Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420250 | PNX59699.1 | 59.375 | 64 | 25 | 1 | 1 | 63 | 1 | 64 | 2.27e-16 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420250 | A0A2K3K079 | 59.375 | 64 | 25 | 1 | 1 | 63 | 1 | 64 | 1.09e-16 | 77.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0112750 | Msa0420250 | 0.805156 | 1.529253e-49 | -8.615850e-47 |
| Msa0178930 | Msa0420250 | 0.801926 | 7.151144e-49 | -8.615850e-47 |
| Msa0379640 | Msa0420250 | 0.805421 | 1.345668e-49 | -8.615850e-47 |
| Msa0420250 | Msa0484780 | 0.821743 | 3.433472e-53 | -8.615850e-47 |
| Msa0420250 | Msa0512890 | 0.844305 | 8.210992e-59 | -8.615850e-47 |
| Msa0420250 | Msa0512900 | 0.818579 | 1.821231e-52 | -8.615850e-47 |
| Msa0420250 | Msa0657970 | 0.810623 | 1.051309e-50 | -8.615850e-47 |
| Msa0420250 | Msa0667050 | 0.807190 | 5.705899e-50 | -8.615850e-47 |
| Msa0420250 | Msa0673460 | 0.803538 | 3.324024e-49 | -8.615850e-47 |
| Msa0420250 | Msa0724210 | 0.810443 | 1.149882e-50 | -8.615850e-47 |
| Msa0420250 | Msa1082500 | 0.837980 | 3.773809e-57 | -8.615850e-47 |
| Msa0420250 | Msa1392260 | 0.807370 | 5.225969e-50 | -8.615850e-47 |
| Msa0420250 | Msa1429900 | 0.810986 | 8.775307e-51 | -8.615850e-47 |
| Msa0420250 | Msa1466540 | 0.812851 | 3.443286e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420250 | MtrunA17_Chr8g0391561 | 53.125 | 64 | 20 | 2 | 4 | 63 | 5 | 62 | 3.61e-13 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCCAACGACGGAAATTA+TGG | 0.252778 | 3_2:-68703896 | None:intergenic |
| TTCCACAATCTAAGGAATTA+TGG | 0.275297 | 3_2:+68703737 | Msa0420250:exon |
| CACCTGCCTTCCACAATCTA+AGG | 0.356067 | 3_2:+68703729 | Msa0420250:five_prime_UTR |
| ACTTCAATTCTGGAAACGTC+TGG | 0.392283 | 3_2:-68703864 | None:intergenic |
| CTTCACACTGCTAGACATCT+AGG | 0.444708 | 3_2:+68703926 | Msa0420250:CDS |
| ATGGCCATAATTTCCGTCGT+TGG | 0.472194 | 3_2:+68703892 | Msa0420250:CDS |
| TTCCTTAGATTGTGGAAGGC+AGG | 0.477616 | 3_2:-68703731 | None:intergenic |
| ACAATCTAAGGAATTATGGC+TGG | 0.522622 | 3_2:+68703741 | Msa0420250:exon |
| AGCCATAATTCCTTAGATTG+TGG | 0.526215 | 3_2:-68703739 | None:intergenic |
| CTTCAATTCTGGAAACGTCT+GGG | 0.550347 | 3_2:-68703863 | None:intergenic |
| TACTGATCCTCCTCCGACAG+TGG | 0.555859 | 3_2:+68703821 | Msa0420250:CDS |
| ATAATTCCTTAGATTGTGGA+AGG | 0.574451 | 3_2:-68703735 | None:intergenic |
| TAGGTGACCACTGTCGGAGG+AGG | 0.579910 | 3_2:-68703828 | None:intergenic |
| TTTGCATAGGTGACCACTGT+CGG | 0.584337 | 3_2:-68703834 | None:intergenic |
| TGTGGAAGGCAGGTGACTGA+AGG | 0.588000 | 3_2:-68703721 | None:intergenic |
| TGTGCAGGAAAATACAAGCA+AGG | 0.593545 | 3_2:+68707334 | Msa0420250:intron |
| GAGGATCAGTAGCAACAACA+AGG | 0.606584 | 3_2:-68703809 | None:intergenic |
| TGACAATAAGAAGAATGTCT+CGG | 0.627026 | 3_2:+68703779 | Msa0420250:CDS |
| AGATGCGTTCATGCCAACGA+CGG | 0.660184 | 3_2:-68703905 | None:intergenic |
| GCATAGGTGACCACTGTCGG+AGG | 0.668853 | 3_2:-68703831 | None:intergenic |
| AGGATCAGTAGCAACAACAA+GGG | 0.691715 | 3_2:-68703808 | None:intergenic |
