTTTTAATATAGCTGTCTTT+TGG | - | chr2_1:74191430-74191449 | Msa0224330:intron | 20.0% |
| !!! | TTTTAATATAGCTGTCTTTT+GGG | - | chr2_1:74191431-74191450 | Msa0224330:intron | 20.0% |
| !! | GCATTAAAGAATATTTACAA+AGG | + | chr2_1:74191674-74191693 | None:intergenic | 20.0% |
| !! | AGCTTGTAGAAATTTATATT+TGG | - | chr2_1:74191711-74191730 | Msa0224330:intron | 20.0% |
| !!! | ATTTATATTTGGTTTTTCTG+TGG | - | chr2_1:74191722-74191741 | Msa0224330:intron | 20.0% |
| !! | ATCATCACTATTAAATAACT+TGG | - | chr2_1:74191919-74191938 | Msa0224330:five_prime_UTR | 20.0% |
| !! | TTGCAGATAATAGATATTTA+TGG | + | chr2_1:74192216-74192235 | None:intergenic | 20.0% |
| !!! | TTCTACTGACTATAATTAAT+TGG | - | chr2_1:74192390-74192409 | Msa0224330:five_prime_UTR | 20.0% |
| !!! | ATAATTCATTTGAAACAGAA+TGG | - | chr2_1:74192651-74192670 | Msa0224330:five_prime_UTR | 20.0% |
| !!! | ATTGATAGTTTTGTAAATGC+CGG | - | chr2_1:74190185-74190204 | Msa0224330:three_prime_UTR | 25.0% |
| !!! | TTTTAATTCAATGAAAGGGA+AGG | - | chr2_1:74190337-74190356 | Msa0224330:CDS | 25.0% |
| !! | GGTGTATGAAGTATTATAAT+GGG | - | chr2_1:74190624-74190643 | Msa0224330:intron | 25.0% |
| ! | CTAGAATATGTATGAATGTT+AGG | + | chr2_1:74190671-74190690 | None:intergenic | 25.0% |
| ! | AAGGAACGGTAAATAATTTA+AGG | + | chr2_1:74191374-74191393 | None:intergenic | 25.0% |
| ! | CAAAATCACAAATCTAGAAA+AGG | + | chr2_1:74191393-74191412 | None:intergenic | 25.0% |
| ! | TAAATGTTATAGTGTAGTCT+TGG | - | chr2_1:74191458-74191477 | Msa0224330:intron | 25.0% |
| !! | ACGTATTTCTATTTGCAATA+TGG | - | chr2_1:74191525-74191544 | Msa0224330:intron | 25.0% |
| !! | CGTATTTCTATTTGCAATAT+GGG | - | chr2_1:74191526-74191545 | Msa0224330:intron | 25.0% |
| !! | GAACTTAACTTTTGTTGAAT+AGG | - | chr2_1:74191810-74191829 | Msa0224330:intron | 25.0% |
| !! | TTAACTTTTGTTGAATAGGT+AGG | - | chr2_1:74191814-74191833 | Msa0224330:intron | 25.0% |
| !!! | ACTATTAAATAACTTGGTGT+TGG | - | chr2_1:74191925-74191944 | Msa0224330:five_prime_UTR | 25.0% |
| ! | TGTTTCAACTTTCAATAAAC+AGG | + | chr2_1:74192067-74192086 | None:intergenic | 25.0% |
| ! | TATTGAAAGTTGAAACACAT+AGG | - | chr2_1:74192070-74192089 | Msa0224330:five_prime_UTR | 25.0% |
| ! | ATCTATTATCTGCAAATACA+TGG | - | chr2_1:74192221-74192240 | Msa0224330:five_prime_UTR | 25.0% |
| ! | ATAGTCAATAAACTGGAAAA+GGG | + | chr2_1:74192314-74192333 | None:intergenic | 25.0% |
| ! | AATAGTCAATAAACTGGAAA+AGG | + | chr2_1:74192315-74192334 | None:intergenic | 25.0% |
| ! | TAGAACTATGTATGACATAT+TGG | + | chr2_1:74192375-74192394 | None:intergenic | 25.0% |
| !!! | GAGTTTGTTTAATTTTTTGC+TGG | - | chr2_1:74192480-74192499 | Msa0224330:five_prime_UTR | 25.0% |
| ! | TTGTTAGGACTTAGAATAAA+AGG | - | chr2_1:74193140-74193159 | Msa0224330:five_prime_UTR | 25.0% |
| ! | TTAGAATAAAAGGAGTTTGT+TGG | - | chr2_1:74193150-74193169 | Msa0224330:five_prime_UTR | 25.0% |
| TATCTTTCTTCAGAAGCTAA+AGG | - | chr2_1:74189884-74189903 | Msa0224330:three_prime_UTR | 30.0% | |
| ATCTTTCTTCAGAAGCTAAA+GGG | - | chr2_1:74189885-74189904 | Msa0224330:three_prime_UTR | 30.0% | |