| AAAATGCAACGTAAAACCTG+AGG | 0.701899 | 3_2:-68703678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAGTTAATTTAGTT+AGG | + | chr3_2:68705196-68705215 | Msa0420250:intron | 10.0% |
| !! | TAATATGATTATAGTTAATT+AGG | + | chr3_2:68705373-68705392 | Msa0420250:intron | 10.0% |
| !! | TAATCCTTAAAATAATAAAA+AGG | + | chr3_2:68706520-68706539 | Msa0420250:intron | 10.0% |
| !!! | AAATCCTTTTTATTATTTTA+AGG | - | chr3_2:68706527-68706546 | None:intergenic | 10.0% |
| !!! | TTAAGTTTGATTTAAAATTG+GGG | - | chr3_2:68704502-68704521 | None:intergenic | 15.0% |
| !!! | CTTAAGTTTGATTTAAAATT+GGG | - | chr3_2:68704503-68704522 | None:intergenic | 15.0% |
| !! | TTTCAGGAATAATTTAAAAA+GGG | - | chr3_2:68705039-68705058 | None:intergenic | 15.0% |
| !! | AAAAGTGATATATTTCATAT+AGG | + | chr3_2:68707208-68707227 | Msa0420250:intron | 15.0% |
| !!! | CCTTAAGTTTGATTTAAAAT+TGG | - | chr3_2:68704504-68704523 | None:intergenic | 20.0% |
| !!! | CCAATTTTAAATCAAACTTA+AGG | + | chr3_2:68704501-68704520 | Msa0420250:intron | 20.0% |
| !! | GTTTCAGGAATAATTTAAAA+AGG | - | chr3_2:68705040-68705059 | None:intergenic | 20.0% |
| !! | TATACTCAAAAAAAACTTCT+TGG | + | chr3_2:68705067-68705086 | Msa0420250:intron | 20.0% |
| !! | ATAAATATAGTGAAAGCTTA+TGG | + | chr3_2:68705772-68705791 | Msa0420250:intron | 20.0% |
| !! | AGAAATATCTTTCTTCTTTA+TGG | + | chr3_2:68706201-68706220 | Msa0420250:intron | 20.0% |
| !! | GAAATATCTTTCTTCTTTAT+GGG | + | chr3_2:68706202-68706221 | Msa0420250:intron | 20.0% |
| !! | TGGAGTAAATATACATTTAT+GGG | - | chr3_2:68706261-68706280 | None:intergenic | 20.0% |
| !! | TTGGAGTAAATATACATTTA+TGG | - | chr3_2:68706262-68706281 | None:intergenic | 20.0% |
| !! | TAAGAGCAAGAAAATTAATA+TGG | - | chr3_2:68706330-68706349 | None:intergenic | 20.0% |
| !! | ATAATGTAGAAAGAATTGTA+TGG | + | chr3_2:68706763-68706782 | Msa0420250:intron | 20.0% |
| !! | ACACTTATCAACTAAAAATT+GGG | - | chr3_2:68707186-68707205 | None:intergenic | 20.0% |
| !! | AACACTTATCAACTAAAAAT+TGG | - | chr3_2:68707187-68707206 | None:intergenic | 20.0% |
| !! | TATATTTCATATAGGAGTTT+AGG | + | chr3_2:68707216-68707235 | Msa0420250:intron | 20.0% |
| !! | TGACATATTTACACAATAAT+TGG | - | chr3_2:68707283-68707302 | None:intergenic | 20.0% |
| ! | ATAACGTAGAAAGAATTGTA+TGG | - | chr3_2:68703959-68703978 | None:intergenic | 25.0% |
| ! | TACGTTATCTGATTTATGTT+TGG | + | chr3_2:68703971-68703990 | Msa0420250:intron | 25.0% |
| ! | TGAGTATAACTTAAAGTTTC+AGG | - | chr3_2:68705055-68705074 | None:intergenic | 25.0% |
| !!! | TTTAAGCAGTTGTTTTATCT+TGG | + | chr3_2:68705282-68705301 | Msa0420250:intron | 25.0% |
| ! | TGTAAAGTACGAATTAAGTT+AGG | + | chr3_2:68705333-68705352 | Msa0420250:intron | 25.0% |
| ! | ATTTAGATCTCAAGTCTATT+GGG | - | chr3_2:68705654-68705673 | None:intergenic | 25.0% |
| ! | AATTTAGATCTCAAGTCTAT+TGG | - | chr3_2:68705655-68705674 | None:intergenic | 25.0% |
| !! | GATCTAAATTACACTTTTGT+AGG | + | chr3_2:68705665-68705684 | Msa0420250:intron | 25.0% |