| ! | AGTATTGAACTTTGGGAATT+TGG | - | chr2_1:74189974-74189993 | Msa0224330:three_prime_UTR | 30.0% |
| ! | GTATTGAACTTTGGGAATTT+GGG | - | chr2_1:74189975-74189994 | Msa0224330:three_prime_UTR | 30.0% |
| TACTTACCATGTCATTGTTA+AGG | - | chr2_1:74190064-74190083 | Msa0224330:three_prime_UTR | 30.0% | |
| TTAGATGAGATGAGATTGAA+TGG | - | chr2_1:74190128-74190147 | Msa0224330:three_prime_UTR | 30.0% | |
| !! | TCGGCTTTTAATTCAATGAA+AGG | - | chr2_1:74190332-74190351 | Msa0224330:CDS | 30.0% |
| !! | CGGCTTTTAATTCAATGAAA+GGG | - | chr2_1:74190333-74190352 | Msa0224330:CDS | 30.0% |
| GACACATATAATGTTGTTGT+TGG | - | chr2_1:74190374-74190393 | Msa0224330:CDS | 30.0% | |
| ! | ACATATAATGTTGTTGTTGG+TGG | - | chr2_1:74190377-74190396 | Msa0224330:CDS | 30.0% |
| ! | ATTTCGATTGGAGATTTTGA+TGG | - | chr2_1:74190602-74190621 | Msa0224330:intron | 30.0% |
| !! | TTTCGATTGGAGATTTTGAT+GGG | - | chr2_1:74190603-74190622 | Msa0224330:intron | 30.0% |
| ! | GGGTGTATGAAGTATTATAA+TGG | - | chr2_1:74190623-74190642 | Msa0224330:intron | 30.0% |
| ! | ATCAAACATCAAAAGTGCAT+CGG | + | chr2_1:74190729-74190748 | None:intergenic | 30.0% |
| TGATGTTTGATGAGATGTTA+AGG | - | chr2_1:74190738-74190757 | Msa0224330:intron | 30.0% | |
| ATCAAACAATTATGCAGCTA+TGG | - | chr2_1:74190800-74190819 | Msa0224330:intron | 30.0% | |
| CTACAAGAAGACAAGAAAAT+TGG | - | chr2_1:74190847-74190866 | Msa0224330:intron | 30.0% | |
| ATTGGAGTGTAAGATATCAA+TGG | - | chr2_1:74190865-74190884 | Msa0224330:intron | 30.0% | |
| CTTTCTAAGTTTGGTAAATG+TGG | - | chr2_1:74190914-74190933 | Msa0224330:intron | 30.0% | |
| TAAAAAACGCGAGAAGTTAT+TGG | - | chr2_1:74191191-74191210 | Msa0224330:intron | 30.0% | |
| CCAGATATGTGAAAATCAAA+TGG | + | chr2_1:74191279-74191298 | None:intergenic | 30.0% | |
| !! | CCATTTGATTTTCACATATC+TGG | - | chr2_1:74191276-74191295 | Msa0224330:intron | 30.0% |
| !! | ATTTTCACATATCTGGTCTT+TGG | - | chr2_1:74191283-74191302 | Msa0224330:intron | 30.0% |
| TCACAAATCTAGAAAAGGAA+CGG | + | chr2_1:74191388-74191407 | None:intergenic | 30.0% | |
| TAATTGTATCCATACGAAAC+TGG | - | chr2_1:74191500-74191519 | Msa0224330:intron | 30.0% | |
| GCAACATAAACTTATTACAG+AGG | - | chr2_1:74191581-74191600 | Msa0224330:intron | 30.0% | |
| ! | CTTCATTAACCAAAGTACTT+TGG | - | chr2_1:74191630-74191649 | Msa0224330:intron | 30.0% |
| ! | GAAAAATAGCCAAAGTACTT+TGG | + | chr2_1:74191642-74191661 | None:intergenic | 30.0% |
| ! | ATATTTACAAAGGCATGACT+TGG | + | chr2_1:74191664-74191683 | None:intergenic | 30.0% |
| AAGCTTCTTGTAACTAAGAA+AGG | + | chr2_1:74191696-74191715 | None:intergenic | 30.0% | |
| !!! | TTTGGTTTTTCTGTGGATTT+AGG | - | chr2_1:74191729-74191748 | Msa0224330:intron | 30.0% |
| TTCTGCTATCTTCTTTGTAA+AGG | - | chr2_1:74191894-74191913 | Msa0224330:CDS | 30.0% | |
| GGTCCATTATGTTAATGTAA+AGG | - | chr2_1:74191969-74191988 | Msa0224330:five_prime_UTR | 30.0% | |
| GCACCTTTACATTAACATAA+TGG | + | chr2_1:74191975-74191994 | None:intergenic | 30.0% | |
| TCCTATAATCCTATAACAGA+CGG | + | chr2_1:74192114-74192133 | None:intergenic | 30.0% | |