| ! | AATGTTATCTCAAAGAGATA+AGG | + | chr3_2:68705746-68705765 | Msa0420250:intron | 25.0% |
| !! | TAAAAGCTTTTGATCCATTA+AGG | - | chr3_2:68706235-68706254 | None:intergenic | 25.0% |
| ! | AAAGATCATATGACTTGATT+TGG | - | chr3_2:68706281-68706300 | None:intergenic | 25.0% |
| !! | ATATGATCTTTTCCTTAACT+TGG | + | chr3_2:68706290-68706309 | Msa0420250:intron | 25.0% |
| !!! | TGTCCATTTTTCAATTTGTT+TGG | + | chr3_2:68706806-68706825 | Msa0420250:intron | 25.0% |
| !!! | GTCCATTTTTCAATTTGTTT+GGG | + | chr3_2:68706807-68706826 | Msa0420250:intron | 25.0% |
| ! | ATCCCAAACAAATTGAAAAA+TGG | - | chr3_2:68706812-68706831 | None:intergenic | 25.0% |
| ! | AAAGTTTAAGCAGCAATAAA+AGG | + | chr3_2:68707100-68707119 | Msa0420250:intron | 25.0% |
| !!! | GTTATTCTTTTTCATTCTGT+TGG | - | chr3_2:68707155-68707174 | None:intergenic | 25.0% |
| !! | GTTGCATTTTATTGTTTTGC+AGG | + | chr3_2:68703691-68703710 | Msa0420250:five_prime_UTR | 30.0% |
| ATAATTCCTTAGATTGTGGA+AGG | - | chr3_2:68703738-68703757 | None:intergenic | 30.0% | |
| TTCCACAATCTAAGGAATTA+TGG | + | chr3_2:68703737-68703756 | Msa0420250:exon | 30.0% | |
| TGACAATAAGAAGAATGTCT+CGG | + | chr3_2:68703779-68703798 | Msa0420250:CDS | 30.0% | |
| ! | TCCAGAATTGAAGTTTTTGA+TGG | + | chr3_2:68703873-68703892 | Msa0420250:CDS | 30.0% |
| !! | ACAACATGAAAGTTTGTTGT+TGG | + | chr3_2:68704033-68704052 | Msa0420250:intron | 30.0% |
| AATTATTGCTTGTATGAGTC+AGG | - | chr3_2:68704197-68704216 | None:intergenic | 30.0% | |
| AATAAAACTGATCATACCCT+CGG | + | chr3_2:68704467-68704486 | Msa0420250:intron | 30.0% | |
| !!! | AAATTTGATTTTGGCTTAGG+AGG | - | chr3_2:68704588-68704607 | None:intergenic | 30.0% |
| !!! | GTCAAATTTGATTTTGGCTT+AGG | - | chr3_2:68704591-68704610 | None:intergenic | 30.0% |
| !! | ACCTGAGTCAAATTTGATTT+TGG | - | chr3_2:68704597-68704616 | None:intergenic | 30.0% |
| TATCCACTATAGTATACAGT+TGG | + | chr3_2:68705553-68705572 | Msa0420250:intron | 30.0% | |
| AACTTCTAACCAACACTATA+AGG | + | chr3_2:68705580-68705599 | Msa0420250:intron | 30.0% | |
| TCACTTCTATAAATAGAGGA+AGG | - | chr3_2:68705922-68705941 | None:intergenic | 30.0% | |
| CATCTCACTTCTATAAATAG+AGG | - | chr3_2:68705926-68705945 | None:intergenic | 30.0% | |
| !! | ACAGCTATTTTATCAAGTGT+GGG | - | chr3_2:68705956-68705975 | None:intergenic | 30.0% |
| AAGGGATTTGAATTAAAGCA+AGG | - | chr3_2:68705979-68705998 | None:intergenic | 30.0% | |
| TTTCCATTGAGCAAAAAGTT+TGG | - | chr3_2:68706009-68706028 | None:intergenic | 30.0% | |
| ! | AAACTTTTTGCTCAATGGAA+AGG | + | chr3_2:68706008-68706027 | Msa0420250:intron | 30.0% |
| !! | TTATGGGTCATTTTCCTTAA+TGG | + | chr3_2:68706218-68706237 | Msa0420250:intron | 30.0% |
| ! | TATTTTGTCTCACCAAGTTA+AGG | - | chr3_2:68706305-68706324 | None:intergenic | 30.0% |
| ! | AAAGCAAGCTTTATGAGTAA+TGG | - | chr3_2:68706365-68706384 | None:intergenic | 30.0% |
| TTGTTGGAAACTATCTGTAA+TGG | - | chr3_2:68706638-68706657 | None:intergenic | 30.0% | |
| TGATGTTTATTGTTCCTACA+AGG | - | chr3_2:68706730-68706749 | None:intergenic | 30.0% | |
| AAAATGGACAAATGCTAACA+AGG | - | chr3_2:68706796-68706815 | None:intergenic | 30.0% | |
| ! | AATTTGTTTGGGATCTGATT+TGG | + | chr3_2:68706818-68706837 | Msa0420250:intron | 30.0% |
| TCCATCAAAAACTTCAATTC+TGG | + | chr3_2:68706932-68706951 | Msa0420250:intron | 30.0% | |
| ! | TCCAGAATTGAAGTTTTTGA+TGG | - | chr3_2:68703873-68703892 | None:intergenic | 30.0% |
| !! | TTGTTTTGCAAGATTCTCTA+TGG | + | chr3_2:68707251-68707270 | Msa0420250:intron | 30.0% |
| ! | TGTATTTTCCTGCACAAAAA+GGG | - | chr3_2:68707330-68707349 | None:intergenic | 30.0% |
| ! | TTGTATTTTCCTGCACAAAA+AGG | - | chr3_2:68707331-68707350 | None:intergenic | 30.0% |
| AGCCATAATTCCTTAGATTG+TGG | - | chr3_2:68703742-68703761 | None:intergenic | 35.0% | |
| ACAATCTAAGGAATTATGGC+TGG | + | chr3_2:68703741-68703760 | Msa0420250:exon | 35.0% | |
| GCCATCAAAAACTTCAATTC+TGG | - | chr3_2:68703877-68703896 | None:intergenic | 35.0% | |
| AATTTCTTTGGCAACCTTGT+AGG | - | chr3_2:68706713-68706732 | None:intergenic | 35.0% | |
| ACAAGGTTGCCAAAGAAATT+TGG | + | chr3_2:68704009-68704028 | Msa0420250:intron | 35.0% | |
| CAAGGTTGCCAAAGAAATTT+GGG | + | chr3_2:68704010-68704029 | Msa0420250:intron | 35.0% | |
| CATGTTGTCCCAAATTTCTT+TGG | - | chr3_2:68706701-68706720 | None:intergenic | 35.0% | |
| TCTGTGATGACAAATGAAAG+AGG | + | chr3_2:68704062-68704081 | Msa0420250:intron | 35.0% | |
| TCAATTCTTAAAGGAGTTGG+TGG | - | chr3_2:68704115-68704134 | None:intergenic | 35.0% | |
| CCTTCAATTCTTAAAGGAGT+TGG | - | chr3_2:68704118-68704137 | None:intergenic | 35.0% | |
| ! | CCAACTCCTTTAAGAATTGA+AGG | + | chr3_2:68704115-68704134 | Msa0420250:intron | 35.0% |
| ! | ACTCCTTTAAGAATTGAAGG+CGG | + | chr3_2:68704118-68704137 | Msa0420250:intron | 35.0% |
| TGTCTCTTAATGATCTCATC+AGG | + | chr3_2:68704237-68704256 | Msa0420250:intron | 35.0% | |
| ! | GTTGTTTGCGTGTATTGTTT+TGG | - | chr3_2:68704759-68704778 | None:intergenic | 35.0% |
| GTTGTTGTGTGTGTAAAGAA+AGG | + | chr3_2:68704523-68704542 | Msa0420250:intron | 35.0% | |
| TGCAGATATCGAAAAGTGAA+TGG | + | chr3_2:68704562-68704581 | Msa0420250:intron | 35.0% | |
| GCCAAAATCAAATTTGACTC+AGG | + | chr3_2:68704593-68704612 | Msa0420250:intron | 35.0% | |
| AAGCATATCACTGCAGATAT+TGG | - | chr3_2:68704640-68704659 | None:intergenic | 35.0% | |
| ! | CTAGGTTCGATTTAGAATTG+AGG | + | chr3_2:68704693-68704712 | Msa0420250:intron | 35.0% |
| ! | GTTGTTTGCGTGTATTGTTT+TGG | + | chr3_2:68704759-68704778 | Msa0420250:intron | 35.0% |
| CTTGTAATCATTCCATGAGT+CGG | + | chr3_2:68704913-68704932 | Msa0420250:intron | 35.0% | |
| TTGTAATCATTCCATGAGTC+GGG | + | chr3_2:68704914-68704933 | Msa0420250:intron | 35.0% | |
| TTCAAGAACATCATACTTCC+AGG | - | chr3_2:68704974-68704993 | None:intergenic | 35.0% | |
| AGCAATAAACGTCACAAGAA+AGG | + | chr3_2:68704996-68705015 | Msa0420250:intron | 35.0% | |
| GCAATAAACGTCACAAGAAA+GGG | + | chr3_2:68704997-68705016 | Msa0420250:intron | 35.0% | |
| CAATAAACGTCACAAGAAAG+GGG | + | chr3_2:68704998-68705017 | Msa0420250:intron | 35.0% | |