| !!! | GTTTTGAGACAGTGATTTTT+TGG | - | chr2_1:74192170-74192189 | Msa0224330:five_prime_UTR | 30.0% |
| ACATGGTATTTGCATATTAC+TGG | - | chr2_1:74192238-74192257 | Msa0224330:five_prime_UTR | 30.0% | |
| GCATATTACTGGATTTCAAA+TGG | - | chr2_1:74192249-74192268 | Msa0224330:five_prime_UTR | 30.0% | |
| ! | ATTTCAAATGGAGTACCTTA+GGG | - | chr2_1:74192261-74192280 | Msa0224330:five_prime_UTR | 30.0% |
| !!! | TTAATTTTTTGCTGGTGTGT+TGG | - | chr2_1:74192488-74192507 | Msa0224330:five_prime_UTR | 30.0% |
| !!! | TAATTTTTTGCTGGTGTGTT+GGG | - | chr2_1:74192489-74192508 | Msa0224330:five_prime_UTR | 30.0% |
| ! | ATTTTAGGCAAATTCATGAC+AGG | - | chr2_1:74192680-74192699 | Msa0224330:five_prime_UTR | 30.0% |
| TTGTTGGAATTAGAGTTAAG+AGG | - | chr2_1:74193166-74193185 | Msa0224330:five_prime_UTR | 30.0% | |
| TTGGGCAATTAAACAACCAA+TGG | - | chr2_1:74190025-74190044 | Msa0224330:three_prime_UTR | 35.0% | |
| AATCCAGTTGTTTGGGAATT+TGG | - | chr2_1:74190223-74190242 | Msa0224330:three_prime_UTR | 35.0% | |
| TTTGGGAATTTGGATGATCT+CGG | - | chr2_1:74190233-74190252 | Msa0224330:three_prime_UTR | 35.0% | |
| !! | ATAATGTTGTTGTTGGTGGT+TGG | - | chr2_1:74190381-74190400 | Msa0224330:CDS | 35.0% |
| AAAGCAAACGTACTGAAATC+AGG | + | chr2_1:74190473-74190492 | None:intergenic | 35.0% | |
| TGCTTTCTTTCTTGAGAGTT+TGG | - | chr2_1:74190487-74190506 | Msa0224330:intron | 35.0% | |
| GCTTTCTTTCTTGAGAGTTT+GGG | - | chr2_1:74190488-74190507 | Msa0224330:intron | 35.0% | |
| !! | GAATGATTACTGCTTTTCTC+AGG | - | chr2_1:74190690-74190709 | Msa0224330:intron | 35.0% |
| TTTGATGAGATGTTAAGGCA+AGG | - | chr2_1:74190743-74190762 | Msa0224330:intron | 35.0% | |
| GCATAATTGTTTGATGAAGG+AGG | + | chr2_1:74190795-74190814 | None:intergenic | 35.0% | |
| GCTGCATAATTGTTTGATGA+AGG | + | chr2_1:74190798-74190817 | None:intergenic | 35.0% | |
| TAGATCATCATAGCTGCATA+TGG | + | chr2_1:74190830-74190849 | None:intergenic | 35.0% | |
| CTTATGCGTCTTTCTAAGTT+TGG | - | chr2_1:74190905-74190924 | Msa0224330:intron | 35.0% | |
| GTGGAACATTGTTAAGTGTA+TGG | - | chr2_1:74190933-74190952 | Msa0224330:intron | 35.0% | |
| AACATTGTTAAGTGTATGGC+AGG | - | chr2_1:74190937-74190956 | Msa0224330:intron | 35.0% | |
| GTTTACGAGTACATCATAAG+CGG | - | chr2_1:74190995-74191014 | Msa0224330:intron | 35.0% | |
| CAAGTTGTCCTATGTTGTAA+AGG | + | chr2_1:74191021-74191040 | None:intergenic | 35.0% | |
| TGAAAATGCTGTTCTTGTCA+TGG | - | chr2_1:74191039-74191058 | Msa0224330:intron | 35.0% | |
| !!! | TTCTCGCGTTTTTTAGTGAA+CGG | + | chr2_1:74191186-74191205 | None:intergenic | 35.0% |
| ! | TTTTGAGCAGACATCATAAC+TGG | - | chr2_1:74191232-74191251 | Msa0224330:intron | 35.0% |
| AATACGTTACCAGTTTCGTA+TGG | + | chr2_1:74191512-74191531 | None:intergenic | 35.0% | |
| ATGAAGTCATGTGACATTTG+CGG | + | chr2_1:74191616-74191635 | None:intergenic | 35.0% | |
| ! | GTTTTTCTGTGGATTTAGGA+AGG | - | chr2_1:74191733-74191752 | Msa0224330:intron | 35.0% |
| TAGGAAAAGAAACACAGAAG+TGG | + | chr2_1:74191997-74192016 | None:intergenic | 35.0% | |
| CAGAAAGATAATAACTAGCC+CGG | + | chr2_1:74192033-74192052 | None:intergenic | 35.0% | |