| AATAAACGTCACAAGAAAGG+GGG | + | chr3_2:68704999-68705018 | Msa0420250:intron | 35.0% | |
| TATCATTCTCCAGAACAATC+TGG | - | chr3_2:68705223-68705242 | None:intergenic | 35.0% | |
| CATATTAATCCAGAGTTCTC+TGG | - | chr3_2:68705360-68705379 | None:intergenic | 35.0% | |
| TAATTAGGACCAGAATGTTC+TGG | + | chr3_2:68705388-68705407 | Msa0420250:intron | 35.0% | |
| TAACTATCTCCAGAACATTC+TGG | - | chr3_2:68705400-68705419 | None:intergenic | 35.0% | |
| AGAGAGTAGAAGAATAACAC+AGG | + | chr3_2:68705470-68705489 | Msa0420250:intron | 35.0% | |
| CTACCAACTGTATACTATAG+TGG | - | chr3_2:68705559-68705578 | None:intergenic | 35.0% | |
| TGATCAAGACCTTATAGTGT+TGG | - | chr3_2:68705592-68705611 | None:intergenic | 35.0% | |
| ! | ATAGTTTGAGATAGGTGTTC+TGG | - | chr3_2:68705627-68705646 | None:intergenic | 35.0% |
| ! | TGGGCTTAATAGTTTGAGAT+AGG | - | chr3_2:68705635-68705654 | None:intergenic | 35.0% |
| ACTCTCAGTCTTAAACATCA+AGG | + | chr3_2:68705896-68705915 | Msa0420250:intron | 35.0% | |
| !! | GACAGCTATTTTATCAAGTG+TGG | - | chr3_2:68705957-68705976 | None:intergenic | 35.0% |
| ! | AAAAAGTTTGGAGCGCAAAA+GGG | - | chr3_2:68705997-68706016 | None:intergenic | 35.0% |
| TCTGTAATGGCAAATGAAAG+AGG | - | chr3_2:68706625-68706644 | None:intergenic | 35.0% | |
| TCCAACAACAAACTTCTGTT+TGG | + | chr3_2:68706650-68706669 | Msa0420250:intron | 35.0% | |
| !! | ACCAAACAGAAGTTTGTTGT+TGG | - | chr3_2:68706654-68706673 | None:intergenic | 35.0% |
| CATGTTGTCCCAAATTTCTT+TGG | + | chr3_2:68706701-68706720 | Msa0420250:intron | 35.0% | |
| CAAGGTTGCCAAAGAAATTT+GGG | - | chr3_2:68704010-68704029 | None:intergenic | 35.0% | |
| ACAAGGTTGCCAAAGAAATT+TGG | - | chr3_2:68704009-68704028 | None:intergenic | 35.0% | |
| AATTTCTTTGGCAACCTTGT+AGG | + | chr3_2:68706713-68706732 | Msa0420250:intron | 35.0% | |
| AGGATCAATAGCAACAACAA+GGG | + | chr3_2:68706998-68707017 | Msa0420250:intron | 35.0% | |
| TACTTAGTTGAGAGATTCTC+AGG | - | chr3_2:68707075-68707094 | None:intergenic | 35.0% | |
| AGGATCAGTAGCAACAACAA+GGG | - | chr3_2:68703811-68703830 | None:intergenic | 40.0% | |
| ! | CTTCAATTCTGGAAACGTCT+GGG | - | chr3_2:68706943-68706962 | None:intergenic | 40.0% |
| ! | ACTTCAATTCTGGAAACGTC+TGG | - | chr3_2:68706942-68706961 | None:intergenic | 40.0% |
| GGATCTTTACTGTTCCTACA+AGG | + | chr3_2:68703992-68704011 | Msa0420250:intron | 40.0% | |
| TCTCCGCCTTCAATTCTTAA+AGG | - | chr3_2:68704124-68704143 | None:intergenic | 40.0% | |
| CATTGAAGACACCAGCAAAA+TGG | + | chr3_2:68704361-68704380 | Msa0420250:intron | 40.0% | |
| ACAATACACGCAAACAACAG+AGG | + | chr3_2:68704438-68704457 | Msa0420250:intron | 40.0% | |
| TGCTATGTGTGTGGAAAGAA+AGG | - | chr3_2:68704668-68704687 | None:intergenic | 40.0% | |
| CTAGATTGTTGCTATGTGTG+TGG | - | chr3_2:68704677-68704696 | None:intergenic | 40.0% | |
| CACACACATAGCAACAATCT+AGG | + | chr3_2:68704675-68704694 | Msa0420250:intron | 40.0% | |
| ! | AATTGAGGCTAGTTACTCTG+AGG | + | chr3_2:68704708-68704727 | Msa0420250:intron | 40.0% |
| ! | ATTGAGGCTAGTTACTCTGA+GGG | + | chr3_2:68704709-68704728 | Msa0420250:intron | 40.0% |