| !! | GGGCTAGTTATTATCTTTCT+GGG | - | chr2_1:74192032-74192051 | Msa0224330:five_prime_UTR | 35.0% |
| GAAAGTTGAAACACATAGGT+AGG | - | chr2_1:74192074-74192093 | Msa0224330:five_prime_UTR | 35.0% | |
| ACCGTCTGTTATAGGATTAT+AGG | - | chr2_1:74192110-74192129 | Msa0224330:five_prime_UTR | 35.0% | |
| ! | GATTTCAAATGGAGTACCTT+AGG | - | chr2_1:74192260-74192279 | Msa0224330:five_prime_UTR | 35.0% |
| !!! | AATTTTTTGCTGGTGTGTTG+GGG | - | chr2_1:74192490-74192509 | Msa0224330:five_prime_UTR | 35.0% |
| ! | ACAGAATGGCAGCAAATTTT+AGG | - | chr2_1:74192665-74192684 | Msa0224330:five_prime_UTR | 35.0% |
| TTGCATGATATCCATCTTGT+TGG | + | chr2_1:74192709-74192728 | None:intergenic | 35.0% | |
| CATGTCAGAAATCTTGCTTA+TGG | + | chr2_1:74192736-74192755 | None:intergenic | 35.0% | |
| ATTGAAACCGTAACAGATCT+TGG | - | chr2_1:74192780-74192799 | Msa0224330:five_prime_UTR | 35.0% | |
| !!! | CAGCTTTTTCATCCAAGAAT+GGG | + | chr2_1:74192874-74192893 | None:intergenic | 35.0% |
| ! | GGTTTTACACCTACTTTCAA+AGG | - | chr2_1:74192893-74192912 | Msa0224330:five_prime_UTR | 35.0% |
| GAAAAGAAGAAATCACAGGT+GGG | - | chr2_1:74193041-74193060 | Msa0224330:five_prime_UTR | 35.0% | |
| TTTAGTAGATTGCAACCTTG+AGG | - | chr2_1:74193091-74193110 | Msa0224330:five_prime_UTR | 35.0% | |
| TCAAAACAATCTTGTCCTCA+AGG | + | chr2_1:74193109-74193128 | None:intergenic | 35.0% | |
| !! | TTGAGGACAAGATTGTTTTG+AGG | - | chr2_1:74193108-74193127 | Msa0224330:five_prime_UTR | 35.0% |
| ! | GTATAGCTGTAGAGTTTGTT+AGG | - | chr2_1:74193192-74193211 | Msa0224330:five_prime_UTR | 35.0% |
| TTTCAGTTGTTAGACCTCTT+AGG | - | chr2_1:74193228-74193247 | Msa0224330:five_prime_UTR | 35.0% | |
| TTCAGTTGTTAGACCTCTTA+GGG | - | chr2_1:74193229-74193248 | Msa0224330:five_prime_UTR | 35.0% | |
| TCAGAATCCAAATCCGTTGA+TGG | - | chr2_1:74189831-74189850 | Msa0224330:three_prime_UTR | 40.0% | |
| CAGAATCCAAATCCGTTGAT+GGG | - | chr2_1:74189832-74189851 | Msa0224330:three_prime_UTR | 40.0% | |
| ! | CAAAAACCCATCAACGGATT+TGG | + | chr2_1:74189841-74189860 | None:intergenic | 40.0% |
| TACCGCGTAGTTTATCTTCA+GGG | + | chr2_1:74189866-74189885 | None:intergenic | 40.0% | |
| ATACCGCGTAGTTTATCTTC+AGG | + | chr2_1:74189867-74189886 | None:intergenic | 40.0% | |
| TCTTCAGAAGCTAAAGGGTA+AGG | - | chr2_1:74189890-74189909 | Msa0224330:three_prime_UTR | 40.0% | |
| ! | TTGAACTTTGGGAATTTGGG+TGG | - | chr2_1:74189978-74189997 | Msa0224330:three_prime_UTR | 40.0% |
| ATTAAACAACCAATGGTGCC+CGG | - | chr2_1:74190032-74190051 | Msa0224330:three_prime_UTR | 40.0% | |
| ! | CATGTCATTGTTAAGGCACT+GGG | - | chr2_1:74190071-74190090 | Msa0224330:three_prime_UTR | 40.0% |
| TCGAAAGCAATCCAGTTGTT+TGG | - | chr2_1:74190215-74190234 | Msa0224330:three_prime_UTR | 40.0% | |
| CGAAAGCAATCCAGTTGTTT+GGG | - | chr2_1:74190216-74190235 | Msa0224330:three_prime_UTR | 40.0% | |
| CATCCAAATTCCCAAACAAC+TGG | + | chr2_1:74190229-74190248 | None:intergenic | 40.0% | |
| TTGGGAATTTGGATGATCTC+GGG | - | chr2_1:74190234-74190253 | Msa0224330:three_prime_UTR | 40.0% | |
| ! | CAAAAGCACATTCAAAGCCT+CGG | + | chr2_1:74190273-74190292 | None:intergenic | 40.0% |
| TAGGGTGAATGAGATTGAGA+GGG | - | chr2_1:74190415-74190434 | Msa0224330:CDS | 40.0% | |
| TGAGATTGAGAGGGTTATGA+AGG | - | chr2_1:74190424-74190443 | Msa0224330:CDS | 40.0% | |
| TGAGAGGGTTATGAAGGAAA+TGG | - | chr2_1:74190430-74190449 | Msa0224330:CDS | 40.0% | |
| TATGAAGGAAATGGAAGCTG+AGG | - | chr2_1:74190439-74190458 | Msa0224330:CDS | 40.0% | |
| ATGAAGGAAATGGAAGCTGA+GGG | - | chr2_1:74190440-74190459 | Msa0224330:CDS | 40.0% | |
| ! | TGAGGTTTTCGGTAGTATGA+AGG | - | chr2_1:74190538-74190557 | Msa0224330:intron | 40.0% |
| ATCATCATAGCTGCATATGG+TGG | + | chr2_1:74190827-74190846 | None:intergenic | 40.0% | |
| ATAAGCGGCCTTTACAACAT+AGG | - | chr2_1:74191010-74191029 | Msa0224330:intron | 40.0% | |
| AAATGCTGTTCTTGTCATGG+AGG | - | chr2_1:74191042-74191061 | Msa0224330:intron | 40.0% | |
| TTACTGTATACAAGCCTGCT+GGG | + | chr2_1:74191091-74191110 | None:intergenic | 40.0% | |
| TTTACTGTATACAAGCCTGC+TGG | + | chr2_1:74191092-74191111 | None:intergenic | 40.0% | |
| TTGCTTCAAACCTAACAGAG+AGG | - | chr2_1:74191128-74191147 | Msa0224330:intron | 40.0% | |
| TGCTTCAAACCTAACAGAGA+GGG | - | chr2_1:74191129-74191148 | Msa0224330:intron | 40.0% | |
| !!! | TCTCGCGTTTTTTAGTGAAC+GGG | + | chr2_1:74191185-74191204 | None:intergenic | 40.0% |
| AGAAGTTATTGGCGCGATAA+CGG | - | chr2_1:74191202-74191221 | Msa0224330:intron | 40.0% | |
| GCAATATGGGAATCCTTCTT+AGG | - | chr2_1:74191539-74191558 | Msa0224330:intron | 40.0% | |
| CTTCTTAGGAGTTAGGACAT+GGG | - | chr2_1:74191553-74191572 | Msa0224330:intron | 40.0% | |
| ATAACTCTATTCTGCTGCTG+TGG | - | chr2_1:74191948-74191967 | Msa0224330:five_prime_UTR | 40.0% | |
| TTCCTATCTTTCTGCACTTC+CGG | - | chr2_1:74192011-74192030 | Msa0224330:five_prime_UTR | 40.0% | |
| !! | CGGGCTAGTTATTATCTTTC+TGG | - | chr2_1:74192031-74192050 | Msa0224330:five_prime_UTR | 40.0% |
| AACACATAGGTAGGTTGCAA+TGG | - | chr2_1:74192083-74192102 | Msa0224330:five_prime_UTR | 40.0% | |
| !! | ATGGAAGTACCGTCTGTTAT+AGG | - | chr2_1:74192102-74192121 | Msa0224330:five_prime_UTR | 40.0% |
| !! | AGATTTCAAGTGTTGCTTGC+TGG | - | chr2_1:74192413-74192432 | Msa0224330:five_prime_UTR | 40.0% |
| ATGACAGGATTCCAACAAGA+TGG | - | chr2_1:74192695-74192714 | Msa0224330:five_prime_UTR | 40.0% | |
| TGCTGATCCAAGATCTGTTA+CGG | + | chr2_1:74192790-74192809 | None:intergenic | 40.0% | |
| GAACGACACACTTACAAACT+CGG | - | chr2_1:74192818-74192837 | Msa0224330:five_prime_UTR | 40.0% | |
| ATCAAGAACAGACCCATTCT+TGG | - | chr2_1:74192859-74192878 | Msa0224330:five_prime_UTR | 40.0% | |
| !!! | CCAGCTTTTTCATCCAAGAA+TGG | + | chr2_1:74192875-74192894 | None:intergenic | 40.0% |
| CCATTCTTGGATGAAAAAGC+TGG | - | chr2_1:74192872-74192891 | Msa0224330:five_prime_UTR | 40.0% | |
| TACACCTACTTTCAAAGGCA+CGG | - | chr2_1:74192898-74192917 | Msa0224330:five_prime_UTR | 40.0% | |
| GAATTAGAGCAAGCTGAAGA+CGG | - | chr2_1:74193019-74193038 | Msa0224330:five_prime_UTR | 40.0% | |
| GACGGAAAAGAAGAAATCAC+AGG | - | chr2_1:74193037-74193056 | Msa0224330:five_prime_UTR | 40.0% | |