| ACAATACACGCAAACAACAG+AGG | - | chr3_2:68704438-68704457 | None:intergenic | 40.0% | |
| GACACCAGTAGAAAAGAATG+CGG | - | chr3_2:68704827-68704846 | None:intergenic | 40.0% | |
| ATAAACGTCACAAGAAAGGG+GGG | + | chr3_2:68705000-68705019 | Msa0420250:intron | 40.0% | |
| TATAAGGGACCAGAATGTTC+TGG | + | chr3_2:68705129-68705148 | Msa0420250:intron | 40.0% | |
| TATCACTCTCCAGAACATTC+TGG | - | chr3_2:68705141-68705160 | None:intergenic | 40.0% | |
| TAGTTAGGACCAGATTGTTC+TGG | + | chr3_2:68705211-68705230 | Msa0420250:intron | 40.0% | |
| TATCTTGGACCAGAATGTTC+TGG | + | chr3_2:68705297-68705316 | Msa0420250:intron | 40.0% | |
| ATAACACAGGAGAGTTATCC+TGG | + | chr3_2:68705483-68705502 | Msa0420250:intron | 40.0% | |
| !! | ATAGTGGATAATCTCACACG+AGG | - | chr3_2:68705543-68705562 | None:intergenic | 40.0% |
| ! | CAAAAAGTTTGGAGCGCAAA+AGG | - | chr3_2:68705998-68706017 | None:intergenic | 40.0% |
| ! | GCTCCAAACTTTTTGCTCAA+TGG | + | chr3_2:68706003-68706022 | Msa0420250:intron | 40.0% |
| !! | TTTTCAAGAACGTTCTGGAC+AGG | - | chr3_2:68706067-68706086 | None:intergenic | 40.0% |
| !! | CTGGATTTTCAAGAACGTTC+TGG | - | chr3_2:68706072-68706091 | None:intergenic | 40.0% |
| CTTGAAAATCCAGCAAGCTT+TGG | + | chr3_2:68706079-68706098 | Msa0420250:intron | 40.0% | |
| AACATGAAAACTCACGCTAC+TGG | - | chr3_2:68706391-68706410 | None:intergenic | 40.0% | |
| ! | AGTAGCGTGAGTTTTCATGT+TGG | + | chr3_2:68706390-68706409 | Msa0420250:intron | 40.0% |
| ACTCCTTGAAGAATTGAAGG+CGG | - | chr3_2:68706565-68706584 | None:intergenic | 40.0% | |
| CCAACTCCTTGAAGAATTGA+AGG | - | chr3_2:68706568-68706587 | None:intergenic | 40.0% | |
| CCTTCAATTCTTCAAGGAGT+TGG | + | chr3_2:68706565-68706584 | Msa0420250:intron | 40.0% | |
| AGGACAAGGAAATCAAAGTG+CGG | - | chr3_2:68706605-68706624 | None:intergenic | 40.0% | |
| ATGGCAAATGAAAGAGGACA+AGG | - | chr3_2:68706619-68706638 | None:intergenic | 40.0% | |
| TGGTTTGACATCAGTAAGAG+CGG | + | chr3_2:68706848-68706867 | Msa0420250:intron | 40.0% | |
| ! | ACTTCAATTCTGGAAACGTC+TGG | + | chr3_2:68706942-68706961 | Msa0420250:intron | 40.0% |
| ! | CTTCAATTCTGGAAACGTCT+GGG | + | chr3_2:68706943-68706962 | Msa0420250:intron | 40.0% |
| ! | TGTTGCTATTGATCCTCATC+CGG | - | chr3_2:68706994-68707013 | None:intergenic | 40.0% |
| GAGGATCAATAGCAACAACA+AGG | + | chr3_2:68706997-68707016 | Msa0420250:intron | 40.0% | |
| TGCACAAAAAGGGTAGACTA+AGG | - | chr3_2:68707320-68707339 | None:intergenic | 40.0% | |
| ! | TTAGTCTACCCTTTTTGTGC+AGG | + | chr3_2:68707319-68707338 | Msa0420250:intron | 40.0% |
| TGTGCAGGAAAATACAAGCA+AGG | + | chr3_2:68707334-68707353 | Msa0420250:intron | 40.0% | |
| TTCCTTAGATTGTGGAAGGC+AGG | - | chr3_2:68703734-68703753 | None:intergenic | 45.0% | |
| GAGGATCAGTAGCAACAACA+AGG | - | chr3_2:68703812-68703831 | None:intergenic | 45.0% | |
| TTTGCATAGGTGACCACTGT+CGG | - | chr3_2:68703837-68703856 | None:intergenic | 45.0% | |
| ! | GTCTGGGAACTGTTTTGCAT+AGG | - | chr3_2:68703850-68703869 | None:intergenic | 45.0% |