| GGAAAAGAAGAAATCACAGG+TGG | - | chr2_1:74193040-74193059 | Msa0224330:five_prime_UTR | 40.0% | |
| !!! | AGGACAAGATTGTTTTGAGG+AGG | - | chr2_1:74193111-74193130 | Msa0224330:five_prime_UTR | 40.0% |
| !!! | GGACAAGATTGTTTTGAGGA+GGG | - | chr2_1:74193112-74193131 | Msa0224330:five_prime_UTR | 40.0% |
| !!! | GACAAGATTGTTTTGAGGAG+GGG | - | chr2_1:74193113-74193132 | Msa0224330:five_prime_UTR | 40.0% |
| TCAGTTGTTAGACCTCTTAG+GGG | - | chr2_1:74193230-74193249 | Msa0224330:five_prime_UTR | 40.0% | |
| ATGCTCTAGTGATCTAGTGA+AGG | - | chr2_1:74193289-74193308 | Msa0224330:five_prime_UTR | 40.0% | |
| TGCTCTAGTGATCTAGTGAA+GGG | - | chr2_1:74193290-74193309 | Msa0224330:five_prime_UTR | 40.0% | |
| ! | TTGCATTCAAGTTACCCCAA+GGG | + | chr2_1:74193324-74193343 | None:intergenic | 40.0% |
| AGGGGACAAAAACCCATCAA+CGG | + | chr2_1:74189847-74189866 | None:intergenic | 45.0% | |
| TCCCCTGAAGATAAACTACG+CGG | - | chr2_1:74189861-74189880 | Msa0224330:three_prime_UTR | 45.0% | |
| ACCGCGTAGTTTATCTTCAG+GGG | + | chr2_1:74189865-74189884 | None:intergenic | 45.0% | |
| GAATTTGGGTGGTGAAGCTA+TGG | - | chr2_1:74189989-74190008 | Msa0224330:three_prime_UTR | 45.0% | |
| TTAAACAACCAATGGTGCCC+GGG | - | chr2_1:74190033-74190052 | Msa0224330:three_prime_UTR | 45.0% | |
| ATGGTAAGTACCAACATCCC+CGG | + | chr2_1:74190054-74190073 | None:intergenic | 45.0% | |
| CCAGTGCCTTAACAATGACA+TGG | + | chr2_1:74190073-74190092 | None:intergenic | 45.0% | |
| CCATGTCATTGTTAAGGCAC+TGG | - | chr2_1:74190070-74190089 | Msa0224330:three_prime_UTR | 45.0% | |
| !! | TTGTTAAGGCACTGGGAAGA+AGG | - | chr2_1:74190078-74190097 | Msa0224330:three_prime_UTR | 45.0% |
| GATTGCTTTCGACACATGAC+CGG | + | chr2_1:74190207-74190226 | None:intergenic | 45.0% | |
| !! | TGTTGGTGGTTGGTCTAAGT+TGG | - | chr2_1:74190391-74190410 | Msa0224330:CDS | 45.0% |
| !! | GTTGGTGGTTGGTCTAAGTT+GGG | - | chr2_1:74190392-74190411 | Msa0224330:CDS | 45.0% |
| !! | TGGTTGGTCTAAGTTGGGTA+GGG | - | chr2_1:74190397-74190416 | Msa0224330:CDS | 45.0% |
| GTAGGGTGAATGAGATTGAG+AGG | - | chr2_1:74190414-74190433 | Msa0224330:CDS | 45.0% | |
| TGAAGGAAATGGAAGCTGAG+GGG | - | chr2_1:74190441-74190460 | Msa0224330:CDS | 45.0% | |
| TTTGGGTAGAGCAGGTAGAA+TGG | - | chr2_1:74190505-74190524 | Msa0224330:intron | 45.0% | |
| TAGAGCAGGTAGAATGGATG+AGG | - | chr2_1:74190511-74190530 | Msa0224330:intron | 45.0% | |
| TAGAATGGATGAGGCTGTTG+AGG | - | chr2_1:74190520-74190539 | Msa0224330:intron | 45.0% | |
| ! | GATGAGGCTGTTGAGGTTTT+CGG | - | chr2_1:74190527-74190546 | Msa0224330:intron | 45.0% |
| !! | TTACTGCTTTTCTCAGGACC+AGG | - | chr2_1:74190696-74190715 | Msa0224330:intron | 45.0% |
| ! | TTTTCTCAGGACCAGGAAAG+TGG | - | chr2_1:74190703-74190722 | Msa0224330:intron | 45.0% |
| AAGGAGGTTATAGTCCCAGT+AGG | + | chr2_1:74190779-74190798 | None:intergenic | 45.0% | |
| GCTACTTCCTCGCAACATTA+CGG | - | chr2_1:74191305-74191324 | Msa0224330:intron | 45.0% | |
| ACTAGATCCGTAATGTTGCG+AGG | + | chr2_1:74191315-74191334 | None:intergenic | 45.0% | |
| GGGAATCCTTCTTAGGAGTT+AGG | - | chr2_1:74191546-74191565 | Msa0224330:intron | 45.0% | |
| CCATGTCCTAACTCCTAAGA+AGG | + | chr2_1:74191555-74191574 | None:intergenic | 45.0% | |
| CCTTCTTAGGAGTTAGGACA+TGG | - | chr2_1:74191552-74191571 | Msa0224330:intron | 45.0% | |
| AAGTCATGTGACATTTGCGG+AGG | + | chr2_1:74191613-74191632 | None:intergenic | 45.0% | |
| TCCTATCTTTCTGCACTTCC+GGG | - | chr2_1:74192012-74192031 | Msa0224330:five_prime_UTR | 45.0% | |
| CAAGCTGCAACGCACAATTA+GGG | + | chr2_1:74192149-74192168 | None:intergenic | 45.0% | |
| TCAAGCTGCAACGCACAATT+AGG | + | chr2_1:74192150-74192169 | None:intergenic | 45.0% | |
| ! | ATGGAGTACCTTAGGGATCA+CGG | - | chr2_1:74192268-74192287 | Msa0224330:five_prime_UTR | 45.0% |
| GATATATGCCGTGATCCCTA+AGG | + | chr2_1:74192279-74192298 | None:intergenic | 45.0% | |
| !! | TGGAAAAGGGTGTCAAGAAC+AGG | + | chr2_1:74192301-74192320 | None:intergenic | 45.0% |
| !! | TTCAAGTGTTGCTTGCTGGT+TGG | - | chr2_1:74192417-74192436 | Msa0224330:five_prime_UTR | 45.0% |
| ! | TTCAAAGGCACGGATCCAAT+AGG | - | chr2_1:74192908-74192927 | Msa0224330:five_prime_UTR | 45.0% |
| ! | TCAAAGGCACGGATCCAATA+GGG | - | chr2_1:74192909-74192928 | Msa0224330:five_prime_UTR | 45.0% |
| AGTCGAACCTTCAAAGCTGA+AGG | - | chr2_1:74192970-74192989 | Msa0224330:five_prime_UTR | 45.0% | |
| TTCAAAGCTGAAGGCTGACA+CGG | - | chr2_1:74192979-74192998 | Msa0224330:five_prime_UTR | 45.0% | |
| !!! | TTGAGGAGGGGTGTTTTGTT+AGG | - | chr2_1:74193125-74193144 | Msa0224330:five_prime_UTR | 45.0% |
| TTGTTAGACCTCTTAGGGGA+GGG | - | chr2_1:74193234-74193253 | Msa0224330:five_prime_UTR | 45.0% | |
| ! | CTTGCATTCAAGTTACCCCA+AGG | + | chr2_1:74193325-74193344 | None:intergenic | 45.0% |
| CTTGGGGTAACTTGAATGCA+AGG | - | chr2_1:74193323-74193342 | Msa0224330:five_prime_UTR | 45.0% | |
| TAAACAACCAATGGTGCCCG+GGG | - | chr2_1:74190034-74190053 | Msa0224330:three_prime_UTR | 50.0% | |
| TGGTAAGTACCAACATCCCC+GGG | + | chr2_1:74190053-74190072 | None:intergenic | 50.0% | |
| CTTTGTCGACGCTGTCATGT+CGG | - | chr2_1:74190299-74190318 | Msa0224330:CDS | 50.0% | |
| !! | GTGGTTGGTCTAAGTTGGGT+AGG | - | chr2_1:74190396-74190415 | Msa0224330:CDS | 50.0% |
| CTTGAGAGTTTGGGTAGAGC+AGG | - | chr2_1:74190497-74190516 | Msa0224330:intron | 50.0% | |
| AAGGAGTTGTGCCTCCTACT+GGG | - | chr2_1:74190762-74190781 | Msa0224330:intron | 50.0% | |
| GAGGTTATAGTCCCAGTAGG+AGG | + | chr2_1:74190776-74190795 | None:intergenic | 50.0% | |
| TGGCAGGAGATGCAAGAATG+TGG | - | chr2_1:74190953-74190972 | Msa0224330:intron | 50.0% | |
| GGCAGGAGATGCAAGAATGT+GGG | - | chr2_1:74190954-74190973 | Msa0224330:intron | 50.0% | |
| TGCTGTTCTTGTCATGGAGG+AGG | - | chr2_1:74191045-74191064 | Msa0224330:intron | 50.0% | |
| ACCTAACAGAGAGGGCTTAC+AGG | - | chr2_1:74191137-74191156 | Msa0224330:intron | 50.0% | |
| ! | GTTATTGGCGCGATAACGGT+TGG | - | chr2_1:74191206-74191225 | Msa0224330:intron | 50.0% |
| ! | TTTTGCTGGTGTGTTGGGGA+TGG | - | chr2_1:74192494-74192513 | Msa0224330:five_prime_UTR | 50.0% |
| ! | GGATCCGTGCCTTTGAAAGT+AGG | + | chr2_1:74192905-74192924 | None:intergenic | 50.0% |