| ATGGCCATAATTTCCGTCGT+TGG | + | chr3_2:68703892-68703911 | Msa0420250:CDS | 45.0% | |
| CATGCCAACGACGGAAATTA+TGG | - | chr3_2:68703899-68703918 | None:intergenic | 45.0% | |
| CTTCACACTGCTAGACATCT+AGG | + | chr3_2:68703926-68703945 | Msa0420250:CDS | 45.0% | |
| ! | GTCAGGCAACTTTTCAACCA+AGG | - | chr3_2:68704180-68704199 | None:intergenic | 45.0% |
| CATTGAAGACACCAGCAGAA+TGG | + | chr3_2:68704268-68704287 | Msa0420250:intron | 45.0% | |
| ! | TTGCTCTGAGTGCAAAGCTT+TGG | - | chr3_2:68704312-68704331 | None:intergenic | 45.0% |
| ! | AGCTCTGCATTCCATTTTGC+TGG | - | chr3_2:68704375-68704394 | None:intergenic | 45.0% |
| !! | ATTGGGGTTAGTTACTCCGA+GGG | - | chr3_2:68704486-68704505 | None:intergenic | 45.0% |
| !! | AATTGGGGTTAGTTACTCCG+AGG | - | chr3_2:68704487-68704506 | None:intergenic | 45.0% |
| TTCTCTCGACTCCAAAGCTT+TGG | + | chr3_2:68704790-68704809 | Msa0420250:intron | 45.0% | |
| ! | AGCTCCGCATTCTTTTCTAC+TGG | + | chr3_2:68704820-68704839 | Msa0420250:intron | 45.0% |
| TTGAAAAGTTGCCCGACTCA+TGG | - | chr3_2:68704928-68704947 | None:intergenic | 45.0% | |
| TAAACGTCACAAGAAAGGGG+GGG | + | chr3_2:68705001-68705020 | Msa0420250:intron | 45.0% | |
| AAACTGCCTCCAGAACATTC+TGG | - | chr3_2:68705309-68705328 | None:intergenic | 45.0% | |
| AAGTTAGGACCAGAGAACTC+TGG | + | chr3_2:68705348-68705367 | Msa0420250:intron | 45.0% | |
| TTATCCTGGTTCACCAAACC+CGG | + | chr3_2:68705497-68705516 | Msa0420250:intron | 45.0% | |
| TAATCTCACACGAGGTGTGT+GGG | - | chr3_2:68705535-68705554 | None:intergenic | 45.0% | |
| ATAATCTCACACGAGGTGTG+TGG | - | chr3_2:68705536-68705555 | None:intergenic | 45.0% | |
| ! | ATAGGTGTTCTGGACTGATC+TGG | - | chr3_2:68705617-68705636 | None:intergenic | 45.0% |
| GTTGCAAACTCACAAGTTGC+TGG | - | chr3_2:68706124-68706143 | None:intergenic | 45.0% | |
| GTGAGTTTGCAACAGCTACT+TGG | + | chr3_2:68706131-68706150 | Msa0420250:intron | 45.0% | |
| ! | AGCGTGAGTTTTCATGTTGG+TGG | + | chr3_2:68706393-68706412 | Msa0420250:intron | 45.0% |
| TCTCCGCCTTCAATTCTTCA+AGG | + | chr3_2:68706559-68706578 | Msa0420250:intron | 45.0% | |
| GAATGTCAAGTACACTGCTG+AGG | - | chr3_2:68706682-68706701 | None:intergenic | 45.0% | |
| !! | GGATCTGATTTGGCTTCATC+TGG | + | chr3_2:68706828-68706847 | Msa0420250:intron | 45.0% |
| ATGGACAGAATTCCTGTCGT+TGG | - | chr3_2:68706917-68706936 | None:intergenic | 45.0% | |
| GTCTGGGAACTGTATTGCTT+AGG | + | chr3_2:68706959-68706978 | Msa0420250:intron | 45.0% | |
| !!! | TAATTAATTGATTTTATATA+AGG | + | chr3_2:68705113-68705132 | Msa0420250:intron | 5.0% |
| !!! | AATTAATTGATTTTATATAA+GGG | + | chr3_2:68705114-68705133 | Msa0420250:intron | 5.0% |
| CACCTGCCTTCCACAATCTA+AGG | + | chr3_2:68703729-68703748 | Msa0420250:five_prime_UTR | 50.0% | |
| AGATGCGTTCATGCCAACGA+CGG | - | chr3_2:68706901-68706920 | None:intergenic | 50.0% | |
| CTTTCACACGTGTTTGTCGC+TGG | + | chr3_2:68704152-68704171 | Msa0420250:intron | 50.0% | |
| AGCTCTGCATTCCATTCTGC+TGG | - | chr3_2:68704282-68704301 | None:intergenic | 50.0% | |