| ! | GTGTCAGCCTTCAGCTTTGA+AGG | + | chr2_1:74192980-74192999 | None:intergenic | 50.0% |
| GTTGTTAGACCTCTTAGGGG+AGG | - | chr2_1:74193233-74193252 | Msa0224330:five_prime_UTR | 50.0% | |
| TGTTAGACCTCTTAGGGGAG+GGG | - | chr2_1:74193235-74193254 | Msa0224330:five_prime_UTR | 50.0% | |
| ! | CGGGTTGAATCGTGATACCG+AGG | - | chr2_1:74190253-74190272 | Msa0224330:exon | 55.0% |
| !! | CGACATGACAGCGTCGACAA+AGG | + | chr2_1:74190301-74190320 | None:intergenic | 55.0% |
| !! | TCATGTCGGTGCTGCAGCTT+CGG | - | chr2_1:74190313-74190332 | Msa0224330:CDS | 55.0% |
| ! | AAGTGCATCGGCCACTTTCC+TGG | + | chr2_1:74190717-74190736 | None:intergenic | 55.0% |
| CAAGGAGTTGTGCCTCCTAC+TGG | - | chr2_1:74190761-74190780 | Msa0224330:intron | 55.0% | |
| ATGGAGGAGGCTTTGCGCAA+AGG | - | chr2_1:74191058-74191077 | Msa0224330:intron | 55.0% | |
| TGGAGGAGGCTTTGCGCAAA+GGG | - | chr2_1:74191059-74191078 | Msa0224330:intron | 55.0% | |
| GCCTGTAAGCCCTCTCTGTT+AGG | + | chr2_1:74191141-74191160 | None:intergenic | 55.0% | |
| ! | GCCCGGAAGTGCAGAAAGAT+AGG | + | chr2_1:74192016-74192035 | None:intergenic | 55.0% |
| CACGGATCCAATAGGGTTGC+TGG | - | chr2_1:74192916-74192935 | Msa0224330:five_prime_UTR | 55.0% | |
| GTGAGAGCCAGCAACCCTAT+TGG | + | chr2_1:74192926-74192945 | None:intergenic | 55.0% | |
| AAAGCTGAAGGCTGACACGG+AGG | - | chr2_1:74192982-74193001 | Msa0224330:five_prime_UTR | 55.0% | |
| ATGATTGCCCCTCCCCTAAG+AGG | + | chr2_1:74193245-74193264 | None:intergenic | 55.0% | |
| !! | TGAAGGGAGAGTGCTCCCTT+GGG | - | chr2_1:74193306-74193325 | Msa0224330:five_prime_UTR | 55.0% |
| GCAAAGGGTTCTGTCCCAGC+AGG | - | chr2_1:74191074-74191093 | Msa0224330:intron | 60.0% | |
| !! | GTGAAGGGAGAGTGCTCCCT+TGG | - | chr2_1:74193305-74193324 | Msa0224330:five_prime_UTR | 60.0% |
| !! | GAAGGGAGAGTGCTCCCTTG+GGG | - | chr2_1:74193307-74193326 | Msa0224330:five_prime_UTR | 60.0% |
| CCAACATCCCCGGGCACCAT+TGG | + | chr2_1:74190044-74190063 | None:intergenic | 65.0% | |
| CCAATGGTGCCCGGGGATGT+TGG | - | chr2_1:74190041-74190060 | Msa0224330:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 74189820 | 74193366 | 74189820 | ID=Msa0224330;Name=Msa0224330 |
| chr2_1 | mRNA | 74189820 | 74193366 | 74189820 | ID=Msa0224330-mRNA-1;Parent=Msa0224330;Name=Msa0224330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1453|1|1|1|0|0|2|437|95 |
| chr2_1 | exon | 74189820 | 74190484 | 74189820 | ID=Msa0224330-mRNA-1:exon:21960;Parent=Msa0224330-mRNA-1 |
| chr2_1 | exon | 74191854 | 74193366 | 74191854 | ID=Msa0224330-mRNA-1:exon:21959;Parent=Msa0224330-mRNA-1 |
| chr2_1 | five_prime_UTR | 74191914 | 74193366 | 74191914 | ID=Msa0224330-mRNA-1:five_prime_utr;Parent=Msa0224330-mRNA-1 |
| chr2_1 | CDS | 74191854 | 74191913 | 74191854 | ID=Msa0224330-mRNA-1:cds;Parent=Msa0224330-mRNA-1 |
| chr2_1 | CDS | 74190257 | 74190484 | 74190257 | ID=Msa0224330-mRNA-1:cds;Parent=Msa0224330-mRNA-1 |
| chr2_1 | three_prime_UTR | 74189820 | 74190256 | 74189820 | ID=Msa0224330-mRNA-1:three_prime_utr;Parent=Msa0224330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