| TGCTCTCGAGTGCAAAGCTT+TGG | - | chr3_2:68704405-68704424 | None:intergenic | 50.0% | |
| ! | GTCGGGCAACTTTTCAACCA+AGG | + | chr3_2:68704931-68704950 | Msa0420250:intron | 50.0% |
| CTTGGACCAGAATGTTCTGG+AGG | + | chr3_2:68705300-68705319 | Msa0420250:intron | 50.0% | |
| AATCTCACACGAGGTGTGTG+GGG | - | chr3_2:68705534-68705553 | None:intergenic | 50.0% | |
| GACTCTCTTCCAAAGCTTGC+TGG | - | chr3_2:68706091-68706110 | None:intergenic | 50.0% | |
| TTCACACTGCTAGACGTCCA+CGG | - | chr3_2:68706882-68706901 | None:intergenic | 50.0% | |
| ATTGCTTAGGTGACCACTGC+CGG | + | chr3_2:68706972-68706991 | Msa0420250:intron | 50.0% | |
| TATTGATCCTCATCCGGCAG+TGG | - | chr3_2:68706988-68707007 | None:intergenic | 50.0% | |
| TGTGGAAGGCAGGTGACTGA+AGG | - | chr3_2:68703724-68703743 | None:intergenic | 55.0% | |
| TACTGATCCTCCTCCGACAG+TGG | + | chr3_2:68703821-68703840 | Msa0420250:CDS | 55.0% | |
| AGCTGCACGAGCCAAAGCTT+TGG | - | chr3_2:68704298-68704317 | None:intergenic | 55.0% | |
| CGTGTTTGTCGCTGATGCCT+TGG | - | chr3_2:68704951-68704970 | None:intergenic | 55.0% | |
| GATGCGTTCATGCCAACGAC+AGG | + | chr3_2:68706902-68706921 | Msa0420250:intron | 55.0% | |
| TAGGTGACCACTGTCGGAGG+AGG | - | chr3_2:68703831-68703850 | None:intergenic | 60.0% | |
| GCATAGGTGACCACTGTCGG+AGG | - | chr3_2:68703834-68703853 | None:intergenic | 60.0% | |
| CGTGTTTGTCGCTGGTGCCT+TGG | + | chr3_2:68704160-68704179 | Msa0420250:intron | 60.0% | |
| GCATCAGCGACAAACACGCC+TGG | + | chr3_2:68704953-68704972 | Msa0420250:intron | 60.0% | |
| !! | GTAGCCGGGTTTGGTGAACC+AGG | - | chr3_2:68705504-68705523 | None:intergenic | 60.0% |
| GGACTGGAAGTAGCCGGGTT+TGG | - | chr3_2:68705513-68705532 | None:intergenic | 60.0% | |
| TGTGGGGACTGGAAGTAGCC+GGG | - | chr3_2:68705518-68705537 | None:intergenic | 60.0% | |
| GTGTGGGGACTGGAAGTAGC+CGG | - | chr3_2:68705519-68705538 | None:intergenic | 60.0% | |
| TAAGAGCGGAAGCGACACCG+TGG | + | chr3_2:68706862-68706881 | Msa0420250:intron | 60.0% | |
| TAGGTGACCACTGCCGGATG+AGG | + | chr3_2:68706978-68706997 | Msa0420250:intron | 60.0% | |
| CACACGAGGTGTGTGGGGAC+TGG | - | chr3_2:68705529-68705548 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 68703681 | 68707362 | 68703681 | ID=Msa0420250;Name=Msa0420250 |
| chr3_2 | mRNA | 68703681 | 68707362 | 68703681 | ID=Msa0420250-mRNA-1;Parent=Msa0420250;Name=Msa0420250-mRNA-1;_AED=0.46;_eAED=0.46;_QI=75|1|1|1|0|0.5|2|22|63 |
| chr3_2 | exon | 68703681 | 68703947 | 68703681 | ID=Msa0420250-mRNA-1:exon:16227;Parent=Msa0420250-mRNA-1 |
| chr3_2 | exon | 68707341 | 68707362 | 68707341 | ID=Msa0420250-mRNA-1:exon:16228;Parent=Msa0420250-mRNA-1 |
| chr3_2 | five_prime_UTR | 68703681 | 68703755 | 68703681 | ID=Msa0420250-mRNA-1:five_prime_utr;Parent=Msa0420250-mRNA-1 |
| chr3_2 | CDS | 68703756 | 68703947 | 68703756 | ID=Msa0420250-mRNA-1:cds;Parent=Msa0420250-mRNA-1 |
| chr3_2 | three_prime_UTR | 68707341 | 68707362 | 68707341 | ID=Msa0420250-mRNA-1:three_prime_utr;Parent=Msa0420250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
